Multiple sequence alignment - TraesCS6D01G356100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G356100 chr6D 100.000 2912 0 0 1 2912 450613600 450616511 0.000000e+00 5378.0
1 TraesCS6D01G356100 chr6A 92.649 2748 139 23 1 2729 596128759 596131462 0.000000e+00 3897.0
2 TraesCS6D01G356100 chr6A 94.253 174 8 2 2725 2898 596141046 596141217 6.190000e-67 265.0
3 TraesCS6D01G356100 chr6B 95.167 1738 63 6 209 1928 684219411 684221145 0.000000e+00 2724.0
4 TraesCS6D01G356100 chr6B 85.566 866 82 25 2068 2893 684375461 684376323 0.000000e+00 867.0
5 TraesCS6D01G356100 chr6B 89.557 316 20 8 2037 2343 684221286 684221597 3.520000e-104 388.0
6 TraesCS6D01G356100 chr6B 87.687 268 20 2 2336 2590 684245232 684245499 1.700000e-77 300.0
7 TraesCS6D01G356100 chr7D 83.333 282 36 10 2211 2488 568379506 568379780 1.730000e-62 250.0
8 TraesCS6D01G356100 chr5A 82.168 286 39 9 2208 2488 547167862 547167584 4.850000e-58 235.0
9 TraesCS6D01G356100 chr5A 81.068 206 32 6 125 329 691936639 691936838 1.080000e-34 158.0
10 TraesCS6D01G356100 chr2D 82.332 283 39 10 2210 2488 638774725 638775000 4.850000e-58 235.0
11 TraesCS6D01G356100 chr2D 79.167 264 44 9 62 322 158103884 158104139 3.860000e-39 172.0
12 TraesCS6D01G356100 chr4A 82.206 281 41 7 2210 2488 647262670 647262397 1.740000e-57 233.0
13 TraesCS6D01G356100 chr4A 91.781 73 6 0 247 319 699041784 699041856 5.130000e-18 102.0
14 TraesCS6D01G356100 chr5B 81.979 283 39 9 2211 2488 706981476 706981201 2.260000e-56 230.0
15 TraesCS6D01G356100 chr7A 80.212 283 42 11 2212 2488 570143769 570143495 1.770000e-47 200.0
16 TraesCS6D01G356100 chr1D 79.522 293 49 8 2213 2501 41864999 41864714 6.370000e-47 198.0
17 TraesCS6D01G356100 chr1D 79.487 195 33 7 115 307 298623991 298624180 6.550000e-27 132.0
18 TraesCS6D01G356100 chr4D 87.129 101 10 3 311 409 323534446 323534545 8.530000e-21 111.0
19 TraesCS6D01G356100 chr4B 85.000 100 12 3 311 409 404107415 404107512 6.640000e-17 99.0
20 TraesCS6D01G356100 chr3B 92.188 64 5 0 346 409 671373649 671373586 1.110000e-14 91.6
21 TraesCS6D01G356100 chr2A 87.500 80 8 2 247 325 707744664 707744586 1.110000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G356100 chr6D 450613600 450616511 2911 False 5378 5378 100.000 1 2912 1 chr6D.!!$F1 2911
1 TraesCS6D01G356100 chr6A 596128759 596131462 2703 False 3897 3897 92.649 1 2729 1 chr6A.!!$F1 2728
2 TraesCS6D01G356100 chr6B 684219411 684221597 2186 False 1556 2724 92.362 209 2343 2 chr6B.!!$F3 2134
3 TraesCS6D01G356100 chr6B 684375461 684376323 862 False 867 867 85.566 2068 2893 1 chr6B.!!$F2 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 646 0.537188 AGTTCGGCATCTCGGTGATT 59.463 50.000 0.00 0.00 32.05 2.57 F
794 822 1.001378 CCAAGAAGCCGACAAAAGTGG 60.001 52.381 0.00 0.00 0.00 4.00 F
945 978 1.375652 CAGCCAGTCAGCAGGAGTG 60.376 63.158 6.32 6.32 44.99 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1572 0.100146 GGTTGTCGCCGTAGTAGAGG 59.900 60.0 0.0 0.0 0.00 3.69 R
1665 1707 0.907704 TGGGGTAGACCTTGACGCAT 60.908 55.0 0.0 0.0 40.03 4.73 R
2852 3037 0.249398 CCTGAACCTTCCTACACCGG 59.751 60.0 0.0 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 1.399440 TCGTCTCGTCCATTACCTTCG 59.601 52.381 0.00 0.00 0.00 3.79
31 33 3.621715 GTCCATTACCTTCGTCATCAACC 59.378 47.826 0.00 0.00 0.00 3.77
33 35 4.712829 TCCATTACCTTCGTCATCAACCTA 59.287 41.667 0.00 0.00 0.00 3.08
45 47 3.706594 TCATCAACCTATCCACTGACTCC 59.293 47.826 0.00 0.00 0.00 3.85
46 48 2.467880 TCAACCTATCCACTGACTCCC 58.532 52.381 0.00 0.00 0.00 4.30
56 58 1.153667 CTGACTCCCAGAAGCTCGC 60.154 63.158 0.00 0.00 45.78 5.03
59 61 2.511145 CTCCCAGAAGCTCGCTGC 60.511 66.667 10.26 0.00 43.29 5.25
71 73 1.079543 TCGCTGCTGAGAAGAAGGC 60.080 57.895 0.00 0.00 0.00 4.35
83 85 2.435059 GAAGGCTGCCGAGGACAC 60.435 66.667 13.96 0.00 0.00 3.67
123 125 1.078143 GGCTTCGATCTGGCCAACT 60.078 57.895 7.01 0.00 44.69 3.16
126 128 1.137086 GCTTCGATCTGGCCAACTAGA 59.863 52.381 7.01 0.00 0.00 2.43
136 138 5.580998 TCTGGCCAACTAGAGGGTATATAG 58.419 45.833 7.01 0.00 0.00 1.31
168 170 3.408634 CCGGTCCTGTTTATTTCTGTGT 58.591 45.455 0.00 0.00 0.00 3.72
169 171 3.818773 CCGGTCCTGTTTATTTCTGTGTT 59.181 43.478 0.00 0.00 0.00 3.32
174 176 3.564511 CTGTTTATTTCTGTGTTGGCCG 58.435 45.455 0.00 0.00 0.00 6.13
216 218 7.607250 AGATGTTTCTGCTATATGCCTAGTAC 58.393 38.462 0.00 0.00 42.00 2.73
220 222 4.648651 TCTGCTATATGCCTAGTACGTGA 58.351 43.478 0.00 0.00 42.00 4.35
398 400 1.204467 TCTGCGACATATGACAGTGCA 59.796 47.619 10.38 7.78 0.00 4.57
508 532 4.024302 GGTTACTGTAAAGTGTGAACTGGC 60.024 45.833 1.10 0.00 0.00 4.85
618 646 0.537188 AGTTCGGCATCTCGGTGATT 59.463 50.000 0.00 0.00 32.05 2.57
620 648 2.167693 AGTTCGGCATCTCGGTGATTTA 59.832 45.455 0.00 0.00 32.05 1.40
621 649 2.933906 GTTCGGCATCTCGGTGATTTAA 59.066 45.455 0.00 0.00 32.05 1.52
622 650 3.254470 TCGGCATCTCGGTGATTTAAA 57.746 42.857 0.00 0.00 32.05 1.52
623 651 3.601435 TCGGCATCTCGGTGATTTAAAA 58.399 40.909 0.00 0.00 32.05 1.52
624 652 4.004314 TCGGCATCTCGGTGATTTAAAAA 58.996 39.130 0.00 0.00 32.05 1.94
791 819 1.946768 TCACCAAGAAGCCGACAAAAG 59.053 47.619 0.00 0.00 0.00 2.27
794 822 1.001378 CCAAGAAGCCGACAAAAGTGG 60.001 52.381 0.00 0.00 0.00 4.00
860 888 4.074259 CACAAACCATCTTGAGTGGATGA 58.926 43.478 5.41 0.00 42.02 2.92
945 978 1.375652 CAGCCAGTCAGCAGGAGTG 60.376 63.158 6.32 6.32 44.99 3.51
966 999 2.595878 CGCTCGCTGCCATCATCAG 61.596 63.158 0.00 0.00 38.78 2.90
967 1000 1.523258 GCTCGCTGCCATCATCAGT 60.523 57.895 0.00 0.00 34.21 3.41
1023 1056 1.598130 GTCCACCGCACAGCTTCTT 60.598 57.895 0.00 0.00 0.00 2.52
1116 1149 4.329545 GTCAGGTTCCTGCCGGCA 62.330 66.667 30.59 30.59 34.33 5.69
1822 1864 1.137872 CCTTCCTCTTCATCAGGGACG 59.862 57.143 0.00 0.00 0.00 4.79
1823 1865 0.537188 TTCCTCTTCATCAGGGACGC 59.463 55.000 0.00 0.00 0.00 5.19
1824 1866 1.144936 CCTCTTCATCAGGGACGCC 59.855 63.158 0.00 0.00 0.00 5.68
1827 1869 0.250234 TCTTCATCAGGGACGCCAAG 59.750 55.000 0.00 0.00 0.00 3.61
1902 1944 2.203877 TACCAGGGCGTCAGGGTT 60.204 61.111 7.17 0.00 34.88 4.11
1912 1954 3.070590 GGGCGTCAGGGTTACATACTAAT 59.929 47.826 0.00 0.00 0.00 1.73
1950 2093 4.331717 ACCAGCAATGCTTTATGTACGTAC 59.668 41.667 18.90 18.90 36.40 3.67
1951 2094 4.505300 CAGCAATGCTTTATGTACGTACG 58.495 43.478 20.18 15.01 36.40 3.67
1954 2097 5.457799 AGCAATGCTTTATGTACGTACGTAG 59.542 40.000 27.48 17.57 33.89 3.51
2020 2163 4.954875 AGTGCAGATAGAATTACTCCTGC 58.045 43.478 12.63 12.63 46.11 4.85
2121 2272 2.696566 TTGGGCGCCAATACATACG 58.303 52.632 30.85 0.00 38.75 3.06
2250 2410 9.205513 AGGGCATTCTTTATTATCTCAAATGTT 57.794 29.630 0.00 0.00 0.00 2.71
2299 2463 1.149174 CACCCGGCCTCTGCATAAT 59.851 57.895 0.00 0.00 40.13 1.28
2373 2537 3.310246 ACCAACAAAACGACAACAACAC 58.690 40.909 0.00 0.00 0.00 3.32
2427 2591 2.819608 CGAAAGTGGTGGTGGATCAATT 59.180 45.455 0.00 0.00 0.00 2.32
2430 2594 1.628340 AGTGGTGGTGGATCAATTCGA 59.372 47.619 0.00 0.00 0.00 3.71
2441 2605 5.758296 GTGGATCAATTCGAAGGTTATGCTA 59.242 40.000 3.35 0.00 0.00 3.49
2445 2609 5.680619 TCAATTCGAAGGTTATGCTACCAT 58.319 37.500 3.35 0.00 40.82 3.55
2625 2810 3.157881 GTGAGCCCTCTAAAAAGCCTTT 58.842 45.455 0.00 0.00 0.00 3.11
2666 2851 1.133598 CATACCGCACGGAGTTACTCA 59.866 52.381 17.40 0.00 41.61 3.41
2683 2868 3.107601 ACTCAGCTTACAGCCAATCCTA 58.892 45.455 0.00 0.00 43.77 2.94
2717 2902 2.173669 CACGTGGCGATCATGGGAC 61.174 63.158 7.95 0.00 38.02 4.46
2779 2964 3.700961 CGATAAACGGCACTCGGG 58.299 61.111 0.00 0.00 44.45 5.14
2786 2971 0.390735 AACGGCACTCGGGTTACATC 60.391 55.000 0.00 0.00 44.45 3.06
2792 2977 1.340248 CACTCGGGTTACATCGCCTAT 59.660 52.381 0.00 0.00 0.00 2.57
2812 2997 7.435192 CGCCTATTTTTCCATAACCAGATTTTC 59.565 37.037 0.00 0.00 0.00 2.29
2869 3054 0.834687 AGCCGGTGTAGGAAGGTTCA 60.835 55.000 1.90 0.00 0.00 3.18
2876 3061 3.009143 GGTGTAGGAAGGTTCAGGACATT 59.991 47.826 0.00 0.00 34.44 2.71
2906 3091 2.356667 CCCCCTCCCACTTTGAGC 59.643 66.667 0.00 0.00 0.00 4.26
2907 3092 2.356667 CCCCTCCCACTTTGAGCC 59.643 66.667 0.00 0.00 0.00 4.70
2908 3093 2.045926 CCCTCCCACTTTGAGCCG 60.046 66.667 0.00 0.00 0.00 5.52
2909 3094 2.045926 CCTCCCACTTTGAGCCGG 60.046 66.667 0.00 0.00 0.00 6.13
2910 3095 2.747855 CTCCCACTTTGAGCCGGC 60.748 66.667 21.89 21.89 0.00 6.13
2911 3096 4.697756 TCCCACTTTGAGCCGGCG 62.698 66.667 23.20 9.03 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.159353 TGATGACGAAGGTAATGGACG 57.841 47.619 0.00 0.00 0.00 4.79
9 10 3.621715 GGTTGATGACGAAGGTAATGGAC 59.378 47.826 0.00 0.00 0.00 4.02
10 11 3.517901 AGGTTGATGACGAAGGTAATGGA 59.482 43.478 0.00 0.00 0.00 3.41
11 12 3.873910 AGGTTGATGACGAAGGTAATGG 58.126 45.455 0.00 0.00 0.00 3.16
13 14 5.365605 TGGATAGGTTGATGACGAAGGTAAT 59.634 40.000 0.00 0.00 0.00 1.89
14 15 4.712829 TGGATAGGTTGATGACGAAGGTAA 59.287 41.667 0.00 0.00 0.00 2.85
16 17 3.104512 TGGATAGGTTGATGACGAAGGT 58.895 45.455 0.00 0.00 0.00 3.50
17 18 3.133003 AGTGGATAGGTTGATGACGAAGG 59.867 47.826 0.00 0.00 0.00 3.46
22 24 4.442192 GGAGTCAGTGGATAGGTTGATGAC 60.442 50.000 0.00 0.00 36.65 3.06
31 33 2.102252 GCTTCTGGGAGTCAGTGGATAG 59.898 54.545 0.00 0.00 43.76 2.08
33 35 0.908198 GCTTCTGGGAGTCAGTGGAT 59.092 55.000 0.00 0.00 43.76 3.41
56 58 1.025647 GGCAGCCTTCTTCTCAGCAG 61.026 60.000 3.29 0.00 0.00 4.24
59 61 0.459934 CTCGGCAGCCTTCTTCTCAG 60.460 60.000 10.54 0.00 0.00 3.35
60 62 1.593787 CTCGGCAGCCTTCTTCTCA 59.406 57.895 10.54 0.00 0.00 3.27
101 103 2.819595 GCCAGATCGAAGCCGCAA 60.820 61.111 0.00 0.00 35.37 4.85
113 115 2.868964 ATACCCTCTAGTTGGCCAGA 57.131 50.000 5.11 0.00 0.00 3.86
114 116 5.580998 TCTATATACCCTCTAGTTGGCCAG 58.419 45.833 5.11 0.00 0.00 4.85
136 138 1.489230 ACAGGACCGGGGTAAATGATC 59.511 52.381 6.32 0.00 0.00 2.92
144 146 1.990327 AGAAATAAACAGGACCGGGGT 59.010 47.619 6.32 0.00 0.00 4.95
145 147 2.290705 ACAGAAATAAACAGGACCGGGG 60.291 50.000 6.32 0.00 0.00 5.73
150 152 4.546570 GCCAACACAGAAATAAACAGGAC 58.453 43.478 0.00 0.00 0.00 3.85
168 170 2.093394 TGCAAATAGCTAGTACGGCCAA 60.093 45.455 2.24 0.00 45.94 4.52
169 171 1.483004 TGCAAATAGCTAGTACGGCCA 59.517 47.619 2.24 0.00 45.94 5.36
174 176 9.482627 AGAAACATCTATGCAAATAGCTAGTAC 57.517 33.333 0.00 0.00 45.94 2.73
250 252 6.866010 TCATGAATATGGCATTGACAGTAC 57.134 37.500 4.78 0.00 34.97 2.73
508 532 1.649664 CAGAATCTGCTTCCTGTCCG 58.350 55.000 0.00 0.00 34.11 4.79
623 651 9.634163 GGATAGGACGAACATAAAACAATTTTT 57.366 29.630 0.00 0.00 38.51 1.94
624 652 8.798402 TGGATAGGACGAACATAAAACAATTTT 58.202 29.630 0.00 0.00 36.67 1.82
647 675 8.615211 CGATATTTTGATTGACTGAGATTTGGA 58.385 33.333 0.00 0.00 0.00 3.53
775 803 1.946768 TCCACTTTTGTCGGCTTCTTG 59.053 47.619 0.00 0.00 0.00 3.02
791 819 6.601741 TTTTTCAATGATTTGCACTTCCAC 57.398 33.333 0.00 0.00 32.61 4.02
794 822 8.301730 TCAGATTTTTCAATGATTTGCACTTC 57.698 30.769 0.00 0.00 32.61 3.01
860 888 3.321968 GGAGTTGGCTTCCAATCAAAACT 59.678 43.478 1.25 0.00 45.80 2.66
966 999 3.966154 TGTGCTTAATCGAGCTAGCTAC 58.034 45.455 19.38 9.39 43.11 3.58
967 1000 3.883489 TCTGTGCTTAATCGAGCTAGCTA 59.117 43.478 19.38 2.78 43.11 3.32
1014 1047 1.073897 GAGGTGGCCAAGAAGCTGT 59.926 57.895 7.24 0.00 0.00 4.40
1087 1120 2.033757 CCTGACCTTGCTGCTGCT 59.966 61.111 17.00 0.00 40.48 4.24
1167 1200 2.660064 GGCCTTCTCCTTCTCCGCA 61.660 63.158 0.00 0.00 0.00 5.69
1195 1228 4.821589 CTCCTTGCCGCCGGACTC 62.822 72.222 7.68 0.00 0.00 3.36
1201 1234 4.821589 CTCGTCCTCCTTGCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
1284 1326 3.041940 GCGAACTCCACCACCACG 61.042 66.667 0.00 0.00 0.00 4.94
1530 1572 0.100146 GGTTGTCGCCGTAGTAGAGG 59.900 60.000 0.00 0.00 0.00 3.69
1665 1707 0.907704 TGGGGTAGACCTTGACGCAT 60.908 55.000 0.00 0.00 40.03 4.73
1902 1944 7.337436 GTGGCTTGGTGGTTTAATTAGTATGTA 59.663 37.037 0.00 0.00 0.00 2.29
1912 1954 1.698506 CTGGTGGCTTGGTGGTTTAA 58.301 50.000 0.00 0.00 0.00 1.52
1950 2093 5.391721 CACAAGTATCGATCGTTGTACTACG 59.608 44.000 21.41 21.41 42.68 3.51
1951 2094 6.481134 TCACAAGTATCGATCGTTGTACTAC 58.519 40.000 19.53 10.40 31.92 2.73
1954 2097 6.807708 ATTCACAAGTATCGATCGTTGTAC 57.192 37.500 19.53 16.52 31.92 2.90
1957 2100 5.415366 CGAATTCACAAGTATCGATCGTTG 58.585 41.667 15.94 14.19 35.65 4.10
1959 2102 4.042398 CCGAATTCACAAGTATCGATCGT 58.958 43.478 15.94 5.23 35.65 3.73
1960 2103 3.121328 GCCGAATTCACAAGTATCGATCG 60.121 47.826 9.36 9.36 35.65 3.69
1961 2104 3.184581 GGCCGAATTCACAAGTATCGATC 59.815 47.826 0.00 0.00 35.65 3.69
1963 2106 2.093921 TGGCCGAATTCACAAGTATCGA 60.094 45.455 6.22 0.00 35.65 3.59
1992 2135 7.727181 GGAGTAATTCTATCTGCACTCCTTAA 58.273 38.462 11.06 0.00 45.58 1.85
1993 2136 7.291411 GGAGTAATTCTATCTGCACTCCTTA 57.709 40.000 11.06 0.00 45.58 2.69
1994 2137 6.168270 GGAGTAATTCTATCTGCACTCCTT 57.832 41.667 11.06 0.00 45.58 3.36
1995 2138 5.799827 GGAGTAATTCTATCTGCACTCCT 57.200 43.478 11.06 0.00 45.58 3.69
2119 2270 8.975439 CGAAAATTCTATTACTGCTATAACCGT 58.025 33.333 0.00 0.00 0.00 4.83
2120 2271 9.188588 TCGAAAATTCTATTACTGCTATAACCG 57.811 33.333 0.00 0.00 0.00 4.44
2250 2410 2.083002 TGCTTTGTATCGCTTGATGCA 58.917 42.857 0.00 0.00 42.05 3.96
2299 2463 3.433598 GGGACTGGCTGTATGCATCTTAA 60.434 47.826 0.19 0.00 45.15 1.85
2317 2481 2.031465 TGCCGGACTTTTCGGGAC 59.969 61.111 5.05 0.00 46.86 4.46
2373 2537 7.940137 ACATAGTGTTGGTCTATAGGACTCTAG 59.060 40.741 0.00 0.00 43.97 2.43
2399 2563 1.001048 CACCACCACTTTCGACGTAGA 60.001 52.381 0.00 0.00 0.00 2.59
2427 2591 3.035363 TGGATGGTAGCATAACCTTCGA 58.965 45.455 7.54 6.23 42.07 3.71
2430 2594 4.796110 ACATGGATGGTAGCATAACCTT 57.204 40.909 7.54 1.53 40.44 3.50
2592 2777 3.886505 AGAGGGCTCACTCGATTTACTAG 59.113 47.826 0.00 0.00 42.31 2.57
2593 2778 3.899726 AGAGGGCTCACTCGATTTACTA 58.100 45.455 0.00 0.00 42.31 1.82
2600 2785 2.353803 GCTTTTTAGAGGGCTCACTCGA 60.354 50.000 0.00 0.00 42.31 4.04
2625 2810 3.639561 TGCCGAGTCTTATATGTAAGCCA 59.360 43.478 4.43 0.00 37.75 4.75
2683 2868 1.733526 GTGCCGACAAACTTTGCCT 59.266 52.632 1.14 0.00 0.00 4.75
2732 2917 1.344942 CTTACAGCAGGCGTCGTGAC 61.345 60.000 0.00 0.00 0.00 3.67
2736 2921 3.188786 GGCTTACAGCAGGCGTCG 61.189 66.667 0.00 0.00 44.75 5.12
2778 2963 5.767816 ATGGAAAAATAGGCGATGTAACC 57.232 39.130 0.00 0.00 0.00 2.85
2779 2964 7.136772 GGTTATGGAAAAATAGGCGATGTAAC 58.863 38.462 0.00 0.00 0.00 2.50
2786 2971 6.391227 AATCTGGTTATGGAAAAATAGGCG 57.609 37.500 0.00 0.00 0.00 5.52
2792 2977 7.045126 ACACGAAAATCTGGTTATGGAAAAA 57.955 32.000 0.00 0.00 0.00 1.94
2837 3022 2.106683 CCGGCTCGAAATGGACCAC 61.107 63.158 0.00 0.00 0.00 4.16
2852 3037 0.249398 CCTGAACCTTCCTACACCGG 59.751 60.000 0.00 0.00 0.00 5.28
2869 3054 1.296715 GACGAGCACCCAATGTCCT 59.703 57.895 0.00 0.00 0.00 3.85
2893 3078 2.747855 GCCGGCTCAAAGTGGGAG 60.748 66.667 22.15 0.00 35.47 4.30
2894 3079 4.697756 CGCCGGCTCAAAGTGGGA 62.698 66.667 26.68 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.