Multiple sequence alignment - TraesCS6D01G352800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G352800 chr6D 100.000 3534 0 0 1 3534 448808388 448811921 0.000000e+00 6527
1 TraesCS6D01G352800 chr6D 93.939 132 6 1 3405 3534 382741647 382741778 7.740000e-47 198
2 TraesCS6D01G352800 chr6D 95.536 112 4 1 3424 3534 466787149 466787038 1.010000e-40 178
3 TraesCS6D01G352800 chr6A 94.381 1139 42 9 1423 2555 594958358 594959480 0.000000e+00 1729
4 TraesCS6D01G352800 chr6A 94.542 568 20 8 1 561 594955188 594955751 0.000000e+00 867
5 TraesCS6D01G352800 chr6A 93.675 332 9 7 874 1195 594957901 594958230 1.470000e-133 486
6 TraesCS6D01G352800 chr6A 92.607 257 14 2 2662 2918 594959663 594959914 7.210000e-97 364
7 TraesCS6D01G352800 chr6A 95.495 111 5 0 3424 3534 486923750 486923640 1.010000e-40 178
8 TraesCS6D01G352800 chr6A 95.495 111 5 0 3424 3534 586172818 586172928 1.010000e-40 178
9 TraesCS6D01G352800 chr6A 92.126 127 7 1 1226 1349 594958221 594958347 3.630000e-40 176
10 TraesCS6D01G352800 chr6A 92.857 98 7 0 2565 2662 594959532 594959629 3.680000e-30 143
11 TraesCS6D01G352800 chr6B 90.826 1210 62 10 1728 2914 680725171 680726354 0.000000e+00 1574
12 TraesCS6D01G352800 chr6B 88.702 655 41 17 109 737 680723706 680724353 0.000000e+00 769
13 TraesCS6D01G352800 chr6B 86.294 394 39 4 2919 3311 46740124 46740503 7.060000e-112 414
14 TraesCS6D01G352800 chr6B 97.838 185 4 0 1011 1195 680724618 680724802 1.580000e-83 320
15 TraesCS6D01G352800 chr6B 87.313 268 23 4 1425 1692 680724910 680725166 2.670000e-76 296
16 TraesCS6D01G352800 chr6B 95.902 122 5 0 1226 1347 680724793 680724914 7.740000e-47 198
17 TraesCS6D01G352800 chr5A 92.326 430 20 8 2919 3346 608420806 608421224 1.820000e-167 599
18 TraesCS6D01G352800 chr5A 73.175 548 120 15 1965 2494 591673687 591674225 4.690000e-39 172
19 TraesCS6D01G352800 chr5A 100.000 84 0 0 3328 3411 608421239 608421322 4.720000e-34 156
20 TraesCS6D01G352800 chr5A 86.486 111 15 0 2196 2306 591977242 591977352 4.790000e-24 122
21 TraesCS6D01G352800 chrUn 85.496 393 44 2 2919 3311 95564578 95564957 7.110000e-107 398
22 TraesCS6D01G352800 chr2A 77.160 486 95 12 1957 2437 187203971 187204445 5.820000e-68 268
23 TraesCS6D01G352800 chr2A 91.870 123 10 0 3412 3534 50349667 50349789 4.690000e-39 172
24 TraesCS6D01G352800 chr2B 76.033 484 95 17 1965 2439 248690846 248691317 7.630000e-57 231
25 TraesCS6D01G352800 chr1A 95.122 123 6 0 3412 3534 483845083 483845205 1.000000e-45 195
26 TraesCS6D01G352800 chr1A 95.495 111 5 0 3424 3534 393685196 393685086 1.010000e-40 178
27 TraesCS6D01G352800 chr1A 93.333 90 6 0 1018 1107 34272386 34272297 2.210000e-27 134
28 TraesCS6D01G352800 chr5B 74.160 476 106 13 1965 2433 578815554 578816019 7.790000e-42 182
29 TraesCS6D01G352800 chr5B 72.485 487 106 21 1965 2437 652731030 652731502 7.960000e-27 132
30 TraesCS6D01G352800 chr5B 86.735 98 13 0 2209 2306 579384073 579384170 3.730000e-20 110
31 TraesCS6D01G352800 chr4A 94.167 120 6 1 3409 3528 71118923 71119041 7.790000e-42 182
32 TraesCS6D01G352800 chr1B 95.495 111 5 0 3424 3534 138214326 138214216 1.010000e-40 178
33 TraesCS6D01G352800 chr3B 90.076 131 2 5 3407 3526 639179056 639178926 3.650000e-35 159
34 TraesCS6D01G352800 chr3B 72.802 489 107 21 1965 2437 685227502 685227980 3.680000e-30 143
35 TraesCS6D01G352800 chr3B 86.260 131 7 4 3407 3526 235972773 235972643 7.960000e-27 132
36 TraesCS6D01G352800 chr3B 85.470 117 12 3 2925 3040 788916503 788916391 2.230000e-22 117
37 TraesCS6D01G352800 chr3B 85.470 117 12 3 2925 3040 788972524 788972412 2.230000e-22 117
38 TraesCS6D01G352800 chr5D 73.191 470 105 17 1977 2437 519056326 519055869 2.200000e-32 150
39 TraesCS6D01G352800 chr5D 86.486 111 15 0 2196 2306 472435873 472435983 4.790000e-24 122
40 TraesCS6D01G352800 chr3A 71.515 495 112 21 1965 2437 655727507 655727994 4.820000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G352800 chr6D 448808388 448811921 3533 False 6527.0 6527 100.000000 1 3534 1 chr6D.!!$F2 3533
1 TraesCS6D01G352800 chr6A 594955188 594959914 4726 False 627.5 1729 93.364667 1 2918 6 chr6A.!!$F2 2917
2 TraesCS6D01G352800 chr6B 680723706 680726354 2648 False 631.4 1574 92.116200 109 2914 5 chr6B.!!$F2 2805
3 TraesCS6D01G352800 chr5A 608420806 608421322 516 False 377.5 599 96.163000 2919 3411 2 chr5A.!!$F3 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 3008 0.106419 CCTCCTAGGGCTCGTCTCTT 60.106 60.0 9.46 0.0 0.00 2.85 F
1618 3799 0.032117 ACATCATGGAGGAGGACCGA 60.032 55.0 0.00 0.0 41.83 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 4103 1.002257 TGCGGATGAGCATGTTGGT 60.002 52.632 0.00 0.0 42.92 3.67 R
3473 5765 0.034616 TTTTTCATGGGCGGGCAAAG 59.965 50.000 3.27 0.0 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.859427 AAACAAATCTGTCCAATATGTGTAATG 57.141 29.630 0.00 0.00 33.45 1.90
38 39 7.929159 TGTCCAATATGTGTAATGTAGCAATG 58.071 34.615 0.00 0.00 0.00 2.82
39 40 7.555914 TGTCCAATATGTGTAATGTAGCAATGT 59.444 33.333 0.00 0.00 0.00 2.71
40 41 7.857389 GTCCAATATGTGTAATGTAGCAATGTG 59.143 37.037 0.00 0.00 0.00 3.21
41 42 6.638063 CCAATATGTGTAATGTAGCAATGTGC 59.362 38.462 0.00 0.00 45.46 4.57
58 62 7.396419 GCAATGTGCATTTTGAAGATGAATAC 58.604 34.615 13.85 0.00 44.26 1.89
84 88 7.439056 CCCTCATGGTTTGTATTGAAATAATGC 59.561 37.037 0.00 0.00 0.00 3.56
86 90 9.590451 CTCATGGTTTGTATTGAAATAATGCTT 57.410 29.630 0.00 0.00 0.00 3.91
136 140 7.200434 TGCTGATAAGTTCCTCCTAGATTTT 57.800 36.000 0.00 0.00 0.00 1.82
141 145 4.576330 AGTTCCTCCTAGATTTTGGTGG 57.424 45.455 0.00 0.00 38.09 4.61
339 358 3.899734 TCCGCAAATGTGAATTCAACAG 58.100 40.909 10.35 0.25 0.00 3.16
459 485 8.977505 GCAAAGTCAAGTCAATAAATGCTTTTA 58.022 29.630 7.20 7.20 0.00 1.52
498 524 4.320714 CCACATATGAAAATGGCATCGGAG 60.321 45.833 10.38 0.00 0.00 4.63
585 1008 3.192422 TGGAAGCCCGATAACACATTTTG 59.808 43.478 0.00 0.00 34.29 2.44
688 2698 0.319900 GATATGGACGTGGAGCGCAT 60.320 55.000 11.47 0.00 46.11 4.73
740 2750 0.259647 TCAGGGGCCATGATTCTTGG 59.740 55.000 18.36 13.02 37.31 3.61
741 2751 0.259647 CAGGGGCCATGATTCTTGGA 59.740 55.000 14.11 0.00 36.26 3.53
743 2753 1.577242 AGGGGCCATGATTCTTGGATT 59.423 47.619 19.85 2.00 36.26 3.01
744 2754 2.791179 AGGGGCCATGATTCTTGGATTA 59.209 45.455 19.85 0.00 36.26 1.75
745 2755 3.207321 AGGGGCCATGATTCTTGGATTAA 59.793 43.478 19.85 0.00 36.26 1.40
747 2757 4.594491 GGGGCCATGATTCTTGGATTAATT 59.406 41.667 19.85 0.00 36.26 1.40
748 2758 5.779771 GGGGCCATGATTCTTGGATTAATTA 59.220 40.000 19.85 0.00 36.26 1.40
749 2759 6.441604 GGGGCCATGATTCTTGGATTAATTAT 59.558 38.462 19.85 0.00 36.26 1.28
750 2760 7.364144 GGGGCCATGATTCTTGGATTAATTATC 60.364 40.741 19.85 1.83 36.26 1.75
752 2762 7.253422 GCCATGATTCTTGGATTAATTATCGG 58.747 38.462 19.85 0.00 36.26 4.18
753 2763 7.121168 GCCATGATTCTTGGATTAATTATCGGA 59.879 37.037 19.85 0.00 36.26 4.55
754 2764 8.454106 CCATGATTCTTGGATTAATTATCGGAC 58.546 37.037 12.18 0.00 36.26 4.79
755 2765 9.224267 CATGATTCTTGGATTAATTATCGGACT 57.776 33.333 0.00 0.00 33.82 3.85
756 2766 8.833231 TGATTCTTGGATTAATTATCGGACTC 57.167 34.615 0.00 0.00 33.82 3.36
757 2767 7.878127 TGATTCTTGGATTAATTATCGGACTCC 59.122 37.037 0.00 0.00 33.82 3.85
758 2768 6.740944 TCTTGGATTAATTATCGGACTCCA 57.259 37.500 0.00 0.00 33.82 3.86
759 2769 6.759272 TCTTGGATTAATTATCGGACTCCAG 58.241 40.000 0.00 0.00 33.21 3.86
760 2770 5.483685 TGGATTAATTATCGGACTCCAGG 57.516 43.478 0.00 0.00 33.82 4.45
761 2771 4.905456 TGGATTAATTATCGGACTCCAGGT 59.095 41.667 0.00 0.00 33.82 4.00
762 2772 5.221641 TGGATTAATTATCGGACTCCAGGTG 60.222 44.000 0.00 0.00 33.82 4.00
763 2773 2.622064 AATTATCGGACTCCAGGTGC 57.378 50.000 0.00 0.00 0.00 5.01
764 2774 1.496060 ATTATCGGACTCCAGGTGCA 58.504 50.000 0.00 0.00 35.96 4.57
765 2775 1.496060 TTATCGGACTCCAGGTGCAT 58.504 50.000 0.00 0.00 35.96 3.96
766 2776 0.752658 TATCGGACTCCAGGTGCATG 59.247 55.000 0.00 0.00 35.96 4.06
769 2779 0.752658 CGGACTCCAGGTGCATGATA 59.247 55.000 0.00 0.00 35.96 2.15
770 2780 1.269988 CGGACTCCAGGTGCATGATAG 60.270 57.143 0.00 0.00 35.96 2.08
771 2781 1.765314 GGACTCCAGGTGCATGATAGT 59.235 52.381 0.00 0.00 36.25 2.12
772 2782 2.484417 GGACTCCAGGTGCATGATAGTG 60.484 54.545 0.00 0.00 36.25 2.74
773 2783 2.432146 GACTCCAGGTGCATGATAGTGA 59.568 50.000 0.00 0.00 0.00 3.41
775 2785 3.070734 ACTCCAGGTGCATGATAGTGATC 59.929 47.826 0.00 0.00 0.00 2.92
776 2786 2.036346 TCCAGGTGCATGATAGTGATCG 59.964 50.000 0.00 0.00 34.49 3.69
777 2787 2.036346 CCAGGTGCATGATAGTGATCGA 59.964 50.000 0.00 0.00 34.49 3.59
779 2789 3.925299 CAGGTGCATGATAGTGATCGATC 59.075 47.826 18.72 18.72 34.49 3.69
780 2790 3.056250 AGGTGCATGATAGTGATCGATCC 60.056 47.826 22.31 13.44 34.49 3.36
781 2791 3.056250 GGTGCATGATAGTGATCGATCCT 60.056 47.826 22.31 19.26 34.49 3.24
782 2792 4.172505 GTGCATGATAGTGATCGATCCTC 58.827 47.826 22.31 14.88 34.49 3.71
783 2793 3.828451 TGCATGATAGTGATCGATCCTCA 59.172 43.478 22.31 18.04 34.49 3.86
785 2795 5.653769 TGCATGATAGTGATCGATCCTCATA 59.346 40.000 22.31 10.08 34.49 2.15
787 2797 7.503566 TGCATGATAGTGATCGATCCTCATATA 59.496 37.037 22.31 12.90 34.49 0.86
791 2801 9.072375 TGATAGTGATCGATCCTCATATATTCC 57.928 37.037 22.31 4.92 34.49 3.01
792 2802 6.723298 AGTGATCGATCCTCATATATTCCC 57.277 41.667 22.31 0.00 0.00 3.97
793 2803 6.197903 AGTGATCGATCCTCATATATTCCCA 58.802 40.000 22.31 0.00 0.00 4.37
794 2804 6.097554 AGTGATCGATCCTCATATATTCCCAC 59.902 42.308 22.31 9.14 0.00 4.61
795 2805 4.983671 TCGATCCTCATATATTCCCACG 57.016 45.455 0.00 0.00 0.00 4.94
796 2806 3.699538 TCGATCCTCATATATTCCCACGG 59.300 47.826 0.00 0.00 0.00 4.94
797 2807 3.699538 CGATCCTCATATATTCCCACGGA 59.300 47.826 0.00 0.00 0.00 4.69
798 2808 4.342378 CGATCCTCATATATTCCCACGGAT 59.658 45.833 0.00 0.00 33.03 4.18
799 2809 5.535030 CGATCCTCATATATTCCCACGGATA 59.465 44.000 0.00 0.00 30.66 2.59
800 2810 6.515200 CGATCCTCATATATTCCCACGGATAC 60.515 46.154 0.00 0.00 30.66 2.24
801 2811 5.585894 TCCTCATATATTCCCACGGATACA 58.414 41.667 0.00 0.00 0.00 2.29
802 2812 6.202331 TCCTCATATATTCCCACGGATACAT 58.798 40.000 0.00 0.00 0.00 2.29
803 2813 7.359056 TCCTCATATATTCCCACGGATACATA 58.641 38.462 0.00 0.00 0.00 2.29
804 2814 8.010697 TCCTCATATATTCCCACGGATACATAT 58.989 37.037 0.00 0.00 0.00 1.78
805 2815 8.090831 CCTCATATATTCCCACGGATACATATG 58.909 40.741 0.00 0.00 33.55 1.78
806 2816 8.547481 TCATATATTCCCACGGATACATATGT 57.453 34.615 13.93 13.93 33.74 2.29
807 2817 8.421002 TCATATATTCCCACGGATACATATGTG 58.579 37.037 18.81 4.00 33.74 3.21
813 2823 3.653344 CACGGATACATATGTGGAGTGG 58.347 50.000 18.81 5.44 0.00 4.00
814 2824 3.320826 CACGGATACATATGTGGAGTGGA 59.679 47.826 18.81 0.00 0.00 4.02
815 2825 3.574396 ACGGATACATATGTGGAGTGGAG 59.426 47.826 18.81 4.43 0.00 3.86
816 2826 3.574396 CGGATACATATGTGGAGTGGAGT 59.426 47.826 18.81 0.00 0.00 3.85
817 2827 4.321304 CGGATACATATGTGGAGTGGAGTC 60.321 50.000 18.81 2.94 0.00 3.36
818 2828 4.835615 GGATACATATGTGGAGTGGAGTCT 59.164 45.833 18.81 0.00 0.00 3.24
819 2829 5.047660 GGATACATATGTGGAGTGGAGTCTC 60.048 48.000 18.81 0.00 0.00 3.36
820 2830 3.987745 ACATATGTGGAGTGGAGTCTCT 58.012 45.455 7.78 0.00 35.11 3.10
821 2831 4.357325 ACATATGTGGAGTGGAGTCTCTT 58.643 43.478 7.78 0.00 35.11 2.85
822 2832 4.780021 ACATATGTGGAGTGGAGTCTCTTT 59.220 41.667 7.78 0.00 35.11 2.52
823 2833 5.958380 ACATATGTGGAGTGGAGTCTCTTTA 59.042 40.000 7.78 0.00 35.11 1.85
824 2834 6.613271 ACATATGTGGAGTGGAGTCTCTTTAT 59.387 38.462 7.78 0.00 35.11 1.40
825 2835 7.126421 ACATATGTGGAGTGGAGTCTCTTTATT 59.874 37.037 7.78 0.00 35.11 1.40
826 2836 5.825593 TGTGGAGTGGAGTCTCTTTATTT 57.174 39.130 0.00 0.00 35.11 1.40
827 2837 5.551233 TGTGGAGTGGAGTCTCTTTATTTG 58.449 41.667 0.00 0.00 35.11 2.32
828 2838 5.071788 TGTGGAGTGGAGTCTCTTTATTTGT 59.928 40.000 0.00 0.00 35.11 2.83
829 2839 6.269077 TGTGGAGTGGAGTCTCTTTATTTGTA 59.731 38.462 0.00 0.00 35.11 2.41
830 2840 7.038302 TGTGGAGTGGAGTCTCTTTATTTGTAT 60.038 37.037 0.00 0.00 35.11 2.29
831 2841 7.824779 GTGGAGTGGAGTCTCTTTATTTGTATT 59.175 37.037 0.00 0.00 35.11 1.89
832 2842 8.041323 TGGAGTGGAGTCTCTTTATTTGTATTC 58.959 37.037 0.00 0.00 35.11 1.75
833 2843 8.261522 GGAGTGGAGTCTCTTTATTTGTATTCT 58.738 37.037 0.00 0.00 35.11 2.40
834 2844 9.308318 GAGTGGAGTCTCTTTATTTGTATTCTC 57.692 37.037 0.00 0.00 0.00 2.87
835 2845 9.041354 AGTGGAGTCTCTTTATTTGTATTCTCT 57.959 33.333 0.00 0.00 0.00 3.10
836 2846 9.660180 GTGGAGTCTCTTTATTTGTATTCTCTT 57.340 33.333 0.00 0.00 0.00 2.85
837 2847 9.877178 TGGAGTCTCTTTATTTGTATTCTCTTC 57.123 33.333 0.00 0.00 0.00 2.87
865 2875 6.528537 TTTTACATGGGTCATGATTCTTGG 57.471 37.500 13.96 0.00 43.81 3.61
866 2876 3.744940 ACATGGGTCATGATTCTTGGT 57.255 42.857 13.96 0.00 43.81 3.67
867 2877 4.051661 ACATGGGTCATGATTCTTGGTT 57.948 40.909 13.96 0.00 43.81 3.67
868 2878 3.765511 ACATGGGTCATGATTCTTGGTTG 59.234 43.478 13.96 0.00 43.81 3.77
869 2879 3.805066 TGGGTCATGATTCTTGGTTGA 57.195 42.857 0.00 0.00 0.00 3.18
870 2880 4.111255 TGGGTCATGATTCTTGGTTGAA 57.889 40.909 0.00 0.00 0.00 2.69
871 2881 4.676109 TGGGTCATGATTCTTGGTTGAAT 58.324 39.130 0.00 0.00 39.14 2.57
872 2882 5.085920 TGGGTCATGATTCTTGGTTGAATT 58.914 37.500 0.00 0.00 36.86 2.17
873 2883 6.252233 TGGGTCATGATTCTTGGTTGAATTA 58.748 36.000 0.00 0.00 36.86 1.40
874 2884 6.896860 TGGGTCATGATTCTTGGTTGAATTAT 59.103 34.615 0.00 0.00 36.86 1.28
875 2885 7.399765 TGGGTCATGATTCTTGGTTGAATTATT 59.600 33.333 0.00 0.00 36.86 1.40
876 2886 8.912988 GGGTCATGATTCTTGGTTGAATTATTA 58.087 33.333 0.00 0.00 36.86 0.98
902 2912 3.370840 TTGGATTCCTAGTGCATGCTT 57.629 42.857 20.33 9.84 0.00 3.91
912 2922 1.067749 TGCATGCTTTTGTTGCGCT 59.932 47.368 20.33 0.00 39.23 5.92
953 2963 2.094545 CCTAAAATCTGCAGGTTGCCAC 60.095 50.000 14.22 0.00 44.23 5.01
998 3008 0.106419 CCTCCTAGGGCTCGTCTCTT 60.106 60.000 9.46 0.00 0.00 2.85
1000 3010 0.624254 TCCTAGGGCTCGTCTCTTGA 59.376 55.000 9.46 0.00 0.00 3.02
1062 3229 2.749621 CTCCTTTAACTCACCACATGCC 59.250 50.000 0.00 0.00 0.00 4.40
1112 3279 0.690762 AGCGGTCCCAAACACATAGT 59.309 50.000 0.00 0.00 0.00 2.12
1193 3360 4.696455 CAAAGTTGGGAGCTGAAATTTGT 58.304 39.130 0.00 0.00 34.21 2.83
1194 3361 4.590850 AAGTTGGGAGCTGAAATTTGTC 57.409 40.909 0.00 0.00 0.00 3.18
1195 3362 3.837355 AGTTGGGAGCTGAAATTTGTCT 58.163 40.909 0.00 0.00 0.00 3.41
1196 3363 3.823304 AGTTGGGAGCTGAAATTTGTCTC 59.177 43.478 0.00 0.00 0.00 3.36
1197 3364 3.795688 TGGGAGCTGAAATTTGTCTCT 57.204 42.857 0.00 0.00 0.00 3.10
1198 3365 4.104383 TGGGAGCTGAAATTTGTCTCTT 57.896 40.909 0.00 0.00 0.00 2.85
1199 3366 4.074970 TGGGAGCTGAAATTTGTCTCTTC 58.925 43.478 0.00 0.00 0.00 2.87
1200 3367 4.202503 TGGGAGCTGAAATTTGTCTCTTCT 60.203 41.667 0.00 0.00 0.00 2.85
1201 3368 4.764308 GGGAGCTGAAATTTGTCTCTTCTT 59.236 41.667 0.00 0.00 0.00 2.52
1202 3369 5.242615 GGGAGCTGAAATTTGTCTCTTCTTT 59.757 40.000 0.00 0.00 0.00 2.52
1203 3370 6.239148 GGGAGCTGAAATTTGTCTCTTCTTTT 60.239 38.462 0.00 0.00 0.00 2.27
1204 3371 7.205992 GGAGCTGAAATTTGTCTCTTCTTTTT 58.794 34.615 0.00 0.00 0.00 1.94
1222 3389 3.915437 TTTTGTGCGGAGAAATCTTCC 57.085 42.857 0.00 0.00 0.00 3.46
1279 3449 4.315803 AGGTTTCCAAATAGTCGACTGTG 58.684 43.478 28.12 20.55 0.00 3.66
1365 3535 8.934023 ATAAGATTAGAGAAGTACTCCCTCTG 57.066 38.462 25.89 0.00 45.96 3.35
1366 3536 6.335781 AGATTAGAGAAGTACTCCCTCTGT 57.664 41.667 25.89 18.42 45.96 3.41
1367 3537 7.454553 AGATTAGAGAAGTACTCCCTCTGTA 57.545 40.000 25.89 18.16 45.96 2.74
1368 3538 7.874252 AGATTAGAGAAGTACTCCCTCTGTAA 58.126 38.462 25.89 19.61 45.96 2.41
1369 3539 7.996644 AGATTAGAGAAGTACTCCCTCTGTAAG 59.003 40.741 25.89 0.00 45.96 2.34
1370 3540 4.862371 AGAGAAGTACTCCCTCTGTAAGG 58.138 47.826 20.55 0.00 45.96 2.69
1371 3541 4.540906 AGAGAAGTACTCCCTCTGTAAGGA 59.459 45.833 20.55 0.00 45.83 3.36
1372 3542 4.641541 GAGAAGTACTCCCTCTGTAAGGAC 59.358 50.000 14.56 0.00 45.83 3.85
1373 3543 5.807063 GAGAAGTACTCCCTCTGTAAGGACA 60.807 48.000 14.56 0.00 45.83 4.02
1374 3544 7.086397 GAGAAGTACTCCCTCTGTAAGGACAT 61.086 46.154 14.56 0.00 45.83 3.06
1375 3545 7.855038 GAGAAGTACTCCCTCTGTAAGGACATA 60.855 44.444 14.56 0.00 45.83 2.29
1393 3563 9.601217 AAGGACATATAACAGTGTTTAGATGAC 57.399 33.333 14.90 13.92 35.25 3.06
1394 3564 8.982723 AGGACATATAACAGTGTTTAGATGACT 58.017 33.333 14.90 14.07 35.25 3.41
1403 3573 9.640963 AACAGTGTTTAGATGACTAATACACTC 57.359 33.333 20.61 8.34 45.29 3.51
1404 3574 9.026121 ACAGTGTTTAGATGACTAATACACTCT 57.974 33.333 20.61 14.00 45.29 3.24
1405 3575 9.862371 CAGTGTTTAGATGACTAATACACTCTT 57.138 33.333 20.61 9.60 45.29 2.85
1463 3639 9.976255 TTATAATTGGATTCGTCGTTACAAAAG 57.024 29.630 0.00 0.00 0.00 2.27
1469 3645 6.144402 TGGATTCGTCGTTACAAAAGAAGTAC 59.856 38.462 0.00 0.00 0.00 2.73
1618 3799 0.032117 ACATCATGGAGGAGGACCGA 60.032 55.000 0.00 0.00 41.83 4.69
1645 3826 0.546122 GCAGGGTGTATGACATGGGA 59.454 55.000 0.00 0.00 0.00 4.37
1696 3877 2.188994 GAGCTGCGGGATCTGCTT 59.811 61.111 10.94 0.00 40.58 3.91
1739 3920 1.447838 GAGTTCATCTTCGGCGCCA 60.448 57.895 28.98 11.20 0.00 5.69
1795 3976 2.587889 CCGTCCGCCCCAAACTAT 59.412 61.111 0.00 0.00 0.00 2.12
1837 4018 2.742372 CCTCGGCACCCAAAGTCG 60.742 66.667 0.00 0.00 0.00 4.18
1839 4020 3.530910 CTCGGCACCCAAAGTCGGT 62.531 63.158 0.00 0.00 0.00 4.69
1843 4024 1.303317 GCACCCAAAGTCGGTCCAT 60.303 57.895 0.00 0.00 0.00 3.41
2104 4285 0.035056 CGGCCTTGAACCTCCTCAAT 60.035 55.000 0.00 0.00 34.86 2.57
2105 4286 1.467920 GGCCTTGAACCTCCTCAATG 58.532 55.000 0.00 0.00 34.86 2.82
2107 4288 1.615384 GCCTTGAACCTCCTCAATGCT 60.615 52.381 6.41 0.00 41.22 3.79
2348 4529 2.362120 GCAGGGCAGCCATGAAGT 60.362 61.111 30.35 0.00 37.52 3.01
2455 4636 0.383590 CCAACACAACATTCGGCACA 59.616 50.000 0.00 0.00 0.00 4.57
2458 4639 1.317613 ACACAACATTCGGCACACAT 58.682 45.000 0.00 0.00 0.00 3.21
2460 4641 0.597568 ACAACATTCGGCACACATGG 59.402 50.000 0.00 0.00 0.00 3.66
2518 4699 2.434428 CTCAGCTGCAGGAAATTCACT 58.566 47.619 17.12 0.00 0.00 3.41
2550 4731 9.838975 CGGAGCATGAGATATCTATGTTATATC 57.161 37.037 4.89 0.00 36.83 1.63
2591 4814 6.062749 CCTAGCTACTCCTACTTGTGTATCA 58.937 44.000 0.00 0.00 0.00 2.15
2592 4815 6.717540 CCTAGCTACTCCTACTTGTGTATCAT 59.282 42.308 0.00 0.00 0.00 2.45
2594 4817 7.513371 AGCTACTCCTACTTGTGTATCATAC 57.487 40.000 0.00 0.00 0.00 2.39
2596 4819 6.017275 GCTACTCCTACTTGTGTATCATACGT 60.017 42.308 0.00 0.00 0.00 3.57
2722 4979 1.556451 AGCGAGGGTTTATACCGGTTT 59.444 47.619 15.04 7.86 46.04 3.27
2751 5008 2.342648 GGGACGTCCAGTGTGGTC 59.657 66.667 34.40 12.03 39.03 4.02
2778 5035 0.973632 ATGTGGTGAGGAGCGTGTTA 59.026 50.000 0.00 0.00 0.00 2.41
2801 5058 0.455410 GGATTTAGCAATGCGCACCA 59.545 50.000 14.90 0.00 46.13 4.17
2802 5059 1.067516 GGATTTAGCAATGCGCACCAT 59.932 47.619 14.90 0.00 46.13 3.55
2803 5060 2.293122 GGATTTAGCAATGCGCACCATA 59.707 45.455 14.90 0.00 46.13 2.74
2804 5061 3.057315 GGATTTAGCAATGCGCACCATAT 60.057 43.478 14.90 0.00 46.13 1.78
2836 5093 2.158827 TCATGACGGGGGTGATTACATG 60.159 50.000 0.00 0.00 36.17 3.21
2848 5105 3.064820 GTGATTACATGTTTGTAGGCGGG 59.935 47.826 2.30 0.00 39.43 6.13
2867 5124 2.336667 GGCAACCGCGTTAGTAACTAA 58.663 47.619 4.92 0.00 39.92 2.24
2921 5178 6.697455 TGTACATCAAGTAATTGAGATCGAGC 59.303 38.462 11.67 0.00 33.72 5.03
2929 5186 7.995463 AGTAATTGAGATCGAGCTCTTTTAC 57.005 36.000 28.96 28.96 35.53 2.01
2932 5189 2.121009 GAGATCGAGCTCTTTTACGGC 58.879 52.381 22.99 0.00 32.16 5.68
2947 5204 1.373497 CGGCGCATCATACTCCCTC 60.373 63.158 10.83 0.00 0.00 4.30
2954 5211 2.224402 GCATCATACTCCCTCCAAGACC 60.224 54.545 0.00 0.00 0.00 3.85
2983 5240 9.059485 GTAGTATTAAATAATCTCAGCCGTACG 57.941 37.037 8.69 8.69 0.00 3.67
2984 5241 7.655490 AGTATTAAATAATCTCAGCCGTACGT 58.345 34.615 15.21 0.00 0.00 3.57
2996 5253 2.132762 GCCGTACGTTGATTAGATGGG 58.867 52.381 15.21 0.00 0.00 4.00
3072 5329 2.180017 CTGCGCTCATTGTTGCCC 59.820 61.111 9.73 0.00 0.00 5.36
3093 5350 4.889856 CGGTCATCGCGGCATCCA 62.890 66.667 6.13 0.00 0.00 3.41
3095 5352 2.320587 GGTCATCGCGGCATCCATC 61.321 63.158 6.13 0.00 0.00 3.51
3096 5353 1.301244 GTCATCGCGGCATCCATCT 60.301 57.895 6.13 0.00 0.00 2.90
3097 5354 0.038251 GTCATCGCGGCATCCATCTA 60.038 55.000 6.13 0.00 0.00 1.98
3098 5355 0.897621 TCATCGCGGCATCCATCTAT 59.102 50.000 6.13 0.00 0.00 1.98
3099 5356 2.099405 TCATCGCGGCATCCATCTATA 58.901 47.619 6.13 0.00 0.00 1.31
3100 5357 2.159240 TCATCGCGGCATCCATCTATAC 60.159 50.000 6.13 0.00 0.00 1.47
3101 5358 1.545841 TCGCGGCATCCATCTATACT 58.454 50.000 6.13 0.00 0.00 2.12
3102 5359 1.202348 TCGCGGCATCCATCTATACTG 59.798 52.381 6.13 0.00 0.00 2.74
3103 5360 1.067565 CGCGGCATCCATCTATACTGT 60.068 52.381 0.00 0.00 0.00 3.55
3104 5361 2.163613 CGCGGCATCCATCTATACTGTA 59.836 50.000 0.00 0.00 0.00 2.74
3106 5363 3.759418 CGGCATCCATCTATACTGTACG 58.241 50.000 0.00 0.00 0.00 3.67
3108 5365 4.672024 CGGCATCCATCTATACTGTACGAC 60.672 50.000 0.00 0.00 0.00 4.34
3109 5366 4.217767 GGCATCCATCTATACTGTACGACA 59.782 45.833 0.00 0.00 0.00 4.35
3110 5367 5.278808 GGCATCCATCTATACTGTACGACAA 60.279 44.000 0.00 0.00 0.00 3.18
3111 5368 6.390721 GCATCCATCTATACTGTACGACAAT 58.609 40.000 0.00 0.00 0.00 2.71
3112 5369 6.528423 GCATCCATCTATACTGTACGACAATC 59.472 42.308 0.00 0.00 0.00 2.67
3113 5370 6.570672 TCCATCTATACTGTACGACAATCC 57.429 41.667 0.00 0.00 0.00 3.01
3114 5371 6.066032 TCCATCTATACTGTACGACAATCCA 58.934 40.000 0.00 0.00 0.00 3.41
3115 5372 6.719829 TCCATCTATACTGTACGACAATCCAT 59.280 38.462 0.00 0.00 0.00 3.41
3116 5373 7.232737 TCCATCTATACTGTACGACAATCCATT 59.767 37.037 0.00 0.00 0.00 3.16
3195 5452 4.473199 GTTCGTCCATCCTTTGTTTTAGC 58.527 43.478 0.00 0.00 0.00 3.09
3196 5453 4.015872 TCGTCCATCCTTTGTTTTAGCT 57.984 40.909 0.00 0.00 0.00 3.32
3202 5459 7.148239 CGTCCATCCTTTGTTTTAGCTAGATTT 60.148 37.037 0.00 0.00 0.00 2.17
3234 5492 3.529504 CATGTGTTGCTTGCGTGC 58.470 55.556 0.00 0.00 0.00 5.34
3285 5543 0.608640 GATCGCCGGGATCTATTGGT 59.391 55.000 19.79 0.00 46.66 3.67
3304 5563 4.180817 TGGTTGCTCATCATAACGTAGTG 58.819 43.478 0.00 0.00 45.00 2.74
3321 5580 4.807834 CGTAGTGATGCATCTGAACTTGAT 59.192 41.667 26.32 4.63 0.00 2.57
3411 5703 1.338136 AAGGATCGATTGGGGCGAGT 61.338 55.000 0.00 0.00 41.49 4.18
3412 5704 0.469331 AGGATCGATTGGGGCGAGTA 60.469 55.000 0.00 0.00 41.49 2.59
3413 5705 0.391597 GGATCGATTGGGGCGAGTAA 59.608 55.000 0.00 0.00 41.49 2.24
3414 5706 1.605712 GGATCGATTGGGGCGAGTAAG 60.606 57.143 0.00 0.00 41.49 2.34
3415 5707 0.393077 ATCGATTGGGGCGAGTAAGG 59.607 55.000 0.00 0.00 41.49 2.69
3416 5708 0.685131 TCGATTGGGGCGAGTAAGGA 60.685 55.000 0.00 0.00 33.33 3.36
3417 5709 0.393077 CGATTGGGGCGAGTAAGGAT 59.607 55.000 0.00 0.00 0.00 3.24
3418 5710 1.873903 CGATTGGGGCGAGTAAGGATG 60.874 57.143 0.00 0.00 0.00 3.51
3419 5711 0.474184 ATTGGGGCGAGTAAGGATGG 59.526 55.000 0.00 0.00 0.00 3.51
3420 5712 2.111251 GGGGCGAGTAAGGATGGC 59.889 66.667 0.00 0.00 0.00 4.40
3421 5713 2.742116 GGGGCGAGTAAGGATGGCA 61.742 63.158 0.00 0.00 0.00 4.92
3422 5714 1.223487 GGGCGAGTAAGGATGGCAA 59.777 57.895 0.00 0.00 0.00 4.52
3423 5715 0.179018 GGGCGAGTAAGGATGGCAAT 60.179 55.000 0.00 0.00 0.00 3.56
3424 5716 0.947244 GGCGAGTAAGGATGGCAATG 59.053 55.000 0.00 0.00 0.00 2.82
3425 5717 0.947244 GCGAGTAAGGATGGCAATGG 59.053 55.000 0.00 0.00 0.00 3.16
3426 5718 1.597742 CGAGTAAGGATGGCAATGGG 58.402 55.000 0.00 0.00 0.00 4.00
3427 5719 1.134098 CGAGTAAGGATGGCAATGGGT 60.134 52.381 0.00 0.00 0.00 4.51
3428 5720 2.576615 GAGTAAGGATGGCAATGGGTC 58.423 52.381 0.00 0.00 0.00 4.46
3429 5721 1.134098 AGTAAGGATGGCAATGGGTCG 60.134 52.381 0.00 0.00 0.00 4.79
3430 5722 0.182537 TAAGGATGGCAATGGGTCGG 59.817 55.000 0.00 0.00 0.00 4.79
3431 5723 2.519302 GGATGGCAATGGGTCGGG 60.519 66.667 0.00 0.00 0.00 5.14
3432 5724 2.275418 GATGGCAATGGGTCGGGT 59.725 61.111 0.00 0.00 0.00 5.28
3433 5725 1.379843 GATGGCAATGGGTCGGGTT 60.380 57.895 0.00 0.00 0.00 4.11
3434 5726 1.666209 GATGGCAATGGGTCGGGTTG 61.666 60.000 0.00 0.00 0.00 3.77
3435 5727 2.034999 GGCAATGGGTCGGGTTGA 59.965 61.111 0.00 0.00 0.00 3.18
3436 5728 1.605165 GGCAATGGGTCGGGTTGAA 60.605 57.895 0.00 0.00 0.00 2.69
3437 5729 1.584495 GCAATGGGTCGGGTTGAAC 59.416 57.895 0.00 0.00 0.00 3.18
3438 5730 1.175983 GCAATGGGTCGGGTTGAACA 61.176 55.000 0.00 0.00 35.31 3.18
3439 5731 1.323412 CAATGGGTCGGGTTGAACAA 58.677 50.000 0.00 0.00 35.31 2.83
3440 5732 1.000717 CAATGGGTCGGGTTGAACAAC 60.001 52.381 8.91 8.91 35.31 3.32
3441 5733 0.183971 ATGGGTCGGGTTGAACAACA 59.816 50.000 17.43 0.00 42.85 3.33
3442 5734 0.183971 TGGGTCGGGTTGAACAACAT 59.816 50.000 17.43 0.00 42.85 2.71
3443 5735 0.879090 GGGTCGGGTTGAACAACATC 59.121 55.000 17.43 9.23 42.85 3.06
3444 5736 1.600023 GGTCGGGTTGAACAACATCA 58.400 50.000 17.43 0.12 42.85 3.07
3445 5737 1.950909 GGTCGGGTTGAACAACATCAA 59.049 47.619 17.43 0.00 42.85 2.57
3446 5738 2.359531 GGTCGGGTTGAACAACATCAAA 59.640 45.455 17.43 0.00 40.76 2.69
3447 5739 3.005367 GGTCGGGTTGAACAACATCAAAT 59.995 43.478 17.43 0.00 40.76 2.32
3448 5740 4.226761 GTCGGGTTGAACAACATCAAATC 58.773 43.478 17.43 0.92 40.76 2.17
3449 5741 3.254657 TCGGGTTGAACAACATCAAATCC 59.745 43.478 17.43 7.98 40.76 3.01
3450 5742 3.005261 CGGGTTGAACAACATCAAATCCA 59.995 43.478 17.43 0.00 40.76 3.41
3451 5743 4.321899 CGGGTTGAACAACATCAAATCCAT 60.322 41.667 17.43 0.00 40.76 3.41
3452 5744 5.105957 CGGGTTGAACAACATCAAATCCATA 60.106 40.000 17.43 0.00 40.76 2.74
3453 5745 6.405731 CGGGTTGAACAACATCAAATCCATAT 60.406 38.462 17.43 0.00 40.76 1.78
3454 5746 6.980397 GGGTTGAACAACATCAAATCCATATC 59.020 38.462 17.43 0.00 40.76 1.63
3455 5747 6.980397 GGTTGAACAACATCAAATCCATATCC 59.020 38.462 17.43 0.00 40.76 2.59
3456 5748 7.363705 GGTTGAACAACATCAAATCCATATCCA 60.364 37.037 17.43 0.00 40.76 3.41
3457 5749 7.901283 TGAACAACATCAAATCCATATCCAT 57.099 32.000 0.00 0.00 0.00 3.41
3458 5750 8.993404 TGAACAACATCAAATCCATATCCATA 57.007 30.769 0.00 0.00 0.00 2.74
3459 5751 9.590828 TGAACAACATCAAATCCATATCCATAT 57.409 29.630 0.00 0.00 0.00 1.78
3461 5753 8.585471 ACAACATCAAATCCATATCCATATCC 57.415 34.615 0.00 0.00 0.00 2.59
3462 5754 8.172070 ACAACATCAAATCCATATCCATATCCA 58.828 33.333 0.00 0.00 0.00 3.41
3463 5755 9.197306 CAACATCAAATCCATATCCATATCCAT 57.803 33.333 0.00 0.00 0.00 3.41
3464 5756 8.762481 ACATCAAATCCATATCCATATCCATG 57.238 34.615 0.00 0.00 0.00 3.66
3465 5757 8.562635 ACATCAAATCCATATCCATATCCATGA 58.437 33.333 0.00 0.00 33.67 3.07
3466 5758 9.416284 CATCAAATCCATATCCATATCCATGAA 57.584 33.333 0.00 0.00 33.67 2.57
3467 5759 9.642343 ATCAAATCCATATCCATATCCATGAAG 57.358 33.333 0.00 0.00 33.67 3.02
3468 5760 8.838741 TCAAATCCATATCCATATCCATGAAGA 58.161 33.333 0.00 0.00 33.67 2.87
3469 5761 8.900781 CAAATCCATATCCATATCCATGAAGAC 58.099 37.037 0.00 0.00 33.67 3.01
3470 5762 7.760400 ATCCATATCCATATCCATGAAGACA 57.240 36.000 0.00 0.00 33.67 3.41
3471 5763 7.191593 TCCATATCCATATCCATGAAGACAG 57.808 40.000 0.00 0.00 33.67 3.51
3472 5764 6.732390 TCCATATCCATATCCATGAAGACAGT 59.268 38.462 0.00 0.00 33.67 3.55
3473 5765 7.046652 CCATATCCATATCCATGAAGACAGTC 58.953 42.308 0.00 0.00 33.67 3.51
3474 5766 7.092979 CCATATCCATATCCATGAAGACAGTCT 60.093 40.741 0.00 0.00 33.67 3.24
3475 5767 6.760440 ATCCATATCCATGAAGACAGTCTT 57.240 37.500 16.11 16.11 39.87 3.01
3476 5768 6.566079 TCCATATCCATGAAGACAGTCTTT 57.434 37.500 17.19 2.87 36.73 2.52
3477 5769 6.351711 TCCATATCCATGAAGACAGTCTTTG 58.648 40.000 17.19 11.94 36.73 2.77
3478 5770 5.008415 CCATATCCATGAAGACAGTCTTTGC 59.992 44.000 17.19 6.19 36.73 3.68
3479 5771 2.783135 TCCATGAAGACAGTCTTTGCC 58.217 47.619 17.19 5.48 36.73 4.52
3480 5772 1.815003 CCATGAAGACAGTCTTTGCCC 59.185 52.381 17.19 5.12 36.73 5.36
3481 5773 1.466167 CATGAAGACAGTCTTTGCCCG 59.534 52.381 17.19 1.69 36.73 6.13
3482 5774 0.884704 TGAAGACAGTCTTTGCCCGC 60.885 55.000 17.19 4.06 36.73 6.13
3483 5775 1.578206 GAAGACAGTCTTTGCCCGCC 61.578 60.000 17.19 0.00 36.73 6.13
3484 5776 3.056328 GACAGTCTTTGCCCGCCC 61.056 66.667 0.00 0.00 0.00 6.13
3485 5777 3.842925 GACAGTCTTTGCCCGCCCA 62.843 63.158 0.00 0.00 0.00 5.36
3486 5778 2.361610 CAGTCTTTGCCCGCCCAT 60.362 61.111 0.00 0.00 0.00 4.00
3487 5779 2.361610 AGTCTTTGCCCGCCCATG 60.362 61.111 0.00 0.00 0.00 3.66
3488 5780 2.361104 GTCTTTGCCCGCCCATGA 60.361 61.111 0.00 0.00 0.00 3.07
3489 5781 1.976474 GTCTTTGCCCGCCCATGAA 60.976 57.895 0.00 0.00 0.00 2.57
3490 5782 1.228706 TCTTTGCCCGCCCATGAAA 60.229 52.632 0.00 0.00 0.00 2.69
3491 5783 0.829602 TCTTTGCCCGCCCATGAAAA 60.830 50.000 0.00 0.00 0.00 2.29
3492 5784 0.034616 CTTTGCCCGCCCATGAAAAA 59.965 50.000 0.00 0.00 0.00 1.94
3513 5805 7.665561 AAAAATCCACGGGTGAAAAATTATG 57.334 32.000 0.00 0.00 0.00 1.90
3514 5806 5.993748 AATCCACGGGTGAAAAATTATGT 57.006 34.783 0.00 0.00 0.00 2.29
3515 5807 5.576447 ATCCACGGGTGAAAAATTATGTC 57.424 39.130 0.00 0.00 0.00 3.06
3516 5808 3.759618 TCCACGGGTGAAAAATTATGTCC 59.240 43.478 0.00 0.00 0.00 4.02
3517 5809 3.508012 CCACGGGTGAAAAATTATGTCCA 59.492 43.478 0.00 0.00 0.00 4.02
3518 5810 4.159506 CCACGGGTGAAAAATTATGTCCAT 59.840 41.667 0.00 0.00 0.00 3.41
3519 5811 5.101628 CACGGGTGAAAAATTATGTCCATG 58.898 41.667 0.00 0.00 0.00 3.66
3520 5812 4.770010 ACGGGTGAAAAATTATGTCCATGT 59.230 37.500 0.00 0.00 0.00 3.21
3521 5813 5.105917 ACGGGTGAAAAATTATGTCCATGTC 60.106 40.000 0.00 0.00 0.00 3.06
3522 5814 5.660460 GGGTGAAAAATTATGTCCATGTCC 58.340 41.667 0.00 0.00 0.00 4.02
3523 5815 5.186797 GGGTGAAAAATTATGTCCATGTCCA 59.813 40.000 0.00 0.00 0.00 4.02
3524 5816 6.295575 GGGTGAAAAATTATGTCCATGTCCAA 60.296 38.462 0.00 0.00 0.00 3.53
3525 5817 7.158021 GGTGAAAAATTATGTCCATGTCCAAA 58.842 34.615 0.00 0.00 0.00 3.28
3526 5818 7.117667 GGTGAAAAATTATGTCCATGTCCAAAC 59.882 37.037 0.00 0.00 0.00 2.93
3527 5819 7.117667 GTGAAAAATTATGTCCATGTCCAAACC 59.882 37.037 0.00 0.00 0.00 3.27
3528 5820 6.933514 AAAATTATGTCCATGTCCAAACCT 57.066 33.333 0.00 0.00 0.00 3.50
3529 5821 5.920193 AATTATGTCCATGTCCAAACCTG 57.080 39.130 0.00 0.00 0.00 4.00
3530 5822 4.649267 TTATGTCCATGTCCAAACCTGA 57.351 40.909 0.00 0.00 0.00 3.86
3531 5823 3.744940 ATGTCCATGTCCAAACCTGAT 57.255 42.857 0.00 0.00 0.00 2.90
3532 5824 2.794103 TGTCCATGTCCAAACCTGATG 58.206 47.619 0.00 0.00 0.00 3.07
3533 5825 2.094675 GTCCATGTCCAAACCTGATGG 58.905 52.381 0.00 0.00 39.41 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.840243 ATGCACATTGCTACATTACACAT 57.160 34.783 0.00 0.00 45.31 3.21
30 31 6.094719 TCATCTTCAAAATGCACATTGCTAC 58.905 36.000 8.14 0.00 45.31 3.58
38 39 6.127647 TGAGGGTATTCATCTTCAAAATGCAC 60.128 38.462 0.00 0.00 0.00 4.57
39 40 5.951148 TGAGGGTATTCATCTTCAAAATGCA 59.049 36.000 0.00 0.00 0.00 3.96
40 41 6.455360 TGAGGGTATTCATCTTCAAAATGC 57.545 37.500 0.00 0.00 0.00 3.56
41 42 7.431249 CCATGAGGGTATTCATCTTCAAAATG 58.569 38.462 0.00 0.00 35.67 2.32
42 43 7.592885 CCATGAGGGTATTCATCTTCAAAAT 57.407 36.000 0.00 0.00 35.67 1.82
58 62 7.439056 GCATTATTTCAATACAAACCATGAGGG 59.561 37.037 0.00 0.00 44.81 4.30
147 151 0.555769 TTTCCCACCAGTTCCAGCTT 59.444 50.000 0.00 0.00 0.00 3.74
150 154 2.065899 TTGTTTCCCACCAGTTCCAG 57.934 50.000 0.00 0.00 0.00 3.86
153 157 4.465632 AGTTTTTGTTTCCCACCAGTTC 57.534 40.909 0.00 0.00 0.00 3.01
320 339 2.988493 CCCTGTTGAATTCACATTTGCG 59.012 45.455 7.89 0.00 0.00 4.85
327 346 2.162681 CCAGGTCCCTGTTGAATTCAC 58.837 52.381 7.89 4.45 42.15 3.18
375 401 1.110442 CCCAGAAAGTTGTTGGCACA 58.890 50.000 0.00 0.00 0.00 4.57
459 485 2.338984 GGACGTCTGCCGAACACT 59.661 61.111 16.46 0.00 40.70 3.55
585 1008 7.754851 TTTCCTACCTGAAAACTGGAATAAC 57.245 36.000 0.00 0.00 34.18 1.89
594 1017 7.039313 ACACAGATTTTTCCTACCTGAAAAC 57.961 36.000 0.00 0.00 42.29 2.43
641 2092 3.627237 GGACAAGGATTAATGGCAAGGGA 60.627 47.826 0.00 0.00 0.00 4.20
642 2093 2.695147 GGACAAGGATTAATGGCAAGGG 59.305 50.000 0.00 0.00 0.00 3.95
688 2698 7.419711 AAGAGGAGAATACGAATAAAGTGGA 57.580 36.000 0.00 0.00 0.00 4.02
719 2729 0.554792 AAGAATCATGGCCCCTGAGG 59.445 55.000 0.00 0.00 39.47 3.86
728 2738 8.454106 GTCCGATAATTAATCCAAGAATCATGG 58.546 37.037 0.00 0.00 39.41 3.66
740 2750 4.691216 GCACCTGGAGTCCGATAATTAATC 59.309 45.833 4.30 0.00 0.00 1.75
741 2751 4.102524 TGCACCTGGAGTCCGATAATTAAT 59.897 41.667 4.30 0.00 0.00 1.40
743 2753 3.035363 TGCACCTGGAGTCCGATAATTA 58.965 45.455 4.30 0.00 0.00 1.40
744 2754 1.837439 TGCACCTGGAGTCCGATAATT 59.163 47.619 4.30 0.00 0.00 1.40
745 2755 1.496060 TGCACCTGGAGTCCGATAAT 58.504 50.000 4.30 0.00 0.00 1.28
747 2757 0.752658 CATGCACCTGGAGTCCGATA 59.247 55.000 4.30 0.00 0.00 2.92
748 2758 0.977627 TCATGCACCTGGAGTCCGAT 60.978 55.000 4.30 0.00 0.00 4.18
749 2759 0.977627 ATCATGCACCTGGAGTCCGA 60.978 55.000 4.30 0.00 0.00 4.55
750 2760 0.752658 TATCATGCACCTGGAGTCCG 59.247 55.000 4.30 0.00 0.00 4.79
752 2762 2.432146 TCACTATCATGCACCTGGAGTC 59.568 50.000 0.00 0.00 0.00 3.36
753 2763 2.470990 TCACTATCATGCACCTGGAGT 58.529 47.619 0.00 0.00 0.00 3.85
754 2764 3.661944 GATCACTATCATGCACCTGGAG 58.338 50.000 0.00 0.00 31.93 3.86
755 2765 2.036346 CGATCACTATCATGCACCTGGA 59.964 50.000 0.00 0.00 31.93 3.86
756 2766 2.036346 TCGATCACTATCATGCACCTGG 59.964 50.000 0.00 0.00 31.93 4.45
757 2767 3.375782 TCGATCACTATCATGCACCTG 57.624 47.619 0.00 0.00 31.93 4.00
758 2768 3.056250 GGATCGATCACTATCATGCACCT 60.056 47.826 25.93 0.00 31.93 4.00
759 2769 3.056250 AGGATCGATCACTATCATGCACC 60.056 47.826 25.93 5.34 31.93 5.01
760 2770 4.172505 GAGGATCGATCACTATCATGCAC 58.827 47.826 25.93 4.90 31.93 4.57
761 2771 3.828451 TGAGGATCGATCACTATCATGCA 59.172 43.478 25.93 10.89 38.61 3.96
762 2772 4.446994 TGAGGATCGATCACTATCATGC 57.553 45.455 25.93 6.11 38.61 4.06
765 2775 9.072375 GGAATATATGAGGATCGATCACTATCA 57.928 37.037 25.93 21.41 38.61 2.15
766 2776 8.519526 GGGAATATATGAGGATCGATCACTATC 58.480 40.741 25.93 17.15 38.61 2.08
769 2779 6.097554 GTGGGAATATATGAGGATCGATCACT 59.902 42.308 25.93 19.50 38.61 3.41
770 2780 6.276847 GTGGGAATATATGAGGATCGATCAC 58.723 44.000 25.93 18.64 38.61 3.06
771 2781 5.067805 CGTGGGAATATATGAGGATCGATCA 59.932 44.000 25.93 8.75 38.61 2.92
772 2782 5.508153 CCGTGGGAATATATGAGGATCGATC 60.508 48.000 17.36 17.36 38.61 3.69
773 2783 4.342378 CCGTGGGAATATATGAGGATCGAT 59.658 45.833 0.00 0.00 38.61 3.59
775 2785 3.699538 TCCGTGGGAATATATGAGGATCG 59.300 47.826 0.00 0.00 38.61 3.69
776 2786 5.878406 ATCCGTGGGAATATATGAGGATC 57.122 43.478 0.00 0.00 34.34 3.36
777 2787 6.202331 TGTATCCGTGGGAATATATGAGGAT 58.798 40.000 0.00 0.00 40.06 3.24
779 2789 5.932619 TGTATCCGTGGGAATATATGAGG 57.067 43.478 0.00 0.00 34.34 3.86
780 2790 8.642432 ACATATGTATCCGTGGGAATATATGAG 58.358 37.037 20.69 7.14 37.11 2.90
781 2791 8.421002 CACATATGTATCCGTGGGAATATATGA 58.579 37.037 20.69 0.00 37.11 2.15
782 2792 7.657354 CCACATATGTATCCGTGGGAATATATG 59.343 40.741 8.32 16.33 44.26 1.78
783 2793 7.735917 CCACATATGTATCCGTGGGAATATAT 58.264 38.462 8.32 0.00 44.26 0.86
785 2795 5.989477 CCACATATGTATCCGTGGGAATAT 58.011 41.667 8.32 0.00 44.26 1.28
787 2797 4.286297 CCACATATGTATCCGTGGGAAT 57.714 45.455 8.32 0.00 44.26 3.01
792 2802 3.320826 TCCACTCCACATATGTATCCGTG 59.679 47.826 8.32 12.55 0.00 4.94
793 2803 3.572642 TCCACTCCACATATGTATCCGT 58.427 45.455 8.32 0.99 0.00 4.69
794 2804 3.574396 ACTCCACTCCACATATGTATCCG 59.426 47.826 8.32 0.00 0.00 4.18
795 2805 4.835615 AGACTCCACTCCACATATGTATCC 59.164 45.833 8.32 0.00 0.00 2.59
796 2806 5.772672 AGAGACTCCACTCCACATATGTATC 59.227 44.000 8.32 0.00 37.60 2.24
797 2807 5.710646 AGAGACTCCACTCCACATATGTAT 58.289 41.667 8.32 0.00 37.60 2.29
798 2808 5.130705 AGAGACTCCACTCCACATATGTA 57.869 43.478 8.32 0.00 37.60 2.29
799 2809 3.987745 AGAGACTCCACTCCACATATGT 58.012 45.455 1.41 1.41 37.60 2.29
800 2810 5.350504 AAAGAGACTCCACTCCACATATG 57.649 43.478 0.00 0.00 37.60 1.78
801 2811 7.682787 AATAAAGAGACTCCACTCCACATAT 57.317 36.000 0.00 0.00 37.60 1.78
802 2812 7.038302 ACAAATAAAGAGACTCCACTCCACATA 60.038 37.037 0.00 0.00 37.60 2.29
803 2813 6.176183 CAAATAAAGAGACTCCACTCCACAT 58.824 40.000 0.00 0.00 37.60 3.21
804 2814 5.071788 ACAAATAAAGAGACTCCACTCCACA 59.928 40.000 0.00 0.00 37.60 4.17
805 2815 5.552178 ACAAATAAAGAGACTCCACTCCAC 58.448 41.667 0.00 0.00 37.60 4.02
806 2816 5.825593 ACAAATAAAGAGACTCCACTCCA 57.174 39.130 0.00 0.00 37.60 3.86
807 2817 8.261522 AGAATACAAATAAAGAGACTCCACTCC 58.738 37.037 0.00 0.00 37.60 3.85
808 2818 9.308318 GAGAATACAAATAAAGAGACTCCACTC 57.692 37.037 0.00 0.00 37.19 3.51
809 2819 9.041354 AGAGAATACAAATAAAGAGACTCCACT 57.959 33.333 0.00 0.00 0.00 4.00
810 2820 9.660180 AAGAGAATACAAATAAAGAGACTCCAC 57.340 33.333 0.00 0.00 0.00 4.02
811 2821 9.877178 GAAGAGAATACAAATAAAGAGACTCCA 57.123 33.333 0.00 0.00 0.00 3.86
841 2851 6.496565 ACCAAGAATCATGACCCATGTAAAAA 59.503 34.615 0.00 0.00 41.98 1.94
842 2852 6.015918 ACCAAGAATCATGACCCATGTAAAA 58.984 36.000 0.00 0.00 41.98 1.52
843 2853 5.579047 ACCAAGAATCATGACCCATGTAAA 58.421 37.500 0.00 0.00 41.98 2.01
844 2854 5.191727 ACCAAGAATCATGACCCATGTAA 57.808 39.130 0.00 0.00 41.98 2.41
845 2855 4.860802 ACCAAGAATCATGACCCATGTA 57.139 40.909 0.00 0.00 41.98 2.29
846 2856 3.744940 ACCAAGAATCATGACCCATGT 57.255 42.857 0.00 0.00 41.98 3.21
847 2857 4.018490 TCAACCAAGAATCATGACCCATG 58.982 43.478 0.00 0.74 42.60 3.66
848 2858 4.320546 TCAACCAAGAATCATGACCCAT 57.679 40.909 0.00 0.00 0.00 4.00
849 2859 3.805066 TCAACCAAGAATCATGACCCA 57.195 42.857 0.00 0.00 0.00 4.51
850 2860 5.665916 AATTCAACCAAGAATCATGACCC 57.334 39.130 0.00 0.00 37.24 4.46
860 2870 9.486123 TCCAATCCAATAATAATTCAACCAAGA 57.514 29.630 0.00 0.00 0.00 3.02
864 2874 9.710900 GGAATCCAATCCAATAATAATTCAACC 57.289 33.333 0.00 0.00 39.42 3.77
870 2880 9.247861 GCACTAGGAATCCAATCCAATAATAAT 57.752 33.333 0.61 0.00 42.27 1.28
871 2881 8.224025 TGCACTAGGAATCCAATCCAATAATAA 58.776 33.333 0.61 0.00 42.27 1.40
872 2882 7.754624 TGCACTAGGAATCCAATCCAATAATA 58.245 34.615 0.61 0.00 42.27 0.98
873 2883 6.613699 TGCACTAGGAATCCAATCCAATAAT 58.386 36.000 0.61 0.00 42.27 1.28
874 2884 6.012337 TGCACTAGGAATCCAATCCAATAA 57.988 37.500 0.61 0.00 42.27 1.40
875 2885 5.645056 TGCACTAGGAATCCAATCCAATA 57.355 39.130 0.61 0.00 42.27 1.90
876 2886 4.524802 TGCACTAGGAATCCAATCCAAT 57.475 40.909 0.61 0.00 42.27 3.16
877 2887 4.209538 CATGCACTAGGAATCCAATCCAA 58.790 43.478 0.61 0.00 42.27 3.53
878 2888 3.824133 CATGCACTAGGAATCCAATCCA 58.176 45.455 0.61 0.00 42.27 3.41
879 2889 2.555757 GCATGCACTAGGAATCCAATCC 59.444 50.000 14.21 0.00 39.96 3.01
880 2890 3.484407 AGCATGCACTAGGAATCCAATC 58.516 45.455 21.98 0.00 0.00 2.67
902 2912 0.953727 ATCTGCAGAAGCGCAACAAA 59.046 45.000 22.50 0.00 46.23 2.83
912 2922 2.279741 GATTACCACGCATCTGCAGAA 58.720 47.619 22.50 4.23 42.21 3.02
953 2963 7.493313 CACATATATATACATACATGCACGCG 58.507 38.462 3.53 3.53 0.00 6.01
998 3008 0.986527 TTTGCTCTGCTCTCCCATCA 59.013 50.000 0.00 0.00 0.00 3.07
1000 3010 2.376109 CATTTTGCTCTGCTCTCCCAT 58.624 47.619 0.00 0.00 0.00 4.00
1112 3279 2.036217 ACGTACCAGTCAACGGATTGAA 59.964 45.455 0.00 0.00 46.40 2.69
1201 3368 3.304391 CGGAAGATTTCTCCGCACAAAAA 60.304 43.478 0.00 0.00 40.25 1.94
1202 3369 2.225491 CGGAAGATTTCTCCGCACAAAA 59.775 45.455 0.00 0.00 40.25 2.44
1203 3370 1.804151 CGGAAGATTTCTCCGCACAAA 59.196 47.619 0.00 0.00 40.25 2.83
1204 3371 1.001520 TCGGAAGATTTCTCCGCACAA 59.998 47.619 6.39 0.00 45.66 3.33
1205 3372 0.606096 TCGGAAGATTTCTCCGCACA 59.394 50.000 6.39 0.00 45.66 4.57
1206 3373 1.135083 TCTCGGAAGATTTCTCCGCAC 60.135 52.381 6.39 0.00 45.66 5.34
1207 3374 1.182667 TCTCGGAAGATTTCTCCGCA 58.817 50.000 6.39 0.00 45.66 5.69
1208 3375 2.295253 TTCTCGGAAGATTTCTCCGC 57.705 50.000 6.39 0.00 45.66 5.54
1210 3377 6.403746 GGACAAATTTCTCGGAAGATTTCTCC 60.404 42.308 0.00 0.00 40.84 3.71
1211 3378 6.547283 GGACAAATTTCTCGGAAGATTTCTC 58.453 40.000 0.00 0.00 40.84 2.87
1212 3379 5.122396 CGGACAAATTTCTCGGAAGATTTCT 59.878 40.000 0.00 0.00 40.84 2.52
1213 3380 5.106673 ACGGACAAATTTCTCGGAAGATTTC 60.107 40.000 7.79 0.00 40.84 2.17
1214 3381 4.760204 ACGGACAAATTTCTCGGAAGATTT 59.240 37.500 7.79 0.00 40.84 2.17
1215 3382 4.324267 ACGGACAAATTTCTCGGAAGATT 58.676 39.130 7.79 0.00 40.84 2.40
1216 3383 3.939066 ACGGACAAATTTCTCGGAAGAT 58.061 40.909 7.79 0.00 40.84 2.40
1217 3384 3.396260 ACGGACAAATTTCTCGGAAGA 57.604 42.857 7.79 0.00 39.12 2.87
1218 3385 4.483476 AAACGGACAAATTTCTCGGAAG 57.517 40.909 7.79 0.00 0.00 3.46
1219 3386 4.096682 ACAAAACGGACAAATTTCTCGGAA 59.903 37.500 7.79 0.00 0.00 4.30
1220 3387 3.628487 ACAAAACGGACAAATTTCTCGGA 59.372 39.130 7.79 0.00 0.00 4.55
1221 3388 3.959943 ACAAAACGGACAAATTTCTCGG 58.040 40.909 8.53 4.87 0.00 4.63
1222 3389 5.966503 TGTTACAAAACGGACAAATTTCTCG 59.033 36.000 0.00 0.00 38.53 4.04
1223 3390 7.096230 CCATGTTACAAAACGGACAAATTTCTC 60.096 37.037 0.00 0.00 38.53 2.87
1224 3391 6.699642 CCATGTTACAAAACGGACAAATTTCT 59.300 34.615 0.00 0.00 38.53 2.52
1225 3392 6.697892 TCCATGTTACAAAACGGACAAATTTC 59.302 34.615 0.00 0.00 38.53 2.17
1226 3393 6.574350 TCCATGTTACAAAACGGACAAATTT 58.426 32.000 0.00 0.00 38.53 1.82
1227 3394 6.039941 TCTCCATGTTACAAAACGGACAAATT 59.960 34.615 0.00 0.00 38.53 1.82
1228 3395 5.533154 TCTCCATGTTACAAAACGGACAAAT 59.467 36.000 0.00 0.00 38.53 2.32
1229 3396 4.882427 TCTCCATGTTACAAAACGGACAAA 59.118 37.500 0.00 0.00 38.53 2.83
1230 3397 4.452825 TCTCCATGTTACAAAACGGACAA 58.547 39.130 0.00 0.00 38.53 3.18
1231 3398 4.074627 TCTCCATGTTACAAAACGGACA 57.925 40.909 0.00 0.00 38.53 4.02
1232 3399 4.319984 GGTTCTCCATGTTACAAAACGGAC 60.320 45.833 0.00 0.00 38.53 4.79
1279 3449 2.370849 TGTCACTCTAAAAGACCACCCC 59.629 50.000 0.00 0.00 0.00 4.95
1349 3519 4.641541 GTCCTTACAGAGGGAGTACTTCTC 59.358 50.000 15.32 15.32 46.31 2.87
1351 3521 4.342359 TGTCCTTACAGAGGGAGTACTTC 58.658 47.826 0.00 0.00 46.31 3.01
1352 3522 4.399483 TGTCCTTACAGAGGGAGTACTT 57.601 45.455 0.00 0.00 46.31 2.24
1355 3525 7.589081 TGTTATATGTCCTTACAGAGGGAGTA 58.411 38.462 0.00 0.00 46.31 2.59
1359 3529 6.098409 ACACTGTTATATGTCCTTACAGAGGG 59.902 42.308 0.00 0.00 46.31 4.30
1367 3537 9.601217 GTCATCTAAACACTGTTATATGTCCTT 57.399 33.333 0.00 0.00 0.00 3.36
1368 3538 8.982723 AGTCATCTAAACACTGTTATATGTCCT 58.017 33.333 0.00 0.00 0.00 3.85
1377 3547 9.640963 GAGTGTATTAGTCATCTAAACACTGTT 57.359 33.333 23.24 11.93 45.08 3.16
1378 3548 9.026121 AGAGTGTATTAGTCATCTAAACACTGT 57.974 33.333 23.24 19.93 45.08 3.55
1379 3549 9.862371 AAGAGTGTATTAGTCATCTAAACACTG 57.138 33.333 23.24 0.00 45.08 3.66
1398 3568 9.570468 TGTCTCCGTATAGAAATATAAGAGTGT 57.430 33.333 0.00 0.00 0.00 3.55
1437 3607 9.976255 CTTTTGTAACGACGAATCCAATTATAA 57.024 29.630 0.00 0.00 0.00 0.98
1494 3671 9.127006 TGTTAAACGACAATTCATTCATTCATG 57.873 29.630 0.00 0.00 0.00 3.07
1495 3672 9.689976 TTGTTAAACGACAATTCATTCATTCAT 57.310 25.926 0.00 0.00 34.77 2.57
1496 3673 9.521503 TTTGTTAAACGACAATTCATTCATTCA 57.478 25.926 0.00 0.00 39.12 2.57
1497 3674 9.777843 GTTTGTTAAACGACAATTCATTCATTC 57.222 29.630 0.00 0.00 39.12 2.67
1576 3757 1.608590 GTAGCTTTCACAAGGCAAGCA 59.391 47.619 7.59 0.00 44.57 3.91
1618 3799 1.423541 TCATACACCCTGCACTTTGGT 59.576 47.619 0.00 0.00 0.00 3.67
1656 3837 2.431683 GGAAGCTCTGCCACCACA 59.568 61.111 0.00 0.00 0.00 4.17
1696 3877 0.666274 CGTTCTCAGTGCCGCACTTA 60.666 55.000 23.59 15.01 42.59 2.24
1708 3889 1.081641 GAACTCGTCCGCGTTCTCA 60.082 57.895 13.55 0.00 37.02 3.27
1783 3964 1.731098 GCGAAAACATAGTTTGGGGCG 60.731 52.381 0.00 0.00 0.00 6.13
1839 4020 1.964933 TGTCGTTGTACAGGTCATGGA 59.035 47.619 0.00 0.00 0.00 3.41
1843 4024 3.554129 CCTTGATGTCGTTGTACAGGTCA 60.554 47.826 0.00 0.00 31.70 4.02
1922 4103 1.002257 TGCGGATGAGCATGTTGGT 60.002 52.632 0.00 0.00 42.92 3.67
2081 4262 3.056328 GAGGTTCAAGGCCGGCAC 61.056 66.667 30.85 17.46 0.00 5.01
2104 4285 3.621805 TTCGCCACCTCCGAAGCA 61.622 61.111 0.00 0.00 39.50 3.91
2107 4288 1.292223 CTTCTTCGCCACCTCCGAA 59.708 57.895 0.00 0.00 41.81 4.30
2348 4529 2.971997 GCATGTCGCGATAGGACAA 58.028 52.632 21.70 0.00 45.02 3.18
2455 4636 1.303888 CCACTGCTTGAGGCCATGT 60.304 57.895 5.01 0.00 40.92 3.21
2458 4639 2.113774 CACCACTGCTTGAGGCCA 59.886 61.111 5.01 0.00 40.92 5.36
2460 4641 1.673665 CTCCACCACTGCTTGAGGC 60.674 63.158 0.00 0.00 42.22 4.70
2518 4699 2.391926 TATCTCATGCTCCGGGGTAA 57.608 50.000 1.62 0.00 0.00 2.85
2550 4731 3.245284 GCTAGGCACACATGTAACGTATG 59.755 47.826 0.00 0.00 0.00 2.39
2555 4736 4.113354 GAGTAGCTAGGCACACATGTAAC 58.887 47.826 0.00 0.00 0.00 2.50
2556 4737 3.132289 GGAGTAGCTAGGCACACATGTAA 59.868 47.826 0.00 0.00 0.00 2.41
2557 4738 2.693591 GGAGTAGCTAGGCACACATGTA 59.306 50.000 0.00 0.00 0.00 2.29
2558 4739 1.482593 GGAGTAGCTAGGCACACATGT 59.517 52.381 0.00 0.00 0.00 3.21
2559 4740 1.759445 AGGAGTAGCTAGGCACACATG 59.241 52.381 0.00 0.00 0.00 3.21
2560 4741 2.166907 AGGAGTAGCTAGGCACACAT 57.833 50.000 0.00 0.00 0.00 3.21
2562 4743 2.657143 AGTAGGAGTAGCTAGGCACAC 58.343 52.381 0.00 0.00 0.00 3.82
2594 4817 6.549952 GGGTCAGATACGTCCTATTATAACG 58.450 44.000 0.00 0.00 41.93 3.18
2596 4819 6.475504 TCGGGTCAGATACGTCCTATTATAA 58.524 40.000 0.00 0.00 0.00 0.98
2602 4825 1.202734 CCTCGGGTCAGATACGTCCTA 60.203 57.143 0.00 0.00 0.00 2.94
2722 4979 2.220786 GACGTCCCCCTAGAGGTCCA 62.221 65.000 3.51 0.00 42.89 4.02
2751 5008 3.201290 GCTCCTCACCACATCAATACAG 58.799 50.000 0.00 0.00 0.00 2.74
2778 5035 2.614057 GTGCGCATTGCTAAATCCTAGT 59.386 45.455 15.91 0.00 46.63 2.57
2801 5058 5.798125 CCGTCATGAGGGAGCATATATAT 57.202 43.478 26.94 0.00 38.58 0.86
2836 5093 2.959372 GGTTGCCCGCCTACAAAC 59.041 61.111 0.00 0.00 0.00 2.93
2848 5105 3.359272 GTTAGTTACTAACGCGGTTGC 57.641 47.619 17.86 0.00 37.23 4.17
2856 5113 9.500785 AGATATAGACTCCCGTTAGTTACTAAC 57.499 37.037 21.50 21.50 41.81 2.34
2859 5116 8.879227 ACTAGATATAGACTCCCGTTAGTTACT 58.121 37.037 0.33 0.00 0.00 2.24
2867 5124 7.920227 AGATGTAACTAGATATAGACTCCCGT 58.080 38.462 0.33 0.00 0.00 5.28
2921 5178 3.123804 AGTATGATGCGCCGTAAAAGAG 58.876 45.455 4.18 0.00 0.00 2.85
2929 5186 1.373497 GAGGGAGTATGATGCGCCG 60.373 63.158 4.18 0.00 0.00 6.46
2932 5189 1.688735 TCTTGGAGGGAGTATGATGCG 59.311 52.381 0.00 0.00 0.00 4.73
2954 5211 8.088981 ACGGCTGAGATTATTTAATACTACTGG 58.911 37.037 0.00 0.00 0.00 4.00
2981 5238 7.392113 TGACAAAATTACCCATCTAATCAACGT 59.608 33.333 0.00 0.00 0.00 3.99
2982 5239 7.757526 TGACAAAATTACCCATCTAATCAACG 58.242 34.615 0.00 0.00 0.00 4.10
3097 5354 8.857098 AGTACATAATGGATTGTCGTACAGTAT 58.143 33.333 0.00 0.00 32.20 2.12
3098 5355 8.229253 AGTACATAATGGATTGTCGTACAGTA 57.771 34.615 0.00 0.00 32.20 2.74
3099 5356 7.108841 AGTACATAATGGATTGTCGTACAGT 57.891 36.000 0.00 0.00 32.20 3.55
3100 5357 6.641314 GGAGTACATAATGGATTGTCGTACAG 59.359 42.308 0.00 0.00 32.20 2.74
3101 5358 6.322969 AGGAGTACATAATGGATTGTCGTACA 59.677 38.462 0.00 0.00 32.20 2.90
3102 5359 6.746120 AGGAGTACATAATGGATTGTCGTAC 58.254 40.000 0.00 0.00 0.00 3.67
3103 5360 6.971726 AGGAGTACATAATGGATTGTCGTA 57.028 37.500 0.00 0.00 0.00 3.43
3104 5361 5.871396 AGGAGTACATAATGGATTGTCGT 57.129 39.130 0.00 0.00 0.00 4.34
3106 5363 6.823689 ACACAAGGAGTACATAATGGATTGTC 59.176 38.462 0.00 0.00 0.00 3.18
3108 5365 6.458751 GCACACAAGGAGTACATAATGGATTG 60.459 42.308 0.00 0.00 0.00 2.67
3109 5366 5.590259 GCACACAAGGAGTACATAATGGATT 59.410 40.000 0.00 0.00 0.00 3.01
3110 5367 5.104360 AGCACACAAGGAGTACATAATGGAT 60.104 40.000 0.00 0.00 0.00 3.41
3111 5368 4.225042 AGCACACAAGGAGTACATAATGGA 59.775 41.667 0.00 0.00 0.00 3.41
3112 5369 4.517285 AGCACACAAGGAGTACATAATGG 58.483 43.478 0.00 0.00 0.00 3.16
3113 5370 5.063944 GTGAGCACACAAGGAGTACATAATG 59.936 44.000 9.58 0.00 45.32 1.90
3114 5371 5.178797 GTGAGCACACAAGGAGTACATAAT 58.821 41.667 9.58 0.00 45.32 1.28
3115 5372 4.566004 GTGAGCACACAAGGAGTACATAA 58.434 43.478 9.58 0.00 45.32 1.90
3116 5373 4.188247 GTGAGCACACAAGGAGTACATA 57.812 45.455 9.58 0.00 45.32 2.29
3230 5488 3.767230 CAAGTCGACGGCTGCACG 61.767 66.667 10.46 5.45 40.31 5.34
3234 5492 1.202110 ACGTATACAAGTCGACGGCTG 60.202 52.381 10.46 11.44 39.57 4.85
3272 5530 2.620251 TGAGCAACCAATAGATCCCG 57.380 50.000 0.00 0.00 0.00 5.14
3304 5563 4.989797 AGATCGATCAAGTTCAGATGCATC 59.010 41.667 26.47 19.37 0.00 3.91
3321 5580 3.058155 GCTAGCGTCCTTGATTAGATCGA 60.058 47.826 0.00 0.00 0.00 3.59
3411 5703 0.182537 CCGACCCATTGCCATCCTTA 59.817 55.000 0.00 0.00 0.00 2.69
3412 5704 1.076777 CCGACCCATTGCCATCCTT 60.077 57.895 0.00 0.00 0.00 3.36
3413 5705 2.597340 CCGACCCATTGCCATCCT 59.403 61.111 0.00 0.00 0.00 3.24
3414 5706 2.519302 CCCGACCCATTGCCATCC 60.519 66.667 0.00 0.00 0.00 3.51
3415 5707 1.379843 AACCCGACCCATTGCCATC 60.380 57.895 0.00 0.00 0.00 3.51
3416 5708 1.682005 CAACCCGACCCATTGCCAT 60.682 57.895 0.00 0.00 0.00 4.40
3417 5709 2.282816 CAACCCGACCCATTGCCA 60.283 61.111 0.00 0.00 0.00 4.92
3418 5710 1.605165 TTCAACCCGACCCATTGCC 60.605 57.895 0.00 0.00 0.00 4.52
3419 5711 1.175983 TGTTCAACCCGACCCATTGC 61.176 55.000 0.00 0.00 0.00 3.56
3420 5712 1.000717 GTTGTTCAACCCGACCCATTG 60.001 52.381 4.54 0.00 0.00 2.82
3421 5713 1.324383 GTTGTTCAACCCGACCCATT 58.676 50.000 4.54 0.00 0.00 3.16
3422 5714 0.183971 TGTTGTTCAACCCGACCCAT 59.816 50.000 12.23 0.00 0.00 4.00
3423 5715 0.183971 ATGTTGTTCAACCCGACCCA 59.816 50.000 12.23 0.00 0.00 4.51
3424 5716 0.879090 GATGTTGTTCAACCCGACCC 59.121 55.000 12.23 0.00 0.00 4.46
3425 5717 1.600023 TGATGTTGTTCAACCCGACC 58.400 50.000 12.23 0.12 0.00 4.79
3426 5718 3.701532 TTTGATGTTGTTCAACCCGAC 57.298 42.857 12.23 3.47 35.42 4.79
3427 5719 3.254657 GGATTTGATGTTGTTCAACCCGA 59.745 43.478 12.23 3.09 35.42 5.14
3428 5720 3.005261 TGGATTTGATGTTGTTCAACCCG 59.995 43.478 12.23 0.00 35.42 5.28
3429 5721 4.599047 TGGATTTGATGTTGTTCAACCC 57.401 40.909 12.23 5.81 35.42 4.11
3430 5722 6.980397 GGATATGGATTTGATGTTGTTCAACC 59.020 38.462 12.23 0.29 35.42 3.77
3431 5723 7.546358 TGGATATGGATTTGATGTTGTTCAAC 58.454 34.615 8.52 8.52 35.42 3.18
3432 5724 7.715266 TGGATATGGATTTGATGTTGTTCAA 57.285 32.000 0.00 0.00 33.89 2.69
3433 5725 7.901283 ATGGATATGGATTTGATGTTGTTCA 57.099 32.000 0.00 0.00 0.00 3.18
3435 5727 9.028284 GGATATGGATATGGATTTGATGTTGTT 57.972 33.333 0.00 0.00 0.00 2.83
3436 5728 8.172070 TGGATATGGATATGGATTTGATGTTGT 58.828 33.333 0.00 0.00 0.00 3.32
3437 5729 8.584063 TGGATATGGATATGGATTTGATGTTG 57.416 34.615 0.00 0.00 0.00 3.33
3438 5730 9.197306 CATGGATATGGATATGGATTTGATGTT 57.803 33.333 0.00 0.00 0.00 2.71
3439 5731 8.562635 TCATGGATATGGATATGGATTTGATGT 58.437 33.333 0.00 0.00 34.97 3.06
3440 5732 8.990163 TCATGGATATGGATATGGATTTGATG 57.010 34.615 0.00 0.00 34.97 3.07
3441 5733 9.642343 CTTCATGGATATGGATATGGATTTGAT 57.358 33.333 0.00 0.00 34.97 2.57
3442 5734 8.838741 TCTTCATGGATATGGATATGGATTTGA 58.161 33.333 0.00 0.00 34.97 2.69
3443 5735 8.900781 GTCTTCATGGATATGGATATGGATTTG 58.099 37.037 0.00 0.00 34.97 2.32
3444 5736 8.617491 TGTCTTCATGGATATGGATATGGATTT 58.383 33.333 0.00 0.00 34.97 2.17
3445 5737 8.166479 TGTCTTCATGGATATGGATATGGATT 57.834 34.615 0.00 0.00 34.97 3.01
3446 5738 7.405272 ACTGTCTTCATGGATATGGATATGGAT 59.595 37.037 0.00 0.00 34.97 3.41
3447 5739 6.732390 ACTGTCTTCATGGATATGGATATGGA 59.268 38.462 0.00 0.00 34.97 3.41
3448 5740 6.955364 ACTGTCTTCATGGATATGGATATGG 58.045 40.000 0.00 0.00 34.97 2.74
3449 5741 7.849160 AGACTGTCTTCATGGATATGGATATG 58.151 38.462 4.06 0.00 34.97 1.78
3450 5742 8.446714 AAGACTGTCTTCATGGATATGGATAT 57.553 34.615 17.00 0.00 28.99 1.63
3451 5743 7.862274 AAGACTGTCTTCATGGATATGGATA 57.138 36.000 17.00 0.00 28.99 2.59
3452 5744 6.760440 AAGACTGTCTTCATGGATATGGAT 57.240 37.500 17.00 0.00 28.99 3.41
3453 5745 6.351711 CAAAGACTGTCTTCATGGATATGGA 58.648 40.000 22.24 0.00 35.27 3.41
3454 5746 5.008415 GCAAAGACTGTCTTCATGGATATGG 59.992 44.000 22.24 0.00 35.27 2.74
3455 5747 5.008415 GGCAAAGACTGTCTTCATGGATATG 59.992 44.000 22.24 14.91 35.27 1.78
3456 5748 5.128919 GGCAAAGACTGTCTTCATGGATAT 58.871 41.667 22.24 2.60 35.27 1.63
3457 5749 4.517285 GGCAAAGACTGTCTTCATGGATA 58.483 43.478 22.24 0.00 35.27 2.59
3458 5750 3.350833 GGCAAAGACTGTCTTCATGGAT 58.649 45.455 22.24 4.04 35.27 3.41
3459 5751 2.553028 GGGCAAAGACTGTCTTCATGGA 60.553 50.000 22.24 0.00 35.27 3.41
3460 5752 1.815003 GGGCAAAGACTGTCTTCATGG 59.185 52.381 22.24 13.41 35.27 3.66
3461 5753 1.466167 CGGGCAAAGACTGTCTTCATG 59.534 52.381 22.24 18.12 35.27 3.07
3462 5754 1.813513 CGGGCAAAGACTGTCTTCAT 58.186 50.000 22.24 6.23 35.27 2.57
3463 5755 0.884704 GCGGGCAAAGACTGTCTTCA 60.885 55.000 22.24 0.00 35.27 3.02
3464 5756 1.578206 GGCGGGCAAAGACTGTCTTC 61.578 60.000 22.24 11.43 35.27 2.87
3465 5757 1.600916 GGCGGGCAAAGACTGTCTT 60.601 57.895 17.00 17.00 38.59 3.01
3466 5758 2.032681 GGCGGGCAAAGACTGTCT 59.967 61.111 4.06 4.06 0.00 3.41
3467 5759 3.056328 GGGCGGGCAAAGACTGTC 61.056 66.667 3.27 0.00 0.00 3.51
3468 5760 3.210012 ATGGGCGGGCAAAGACTGT 62.210 57.895 3.27 0.00 0.00 3.55
3469 5761 2.361610 ATGGGCGGGCAAAGACTG 60.362 61.111 3.27 0.00 0.00 3.51
3470 5762 2.361610 CATGGGCGGGCAAAGACT 60.362 61.111 3.27 0.00 0.00 3.24
3471 5763 1.531739 TTTCATGGGCGGGCAAAGAC 61.532 55.000 3.27 0.00 0.00 3.01
3472 5764 0.829602 TTTTCATGGGCGGGCAAAGA 60.830 50.000 3.27 0.00 0.00 2.52
3473 5765 0.034616 TTTTTCATGGGCGGGCAAAG 59.965 50.000 3.27 0.00 0.00 2.77
3474 5766 2.136791 TTTTTCATGGGCGGGCAAA 58.863 47.368 3.27 0.00 0.00 3.68
3475 5767 3.876873 TTTTTCATGGGCGGGCAA 58.123 50.000 3.27 0.00 0.00 4.52
3489 5781 7.220740 ACATAATTTTTCACCCGTGGATTTTT 58.779 30.769 0.00 0.00 0.00 1.94
3490 5782 6.764379 ACATAATTTTTCACCCGTGGATTTT 58.236 32.000 0.00 0.00 0.00 1.82
3491 5783 6.353404 ACATAATTTTTCACCCGTGGATTT 57.647 33.333 0.00 0.00 0.00 2.17
3492 5784 5.105513 GGACATAATTTTTCACCCGTGGATT 60.106 40.000 0.00 0.00 0.00 3.01
3493 5785 4.401202 GGACATAATTTTTCACCCGTGGAT 59.599 41.667 0.00 0.00 0.00 3.41
3494 5786 3.759618 GGACATAATTTTTCACCCGTGGA 59.240 43.478 0.00 0.00 0.00 4.02
3495 5787 3.508012 TGGACATAATTTTTCACCCGTGG 59.492 43.478 0.00 0.00 0.00 4.94
3496 5788 4.775058 TGGACATAATTTTTCACCCGTG 57.225 40.909 0.00 0.00 0.00 4.94
3497 5789 4.770010 ACATGGACATAATTTTTCACCCGT 59.230 37.500 0.00 0.00 0.00 5.28
3498 5790 5.323371 ACATGGACATAATTTTTCACCCG 57.677 39.130 0.00 0.00 0.00 5.28
3499 5791 5.186797 TGGACATGGACATAATTTTTCACCC 59.813 40.000 0.00 0.00 0.00 4.61
3500 5792 6.279513 TGGACATGGACATAATTTTTCACC 57.720 37.500 0.00 0.00 0.00 4.02
3501 5793 7.117667 GGTTTGGACATGGACATAATTTTTCAC 59.882 37.037 0.00 0.00 0.00 3.18
3502 5794 7.016072 AGGTTTGGACATGGACATAATTTTTCA 59.984 33.333 0.00 0.00 0.00 2.69
3503 5795 7.331687 CAGGTTTGGACATGGACATAATTTTTC 59.668 37.037 0.00 0.00 34.08 2.29
3504 5796 7.016072 TCAGGTTTGGACATGGACATAATTTTT 59.984 33.333 0.00 0.00 38.09 1.94
3505 5797 6.496565 TCAGGTTTGGACATGGACATAATTTT 59.503 34.615 0.00 0.00 38.09 1.82
3506 5798 6.015918 TCAGGTTTGGACATGGACATAATTT 58.984 36.000 0.00 0.00 38.09 1.82
3507 5799 5.579047 TCAGGTTTGGACATGGACATAATT 58.421 37.500 0.00 0.00 38.09 1.40
3508 5800 5.191727 TCAGGTTTGGACATGGACATAAT 57.808 39.130 0.00 0.00 38.09 1.28
3509 5801 4.649267 TCAGGTTTGGACATGGACATAA 57.351 40.909 0.00 0.00 38.09 1.90
3510 5802 4.525996 CATCAGGTTTGGACATGGACATA 58.474 43.478 0.00 0.00 38.09 2.29
3511 5803 3.359033 CATCAGGTTTGGACATGGACAT 58.641 45.455 0.00 0.00 38.09 3.06
3512 5804 2.555006 CCATCAGGTTTGGACATGGACA 60.555 50.000 0.00 0.00 38.09 4.02
3513 5805 2.094675 CCATCAGGTTTGGACATGGAC 58.905 52.381 0.00 0.00 38.09 4.02
3514 5806 2.512692 CCATCAGGTTTGGACATGGA 57.487 50.000 0.00 0.00 38.09 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.