Multiple sequence alignment - TraesCS6D01G356300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G356300 chr6D 100.000 2275 0 0 1 2275 450642532 450640258 0.000000e+00 4202
1 TraesCS6D01G356300 chr6D 94.715 246 11 2 365 609 76080202 76080446 4.590000e-102 381
2 TraesCS6D01G356300 chr6D 89.434 265 27 1 22 285 76079826 76080090 1.300000e-87 333
3 TraesCS6D01G356300 chr6A 86.385 1895 149 60 368 2225 596163479 596161657 0.000000e+00 1969
4 TraesCS6D01G356300 chr6A 94.118 102 4 2 1924 2025 81256978 81256879 1.090000e-33 154
5 TraesCS6D01G356300 chr6B 86.076 1343 107 39 937 2232 684385650 684384341 0.000000e+00 1371
6 TraesCS6D01G356300 chr6B 83.599 439 38 20 565 982 684386072 684385647 4.590000e-102 381
7 TraesCS6D01G356300 chr6B 87.671 292 31 3 1 287 684386948 684386657 3.620000e-88 335
8 TraesCS6D01G356300 chr6B 96.226 106 4 0 365 470 684386543 684386438 8.350000e-40 174
9 TraesCS6D01G356300 chr6B 85.906 149 14 7 1901 2044 713310390 713310536 3.910000e-33 152
10 TraesCS6D01G356300 chr6B 85.235 149 15 7 1901 2044 713517671 713517817 1.820000e-31 147
11 TraesCS6D01G356300 chr6B 87.023 131 14 3 1915 2044 713863969 713864097 6.550000e-31 145
12 TraesCS6D01G356300 chr3D 93.208 265 14 4 368 630 382820249 382819987 9.860000e-104 387
13 TraesCS6D01G356300 chr3D 93.208 265 14 4 368 630 554658934 554658672 9.860000e-104 387
14 TraesCS6D01G356300 chr3D 89.434 265 27 1 22 285 382820628 382820364 1.300000e-87 333
15 TraesCS6D01G356300 chr3D 89.434 265 27 1 22 285 554659313 554659049 1.300000e-87 333
16 TraesCS6D01G356300 chr1D 95.122 246 10 2 365 609 207148502 207148746 9.860000e-104 387
17 TraesCS6D01G356300 chr1D 89.057 265 28 1 22 285 207148126 207148390 6.060000e-86 327
18 TraesCS6D01G356300 chr1D 94.231 104 5 1 1682 1785 436972422 436972320 8.410000e-35 158
19 TraesCS6D01G356300 chr7D 95.213 188 9 0 1088 1275 84178254 84178441 4.750000e-77 298
20 TraesCS6D01G356300 chr7D 89.831 118 9 3 1902 2018 549548383 549548498 5.060000e-32 148
21 TraesCS6D01G356300 chr7B 94.681 188 10 0 1088 1275 33805426 33805613 2.210000e-75 292
22 TraesCS6D01G356300 chr7B 92.537 134 10 0 1 134 745862992 745863125 2.310000e-45 193
23 TraesCS6D01G356300 chr7B 92.537 134 10 0 1 134 745888897 745889030 2.310000e-45 193
24 TraesCS6D01G356300 chr7B 91.791 134 11 0 1 134 745923801 745923934 1.070000e-43 187
25 TraesCS6D01G356300 chr7B 91.791 134 10 1 1 133 745806991 745807124 3.860000e-43 185
26 TraesCS6D01G356300 chr7B 88.034 117 10 4 1903 2018 593924949 593925062 3.940000e-28 135
27 TraesCS6D01G356300 chr7A 93.085 188 13 0 1088 1275 85588719 85588906 2.230000e-70 276
28 TraesCS6D01G356300 chr7A 87.179 117 11 4 1903 2018 635035374 635035487 1.830000e-26 130
29 TraesCS6D01G356300 chr5D 94.231 104 5 1 1682 1785 17506919 17506817 8.410000e-35 158
30 TraesCS6D01G356300 chr5D 91.429 105 6 3 1682 1785 17855160 17855058 8.470000e-30 141
31 TraesCS6D01G356300 chr5B 94.231 104 5 1 1682 1785 13842036 13842138 8.410000e-35 158
32 TraesCS6D01G356300 chr5A 94.231 104 5 1 1682 1785 12541436 12541538 8.410000e-35 158
33 TraesCS6D01G356300 chr1B 94.231 104 5 1 1682 1785 503627533 503627635 8.410000e-35 158
34 TraesCS6D01G356300 chr1B 94.231 104 5 1 1682 1785 592029863 592029761 8.410000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G356300 chr6D 450640258 450642532 2274 True 4202.00 4202 100.0000 1 2275 1 chr6D.!!$R1 2274
1 TraesCS6D01G356300 chr6D 76079826 76080446 620 False 357.00 381 92.0745 22 609 2 chr6D.!!$F1 587
2 TraesCS6D01G356300 chr6A 596161657 596163479 1822 True 1969.00 1969 86.3850 368 2225 1 chr6A.!!$R2 1857
3 TraesCS6D01G356300 chr6B 684384341 684386948 2607 True 565.25 1371 88.3930 1 2232 4 chr6B.!!$R1 2231
4 TraesCS6D01G356300 chr3D 382819987 382820628 641 True 360.00 387 91.3210 22 630 2 chr3D.!!$R1 608
5 TraesCS6D01G356300 chr3D 554658672 554659313 641 True 360.00 387 91.3210 22 630 2 chr3D.!!$R2 608
6 TraesCS6D01G356300 chr1D 207148126 207148746 620 False 357.00 387 92.0895 22 609 2 chr1D.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 546 0.247736 GCCTGCGAAGAGGAAGAAGA 59.752 55.0 0.0 0.0 34.69 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 2015 0.534877 AACTGGCAGTCACGCATTGA 60.535 50.0 22.31 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.514553 CATGTCTGCGAGCAGGAGA 59.485 57.895 22.93 10.21 45.39 3.71
119 121 3.429684 GCGAGGGGAAAACAAAACTGAAA 60.430 43.478 0.00 0.00 0.00 2.69
130 132 7.637709 AAACAAAACTGAAACTCTCAAACAC 57.362 32.000 0.00 0.00 32.17 3.32
134 136 7.382218 ACAAAACTGAAACTCTCAAACACAAAG 59.618 33.333 0.00 0.00 32.17 2.77
137 139 5.183904 ACTGAAACTCTCAAACACAAAGCTT 59.816 36.000 0.00 0.00 32.17 3.74
138 140 5.640732 TGAAACTCTCAAACACAAAGCTTC 58.359 37.500 0.00 0.00 0.00 3.86
153 155 0.944386 GCTTCGTGACACACCAACAT 59.056 50.000 6.37 0.00 0.00 2.71
229 235 2.124983 CAGCCGATCCAGTGGTGG 60.125 66.667 9.54 10.97 46.63 4.61
287 316 1.514678 GCACCCTGCGATTCACACAA 61.515 55.000 0.00 0.00 31.71 3.33
289 318 0.889186 ACCCTGCGATTCACACAACC 60.889 55.000 0.00 0.00 0.00 3.77
290 319 0.888736 CCCTGCGATTCACACAACCA 60.889 55.000 0.00 0.00 0.00 3.67
298 327 4.605968 CGATTCACACAACCACAATTCAA 58.394 39.130 0.00 0.00 0.00 2.69
301 330 4.103365 TCACACAACCACAATTCAACAC 57.897 40.909 0.00 0.00 0.00 3.32
302 331 3.507622 TCACACAACCACAATTCAACACA 59.492 39.130 0.00 0.00 0.00 3.72
303 332 3.858812 CACACAACCACAATTCAACACAG 59.141 43.478 0.00 0.00 0.00 3.66
305 334 2.495270 ACAACCACAATTCAACACAGCA 59.505 40.909 0.00 0.00 0.00 4.41
308 343 2.495270 ACCACAATTCAACACAGCACAA 59.505 40.909 0.00 0.00 0.00 3.33
311 346 3.023119 ACAATTCAACACAGCACAAGGA 58.977 40.909 0.00 0.00 0.00 3.36
317 352 2.191128 ACACAGCACAAGGATTCTCC 57.809 50.000 0.00 0.00 36.58 3.71
318 353 1.421268 ACACAGCACAAGGATTCTCCA 59.579 47.619 0.00 0.00 39.61 3.86
319 354 2.158623 ACACAGCACAAGGATTCTCCAA 60.159 45.455 0.00 0.00 39.61 3.53
320 355 2.886523 CACAGCACAAGGATTCTCCAAA 59.113 45.455 0.00 0.00 39.61 3.28
321 356 3.057736 CACAGCACAAGGATTCTCCAAAG 60.058 47.826 0.00 0.00 39.61 2.77
322 357 2.490903 CAGCACAAGGATTCTCCAAAGG 59.509 50.000 0.00 0.00 39.61 3.11
323 358 1.821136 GCACAAGGATTCTCCAAAGGG 59.179 52.381 0.00 0.00 39.61 3.95
324 359 2.450476 CACAAGGATTCTCCAAAGGGG 58.550 52.381 0.00 0.00 39.61 4.79
325 360 1.359130 ACAAGGATTCTCCAAAGGGGG 59.641 52.381 0.00 0.00 39.61 5.40
326 361 0.336392 AAGGATTCTCCAAAGGGGGC 59.664 55.000 0.00 0.00 39.61 5.80
327 362 0.850883 AGGATTCTCCAAAGGGGGCA 60.851 55.000 0.00 0.00 39.61 5.36
328 363 0.262876 GGATTCTCCAAAGGGGGCAT 59.737 55.000 0.00 0.00 36.28 4.40
329 364 1.499007 GGATTCTCCAAAGGGGGCATA 59.501 52.381 0.00 0.00 36.28 3.14
330 365 2.091333 GGATTCTCCAAAGGGGGCATAA 60.091 50.000 0.00 0.00 36.28 1.90
331 366 3.438520 GGATTCTCCAAAGGGGGCATAAT 60.439 47.826 0.00 0.00 36.28 1.28
332 367 4.202673 GGATTCTCCAAAGGGGGCATAATA 60.203 45.833 0.00 0.00 36.28 0.98
333 368 4.890499 TTCTCCAAAGGGGGCATAATAA 57.110 40.909 0.00 0.00 33.18 1.40
334 369 5.417170 TTCTCCAAAGGGGGCATAATAAT 57.583 39.130 0.00 0.00 33.18 1.28
335 370 5.417170 TCTCCAAAGGGGGCATAATAATT 57.583 39.130 0.00 0.00 33.18 1.40
336 371 5.393866 TCTCCAAAGGGGGCATAATAATTC 58.606 41.667 0.00 0.00 33.18 2.17
337 372 5.136048 TCTCCAAAGGGGGCATAATAATTCT 59.864 40.000 0.00 0.00 33.18 2.40
338 373 5.147032 TCCAAAGGGGGCATAATAATTCTG 58.853 41.667 0.00 0.00 37.22 3.02
339 374 5.103301 TCCAAAGGGGGCATAATAATTCTGA 60.103 40.000 0.00 0.00 37.22 3.27
340 375 5.602145 CCAAAGGGGGCATAATAATTCTGAA 59.398 40.000 0.00 0.00 0.00 3.02
351 386 8.375465 GCATAATAATTCTGAACAAAGCAACAC 58.625 33.333 0.00 0.00 0.00 3.32
354 389 3.781079 TTCTGAACAAAGCAACACAGG 57.219 42.857 0.00 0.00 0.00 4.00
357 392 3.953612 TCTGAACAAAGCAACACAGGATT 59.046 39.130 0.00 0.00 0.00 3.01
361 396 2.624838 ACAAAGCAACACAGGATTGAGG 59.375 45.455 0.00 0.00 0.00 3.86
362 397 1.915141 AAGCAACACAGGATTGAGGG 58.085 50.000 0.00 0.00 0.00 4.30
466 546 0.247736 GCCTGCGAAGAGGAAGAAGA 59.752 55.000 0.00 0.00 34.69 2.87
519 599 1.148273 GAGCTCCCCACACAACACA 59.852 57.895 0.87 0.00 0.00 3.72
658 1000 1.531840 GCATCTCGCCCCCTCTCTA 60.532 63.158 0.00 0.00 32.94 2.43
734 1078 0.882474 CGAGGGTTCTGTTCTCTCGT 59.118 55.000 12.90 0.00 41.37 4.18
738 1089 0.680061 GGTTCTGTTCTCTCGTGGGT 59.320 55.000 0.00 0.00 0.00 4.51
757 1108 2.612251 GAGGAGGAGGAGGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
762 1113 2.367107 GGAGGAGGGAGGGGGTTC 60.367 72.222 0.00 0.00 0.00 3.62
804 1157 3.320359 CCCTAACGGGCCACATCT 58.680 61.111 4.39 0.00 45.33 2.90
805 1158 1.146263 CCCTAACGGGCCACATCTC 59.854 63.158 4.39 0.00 45.33 2.75
807 1160 1.622607 CCTAACGGGCCACATCTCCA 61.623 60.000 4.39 0.00 0.00 3.86
808 1161 0.251916 CTAACGGGCCACATCTCCAA 59.748 55.000 4.39 0.00 0.00 3.53
809 1162 0.251916 TAACGGGCCACATCTCCAAG 59.748 55.000 4.39 0.00 0.00 3.61
813 1166 2.356278 GCCACATCTCCAAGCCCA 59.644 61.111 0.00 0.00 0.00 5.36
814 1167 1.304381 GCCACATCTCCAAGCCCAA 60.304 57.895 0.00 0.00 0.00 4.12
816 1169 0.251297 CCACATCTCCAAGCCCAACA 60.251 55.000 0.00 0.00 0.00 3.33
817 1170 0.883833 CACATCTCCAAGCCCAACAC 59.116 55.000 0.00 0.00 0.00 3.32
821 1174 3.172106 TCCAAGCCCAACACCGGA 61.172 61.111 9.46 0.00 0.00 5.14
826 1179 2.282887 GCCCAACACCGGACCATT 60.283 61.111 9.46 0.00 0.00 3.16
838 1191 3.264845 ACCATTTCCCACGGGCCT 61.265 61.111 0.84 0.00 34.68 5.19
839 1192 2.755469 CCATTTCCCACGGGCCTG 60.755 66.667 11.02 11.02 34.68 4.85
840 1193 3.451894 CATTTCCCACGGGCCTGC 61.452 66.667 12.89 0.00 34.68 4.85
887 1244 2.303311 AGCCCTCGCCTCTATAAAATCC 59.697 50.000 0.00 0.00 34.57 3.01
895 1252 3.060611 CCTCTATAAAATCCCCCACCCA 58.939 50.000 0.00 0.00 0.00 4.51
930 1288 3.774528 ATCAGCAGAAGCCGCCGA 61.775 61.111 0.00 0.00 43.56 5.54
1035 1453 1.534235 CCCCCTCGACCCCTATCTG 60.534 68.421 0.00 0.00 0.00 2.90
1037 1463 1.152440 CCCTCGACCCCTATCTGCT 60.152 63.158 0.00 0.00 0.00 4.24
1283 1716 4.040706 TCCTCCGAGAAGTAGATCTAGGTC 59.959 50.000 1.64 3.67 41.45 3.85
1338 1771 1.066143 CCCAGTAGCTGTGATCCGTTT 60.066 52.381 0.00 0.00 0.00 3.60
1339 1772 2.167693 CCCAGTAGCTGTGATCCGTTTA 59.832 50.000 0.00 0.00 0.00 2.01
1340 1773 3.181465 CCCAGTAGCTGTGATCCGTTTAT 60.181 47.826 0.00 0.00 0.00 1.40
1341 1774 4.442706 CCAGTAGCTGTGATCCGTTTATT 58.557 43.478 0.00 0.00 0.00 1.40
1362 1802 8.962884 TTATTCAGTATGCATGCTAAGAAGAA 57.037 30.769 17.42 16.46 34.76 2.52
1363 1803 6.915544 TTCAGTATGCATGCTAAGAAGAAG 57.084 37.500 17.42 2.71 34.76 2.85
1364 1804 6.225981 TCAGTATGCATGCTAAGAAGAAGA 57.774 37.500 17.42 5.12 34.76 2.87
1368 1808 3.603532 TGCATGCTAAGAAGAAGACCTG 58.396 45.455 20.33 0.00 0.00 4.00
1372 1812 5.684552 GCATGCTAAGAAGAAGACCTGATCT 60.685 44.000 11.37 0.00 40.46 2.75
1386 1826 9.906660 GAAGACCTGATCTAGTATCTGTAATTG 57.093 37.037 0.00 0.00 36.27 2.32
1475 1918 5.178061 TCCTATATTATCATGCTTGTGGCG 58.822 41.667 0.00 0.00 45.43 5.69
1476 1919 4.333649 CCTATATTATCATGCTTGTGGCGG 59.666 45.833 0.00 0.00 45.43 6.13
1486 1929 0.037326 CTTGTGGCGGTCTGCTTCTA 60.037 55.000 3.10 0.00 45.43 2.10
1487 1930 0.320421 TTGTGGCGGTCTGCTTCTAC 60.320 55.000 3.10 0.00 45.43 2.59
1493 1936 3.124560 GGCGGTCTGCTTCTACTATTTC 58.875 50.000 3.10 0.00 45.43 2.17
1498 1943 5.505819 CGGTCTGCTTCTACTATTTCATCGA 60.506 44.000 0.00 0.00 0.00 3.59
1501 1946 7.255173 GGTCTGCTTCTACTATTTCATCGACTA 60.255 40.741 0.00 0.00 0.00 2.59
1517 1962 8.173542 TCATCGACTATAAGTTGCAATACCTA 57.826 34.615 0.59 0.00 29.55 3.08
1551 1997 7.096884 ACTACAGTGCTGATTAGAACGAATA 57.903 36.000 6.17 0.00 37.56 1.75
1552 1998 7.197017 ACTACAGTGCTGATTAGAACGAATAG 58.803 38.462 6.17 0.00 37.56 1.73
1563 2009 8.248253 TGATTAGAACGAATAGTTAGCTGAACA 58.752 33.333 0.00 0.00 44.35 3.18
1566 2012 7.295952 AGAACGAATAGTTAGCTGAACAATG 57.704 36.000 0.00 0.00 44.35 2.82
1567 2013 7.097192 AGAACGAATAGTTAGCTGAACAATGA 58.903 34.615 0.00 0.00 44.35 2.57
1569 2015 7.849804 ACGAATAGTTAGCTGAACAATGAAT 57.150 32.000 0.00 0.00 40.86 2.57
1575 2021 6.327934 AGTTAGCTGAACAATGAATCAATGC 58.672 36.000 0.00 0.00 40.86 3.56
1576 2022 3.766151 AGCTGAACAATGAATCAATGCG 58.234 40.909 0.00 0.00 0.00 4.73
1577 2023 3.192001 AGCTGAACAATGAATCAATGCGT 59.808 39.130 0.00 0.00 0.00 5.24
1578 2024 3.302434 GCTGAACAATGAATCAATGCGTG 59.698 43.478 0.00 0.00 0.00 5.34
1581 2027 4.216042 TGAACAATGAATCAATGCGTGACT 59.784 37.500 0.00 0.00 39.72 3.41
1582 2028 4.087510 ACAATGAATCAATGCGTGACTG 57.912 40.909 0.00 0.00 39.72 3.51
1583 2029 2.838386 ATGAATCAATGCGTGACTGC 57.162 45.000 0.00 0.00 39.72 4.40
1585 2031 0.804364 GAATCAATGCGTGACTGCCA 59.196 50.000 0.00 0.00 39.72 4.92
1586 2032 0.806868 AATCAATGCGTGACTGCCAG 59.193 50.000 0.00 0.00 39.72 4.85
1587 2033 0.321919 ATCAATGCGTGACTGCCAGT 60.322 50.000 0.00 0.00 39.72 4.00
1589 2035 0.386352 CAATGCGTGACTGCCAGTTG 60.386 55.000 0.00 0.00 0.00 3.16
1590 2036 2.133742 AATGCGTGACTGCCAGTTGC 62.134 55.000 0.00 4.76 41.77 4.17
1593 2039 1.227999 GCGTGACTGCCAGTTGCTTA 61.228 55.000 0.00 0.00 42.00 3.09
1594 2040 0.792640 CGTGACTGCCAGTTGCTTAG 59.207 55.000 0.00 0.00 42.00 2.18
1595 2041 0.519077 GTGACTGCCAGTTGCTTAGC 59.481 55.000 0.00 0.00 42.00 3.09
1600 2048 2.157738 CTGCCAGTTGCTTAGCTCTTT 58.842 47.619 5.60 0.00 42.00 2.52
1607 2055 3.633986 AGTTGCTTAGCTCTTTTTGCTGT 59.366 39.130 5.60 0.00 41.32 4.40
1626 2074 4.461405 CTGTTGCTTTGTCTCGATTTGAG 58.539 43.478 0.00 0.00 46.72 3.02
1641 2089 7.969387 TCGATTTGAGAACTTTTCAACTTTG 57.031 32.000 0.00 0.00 34.50 2.77
1644 2092 8.647226 CGATTTGAGAACTTTTCAACTTTGTTT 58.353 29.630 0.00 0.00 34.50 2.83
1645 2093 9.958285 GATTTGAGAACTTTTCAACTTTGTTTC 57.042 29.630 0.00 0.00 34.50 2.78
1648 2096 8.742554 TGAGAACTTTTCAACTTTGTTTCTTC 57.257 30.769 0.00 0.00 0.00 2.87
1671 2123 6.590068 TCATTTGGATTTGCTTCTTTTCCAA 58.410 32.000 0.00 0.00 42.98 3.53
1679 2131 4.134379 TGCTTCTTTTCCAATTTGTGCA 57.866 36.364 0.00 0.00 0.00 4.57
1680 2132 4.706035 TGCTTCTTTTCCAATTTGTGCAT 58.294 34.783 0.00 0.00 0.00 3.96
1712 2164 5.801444 TGACGATTTGCAAATATTCAAGCTG 59.199 36.000 24.15 9.10 0.00 4.24
1739 2191 2.028930 ACCAAATCACAGGTCGTCTCTC 60.029 50.000 0.00 0.00 30.79 3.20
1791 2243 1.202758 TGAACCGAGCCATCACTTTGT 60.203 47.619 0.00 0.00 0.00 2.83
1797 2249 3.589988 CGAGCCATCACTTTGTAGTTCT 58.410 45.455 0.00 0.00 30.26 3.01
1798 2250 3.614616 CGAGCCATCACTTTGTAGTTCTC 59.385 47.826 0.00 0.00 30.26 2.87
1842 2294 8.549338 AAACGGTTGGTTTTCTTTTGAATAAA 57.451 26.923 0.00 0.00 46.52 1.40
1843 2295 7.528481 ACGGTTGGTTTTCTTTTGAATAAAC 57.472 32.000 0.00 0.00 38.37 2.01
1846 2304 7.201453 CGGTTGGTTTTCTTTTGAATAAACGTT 60.201 33.333 0.00 0.00 38.37 3.99
1979 2449 2.434336 ACCTTCTGACACAGTGCTGTTA 59.566 45.455 0.00 0.00 42.83 2.41
2033 2503 4.667573 TGATACAAAACTGCCCCACATTA 58.332 39.130 0.00 0.00 0.00 1.90
2089 2559 5.967088 TCTAGTTTTGTGCTATCTCTGGAC 58.033 41.667 0.00 0.00 0.00 4.02
2117 2587 9.423061 ACAGATTTTTAGTTGGCATTTTATGTC 57.577 29.630 0.00 0.00 34.88 3.06
2167 2651 3.354131 TTTTTCCGTTGGCTGCAAC 57.646 47.368 0.50 3.56 0.00 4.17
2168 2652 0.820871 TTTTTCCGTTGGCTGCAACT 59.179 45.000 0.50 0.00 33.21 3.16
2169 2653 1.681538 TTTTCCGTTGGCTGCAACTA 58.318 45.000 0.50 0.00 33.21 2.24
2170 2654 1.681538 TTTCCGTTGGCTGCAACTAA 58.318 45.000 0.50 0.00 33.21 2.24
2171 2655 1.681538 TTCCGTTGGCTGCAACTAAA 58.318 45.000 0.50 0.00 33.21 1.85
2186 2670 7.288317 TGCAACTAAACATTTGACTTTTGTG 57.712 32.000 0.00 0.00 0.00 3.33
2204 2688 0.679505 TGGGTCTGTCTTCGTTGGAG 59.320 55.000 0.00 0.00 0.00 3.86
2232 2716 6.128499 CCCATTTCATTGCTTTATGTTGTGTG 60.128 38.462 0.00 0.00 0.00 3.82
2233 2717 6.645827 CCATTTCATTGCTTTATGTTGTGTGA 59.354 34.615 0.00 0.00 0.00 3.58
2234 2718 7.332430 CCATTTCATTGCTTTATGTTGTGTGAT 59.668 33.333 0.00 0.00 0.00 3.06
2235 2719 8.714179 CATTTCATTGCTTTATGTTGTGTGATT 58.286 29.630 0.00 0.00 0.00 2.57
2236 2720 7.872163 TTCATTGCTTTATGTTGTGTGATTC 57.128 32.000 0.00 0.00 0.00 2.52
2237 2721 7.218228 TCATTGCTTTATGTTGTGTGATTCT 57.782 32.000 0.00 0.00 0.00 2.40
2238 2722 8.334263 TCATTGCTTTATGTTGTGTGATTCTA 57.666 30.769 0.00 0.00 0.00 2.10
2239 2723 8.959548 TCATTGCTTTATGTTGTGTGATTCTAT 58.040 29.630 0.00 0.00 0.00 1.98
2240 2724 9.016623 CATTGCTTTATGTTGTGTGATTCTATG 57.983 33.333 0.00 0.00 0.00 2.23
2241 2725 7.686438 TGCTTTATGTTGTGTGATTCTATGT 57.314 32.000 0.00 0.00 0.00 2.29
2242 2726 8.109705 TGCTTTATGTTGTGTGATTCTATGTT 57.890 30.769 0.00 0.00 0.00 2.71
2243 2727 8.236586 TGCTTTATGTTGTGTGATTCTATGTTC 58.763 33.333 0.00 0.00 0.00 3.18
2244 2728 7.426456 GCTTTATGTTGTGTGATTCTATGTTCG 59.574 37.037 0.00 0.00 0.00 3.95
2245 2729 7.899178 TTATGTTGTGTGATTCTATGTTCGT 57.101 32.000 0.00 0.00 0.00 3.85
2246 2730 5.839262 TGTTGTGTGATTCTATGTTCGTC 57.161 39.130 0.00 0.00 0.00 4.20
2247 2731 4.688879 TGTTGTGTGATTCTATGTTCGTCC 59.311 41.667 0.00 0.00 0.00 4.79
2248 2732 3.857052 TGTGTGATTCTATGTTCGTCCC 58.143 45.455 0.00 0.00 0.00 4.46
2249 2733 3.195661 GTGTGATTCTATGTTCGTCCCC 58.804 50.000 0.00 0.00 0.00 4.81
2250 2734 2.835156 TGTGATTCTATGTTCGTCCCCA 59.165 45.455 0.00 0.00 0.00 4.96
2251 2735 3.454447 TGTGATTCTATGTTCGTCCCCAT 59.546 43.478 0.00 0.00 0.00 4.00
2252 2736 3.809832 GTGATTCTATGTTCGTCCCCATG 59.190 47.826 0.00 0.00 0.00 3.66
2253 2737 3.181455 TGATTCTATGTTCGTCCCCATGG 60.181 47.826 4.14 4.14 0.00 3.66
2254 2738 1.128200 TCTATGTTCGTCCCCATGGG 58.872 55.000 25.30 25.30 46.11 4.00
2265 2749 3.012153 CCCATGGGGTTCTCTCTGA 57.988 57.895 24.53 0.00 38.25 3.27
2266 2750 0.543749 CCCATGGGGTTCTCTCTGAC 59.456 60.000 24.53 0.00 38.25 3.51
2267 2751 1.577736 CCATGGGGTTCTCTCTGACT 58.422 55.000 2.85 0.00 0.00 3.41
2268 2752 1.912043 CCATGGGGTTCTCTCTGACTT 59.088 52.381 2.85 0.00 0.00 3.01
2269 2753 3.107601 CCATGGGGTTCTCTCTGACTTA 58.892 50.000 2.85 0.00 0.00 2.24
2270 2754 3.133721 CCATGGGGTTCTCTCTGACTTAG 59.866 52.174 2.85 0.00 0.00 2.18
2271 2755 2.821437 TGGGGTTCTCTCTGACTTAGG 58.179 52.381 0.00 0.00 0.00 2.69
2272 2756 1.483004 GGGGTTCTCTCTGACTTAGGC 59.517 57.143 0.00 0.00 0.00 3.93
2273 2757 2.462723 GGGTTCTCTCTGACTTAGGCT 58.537 52.381 0.00 0.00 0.00 4.58
2274 2758 2.167487 GGGTTCTCTCTGACTTAGGCTG 59.833 54.545 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.967319 GGCATTGGATTAGCCGAGAA 58.033 50.000 0.00 0.00 38.86 2.87
8 9 2.290641 CTGTTACGGCATTGGATTAGCC 59.709 50.000 0.00 0.00 44.89 3.93
24 25 2.361789 GGCGAGGTAAAATGCCTGTTA 58.638 47.619 0.00 0.00 44.16 2.41
63 64 2.196229 CGGGAGACGGAGGGAGAT 59.804 66.667 0.00 0.00 39.42 2.75
119 121 3.063997 CACGAAGCTTTGTGTTTGAGAGT 59.936 43.478 30.99 0.00 37.70 3.24
130 132 1.013596 TGGTGTGTCACGAAGCTTTG 58.986 50.000 12.41 12.41 34.83 2.77
134 136 0.944386 ATGTTGGTGTGTCACGAAGC 59.056 50.000 0.00 0.00 33.17 3.86
137 139 1.163420 GGCATGTTGGTGTGTCACGA 61.163 55.000 0.00 0.00 34.83 4.35
138 140 1.282570 GGCATGTTGGTGTGTCACG 59.717 57.895 0.00 0.00 34.83 4.35
153 155 1.739035 CGTTTCTCGCTCTTATGGGCA 60.739 52.381 0.94 0.00 0.00 5.36
190 196 4.332428 TGATATCTCACAGTCCATGCTG 57.668 45.455 3.98 0.00 41.92 4.41
250 256 3.692406 GGTTCCGGACTCAGCGGT 61.692 66.667 1.83 0.00 0.00 5.68
256 262 4.754667 GGGTGCGGTTCCGGACTC 62.755 72.222 28.38 24.00 46.99 3.36
287 316 2.098614 TGTGCTGTGTTGAATTGTGGT 58.901 42.857 0.00 0.00 0.00 4.16
289 318 3.117794 CCTTGTGCTGTGTTGAATTGTG 58.882 45.455 0.00 0.00 0.00 3.33
290 319 3.023119 TCCTTGTGCTGTGTTGAATTGT 58.977 40.909 0.00 0.00 0.00 2.71
311 346 3.999764 ATTATGCCCCCTTTGGAGAAT 57.000 42.857 0.00 0.00 35.39 2.40
317 352 6.098124 TGTTCAGAATTATTATGCCCCCTTTG 59.902 38.462 0.00 0.00 0.00 2.77
318 353 6.201591 TGTTCAGAATTATTATGCCCCCTTT 58.798 36.000 0.00 0.00 0.00 3.11
319 354 5.776358 TGTTCAGAATTATTATGCCCCCTT 58.224 37.500 0.00 0.00 0.00 3.95
320 355 5.402054 TGTTCAGAATTATTATGCCCCCT 57.598 39.130 0.00 0.00 0.00 4.79
321 356 6.478512 TTTGTTCAGAATTATTATGCCCCC 57.521 37.500 0.00 0.00 0.00 5.40
322 357 5.985530 GCTTTGTTCAGAATTATTATGCCCC 59.014 40.000 0.00 0.00 0.00 5.80
323 358 6.572519 TGCTTTGTTCAGAATTATTATGCCC 58.427 36.000 0.00 0.00 0.00 5.36
324 359 7.545265 TGTTGCTTTGTTCAGAATTATTATGCC 59.455 33.333 0.00 0.00 0.00 4.40
325 360 8.375465 GTGTTGCTTTGTTCAGAATTATTATGC 58.625 33.333 0.00 0.00 0.00 3.14
326 361 9.409312 TGTGTTGCTTTGTTCAGAATTATTATG 57.591 29.630 0.00 0.00 0.00 1.90
327 362 9.630098 CTGTGTTGCTTTGTTCAGAATTATTAT 57.370 29.630 0.00 0.00 0.00 1.28
328 363 8.081633 CCTGTGTTGCTTTGTTCAGAATTATTA 58.918 33.333 0.00 0.00 0.00 0.98
329 364 6.925165 CCTGTGTTGCTTTGTTCAGAATTATT 59.075 34.615 0.00 0.00 0.00 1.40
330 365 6.265196 TCCTGTGTTGCTTTGTTCAGAATTAT 59.735 34.615 0.00 0.00 0.00 1.28
331 366 5.592282 TCCTGTGTTGCTTTGTTCAGAATTA 59.408 36.000 0.00 0.00 0.00 1.40
332 367 4.402155 TCCTGTGTTGCTTTGTTCAGAATT 59.598 37.500 0.00 0.00 0.00 2.17
333 368 3.953612 TCCTGTGTTGCTTTGTTCAGAAT 59.046 39.130 0.00 0.00 0.00 2.40
334 369 3.351740 TCCTGTGTTGCTTTGTTCAGAA 58.648 40.909 0.00 0.00 0.00 3.02
335 370 2.997980 TCCTGTGTTGCTTTGTTCAGA 58.002 42.857 0.00 0.00 0.00 3.27
336 371 3.996150 ATCCTGTGTTGCTTTGTTCAG 57.004 42.857 0.00 0.00 0.00 3.02
337 372 3.698539 TCAATCCTGTGTTGCTTTGTTCA 59.301 39.130 0.00 0.00 0.00 3.18
338 373 4.293415 CTCAATCCTGTGTTGCTTTGTTC 58.707 43.478 0.00 0.00 0.00 3.18
339 374 3.068590 CCTCAATCCTGTGTTGCTTTGTT 59.931 43.478 0.00 0.00 0.00 2.83
340 375 2.624838 CCTCAATCCTGTGTTGCTTTGT 59.375 45.455 0.00 0.00 0.00 2.83
351 386 0.469070 CAGCCTCTCCCTCAATCCTG 59.531 60.000 0.00 0.00 0.00 3.86
354 389 0.467804 GGTCAGCCTCTCCCTCAATC 59.532 60.000 0.00 0.00 0.00 2.67
357 392 2.230189 ATCGGTCAGCCTCTCCCTCA 62.230 60.000 0.00 0.00 0.00 3.86
361 396 1.439644 GACATCGGTCAGCCTCTCC 59.560 63.158 0.00 0.00 43.73 3.71
362 397 1.064946 CGACATCGGTCAGCCTCTC 59.935 63.158 0.00 0.00 44.54 3.20
458 523 2.504585 ACCCGGGTTATCTTCTTCTTCC 59.495 50.000 24.16 0.00 0.00 3.46
466 546 0.620700 AGGCTGACCCGGGTTATCTT 60.621 55.000 30.89 13.55 39.21 2.40
540 620 1.065102 CATCGAAATCCAGGCAAGCAG 59.935 52.381 0.00 0.00 0.00 4.24
734 1078 2.780693 CTCCTCCTCCTCCACCCA 59.219 66.667 0.00 0.00 0.00 4.51
738 1089 2.328589 CCTCCCTCCTCCTCCTCCA 61.329 68.421 0.00 0.00 0.00 3.86
762 1113 1.004394 GTAAAAGAGGTGGGGAGTGGG 59.996 57.143 0.00 0.00 0.00 4.61
804 1157 3.172106 TCCGGTGTTGGGCTTGGA 61.172 61.111 0.00 0.00 0.00 3.53
805 1158 2.983592 GTCCGGTGTTGGGCTTGG 60.984 66.667 0.00 0.00 0.00 3.61
807 1160 2.366153 AATGGTCCGGTGTTGGGCTT 62.366 55.000 0.00 0.00 32.87 4.35
808 1161 2.366153 AAATGGTCCGGTGTTGGGCT 62.366 55.000 0.00 0.00 32.87 5.19
809 1162 1.873270 GAAATGGTCCGGTGTTGGGC 61.873 60.000 0.00 0.00 0.00 5.36
821 1174 3.264845 AGGCCCGTGGGAAATGGT 61.265 61.111 9.72 0.00 37.50 3.55
895 1252 0.029681 ATGGGAGGTGTGCCCTAGAT 60.030 55.000 0.00 0.00 46.51 1.98
951 1309 4.194720 CGGCGAGGAGAACGGAGG 62.195 72.222 0.00 0.00 0.00 4.30
953 1311 2.674033 TTCGGCGAGGAGAACGGA 60.674 61.111 10.46 0.00 0.00 4.69
1035 1453 1.792949 CAACCACGACAACAGTAGAGC 59.207 52.381 0.00 0.00 0.00 4.09
1037 1463 2.542205 CGACAACCACGACAACAGTAGA 60.542 50.000 0.00 0.00 0.00 2.59
1121 1551 4.660938 GTCTGGCCCCGCACCTTT 62.661 66.667 0.00 0.00 0.00 3.11
1311 1744 1.148310 CACAGCTACTGGGAAACACG 58.852 55.000 0.00 0.00 36.97 4.49
1318 1751 0.537188 AACGGATCACAGCTACTGGG 59.463 55.000 0.00 0.00 36.00 4.45
1319 1752 2.386661 AAACGGATCACAGCTACTGG 57.613 50.000 0.00 0.00 35.51 4.00
1338 1771 8.424133 TCTTCTTCTTAGCATGCATACTGAATA 58.576 33.333 21.98 6.86 0.00 1.75
1339 1772 7.226325 GTCTTCTTCTTAGCATGCATACTGAAT 59.774 37.037 21.98 0.00 0.00 2.57
1340 1773 6.536582 GTCTTCTTCTTAGCATGCATACTGAA 59.463 38.462 21.98 14.56 0.00 3.02
1341 1774 6.045318 GTCTTCTTCTTAGCATGCATACTGA 58.955 40.000 21.98 7.78 0.00 3.41
1362 1802 9.073475 GTCAATTACAGATACTAGATCAGGTCT 57.927 37.037 0.00 0.00 41.11 3.85
1363 1803 9.073475 AGTCAATTACAGATACTAGATCAGGTC 57.927 37.037 0.00 0.00 0.00 3.85
1364 1804 8.855110 CAGTCAATTACAGATACTAGATCAGGT 58.145 37.037 0.00 0.00 0.00 4.00
1372 1812 9.586435 CAACATCACAGTCAATTACAGATACTA 57.414 33.333 0.00 0.00 0.00 1.82
1386 1826 5.957842 TTTCCATTACCAACATCACAGTC 57.042 39.130 0.00 0.00 0.00 3.51
1464 1907 3.058160 GCAGACCGCCACAAGCAT 61.058 61.111 0.00 0.00 44.04 3.79
1475 1918 5.688176 GTCGATGAAATAGTAGAAGCAGACC 59.312 44.000 0.00 0.00 0.00 3.85
1476 1919 6.500041 AGTCGATGAAATAGTAGAAGCAGAC 58.500 40.000 0.00 0.00 0.00 3.51
1486 1929 8.942338 TTGCAACTTATAGTCGATGAAATAGT 57.058 30.769 0.00 0.00 0.00 2.12
1493 1936 8.988064 ATAGGTATTGCAACTTATAGTCGATG 57.012 34.615 0.00 0.00 0.00 3.84
1523 1968 7.637229 TCGTTCTAATCAGCACTGTAGTATAC 58.363 38.462 0.00 0.00 43.42 1.47
1524 1969 7.797038 TCGTTCTAATCAGCACTGTAGTATA 57.203 36.000 0.00 0.00 0.00 1.47
1525 1970 6.694877 TCGTTCTAATCAGCACTGTAGTAT 57.305 37.500 0.00 0.00 0.00 2.12
1526 1971 6.505044 TTCGTTCTAATCAGCACTGTAGTA 57.495 37.500 0.00 0.00 0.00 1.82
1527 1972 5.386958 TTCGTTCTAATCAGCACTGTAGT 57.613 39.130 0.00 0.00 0.00 2.73
1528 1973 7.197017 ACTATTCGTTCTAATCAGCACTGTAG 58.803 38.462 0.00 0.00 0.00 2.74
1529 1974 7.096884 ACTATTCGTTCTAATCAGCACTGTA 57.903 36.000 0.00 0.00 0.00 2.74
1530 1975 5.967088 ACTATTCGTTCTAATCAGCACTGT 58.033 37.500 0.00 0.00 0.00 3.55
1531 1976 6.893958 AACTATTCGTTCTAATCAGCACTG 57.106 37.500 0.00 0.00 0.00 3.66
1532 1977 6.697892 GCTAACTATTCGTTCTAATCAGCACT 59.302 38.462 0.00 0.00 37.05 4.40
1533 1978 6.697892 AGCTAACTATTCGTTCTAATCAGCAC 59.302 38.462 0.00 0.00 37.05 4.40
1535 1980 6.918569 TCAGCTAACTATTCGTTCTAATCAGC 59.081 38.462 0.00 0.00 37.05 4.26
1536 1981 8.747666 GTTCAGCTAACTATTCGTTCTAATCAG 58.252 37.037 0.00 0.00 37.05 2.90
1539 1985 8.997621 TTGTTCAGCTAACTATTCGTTCTAAT 57.002 30.769 0.00 0.00 38.99 1.73
1551 1997 6.327934 GCATTGATTCATTGTTCAGCTAACT 58.672 36.000 9.58 0.00 38.99 2.24
1552 1998 5.228635 CGCATTGATTCATTGTTCAGCTAAC 59.771 40.000 9.58 0.00 38.67 2.34
1563 2009 2.159338 GGCAGTCACGCATTGATTCATT 60.159 45.455 0.00 0.00 36.32 2.57
1566 2012 0.804364 TGGCAGTCACGCATTGATTC 59.196 50.000 0.00 0.00 36.32 2.52
1567 2013 0.806868 CTGGCAGTCACGCATTGATT 59.193 50.000 6.28 0.00 36.32 2.57
1569 2015 0.534877 AACTGGCAGTCACGCATTGA 60.535 50.000 22.31 0.00 0.00 2.57
1582 2028 3.311966 CAAAAAGAGCTAAGCAACTGGC 58.688 45.455 0.00 0.00 45.30 4.85
1583 2029 3.005155 AGCAAAAAGAGCTAAGCAACTGG 59.995 43.478 0.00 0.00 41.32 4.00
1585 2031 3.633986 ACAGCAAAAAGAGCTAAGCAACT 59.366 39.130 0.00 0.00 41.14 3.16
1586 2032 3.969899 ACAGCAAAAAGAGCTAAGCAAC 58.030 40.909 0.00 0.00 41.14 4.17
1587 2033 4.362279 CAACAGCAAAAAGAGCTAAGCAA 58.638 39.130 0.00 0.00 41.14 3.91
1589 2035 2.728318 GCAACAGCAAAAAGAGCTAAGC 59.272 45.455 0.00 0.00 41.14 3.09
1590 2036 4.234530 AGCAACAGCAAAAAGAGCTAAG 57.765 40.909 0.00 0.00 41.14 2.18
1593 2039 3.192466 CAAAGCAACAGCAAAAAGAGCT 58.808 40.909 0.00 0.00 44.62 4.09
1594 2040 2.931969 ACAAAGCAACAGCAAAAAGAGC 59.068 40.909 0.00 0.00 0.00 4.09
1595 2041 4.427312 AGACAAAGCAACAGCAAAAAGAG 58.573 39.130 0.00 0.00 0.00 2.85
1600 2048 2.013400 TCGAGACAAAGCAACAGCAAA 58.987 42.857 0.00 0.00 0.00 3.68
1640 2088 6.819284 AGAAGCAAATCCAAATGAAGAAACA 58.181 32.000 0.00 0.00 0.00 2.83
1641 2089 7.719778 AAGAAGCAAATCCAAATGAAGAAAC 57.280 32.000 0.00 0.00 0.00 2.78
1644 2092 6.930722 GGAAAAGAAGCAAATCCAAATGAAGA 59.069 34.615 0.00 0.00 0.00 2.87
1645 2093 6.707161 TGGAAAAGAAGCAAATCCAAATGAAG 59.293 34.615 0.00 0.00 37.24 3.02
1648 2096 6.864360 TTGGAAAAGAAGCAAATCCAAATG 57.136 33.333 3.21 0.00 44.75 2.32
1679 2131 2.642427 TGCAAATCGTCACTGCCATAT 58.358 42.857 0.00 0.00 35.13 1.78
1680 2132 2.106477 TGCAAATCGTCACTGCCATA 57.894 45.000 0.00 0.00 35.13 2.74
1739 2191 5.739752 TCGGCATACAAATCAATCTCAAG 57.260 39.130 0.00 0.00 0.00 3.02
1805 2257 6.474819 AACCAACCGTTTTGAAAAGAAAAG 57.525 33.333 0.00 0.00 0.00 2.27
1839 2291 3.808726 ACACGCACAAGGATAAACGTTTA 59.191 39.130 22.12 22.12 0.00 2.01
1842 2294 1.873698 ACACGCACAAGGATAAACGT 58.126 45.000 0.00 0.00 0.00 3.99
1843 2295 2.961522 AACACGCACAAGGATAAACG 57.038 45.000 0.00 0.00 0.00 3.60
1846 2304 4.576873 TCAGAAAAACACGCACAAGGATAA 59.423 37.500 0.00 0.00 0.00 1.75
1979 2449 9.471702 AAATAAATGACTTCTCATTCACAGGAT 57.528 29.630 0.00 0.00 44.93 3.24
2053 2523 7.039714 AGCACAAAACTAGAAAATAAAGAGGGG 60.040 37.037 0.00 0.00 0.00 4.79
2095 2565 7.096551 AGCGACATAAAATGCCAACTAAAAAT 58.903 30.769 0.00 0.00 0.00 1.82
2100 2570 5.182190 TGAAAGCGACATAAAATGCCAACTA 59.818 36.000 0.00 0.00 0.00 2.24
2102 2572 4.233789 TGAAAGCGACATAAAATGCCAAC 58.766 39.130 0.00 0.00 0.00 3.77
2117 2587 3.065371 ACTGACAAAAACCTCTGAAAGCG 59.935 43.478 0.00 0.00 0.00 4.68
2158 2642 3.636300 AGTCAAATGTTTAGTTGCAGCCA 59.364 39.130 0.00 0.00 32.23 4.75
2159 2643 4.243007 AGTCAAATGTTTAGTTGCAGCC 57.757 40.909 0.00 0.00 32.23 4.85
2160 2644 6.035975 ACAAAAGTCAAATGTTTAGTTGCAGC 59.964 34.615 0.00 0.00 32.23 5.25
2161 2645 7.393327 CACAAAAGTCAAATGTTTAGTTGCAG 58.607 34.615 0.00 0.00 32.23 4.41
2162 2646 6.312426 CCACAAAAGTCAAATGTTTAGTTGCA 59.688 34.615 0.00 0.00 32.23 4.08
2163 2647 6.238076 CCCACAAAAGTCAAATGTTTAGTTGC 60.238 38.462 0.00 0.00 32.23 4.17
2164 2648 6.816140 ACCCACAAAAGTCAAATGTTTAGTTG 59.184 34.615 0.00 0.00 33.40 3.16
2165 2649 6.941857 ACCCACAAAAGTCAAATGTTTAGTT 58.058 32.000 0.00 0.00 0.00 2.24
2166 2650 6.379988 AGACCCACAAAAGTCAAATGTTTAGT 59.620 34.615 0.00 0.00 35.38 2.24
2167 2651 6.697019 CAGACCCACAAAAGTCAAATGTTTAG 59.303 38.462 0.00 0.00 35.38 1.85
2168 2652 6.153680 ACAGACCCACAAAAGTCAAATGTTTA 59.846 34.615 0.00 0.00 35.38 2.01
2169 2653 5.046663 ACAGACCCACAAAAGTCAAATGTTT 60.047 36.000 0.00 0.00 35.38 2.83
2170 2654 4.466015 ACAGACCCACAAAAGTCAAATGTT 59.534 37.500 0.00 0.00 35.38 2.71
2171 2655 4.023291 ACAGACCCACAAAAGTCAAATGT 58.977 39.130 0.00 0.00 35.38 2.71
2186 2670 0.966920 TCTCCAACGAAGACAGACCC 59.033 55.000 0.00 0.00 0.00 4.46
2204 2688 5.343307 ACATAAAGCAATGAAATGGGGTC 57.657 39.130 1.26 0.00 0.00 4.46
2232 2716 3.403038 CCATGGGGACGAACATAGAATC 58.597 50.000 2.85 0.00 35.59 2.52
2233 2717 3.492102 CCATGGGGACGAACATAGAAT 57.508 47.619 2.85 0.00 35.59 2.40
2248 2732 1.577736 AGTCAGAGAGAACCCCATGG 58.422 55.000 4.14 4.14 37.80 3.66
2249 2733 3.133721 CCTAAGTCAGAGAGAACCCCATG 59.866 52.174 0.00 0.00 0.00 3.66
2250 2734 3.379452 CCTAAGTCAGAGAGAACCCCAT 58.621 50.000 0.00 0.00 0.00 4.00
2251 2735 2.821437 CCTAAGTCAGAGAGAACCCCA 58.179 52.381 0.00 0.00 0.00 4.96
2252 2736 1.483004 GCCTAAGTCAGAGAGAACCCC 59.517 57.143 0.00 0.00 0.00 4.95
2253 2737 2.167487 CAGCCTAAGTCAGAGAGAACCC 59.833 54.545 0.00 0.00 0.00 4.11
2254 2738 3.518634 CAGCCTAAGTCAGAGAGAACC 57.481 52.381 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.