>input_sequence_85264
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-------------------------------------------ATGGGTAACGATCTGC--------------CCCCCCT
CGACCCCTATCTGC--------TCTACTGTTGTCGTGGTTGTC---GGTGCTGACGCGGCGGTGG-TGCCTGCCTTCAGG
TAAGGTGCACGGATCGCTGGCTCGCGCCGGAAAGGTGCGGGGCCAGACGCCCAAGGTGGCGAAGCAGGACAAGAAGAAGC
AGCCGCGCGGCCGCGCCCACAAGCGCATCCAGTACAACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGC
GGCCCCAACTCCTCCGAGAAGTAG--------------------------------------------------------
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>chr6D_1_TraesCS6D01G356300
AAATTCTCGGCTAATCCAATGCCGTAACAGGCATTTTACCTCGCCCATGTCTGCGAGCAGGAGATCTCCCTCCGTCTCCC
GCTCCAGAGCAACATCTGCGAGG-GGAAAACAAAACTGAAACTCTCAAACACAAAGCTTCGTGACACACCAACATGCCCA
TAAGAGCGAGAAACG-AGGTGAG---CTCCTCACCCAGCATGGACTGTGAGATATCACAGCCGATCCAGTGGTGGCCGTG
CTCCGTCAGCGTCTCACCGCTGAGTCCGGAACCGCACCCTGCGATTCACA-----------------------CAACCAC
AATTCAACACAGCACA------AGGATTCTCCAAAGGGGGCATAATAATTCTGAACAAAGCAACACAGGATTGAGGGA--
----------------------------GAGGCTGACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGC
GAGCAGCTCCAGCGCCCTCTCCGAGATCCTCGCCTGCGAAGAG---------------GAAGAAGAAGATAACCCGGGTC
AGCCTCACCACGAACCGCCGGAGCTCCCCACACAACACACGACGAGAGGGGGGCTTGGGCTGCTTGCCTGGATTTCGATG
ATG-----------------------------------------------------------------------------
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-------------------CGGGAGGAGGTGGTGTACTTGCGCGCCTCCGACTCGTTGTAGAATATCTCCGGCGGCGCCT
GCACCTCCGGCCGCGGCATCTCGCCCC------CTCTCTATCTCCTCCGCCGCCGCTGAGCTCGCTCCCGTGCTCGCCCG
CCGCCGCCGCCGCCGC--CGAGGGTTCTGTTCTCTCGT-------GGGTGGAGGAGGAGGAGGGAGGGGGTTCCCACTCC
CCAC--CTCTTTTACGGGCCCCTAACGGGCCACATCTCCAAGCCCAACACCGGACCATTTCCCACGGGCCTGCCAGCCCA
CGGCCCGCATAGC----AACGGAGCCCTCGCCTCTATAAAATCCCCCACCCATCTAGGGCACACCTCCCA-TCAGCAGAA
GCCGCCGACGCCGCCGCCGCCCGAGCGCCCTCCGTTCTCCTCGCCGAAGCG-----------------------------
-----------------CCCGCCGCTCCACCGCCGCAGCCGCCATGGGTAACGATCTGC--------------CCCCCCT
CGACCCCTATCTGC--------TCTACTGTTGTCGTGGTTGTC---GGTGCTGACGCGGCGGTGG-TGCCTGCCTTCAGG
TAAGGTGCACGGATCGCTGGCTCGCGCCGGAAAGGTGCGGGGCCAGACGCCCAAGGTGGCGAAGCAGGACAAGAAGAAGC
AGCCGCGCGGCCGCGCCCACAAGCGCATCCAGTACAACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGC
GGCCCCAACTCCTCCGAGAAGTAG---ATCTAGGTCGTCTCGCGCCAGCCCTCCTTTTTTTTTCGTGTTTCCCAGTAGCT
GTGATCCGTTTATTCAGTATGCATGC-------TAAGAAGAAGACCTGATCTAGTATCTGTAATTGACTGTGATGTTGGT
AATGGAAATCTCACTGCATTGTCCAGTTAATA-TTTGCCATATGCCTA-TTTATCCT-ATATTATCATGCTTGTGGCGGT
CTGCTTCTACTATTTCATC--GACTATAAGTTGCAATACCTATATATGTATACTACAGTGC-TGATTAGAACGAATAGTT
AGCTGAACAATGAATCAATGCGTGACTGCCAGTTGCTTAGC--TCTTTTTGCTGTTGCTTTGTCTCGATTTGAGAACTTT
TCAACTTTGTTTCTTC----ATTTGGATTTGCTTCTTTTCCAATTTGTGCATATGGCAGTGACGATTTGCAAATATTCAA
GCTGAACAGACCAAATCACAGGTCGTCTCTCTTGAGATTGATTTGTATGCCGATTATCCCGCTGAACCGAGCCATCACTT
TGTAGTTCTCTTTTTTCTTTTCTTTTCAAAACGGTTGGTTTTCTTTTGAATAAACG------TTTATCCTTGTGCGTGTT
TTTCTGAGCCTTCTCTGCCGTGTTGTGGTAACATCTCT-TTTTTTGATTGAT-----------TTTTTCCAGTATCAGGT
GATGAAACCTTGAAACAATCTTAGGACACCTTCTGACACAGTGCTGTTATCCTGTGAATGAGAAGTCATTTATTTTCTGA
TGATACAAAACTGCCCCACATTATGCTCATTGCATATATTTACCCCTCTTTATTTTCTAGTTTTGTGCTATCTCTGGACT
ACAGATTTTTAGTTGGCATTTTATGTCGCTTTCAGAGGTTTTTGTCAGTTTAAAACATTTTTTCCG--------------
TTGGCTGCAACTAAACATTTGACTTTTGTGGGTCTGTCTTCGTTGGAGACCCCATTTCATTGCTTTATGTTGTGTGATTC
TATGTTCGTCCCCATGGGGTTCTCTCTGACTTAGGCTG
>chr6B_1
AAACTCTCCGCCAATCCAGTGCCGCAGCACGCATCTTACCTCGCCCATGTCTGCGAGCAGGAGGTCACCCTCCGTCTCCC
GCTCCAGAGCAACATCTGCGAGGTGGAAAACAAAACTGAAGCTCTCAAGCAGAAACCTGAGTGACACAGCAACACGCCCA
TAAGAGCGAGGAACG-AGGTGAATTCCTCCTCACCAAGCATGGACCGCGAGATATCGCAGCCGATCCAGCGGTGCCCGTG
CTCCGTCAGCGTCTCGCCGCTAAGCCCGGAGCCGCACCCTGCCATTCGACACACAGGAC-CCATGATTGTAAACGCCAGC
AATTCATCAAGACGCAGGACCATGGTTTCTCTGT---------------------CAAAGCAACAGAGAATCGAGTAATT
CTATGGTGCTGTGGGTGAGCGTGGAGAGGAGGCTGACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGC
CAGCAGCTCCAGCGCCCTCTCGGAGATCCTCGCCTGCGGAGAAGAAGAAGAAGAACAAGAAGAAGGAGATAACCCGGGTC
AGCCTCACCGCTTGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGGGAGGAGGTGGTGTACTTGCGCGCCTCCGCCTCGTTGTAGAATATCTCCGGCGGCGCCT
GCACCTCCGGCCGCGGCATCTCGCCTCCCCTCTCTCTCTCTCTCCTCCGCCGCCGGTGGGCTCGCCCCTGTGCCCGCGCG
CCGCCGCCGCCGCCGC--CGAGGGTTCTGTTCTCTCGGGGGGTGGGGGAGGAGGAGGAGGAGGGAGGAGGTTTCCACTCC
CCCCATCTCTTTTACGGGCCCCTAACAGGCCACATCCACGGCCCCCCCT-CGGCCCAT---------GCCCAACGGCCCA
CGGCCCACATAAGAACGAACGGAGCCCTCGCCTCTATAAAATCTCCCACCCGTCTAGGGTTGATTCATCTGTCAGCAGAA
GCCGCCG---CCGCCGCCGCCCGAGCGCTCCCCGTTCTCGTCGCCGAAGCGCTCCCCCGCCGCTCGAGTGCTCCCCGTTC
TCGTCGCCGAAGCGCTCCCCGCCGCTCCACCGCCGCAGCCGCCATGGGTAACGATCTGCTCCTCCCCCTCTTTCCTCGCT
AGATCCCTATCTAC--------CCTAGTGTTGTCGTGGTTGTC---GGTGCTGACGCGGCGGTGG-TGCCTGCCTTCAGG
TAAGGTGCACGGATCGCTGGCGCGGGCCGGGAAGGTGCGGGGGCAGACGCCCAAGGTGGCGAAGCAGGACAAGAAGAAGC
AGCCGCGCGGCCGCGCCCACAAGCGCATCCAGTACAACAGGCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGC
GGCCCCAACTCCTCCGAGAAGTAGTAGATCTTGGTGGTCTCGCGCCAGCCCTCCTTTTTTTTTTGTTTT-----------
------CGTTC---CAGTATGCATGC-------TAAGAAGA---CCTAATCAAGTATCTGTAATTTACTGTGATGTTGGT
AATGGAAATCTCACTGCATTGTCCAGTTAATTTTTTGCCATATTCCTGTTTTATCTT-ATATTATCCTGCTTGTGGCAAT
CTGCTTCTGTTATTTTATC--CTCTGTAAGCTACAATAGCTGTATAC--------TGATTAGTGGTTAGAACGAATCCTT
AGCTGAACGATCCAGCATTAGTGTGCCAGTCTGTTTTTCTAGGTCTTGTTGCCGATGCTTTGTCTCGATTTGAAAACTTT
CCAACTTAA-TCTTTTTTAAATTTGGATTTGCTTCTTTTCCAGTTTGTGTTGATGGCAGTGACGATTTGCAAATATTCAA
GCTCAACAGACCAAATCACAGGTCATCTCTTTTGAGATTGATTTGTATGCCGATTATCCCGCTGAACC-AGCCATCACTT
TGAAGTTCCATATTTTTTTCTCTTTTGAAAAGGTTTGGTTTTCTTTTGAAAATTGGCAACTATGTATCCTTGTGCATTCT
TTTCTGAGCCTTCTCTGCCGTGTTATGTTAGCATCTCA-GTTTTTTTTTGATGATTTAATTGATTTTTACAGTATCACGT
GATGAAACCTTGAAACAATCTTAGGACACCTTCTGACACAGTGCTGTTTTCCTGTGAATGAGAAGTCATTTATTTTCTGA
TGATACAAAACTGCCCCACATTGTGCTCATTGCATATATTTATCCCTCTTTATTTTCTAGTTTTGTGCTATCTCTGGAGT
ACAGGTTGTCAATTGGCATTTTATGTGGCTTTTAGAGGTTTTTGTCTGTTTAAAACATTTTTTGTCCGTTGGCTGCAACT
TCT------------CATTTGACTTTAG-TGGTCCGTCTTCGCTGGAAATCCCATTTCATTGCTTTATGTTGTGT-----
--------------------------------------
>chr6D_22
---------------------CCGCAACAGGCATTTTACCTCGCCCATGTCTGCGAGCAGGAGGTCTCCCTCGGTCTCCC
GCTCCAGAGCAACATCTGCAAGG-GGAAAACAAAACTGAAGCCCTCAAACAGAAACCTAAGTGACACACCAACAAGTCTG
TAAGAGCAACAAACAAAGGTGAG---TTCCTCACCAAGCATGGACTGTGAGATATCACAGCCGATCCAATGATGCCCGTG
CTCCGTCAGCGTCTCGCCGCTAAGCCCGGAACTGCACCCTGCGAATCACAGCACACAGGACCATGATTGTAGACACCAGC
AATTCACCAAGACGCA------TGGTTTCTTTGT---------------------CAAAGCAACAGAGAATCGAGTAGTT
CTATGGTACTGTGGGTGAGCGTAGAGAGGAAGCTTACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGC
GAGCAGCTCCAGCGCCCTCTCGGAGATCCTCACCTGCGAAGAA---------------GGAAGAGGAGATAACCTGGGTC
AGCCTCACCAGGAACCACCTGAGCTCCCCACACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATG
ATG-----------------------------------------------------------------------------
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-------------------CGGGAGGAGGTGGTGTACTTGCGCGCCTCCGACTCGTTGTAGAAT----------------
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>chr3D_22
---------------------CCGCAACAGGCATTTTACCTCGCCCATGTCTGCGAGCAGGAGGTCTCCCTCGGTCTCCC
GCTCCAGAGCAACATCTGCAAGG-GGAAAACAAAACTGAAGCCCTCAAACAGAAACCTAAGTGACACACCAACAAGTCTG
TAAGAGCAACAAACAAAGGTGAG---TTCCTCACCAAGCATGGACTGTGAGATATCACAGCCGATCCAATGATGCCCGTG
CTCCGTCAGCGTCTCGCCGCTAAGCCCGGAACTGCACCCTGCGAATCACAGCACACAGGACCATGATTGTAGACACCAGC
AATTCACCAAGACGCA------TGGTTTCTTTGT---------------------CAAAGCAACAGAGAATCGAGTAGTT
CTATGGTACTGTGGGTGAGCGTAGAGAGGAAGCTTACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGC
GAGCAGCTCCAGCGCCCTCTCGGAGATCCTCACCTGCGAAGAA---------------GGAAGAGGAGATAACCCGGGTC
AGCCTCACCAGGAACCACCTGAGCTCCCCACACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATG
ATG-----------------------------------------------------------------------------
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-------------------CGGGAGGAGGTGGTGTACTTGCGCGCCTCCGACTCGTTGTAGAAT----------------
---------------------------------------------------------------------------GCGCG
CCGCCGGCGATGCACC----------------------------------------------------------------
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>chr3D_22
---------------------CCGCAACAGGCATTTTACCTCGCCCATGTCTGCGAGCAGGAGGTCTCCCTCGGTCTCCC
GCTCCAGAGCAACATCTGCAAGG-GGAAAACAAAACTGAAGCCCTCAAACAGAAACCTAAGTGACACACCAACAAGTCTG
TAAGAGCAACAAACAAAGGTGAG---TTCCTCACCAAGCATGGACTGTGAGATATCACAGCCGATCCAATGATGCCCGTG
CTCCGTCAGCGTCTCGCCGCTAAGCCCGGAACTGCACCCTGCGAATCACAGCACACAGGACCATGATTGTAGACACCAGC
AATTCACCAAGACGCA------TGGTTTCTTTGT---------------------CAAAGCAACAGAGAATCGAGTAGTT
CTATGGTACTGTGGGTGAGCGTAGAGAGGAAGCTTACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGC
GAGCAGCTCCAGCGCCCTCTCGGAGATCCTCACCTGCGAAGAA---------------GGAAGAGGAGATAACCCGGGTC
AGCCTCACCAGGAACCACCTGAGCTCCCCACACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATG
ATG-----------------------------------------------------------------------------
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-------------------CGGGAGGAGGTGGTGTACTTGCGCGCCTCCGACTCGTTGTAGAAT----------------
---------------------------------------------------------------------------GCGCG
CCGCCGGCGATGCACC----------------------------------------------------------------
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>chr1D_22
---------------------CCGCAACAGGCATTTTACCTCGCTCATGTCTGCGAGCAGGAGGTCTCCCTCGGTCTCCC
GCTCCAGAGCAACATCTGCAAGG-GGAAAACAAAACTGAAGCCCTCAAACAGAAACCTAAGTGACACACCAACAAGTCTG
TAAGAGCAACAAACAAAGGTGAG---TTCCTCACCAAGCATGGACTGTGAGATATCACAGCCGATCCAATGATGCCCGTG
CTCCGTCAGCGTCTCGCCGCTAAGCCCGGAACTGCACCCTGCGAATCACAGCACACAGGACCATGATTGTAGACACCAGC
AATTCACCAAGACGCA------TGGTTTCTTTGT---------------------CAAAGCAACAGAGAATCGAGTAGTT
CTATGGTACTGTGGGTGAGCGTAGAGAGGAAGCTTACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCGGGGAGCGC
GAGCAGCTCCAGCGCCCTCTCGGAGATCCTCACCTGCGAAGAA---------------GGAAGAGGAGATAACCCGGGTC
AGCCTCACCAGGAACCACCTGAGCTCCCCACACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATG
ATG-----------------------------------------------------------------------------
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-------------------CGGGAGGAGGTGGTGTACTTGCGCGCCTCCGACTCGTTGTAGAAT----------------
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>chr6A_368
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-------------------------------GCTCACCGATGTCGAGCAGCATCTTGGGGACGCCGTCGTCCGGGAGCGC
CAGCAGCTCCAGCGCCCTCTCGGAGATCCTCGCCTGCGAAGACG------------AAGAAGAAGGAGATAACCCGGGTC
AGCCTCACCAGGAACCACCTGAGCTCCCCACACAACACGCGACGAGAGGGGGGCTTGGGTTGCTTGCCTGGATTTCGATG
ATG-----------------------------------------------------------------------------
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-------------------CGGGAGGAGGTGGTGTACTTGCGCGCCTCCGACTCGTTGTAGAATATCTCCGGCGGGGCCT
GCACCTCCGGCCGCGGCATCTCGCCCC------CTCTCT----CCTCCGCCGCCGGTGAGCTCGCTCCTGTGCCCGCGCG
CCGCCGCCGCCGCTTCTGCGAGGGTTCTGTTCTCTCGGGGGT----------GGAGGAGGAGGGAGGAGGTCTCCACTCC
CCAC--CTCTTTTACGGGCCCCTAACGGGCCACGGGCT---------CT-CGGCCCAGCTCCCACGGGCCCCTCAGCCCA
CGGCCCGCATAAC----AACGGAGCCCTCCCCTCTATAAAATCTCCCACCCGTCTAGGGCACACCTCCCA-TCAGCAGAA
GCCGCCGCCGCCCGAGCACTCCG------------TCTCCTCGCCGAAGCGC----------------------------
-------------------CGCCGCTCCACCGCCGCAGCCGCCATGGGTAACGCTCTGC--------------TCCCCCT
CTTCCCCCCGCTAGATCCCTATCCTACTGTTGCCGTGGTTCTTCTTGGTGCTGACCCGGCGGTGCCTGCCTGCCTTCAGG
TAAGGTGCACGGATCGCTGGCCCGAGCCGGGAAGGTGCGGGGCCAGACGCCCAAGGTGGCGAAGCAGGACAAGAAGAAGC
AGCCGCGCGGCCGCGCCCACAAGCGCATCCAGTACAACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGC
GGCCCCAACTCGTCCGAGA---AGTAGATCTAGGTGGTCTCGCGCCAGCCCTCCTTTTTTTTGTTTCCCGT-CAGTAGCT
GTGATCCGTTC---CGGTATGCATGCTAAGAAGTAAGAAGA---CCTAATCAAGTATCTGTAATTTTCTGTGATGTTGGT
AATGGAAATCTCACTGCATTGTCCAGTTAATA-TTTGCCATATGCCTA-TTTTATCTCATATTATCCTGCTTGTGGCAAC
CTGCTTCTGTTATTTTATATGGTCTGTAAGCTACAATAGCTGTATACCAGAGTACTGATTAGTGGTTGGAACGAATCCTT
AGCTGAATGACCCAGCAATAGTGTACCAGCCAGTTTTTTTGGGTCTTGTTGCTGATGCTTTGTCTGGATTTGAAAACTTC
TGTACTTCCTTCTTTTTTAAATTTGGATTTGCTTCTTTTCCAGTTTGTGCTGATGGCAGTGAGGATATGCAAATATTCAA
GCTCAACAGACCAAATCACAGGTCGTCTCTTTTGAGATTGATTTGTATGCCGATTATCCCACTGAACCGAGCCATCACTT
TGAAGTTCCATTTTTTT----CTTTTGAAAACGGTTGGTTTTCTTTTGAAAAATGG------TGTATCGTTGTGCGTGTT
TTTCCGAGCCTTCTCTGCCGTGTTGTGGTAACAGCTCTCTTTTTCGATTGAT-----------TGTTTCCAGTATCAGGT
GATGAAACCTTGAAACAATCTTAGGACACCTTCTGACACAGTGCTGTTTTCCTGTGAATGAGAAGTCATTTATTTTCTGA
TGATACACAACTGGCTCACGTTGTGCTCATTGCATATATTTATCCCTCTTTAATTTTTTAGT-----------------T
ACAGGTTTTCAATTGAAATTTTATGCAGCTTTCTGAGCTTTTTGTCAGTTTAAACATTTTTTTCTG--------------
TCC------------CATTTGACTTTTGTTGGTCTGTCTTTGTTGGAAACTCCATTTCATTGTTGTAT------------
--------------------------------------
>SNPs
---S----S--S------S-----S--------------------------------------S----------------
----------------------------------------S----------S---S--SS--------------S-----
-----------------------------------S--------------------------------------S-----
---------------S-----S--S--------------------------------------------------S-SS-
------S--SSS-S--------S--S-----SSSSSSSSSSSSSSSSSSSSSSSS----------S--S--S---SS---
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---------------------S--------------------S----------------------S--------------
--------------------------------------S--------------------S--------------------
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---------------------------------------S---------------S------------S----S---S--
-------------------------------------S----------S------------------S----S-------
------------------------------------SS-SSS---SS-SS---S----S-----------SSS-------
-----------S-------------------------------S-------S----------------------------
-------S--------------------S-S-------------------------------------------------
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------------S---------S---------------------------------------------------------
---------------------S--S-----S-------------------------------------------------
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-----------------------------------S---------------------------S--S--SSS--------
----------SSSS---------------------------SSS---S---S-------------S--------------
------------------------------------------------------------------S----------SS-
--------SS-----S------S--S----S-S-----S--S----SSSSSSSSSSSS-SS---S-----------SS--
--------S--SS-S----SSSSS--SSS-SSS-SS--SSS------S------S------------------S------
-------SS--SS--S--------------------------S-------SS----------------------------
---S--------------------------S-------------------------------------------------
--S-----SS------S--S------S-----------------------S--SS--------S----------------
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------------------------------------------------S-------------------------------
----------------------S-------------------S-----------------------------------S-
----S----S-S--------------S-------------------------------------S---------------
-SSSSSSSSSSSSSS--------------S-----------------S---------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_546
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----------------------------------------------GCCTGCGAAGAGGAAGAAGA--------------
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>reverse_2015
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--------------TCAATGCGTGACTGCCAGTT----------------------------------------------
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