>input_sequence_65640
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------------------------------------------------------------------------ATGGCGTC
CACCGCACAGCTTCTTGGCCACCTCGCCAGCTCCACGGCCACAGCCAGCCTTAGCTTCACGCCTGTCAGCGGCGGCGGCA
GCAGCAGCAAGGTCAGGTTCCTGCCGGCAACGGCGCAGAGGCGCCGCATGGTGGCGCGGCCGCGGGCGGCGGTGTCCGGT
GCGGAGAAGGAGAAGGCCAAGCCGGCCGAGTCCGGCG---------GCAAGGAGGACGAGCGCGTGGTGCAGGTGCACAG
CGCCGAGGAGTTCGACAGCGCGCTCCAGAAGGCCAAGAACCGGCTCGTGGTGGTGGAGTTCGCGGCGAGCCACAGCGTGA
ACAGCAAGCGCATCTACCCGTGCATGGTGGACCTCAGCCGCACCTGCGGCGACGTCGACTTCCTCCTCGTCATGGGCGAC
GAGTCGGAGGCCACGCGGGAGCTCTGCCAGCGGGAGGGCATCACCCAGGTGCCGCACTTCTCCTTCTACAAGGGCACCGA
GAAGGTGCACGAGGAGGAGGGCATCGGCCCCGACCAGCTCGCCGGCGACGTCCTCTACTACGGCGACAACCACGCCGGCG
TCGTGCAGCTGCACAGCCGGACGGACGTGGAGGCGCTCATGGCGGAGCACAGCGGCGAGGGCGGCAAGCTGCTGGTGCTG
GACGTCGGGCTCAAGCACTGCGGGCCATGCGTCAAGGTCTACCCCACCGTCGTCAAGCTCTCCCGCTCCATGGCCGACAC
CGCCGTCTTCGCGCGCATGAACGGCGACGAGAACGACGCATGCATGCAGTTCCTCAAGGACATGGAGGTCGTCGAGGTGC
CCACCTTCCTCTTCATCAGGGACGCCAAGATCGTCGGCCGCTACGTCGGCTCCGGCAAGGGCGAGCTCATCGGCGAGATC
CTCCGCTACCAGGGCGTCAGGGTTACATACTAA-----------------------------------------------
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>chr6D_1_TraesCS6D01G356100
CGTCGTCTCGTCCATTAC-CTTCGTCATCAACCTATCCACTGACTCCCAGAAGCTCGCTGCTGAGAAGAAGGCTGCCGAG
GACACCGCCGCCGCTGCCGCCGTTGCGGCTTCGATCTGGCCAACTAGAGGGTATATAGATCATTTACCCCGGTCCTGTTT
ATTTCTGTGTTGGCCGTACTAGCTATTTGCATAGATGTTTCTGCTATATGCCTAGTACGTGATTACGTGATTAAATATTA
GTACGGAATTAGTACTGTCAATGCCATATTCATGATTTATTTCTAGATTAGATTAATCAAAAAATTGCTAATATGCTCAA
CAATATCTATTATGTTGCATCTTCTGTAGTGAAAATGTTGTGATATTCAATTTGTAAAGTCTGCGACATATGACAGTGCA
TGTATGATATTTTAGATATGAATCA-------AAAGGTCTATATTTGAAATAGT--------ACTGCATATGGCCTTACA
AAGATAAATCAGCGTCAGATGGGTTACTGTA-------AAGTGTGAACTGGCGGACAGGAAGCAGATTCTGCCGCTGATA
TTTCGCAGGCGCTTGTGACGCTTTCAGAGATCCCTAGTTGAGTTTTGACAGGTGTTTGGTAGAGTTCGGCATCTCG----
GTGATTTAAAAAAAATTGTTTTATGTTCGTCCTATCCAAATCTCAGTCAATCAAAATATCGAAACCTGCCAGTAAACCCC
AGATCACCCGAGAGTTCAAAGCAAATTAGTTGTGGCCATGACTAGGTGGGGCAAAAAATCAGATTGAGGTGTGTGGTCTC
ACCAAGAAGCCGACAAAAGTGGAAGTGCAAATCATTGAAAAATCTGAGCTGAATGAAACACCAGCCACAAACCATCTTGA
GTGGATGAGTTTTGATTGGAAGCCAACTCCCCTCTCATCCTATTCTTCAAGCCCTCTCCCCCCTTCTCTAGA-----AGC
AGCCAGTCAGCAGGAGTGCTCGCTCGCTGCCATCATCAGTAGCTAGCTCGATTAAGCACAGATAGTGCATCAATGGCGTC
CACCGCACAGCTTCTTGGCCACCTCGCCAGCTCCACGGCCACAGCCAGCCTTAGCTTCACGCCTGTCAGCGGCGGCGGCA
GCAGCAGCAAGGTCAGGTTCCTGCCGGCAACGGCGCAGAGGCGCCGCATGGTGGCGCGGCCGCGGGCGGCGGTGTCCGGT
GCGGAGAAGGAGAAGGCCAAGCCGGCCGAGTCCGGCG---------GCAAGGAGGACGAGCGCGTGGTGCAGGTGCACAG
CGCCGAGGAGTTCGACAGCGCGCTCCAGAAGGCCAAGAACCGGCTCGTGGTGGTGGAGTTCGCGGCGAGCCACAGCGTGA
ACAGCAAGCGCATCTACCCGTGCATGGTGGACCTCAGCCGCACCTGCGGCGACGTCGACTTCCTCCTCGTCATGGGCGAC
GAGTCGGAGGCCACGCGGGAGCTCTGCCAGCGGGAGGGCATCACCCAGGTGCCGCACTTCTCCTTCTACAAGGGCACCGA
GAAGGTGCACGAGGAGGAGGGCATCGGCCCCGACCAGCTCGCCGGCGACGTCCTCTACTACGGCGACAACCACGCCGGCG
TCGTGCAGCTGCACAGCCGGACGGACGTGGAGGCGCTCATGGCGGAGCACAGCGGCGAGGGCGGCAAGCTGCTGGTGCTG
GACGTCGGGCTCAAGCACTGCGGGCCATGCGTCAAGGTCTACCCCACCGTCGTCAAGCTCTCCCGCTCCATGGCCGACAC
CGCCGTCTTCGCGCGCATGAACGGCGACGAGAACGACGCATGCATGCAGTTCCTCAAGGACATGGAGGTCGTCGAGGTGC
CCACCTTCCTCTTCATCAGGGACGCCAAGATCGTCGGCCGCTACGTCGGCTCCGGCAAGGGCGAGCTCATCGGCGAGATC
CTCCGCTACCAGGGCGTCAGGGTTACATACTAATTA----AACCACCAAGCCACCAGCA---------------------
----------------------------------------------------------------------------ATGC
TTTATGTACGTACGTAGTACAACGATCGATACTTGTGAATTCGGCCAAACGAAATTAAGGAGTGCAGATAGAATTACTCC
TGCAGTTTACTGCATGCATGCGGCATCGATCGATGCTATATATAGGTTCATATTTAGACAT--TTT---TATGCTCTTA-
--ATTATCTGGTATTGGGCGCCAATACATACGG-TTATAGCAGTAATAGAATTTTCGAGTGCAAATTGTAATAAGT---T
TATAATGGTTTTATTGTGAT-ATTATCAGAGCTTTGCCATCCT--ACTTTTTTTTGATAGAAGGGCATTCT--TTATTAT
CTCAAATGTTGCATC----AAGCGATACAAAGCATTATGAATAACACCCGGCCTCTGCATAATTAAGATGCATACAGCCA
GTCCCGAAAAGTCCGGCAAAAAGAAATGAAACTAAACCAACAAAACGACAACAACACTAGAGTCCTATAGACCAACACTA
TGTCTACGTCGAAAGTGGTGGTGGATCAATTCGAAGGTTATGCTACCATCCATGTTGGAAAAAAAC-CTCTGTAGCAGCC
TGCTCCAACCGCCACTCACGCTGCCGAGTATTAACATGTAAGCCGAGTGTCAAAACACGGGTATTCGTC-----------
---------AAGGCAAGGAAAAACTCGTGGCAAAAAAGAGTGACTCGGCTTATGGCCTAGTAAATCGAGTGAGCCCTCTA
AAAAGCCTTTGGCTTACATATAAGACTCGGCATACCGCACGGAGTTACTCAGCTTACAGCCAATCCTAGGCAAAGTTTGT
CGGCACGTGGCGATCATGGGACTTGCAGACGGCAGCGTCACGACGCCTGCTGTAAGCCGAGCGCCCCGATAAACGGCACT
CGGGTTACATCGCCTATTTTTCCATAACCAGATTTTCGTGTAAAAAAATGTTTTTAAAAATGTGGTCCATTTCGAGCCGG
TGTAGGAAGGTTCAGGACATTGGGTGCTCGTCCCCCCCTCCCACTTTGAGCCGGCG
>chr6A_1
CGTCGTCTACGTCCATCGTCTTCATCATCAACTTGTCCACTGACTCGGAGAAGCTCGTTGTCGAGAAGAAGGTTGCCGAG
GACAGCGCCGCCGCTGCCGCCGATTCGGCTTCGACTTGGCCAACCAGTGGGTATATAAATCATTTGGCCCGCTCCTGTTT
ATTTCTGTGCCGGCCATACTAGCTATTTGCATAGATGTTTCTGCTATATGCCTAGTAAGTGCTTACGTGATTAAATATTA
GTACGGAATTAATACTGTCAACGCCATATTCATGGTTTATTTCTAGATTGGATTAATTGAAAAATTGCTAATATGCTCAA
CAATATCTATTATGTTGCATCTTCTGCAGTGAAAATGTTGTGATATTCAATTTGTAAAGTCTGCGACATATGACAGTGTG
TGTATGATATTCTGGATATGAATGG-------AATGGTCTATATTTGAAATGGTACTGCATTACTGCATATGGCCTTACA
ATGGTAAATCAGCGTCAGATGGTCACTGC-A-------AAGTGTGAACTGGTGGACAGGAAGCAGATTCTGCCGCTGATA
TTTCGCAGGCGCTTGTGACGCTTTCAGAGATCCCTAGTTGAGTTTTGACAGGTGTTTGGTGGAGTTCGGCATCTCGATCG
GTGATATTTTCGAAATTGTTTTATGTTCGTCCTACCCAAATCTCAGTCAATCAAAATATCGAAACCTGCCAGTATACCCC
AGATCACCCGAGAGTTCAAAGCAAATTAGTTGTGGCCATGGCTAAGTGGGGCAAAAAATCAGATTGAGGTGTGTGGTCTC
GCGAAGAAACCGACAAAATTGCAAGTGCAAATCATTGAAAAATCTGAGCTGAATGAAACACCAGCCACAAACCATCTTGA
GTGGATGGGTTTTGATTGGAAGC----------CTCATCCTATTCTTCAAGCCTTCTCCCCCCTTCTCTAGCATAGCAGC
AGCCAGTCAGCAGGAGTACTCCCTCGCTGCCATCATCACGAGCTAACTCGATTAAGCACAGATAGTGCATCAATGGCGTC
CACCGCCCAGCTTCTCGGCCACCTCGCCGGCTCCACCACCACAGCCAGCCTTAGCGTCACGCCTGTG------GGCGGCG
GCAGCAGCAAGGTCAGGTTCCTGCCGGCGAAGGCGCAGAGGCGGCGCGTGGTGGCGCGGCCGCGGGCGGCGGTGTCCGGC
GCGGAGAAGGAGAAGGCCAAGCCGGC---------CG---------GCAAGGAGGACGAGCGCGTGGTGCAGGTGCACAG
CGCGGAGGAGTTCGACAGCGCGCTCCAGAAGGCCAAGAACCGGCTGGTGGTGGTGGAGTTCGCGGCGAGCCACAGCGTGA
ACAGCAAGCGCATCTACCCGTGCATGGTGGACCTCAGCCGCACCTGCGGCGACGTCGACTTCCTCCTGGTCATGGGCGAC
GAGTCGGAGGCCACGCGGGAGCTCTGCAAGCGGGAGGGCATCACCCAGGTGCCGCACTTCTCCTTCTACAAGGGCACCGA
GAAGGTGCACGAGGAGGAGGGCATCGGCCCCGACCAGCTCGCCGGCGACGTGCTCTACTACGGCGACAACCACGCCGGCG
TCGTGCAGCTGCACAGCCGGACGGACGTGGAGGCGCTCATGGCAGAGAACAGCGGCGAGGACGGGAAGCTGTTGGTGCTG
GACGTCGGGCTCAAGCACTGCGGGCCCTGCGTCAAGGTCTACCCCACCGTCGTCAAGCTCTCCCGCTCCATGGCCGACAC
CGCCGTCTTCGCGCGCATGAACGGCGACGAGAACGACGCATGCATGCAGTTCCTCAAGGACATGGAGGTCGTCGAGGTGC
CTACCTTCCTCTTCATCAGGGACAAGAAAATCGTCGGCCGCTACGTCGGCTCCGGCAAGGGGGAGCTCATCGGCGAGATC
CTCCGGTACCAGGGCGTCAGGGTCACATACTAA--------ACCAGCAAGCCACCAGCA---------------------
----------------------------------------------------------------------------ATGC
TTTATGTACGTAGTACAACAA-----CGATACTTGTGAATTCGGCCAAACGAAA----GGAGTGCAGATAGAATTACTCC
TG---TTTACTGCATGCATGCGGCATCAATCGATGCTATACATAGGTTCATATTTAGACAT--TTT---TATGCTCTTA-
--ATTATCTGGTATTGGGCGCCAATCACATACG-TTATAGCAGTAATAGAATTTTGGAGTGCAAATTGTAATAAGT---T
TATAATGGTTTTATTGTGAT-ATTATCATAGCTTTGCCATCCT--ACTTTTTTTT-ATAGAAGGGCGTATT--TTATTAT
CTCAAATGTAGCATC----AAGCGATACAAAGCATTATGAATAACACCCGACCTCTGCATAACTAAGATGCATACAGCCA
ATCCCGAAAAGTCCGGCAAAAAGAAATGAAACTAAACCAACAAAACGACAACATCGGTAGAGTCCTATAGACCAACACTA
TGCCTACGTCGAAAGTGATGGTGGATCAATCCGGAGGTTATGCTGCCACTCATGTTGGGAAAAAAC-CTCTGTAGCAGCC
TGCTCCAACCGCCACTCACGCTGTCGAGTATTAACATGTAAGCCGGGTGTCAAAACACGGGTATTCGTC-----------
---------AAGGCAAGGAAAAACTCGTGGCAAAAAAGAGTGACTCGGCTTATGGCTGAGTAAACCGGGTGAGCCCTCTA
AAAAGCCTTCGGCTTACATATAAGACTCGGCATACTGTACGGAGTTACTGGGCTTACAGCCAATCCTCGACAAAGTTTGT
CGGCACATGGCGATCATGGGAGTTGCAGACGGC-----------------------------------------------
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>chr6B_209
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-------------------------------------------------GCCTAGTAAGTGCTTACGTGATTAAATATCA
GTACGGAATTAATACTGTCAATGCCATATTCATGATTTATTTCTAGATTAAATTAATTGAAAAATTGCTAATATGCTCAA
CAATATCTGTTATGTTGCATCTTCTGTGGTGAAAATGTTGTGACATTCAATTTGCAAAGTCCGCGACATATGACAGTGCG
TGTATGATATTTTAGATATGAATCTAAACTCTAAAGGTCTATATTTGAAATAGT--------ACTGCATATGGCCTTACA
AAGATAAATCAGCGTCAGATGGGTTACTGTGAAGTGTCAAGTGTGAACTGGTGGACAGGAAGCAGATTCTGCCGCTGATA
TTTCGCAGGCGCTTGTGACGCTTTCAGAGATCCCTAGTTGAGTTTTGACAGGTGTTTGGTAGAGTTCGGGATCTCG----
GTGATATTTTTGAAATTGTTTTATGTTCGTCCTACCCAAATCTCAGTCAATCAAAATATCGAAACCTGCCAGTAAACCCC
AGATCACCCGAGAGTTCAAAGCAAATTAGTTGTGGCCATGACTAGGTGGGGCAAAAAATCAGATTGAGGTGTGTGGTCTC
ACGAAGAAGCCGACAAAAATGCAAGTGCAAATCATTGAAAAATCTGAGCTGAATGAAACACCAGCCACAAACCATCTTGA
GTGGATGGCTTTTGATTGGAGGCCAACTCCCCTCTCATCCTATTCTTCAAGCGCTCTCCCCCCTTCTCTAGA-----AGC
AGCCAGTCAGCAGGAGTACTCGCTCGTTGCCATCATCACGAGCTAGCTCGATTAAGCACAGATAGTGCATCAATGGCCTC
CACCGCCCAGCTTCTCGGCCACCTCGCCGGCTCCACCGCCACAGCCAGCCTTAGCTTCACGCCTGTCAGC---GGCGGCG
GCAGCAGCAAGGTCAGGTTCCTGCCGGCGACGGCGCAGAGGCGCCGCGTGGTGGCGCGCCCGCGGGCCGCGGTGTCCGGC
GCGGAGAAGGAGAAGGCCAAGCCGGC---------CGAGTCCGGAAGCAAGGAGGACGAGCGCGTGGTGCAGGTGCACAG
CGCGGAGGAGTTCGACAGCGCGCTCCAGAAGGCCAAGAACAGGCTGGTGGTGGTGGAGTTCGCGGCGAGCCACAGCGTGA
ACAGCAAGCGCATCTACCCGTGCATGGTGGACCTCAGCCGCACCTGCGGCGACGTCGACTTCCTCCTCGTCATGGGCGAC
GAGTCGGAGGCCACGCGGGAGCTGTGCCAGCGGGAGGGCATCACCCAGGTGCCGCACTTCTCCTTCTACAAGGGCACCGA
GAAGGTGCACGAGGAGGAGGGCATCGGCCCCGACCAGCTCGCCGGCGACGTTCTCTACTACGGCGACAACCACGCCGGCG
TCGTGCAGCTGCACAACCGGGCGGACGTGGAGGCGCTCATGGCCGAGAACAGCGGCGAGGACGGCAAGCTGCTGGTGCTG
GACGTCGGGCTCAAGCACTGCGGGCCCTGCGTCAAGGTCTACCCCACCGTCGTCAAGCTCTCCCGCTCCATGGCCGACAC
CGCCGTCTTCGCGCGCATGAACGGCGACGAGAACGACGCATGCATGCAGTTCCTCAAGGACATGGAGGTCGTCGAGGTGC
CCACCTTCCTCTTCATCAGGGACAAGAAAATCGTGGGCCGCTACGTCGGCTCCGGCAAGGGCGAGCTCATCGGCGAGATC
CTCCGCTACCAGGGCGTCAGGGTCACATACTAACTAAGGGAACCACCAAGCCATCACCACTCACCAGCCGAATTAAGTTG
GATCATCCCTAGTTCCCTACCCTACACAGTCACAGGTAGCAGTAGCAGCACAAATGAATTGAGAGACAAGCAATTGATGC
TTCATGTAATTCTATACTATATATACTTGTTAC-----------------------------------------------
------------------TGCCGCATCAATCGATGC----TATAGGTTCATATTTAGACAT--TTTCATCATGCTCTTA-
--ATTACCTGGTATTGGGCGCCAATCACATACGGTTATAGCAGTAATAGAATTTTCGAGTGCAAATTGTAATAAGTTTAT
TATATTGTTTTTACTGTGAT-ATAATCGGAGCTTTGCCATCCT--ATTTTTTTTTGATAAAAGGGCGTTTTTATTATTAT
CTCAAATATAGCATC----AAGCGATACAAATCATTATGAATAACACCCGACCTCTGCATAACTAAGATGCATACAGCCA
ATTTCGAAAAGTCCAGCAAAAAGAAA------------------------------------------------------
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>chr6B_2068
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-------------------------------------------------ATATTTAGACAATATTTAAATATGCTCTTAA
CTATTACCTGGTATTGGGCGCCAATCACATACGGTTATAGCAGTAATAGAATTTTCGAGTGCAAATTGTAATAAGTTTAT
TATATTGTTTTTACTGTGATTATTATCTGAGCTCTGTTGTCCTACATTTCTTTTTGATAAAAGGGTGTTTT--TTATTAT
CTCAAATGTAGCATCAATTAAGCGATACAAAGCATTATGAATAACACCCGGCCTCTGCATAACTAAGATGCATACAGCCA
ATCCCAAAAAGTCTAGCAAAAAGAAATGAAACTAAACCAATAAATCGATGAGAATAGTACAGTCCTATAAACCAGCACTA
TGCCTACGTCAAAAGTGGTGGTGGGTCAATCCGGAGGTTATGTTGTCACCCATGTTAGAAAAAATATCTCTGTAACCACT
TTCCCCAACCGCCACTCACTCTGCCGAGTATTAACATGTAAGCCGAGTGTCAAAACACGGGTATTCGTCTTACATCCACA
TAAGCTGAGAAGGTAAGGAGAAACTTGTGGCAAAAAATACTGACTCGGCTTATGGCTGAGTAAACCAAGTGAGCTCTCTA
AAAAGCCTTCGGCTTACATATAAGACTCAATATATCGCAAGGAGTTACTCGGCTTACAGCCAATCCTCGGCAAATTTTGT
TGGCATGTGGCGATCATGGGAGTTGCAGACGGCGGCATCAA-ACGCCTGTTGTAAGCCGAGTGCCCCGATAAACGGCACT
CGACTTACATTGCCTA-TTTTCCATAACCAGATTTTTGTGTAAAAAA-TGGTTTTAATAATATGGTCCATTTCGAGGCGG
TGTAGGAAGGTTCGGGACATAGGGTGCTCGTCCCCCC-------------------
>SNPs
--------SSSS-SS-SS-----S--------S-S-----------SS---------S--SS----------S-------
----S-----------------S-S---------SS--------S--S---------S-------SS----S--------
---------SS----S-----------------------------------------S---S------------------
-----------S---------------------------------------------SS---------------------
-------------------------------------------------------------------------------S
------------------------S-------------------------------------------------------
---------------------------------------------------S----------------------------
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-----S-SSSSS----------------------S---------------------------------------------
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--S---------------S--S----------------------------------------------------------
-------S------------------------------------------------------------------------
-----------------S--------------------SS----------------------------------------
------S--------S------------S-------S---------------------------------SSS------S
----------------------------S------------------S-------------------------------S
--------------------------SSSSSSSSS---------------------------------------------
---S-----------------------------------------S----------------------------------
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---------------------------------------------------S----------------------------
-------------------------------------------S---S------------S-------------------
--------------------------S-----------------------------------------------------
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-----------------------SSS--S---------------------------------------------------
-----------------------S---------S----------------------------------------------
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------------SS--S--S-SSS-S----------------------------SSSS----------------------
--SSS----------------------S----------------------------------------------------
-------------------------SSSSSSS------------------------------------------------
------------------------------------------------------------------S--S----------
---------S----------------------------------------------------S-----------------
S-------------------------------------------------------S-----------------------
--S---------------------------S--S----------S---S-------------------------------
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--------------------------------------------------------SS------S---------------
---------S----------------------------------------S----------------S------------
---------------------S-----------S--S---SS-------S-----------S------------------
--SS------S-----S-------------------S----------S--S------S---S--------------S---
-------------S------S----------------SSSSSSSSSSSSSSSSSSS
>forward_646
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------------------------------------------------------------------AGTTCGGCATCTCG
GTGATT--------------------------------------------------------------------------
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>reverse_1572
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---------------------------------------------------CCTCTACTACGGCGACAACC---------
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>forward_822
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-CCAAGAAGCCGACAAAAGTGG----------------------------------------------------------
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>reverse_1707
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--------------------------ATGCGTCAAGGTCTACCCCA----------------------------------
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>forward_978
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-------------------------------------------------------------------------------C
AGCCAGTCAGCAGGAGTG--------------------------------------------------------------
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>reverse_3037
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----------------------------------------------------------------------------CCGG
TGTAGGAAGGTTCAGG----------------------------------------
