Multiple sequence alignment - TraesCS6D01G348100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G348100 chr6D 100.000 2415 0 0 1 2415 446460848 446463262 0.000000e+00 4460.0
1 TraesCS6D01G348100 chr6D 76.429 420 59 25 1281 1688 446477439 446477830 8.810000e-45 191.0
2 TraesCS6D01G348100 chr6D 81.203 133 11 7 2289 2408 446478036 446478167 7.110000e-16 95.3
3 TraesCS6D01G348100 chr6A 88.184 2082 130 48 409 2415 593232325 593234365 0.000000e+00 2375.0
4 TraesCS6D01G348100 chr6A 87.129 202 26 0 1236 1437 593235609 593235810 1.870000e-56 230.0
5 TraesCS6D01G348100 chr6A 75.406 431 73 21 1281 1699 593284831 593285240 6.860000e-41 178.0
6 TraesCS6D01G348100 chr6A 86.709 158 7 5 134 291 593231565 593231708 1.920000e-36 163.0
7 TraesCS6D01G348100 chr6A 93.976 83 5 0 2326 2408 593283445 593283527 2.520000e-25 126.0
8 TraesCS6D01G348100 chr6A 91.429 70 4 1 2054 2123 593234455 593234522 7.110000e-16 95.3
9 TraesCS6D01G348100 chr6A 80.000 140 15 7 2289 2415 593285427 593285566 9.190000e-15 91.6
10 TraesCS6D01G348100 chr6A 97.778 45 0 1 283 326 593232263 593232307 2.570000e-10 76.8
11 TraesCS6D01G348100 chr6B 90.175 1710 98 29 154 1840 674839468 674841130 0.000000e+00 2163.0
12 TraesCS6D01G348100 chr6B 82.574 373 45 13 2051 2415 674841212 674841572 6.480000e-81 311.0
13 TraesCS6D01G348100 chr6B 95.238 84 3 1 2326 2409 674926443 674926525 5.420000e-27 132.0
14 TraesCS6D01G348100 chr5D 90.345 145 12 2 2 145 350759339 350759196 3.170000e-44 189.0
15 TraesCS6D01G348100 chr5D 87.838 148 16 2 1 146 394834411 394834264 3.190000e-39 172.0
16 TraesCS6D01G348100 chr5D 87.943 141 16 1 1 140 489771966 489771826 5.340000e-37 165.0
17 TraesCS6D01G348100 chr4D 88.732 142 16 0 1 142 8133266 8133125 8.880000e-40 174.0
18 TraesCS6D01G348100 chr5B 88.194 144 16 1 1 143 528522123 528522266 1.150000e-38 171.0
19 TraesCS6D01G348100 chr5B 88.571 140 15 1 1 139 590241280 590241141 4.130000e-38 169.0
20 TraesCS6D01G348100 chr2D 87.500 144 17 1 1 143 585465322 585465179 5.340000e-37 165.0
21 TraesCS6D01G348100 chr1D 87.413 143 16 2 1 142 309583547 309583688 1.920000e-36 163.0
22 TraesCS6D01G348100 chr3D 86.897 145 15 4 1 143 406138098 406138240 2.490000e-35 159.0
23 TraesCS6D01G348100 chrUn 94.565 92 3 1 2326 2415 79272551 79272642 9.000000e-30 141.0
24 TraesCS6D01G348100 chrUn 94.565 92 3 1 2326 2415 79304215 79304306 9.000000e-30 141.0
25 TraesCS6D01G348100 chrUn 94.565 92 3 1 2326 2415 479190391 479190482 9.000000e-30 141.0
26 TraesCS6D01G348100 chrUn 95.238 84 3 1 2326 2409 79245657 79245739 5.420000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G348100 chr6D 446460848 446463262 2414 False 4460.00 4460 100.0000 1 2415 1 chr6D.!!$F1 2414
1 TraesCS6D01G348100 chr6A 593231565 593235810 4245 False 588.02 2375 90.2458 134 2415 5 chr6A.!!$F1 2281
2 TraesCS6D01G348100 chr6B 674839468 674841572 2104 False 1237.00 2163 86.3745 154 2415 2 chr6B.!!$F2 2261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.037605 CTAGGCGTTTGAGACCCGTT 60.038 55.0 0.00 0.0 0.00 4.44 F
83 84 0.038526 AACACGACCGATCAGTGACC 60.039 55.0 8.45 0.0 39.04 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1922 1.025113 ACATCGACGCTCCTCTTCGA 61.025 55.000 0.0 0.0 46.97 3.71 R
1808 2439 1.282875 GCGTCAACAAACTGGCTCC 59.717 57.895 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.340064 ATATGAGGGGTGCCAGTCA 57.660 52.632 0.00 0.00 0.00 3.41
19 20 1.135094 ATATGAGGGGTGCCAGTCAG 58.865 55.000 0.00 0.00 0.00 3.51
20 21 1.626356 TATGAGGGGTGCCAGTCAGC 61.626 60.000 0.00 0.00 42.24 4.26
25 26 2.586792 GGTGCCAGTCAGCCTAGG 59.413 66.667 3.67 3.67 37.22 3.02
36 37 4.203618 GCCTAGGCGTTTGAGACC 57.796 61.111 20.16 0.00 0.00 3.85
37 38 1.449778 GCCTAGGCGTTTGAGACCC 60.450 63.158 20.16 0.00 0.00 4.46
38 39 1.153628 CCTAGGCGTTTGAGACCCG 60.154 63.158 0.00 0.00 0.00 5.28
39 40 1.590147 CTAGGCGTTTGAGACCCGT 59.410 57.895 0.00 0.00 0.00 5.28
40 41 0.037605 CTAGGCGTTTGAGACCCGTT 60.038 55.000 0.00 0.00 0.00 4.44
41 42 0.393820 TAGGCGTTTGAGACCCGTTT 59.606 50.000 0.00 0.00 0.00 3.60
42 43 1.164041 AGGCGTTTGAGACCCGTTTG 61.164 55.000 0.00 0.00 0.00 2.93
43 44 1.161563 GGCGTTTGAGACCCGTTTGA 61.162 55.000 0.00 0.00 0.00 2.69
44 45 0.234884 GCGTTTGAGACCCGTTTGAG 59.765 55.000 0.00 0.00 0.00 3.02
45 46 0.865769 CGTTTGAGACCCGTTTGAGG 59.134 55.000 0.00 0.00 0.00 3.86
46 47 0.591659 GTTTGAGACCCGTTTGAGGC 59.408 55.000 0.00 0.00 0.00 4.70
47 48 0.882927 TTTGAGACCCGTTTGAGGCG 60.883 55.000 0.00 0.00 0.00 5.52
48 49 2.035237 TTGAGACCCGTTTGAGGCGT 62.035 55.000 0.00 0.00 0.00 5.68
49 50 1.737008 GAGACCCGTTTGAGGCGTC 60.737 63.158 0.00 0.00 34.09 5.19
50 51 2.741211 GACCCGTTTGAGGCGTCC 60.741 66.667 3.56 0.00 0.00 4.79
51 52 4.675029 ACCCGTTTGAGGCGTCCG 62.675 66.667 3.56 0.26 0.00 4.79
52 53 4.675029 CCCGTTTGAGGCGTCCGT 62.675 66.667 3.56 0.00 0.00 4.69
53 54 3.110178 CCGTTTGAGGCGTCCGTC 61.110 66.667 3.56 0.00 0.00 4.79
54 55 2.049433 CGTTTGAGGCGTCCGTCT 60.049 61.111 3.56 0.00 0.00 4.18
55 56 2.372690 CGTTTGAGGCGTCCGTCTG 61.373 63.158 0.00 0.00 0.00 3.51
56 57 2.027625 GTTTGAGGCGTCCGTCTGG 61.028 63.158 0.00 0.00 0.00 3.86
57 58 2.204461 TTTGAGGCGTCCGTCTGGA 61.204 57.895 0.00 0.00 43.88 3.86
81 82 2.519377 AAAACACGACCGATCAGTGA 57.481 45.000 8.45 0.00 39.04 3.41
82 83 1.779569 AAACACGACCGATCAGTGAC 58.220 50.000 8.45 0.00 39.04 3.67
83 84 0.038526 AACACGACCGATCAGTGACC 60.039 55.000 8.45 0.00 39.04 4.02
84 85 1.514228 CACGACCGATCAGTGACCG 60.514 63.158 0.00 0.00 38.06 4.79
86 87 2.494918 GACCGATCAGTGACCGGG 59.505 66.667 29.42 16.32 46.83 5.73
87 88 3.718210 GACCGATCAGTGACCGGGC 62.718 68.421 29.42 24.57 46.83 6.13
88 89 4.873129 CCGATCAGTGACCGGGCG 62.873 72.222 19.04 6.16 39.59 6.13
89 90 4.873129 CGATCAGTGACCGGGCGG 62.873 72.222 6.32 0.00 42.03 6.13
107 108 4.280494 CCCGCCCGGACGTATGAG 62.280 72.222 9.94 0.00 37.50 2.90
108 109 4.280494 CCGCCCGGACGTATGAGG 62.280 72.222 9.94 0.00 37.50 3.86
109 110 4.944372 CGCCCGGACGTATGAGGC 62.944 72.222 0.73 8.01 40.33 4.70
110 111 4.944372 GCCCGGACGTATGAGGCG 62.944 72.222 0.73 0.00 33.18 5.52
111 112 4.280494 CCCGGACGTATGAGGCGG 62.280 72.222 0.73 0.00 0.00 6.13
112 113 4.280494 CCGGACGTATGAGGCGGG 62.280 72.222 0.00 0.00 0.00 6.13
113 114 3.524606 CGGACGTATGAGGCGGGT 61.525 66.667 0.00 0.00 0.00 5.28
114 115 2.897972 GGACGTATGAGGCGGGTT 59.102 61.111 0.00 0.00 0.00 4.11
115 116 1.219935 GGACGTATGAGGCGGGTTT 59.780 57.895 0.00 0.00 0.00 3.27
116 117 1.087771 GGACGTATGAGGCGGGTTTG 61.088 60.000 0.00 0.00 0.00 2.93
117 118 0.108520 GACGTATGAGGCGGGTTTGA 60.109 55.000 0.00 0.00 0.00 2.69
118 119 0.108329 ACGTATGAGGCGGGTTTGAG 60.108 55.000 0.00 0.00 0.00 3.02
119 120 0.810031 CGTATGAGGCGGGTTTGAGG 60.810 60.000 0.00 0.00 0.00 3.86
120 121 1.095807 GTATGAGGCGGGTTTGAGGC 61.096 60.000 0.00 0.00 0.00 4.70
121 122 2.587322 TATGAGGCGGGTTTGAGGCG 62.587 60.000 0.00 0.00 38.03 5.52
142 143 2.233922 GCCCGGCTATAGATGCTCTTAA 59.766 50.000 3.21 0.00 0.00 1.85
143 144 3.851098 CCCGGCTATAGATGCTCTTAAC 58.149 50.000 3.21 0.00 0.00 2.01
144 145 3.502920 CCGGCTATAGATGCTCTTAACG 58.497 50.000 3.21 0.00 0.00 3.18
145 146 3.057456 CCGGCTATAGATGCTCTTAACGT 60.057 47.826 3.21 0.00 0.00 3.99
147 148 4.238514 GGCTATAGATGCTCTTAACGTGG 58.761 47.826 3.21 0.00 0.00 4.94
148 149 4.262079 GGCTATAGATGCTCTTAACGTGGT 60.262 45.833 3.21 0.00 0.00 4.16
149 150 5.048224 GGCTATAGATGCTCTTAACGTGGTA 60.048 44.000 3.21 0.00 0.00 3.25
194 195 6.674694 TTGTGGTACGTAGTTTTTGCTTTA 57.325 33.333 0.00 0.00 37.78 1.85
200 201 9.139174 TGGTACGTAGTTTTTGCTTTATAGTAC 57.861 33.333 0.00 0.00 37.78 2.73
217 218 2.091775 AGTACTCCGCTAGGTCCAGATT 60.092 50.000 0.00 0.00 39.05 2.40
218 219 1.115467 ACTCCGCTAGGTCCAGATTG 58.885 55.000 0.00 0.00 39.05 2.67
232 233 0.693049 AGATTGACACACCCCCACTC 59.307 55.000 0.00 0.00 0.00 3.51
234 235 0.693049 ATTGACACACCCCCACTCTC 59.307 55.000 0.00 0.00 0.00 3.20
235 236 1.415672 TTGACACACCCCCACTCTCC 61.416 60.000 0.00 0.00 0.00 3.71
236 237 1.841556 GACACACCCCCACTCTCCA 60.842 63.158 0.00 0.00 0.00 3.86
237 238 1.151810 ACACACCCCCACTCTCCAT 60.152 57.895 0.00 0.00 0.00 3.41
238 239 1.201429 ACACACCCCCACTCTCCATC 61.201 60.000 0.00 0.00 0.00 3.51
239 240 1.990060 ACACCCCCACTCTCCATCG 60.990 63.158 0.00 0.00 0.00 3.84
240 241 3.083997 ACCCCCACTCTCCATCGC 61.084 66.667 0.00 0.00 0.00 4.58
241 242 2.765807 CCCCCACTCTCCATCGCT 60.766 66.667 0.00 0.00 0.00 4.93
242 243 2.370445 CCCCCACTCTCCATCGCTT 61.370 63.158 0.00 0.00 0.00 4.68
243 244 1.604378 CCCCACTCTCCATCGCTTT 59.396 57.895 0.00 0.00 0.00 3.51
330 894 4.157120 CCAGTCCCCGGCCGTAAG 62.157 72.222 26.12 12.36 0.00 2.34
331 895 3.387947 CAGTCCCCGGCCGTAAGT 61.388 66.667 26.12 8.83 0.00 2.24
332 896 2.053865 CAGTCCCCGGCCGTAAGTA 61.054 63.158 26.12 1.11 0.00 2.24
412 978 1.906757 GTAGAGACGAGTCGAGACGA 58.093 55.000 21.50 3.14 36.20 4.20
413 979 1.847999 GTAGAGACGAGTCGAGACGAG 59.152 57.143 21.50 0.00 36.23 4.18
545 1111 1.019673 CGGTGGCTCCATTTGATCAG 58.980 55.000 6.39 0.00 35.57 2.90
546 1112 1.396653 GGTGGCTCCATTTGATCAGG 58.603 55.000 0.00 0.00 35.97 3.86
547 1113 1.064463 GGTGGCTCCATTTGATCAGGA 60.064 52.381 0.00 0.00 35.97 3.86
548 1114 2.621407 GGTGGCTCCATTTGATCAGGAA 60.621 50.000 0.00 0.00 35.97 3.36
549 1115 2.686915 GTGGCTCCATTTGATCAGGAAG 59.313 50.000 3.95 0.81 0.00 3.46
561 1159 2.268796 TCAGGAAGGGACCATCATCA 57.731 50.000 0.00 0.00 0.00 3.07
707 1306 2.262915 GACAGCGACCCCACAGAG 59.737 66.667 0.00 0.00 0.00 3.35
728 1327 4.314121 AGAGAGACATTGTCAAAGCAGAC 58.686 43.478 18.57 0.00 38.99 3.51
733 1332 5.137970 GACATTGTCAAAGCAGACGCAGT 62.138 47.826 11.93 0.00 41.41 4.40
775 1375 8.069574 GGAATTTTAAAATTTGCAAGTCCTGTG 58.930 33.333 23.44 0.00 38.64 3.66
782 1382 3.334583 TTGCAAGTCCTGTGGATAGAC 57.665 47.619 0.00 0.00 32.73 2.59
847 1447 1.017701 GGGACGGGTCGTAAAGCAAG 61.018 60.000 0.00 0.00 41.37 4.01
958 1565 0.175302 ACTTCCATCTGAGCTGAGCG 59.825 55.000 0.00 0.00 0.00 5.03
1024 1641 3.576004 GCTCCAGCTGCTTGTCAG 58.424 61.111 8.66 0.00 45.62 3.51
1032 1649 2.203337 TGCTTGTCAGTGGGTGCC 60.203 61.111 0.00 0.00 0.00 5.01
1065 1682 1.476845 TTCTGGTACTGGCTTCGGCA 61.477 55.000 0.00 0.00 43.96 5.69
1113 1730 4.436998 GAGACCCGGGCGTCAGTG 62.437 72.222 24.08 0.00 35.07 3.66
1120 1737 4.687215 GGGCGTCAGTGAGCAGCA 62.687 66.667 14.58 0.00 34.54 4.41
1135 1752 1.902918 AGCAGCGGCAACCAAATGA 60.903 52.632 12.44 0.00 44.61 2.57
1137 1754 1.959085 CAGCGGCAACCAAATGACT 59.041 52.632 1.45 0.00 0.00 3.41
1138 1755 0.387622 CAGCGGCAACCAAATGACTG 60.388 55.000 1.45 0.00 0.00 3.51
1140 1757 4.994744 GGCAACCAAATGACTGCC 57.005 55.556 9.13 9.13 46.95 4.85
1151 1768 3.334583 AATGACTGCCGATGTAAGTGT 57.665 42.857 0.00 0.00 0.00 3.55
1153 1770 3.945981 TGACTGCCGATGTAAGTGTTA 57.054 42.857 0.00 0.00 0.00 2.41
1155 1772 2.597305 GACTGCCGATGTAAGTGTTACG 59.403 50.000 0.00 0.00 38.98 3.18
1156 1773 2.229543 ACTGCCGATGTAAGTGTTACGA 59.770 45.455 0.00 0.00 38.98 3.43
1157 1774 3.247442 CTGCCGATGTAAGTGTTACGAA 58.753 45.455 0.00 0.00 38.98 3.85
1162 1779 5.006358 GCCGATGTAAGTGTTACGAATGAAT 59.994 40.000 0.00 0.00 38.98 2.57
1165 1782 7.634817 CCGATGTAAGTGTTACGAATGAATTTC 59.365 37.037 0.00 0.00 38.98 2.17
1178 1795 6.207417 ACGAATGAATTTCTCATCACCTGTTT 59.793 34.615 0.00 0.00 44.43 2.83
1179 1796 7.390440 ACGAATGAATTTCTCATCACCTGTTTA 59.610 33.333 0.00 0.00 44.43 2.01
1255 1876 2.380064 TGCAGAAACCAACTGGGAAT 57.620 45.000 0.00 0.00 41.15 3.01
1286 1907 1.055849 TGTGGTCAAGGCTTCTGCTA 58.944 50.000 0.00 0.00 39.59 3.49
1315 1936 1.061253 CGAGTCGAAGAGGAGCGTC 59.939 63.158 6.73 0.00 36.95 5.19
1433 2054 6.111382 CACTGATGGAGCAAATTCTTCTCTA 58.889 40.000 0.00 0.00 0.00 2.43
1629 2260 1.136141 CAAGCAAGACGTGTGAGATGC 60.136 52.381 0.00 0.00 0.00 3.91
1640 2271 1.550524 TGTGAGATGCTGTGTACCTCC 59.449 52.381 0.00 0.00 0.00 4.30
1808 2439 4.458295 AGATTTTCAGCAACCTGATGACAG 59.542 41.667 0.00 0.00 43.03 3.51
1825 2456 0.588252 CAGGAGCCAGTTTGTTGACG 59.412 55.000 0.00 0.00 0.00 4.35
1826 2457 1.166531 AGGAGCCAGTTTGTTGACGC 61.167 55.000 0.00 0.00 0.00 5.19
1827 2458 1.444119 GGAGCCAGTTTGTTGACGCA 61.444 55.000 0.00 0.00 0.00 5.24
1856 2487 9.035607 AGTGCGAAAGACAACTCTAATTATATG 57.964 33.333 0.00 0.00 0.00 1.78
1857 2488 8.276325 GTGCGAAAGACAACTCTAATTATATGG 58.724 37.037 0.00 0.00 0.00 2.74
1899 2536 9.090692 CTCTGCAATAATTTATTGAGGGTTTTG 57.909 33.333 26.06 5.17 46.52 2.44
1901 2538 9.868277 CTGCAATAATTTATTGAGGGTTTTGTA 57.132 29.630 26.06 3.27 46.52 2.41
1908 2547 4.929819 ATTGAGGGTTTTGTACACCAAC 57.070 40.909 0.00 1.54 35.80 3.77
1942 2584 0.811281 GGGCTTTCAACATCCTTCCG 59.189 55.000 0.00 0.00 0.00 4.30
1982 2624 9.838339 ATAACTACTCCCTTTGTCTCATAATTG 57.162 33.333 0.00 0.00 0.00 2.32
2036 2678 6.645415 CAGAAAACGTCTTACATTGTAGGACT 59.355 38.462 26.75 14.58 32.70 3.85
2037 2679 7.170998 CAGAAAACGTCTTACATTGTAGGACTT 59.829 37.037 26.75 19.49 32.70 3.01
2038 2680 6.780706 AAACGTCTTACATTGTAGGACTTG 57.219 37.500 26.75 18.57 0.00 3.16
2039 2681 5.717078 ACGTCTTACATTGTAGGACTTGA 57.283 39.130 26.75 7.27 0.00 3.02
2044 2686 6.814146 GTCTTACATTGTAGGACTTGAGGAAG 59.186 42.308 24.21 6.54 35.07 3.46
2049 2691 5.723672 TTGTAGGACTTGAGGAAGTACAG 57.276 43.478 0.00 0.00 44.68 2.74
2130 2777 8.744652 TCCTGTTTTCTCTGAAGAGTATTAGAG 58.255 37.037 7.20 0.00 42.60 2.43
2131 2778 7.491048 CCTGTTTTCTCTGAAGAGTATTAGAGC 59.509 40.741 7.20 0.00 42.60 4.09
2132 2779 7.030165 TGTTTTCTCTGAAGAGTATTAGAGCG 58.970 38.462 7.20 0.00 42.60 5.03
2133 2780 7.094334 TGTTTTCTCTGAAGAGTATTAGAGCGA 60.094 37.037 7.20 0.00 42.60 4.93
2134 2781 6.612247 TTCTCTGAAGAGTATTAGAGCGAG 57.388 41.667 7.20 0.00 42.60 5.03
2135 2782 5.919755 TCTCTGAAGAGTATTAGAGCGAGA 58.080 41.667 7.20 0.00 42.60 4.04
2136 2783 6.350103 TCTCTGAAGAGTATTAGAGCGAGAA 58.650 40.000 7.20 0.00 42.60 2.87
2137 2784 6.995686 TCTCTGAAGAGTATTAGAGCGAGAAT 59.004 38.462 7.20 0.00 42.60 2.40
2138 2785 7.500892 TCTCTGAAGAGTATTAGAGCGAGAATT 59.499 37.037 7.20 0.00 42.60 2.17
2139 2786 8.001881 TCTGAAGAGTATTAGAGCGAGAATTT 57.998 34.615 0.00 0.00 0.00 1.82
2140 2787 8.470805 TCTGAAGAGTATTAGAGCGAGAATTTT 58.529 33.333 0.00 0.00 0.00 1.82
2141 2788 9.092876 CTGAAGAGTATTAGAGCGAGAATTTTT 57.907 33.333 0.00 0.00 0.00 1.94
2194 2873 2.496070 TCCATGTACCAGTGAGCACTAC 59.504 50.000 2.36 0.00 40.20 2.73
2266 2945 1.566211 CCATGCATACCAACCCCAAA 58.434 50.000 0.00 0.00 0.00 3.28
2282 2961 0.040067 CAAAGAGTGGAAGCGTTGCC 60.040 55.000 0.00 0.00 0.00 4.52
2283 2962 1.507141 AAAGAGTGGAAGCGTTGCCG 61.507 55.000 0.00 0.00 37.07 5.69
2284 2963 3.423154 GAGTGGAAGCGTTGCCGG 61.423 66.667 0.00 0.00 33.68 6.13
2285 2964 3.876589 GAGTGGAAGCGTTGCCGGA 62.877 63.158 5.05 0.00 33.68 5.14
2286 2965 2.746277 GTGGAAGCGTTGCCGGAT 60.746 61.111 5.05 0.00 33.68 4.18
2287 2966 2.745884 TGGAAGCGTTGCCGGATG 60.746 61.111 5.05 0.00 33.68 3.51
2387 3067 4.418392 AGCTACGTACAACCACTATTTCG 58.582 43.478 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.135094 CTGACTGGCACCCCTCATAT 58.865 55.000 0.00 0.00 0.00 1.78
1 2 1.626356 GCTGACTGGCACCCCTCATA 61.626 60.000 0.00 0.00 0.00 2.15
2 3 2.976490 GCTGACTGGCACCCCTCAT 61.976 63.158 0.00 0.00 0.00 2.90
3 4 3.640407 GCTGACTGGCACCCCTCA 61.640 66.667 0.00 0.00 0.00 3.86
4 5 4.416738 GGCTGACTGGCACCCCTC 62.417 72.222 0.72 0.00 41.37 4.30
5 6 3.562681 TAGGCTGACTGGCACCCCT 62.563 63.158 8.60 3.68 44.55 4.79
6 7 3.009115 TAGGCTGACTGGCACCCC 61.009 66.667 8.60 0.00 44.55 4.95
7 8 2.586792 CTAGGCTGACTGGCACCC 59.413 66.667 8.60 0.00 44.55 4.61
8 9 2.586792 CCTAGGCTGACTGGCACC 59.413 66.667 8.60 0.00 44.55 5.01
9 10 2.124942 GCCTAGGCTGACTGGCAC 60.125 66.667 27.17 0.00 44.55 5.01
10 11 3.774528 CGCCTAGGCTGACTGGCA 61.775 66.667 30.55 0.00 44.55 4.92
11 12 2.804828 AAACGCCTAGGCTGACTGGC 62.805 60.000 30.55 12.31 38.92 4.85
12 13 1.021390 CAAACGCCTAGGCTGACTGG 61.021 60.000 30.55 16.59 39.32 4.00
13 14 0.037326 TCAAACGCCTAGGCTGACTG 60.037 55.000 30.55 20.67 39.32 3.51
14 15 0.247736 CTCAAACGCCTAGGCTGACT 59.752 55.000 30.55 10.23 39.32 3.41
15 16 0.246635 TCTCAAACGCCTAGGCTGAC 59.753 55.000 30.55 2.92 39.32 3.51
16 17 0.246635 GTCTCAAACGCCTAGGCTGA 59.753 55.000 30.55 24.64 39.32 4.26
17 18 0.741221 GGTCTCAAACGCCTAGGCTG 60.741 60.000 30.55 24.54 39.32 4.85
18 19 1.597461 GGTCTCAAACGCCTAGGCT 59.403 57.895 30.55 15.41 39.32 4.58
19 20 1.449778 GGGTCTCAAACGCCTAGGC 60.450 63.158 24.75 24.75 34.85 3.93
20 21 1.153628 CGGGTCTCAAACGCCTAGG 60.154 63.158 3.67 3.67 37.53 3.02
21 22 0.037605 AACGGGTCTCAAACGCCTAG 60.038 55.000 0.00 0.00 37.53 3.02
22 23 0.393820 AAACGGGTCTCAAACGCCTA 59.606 50.000 0.00 0.00 37.53 3.93
23 24 1.147600 AAACGGGTCTCAAACGCCT 59.852 52.632 0.00 0.00 37.53 5.52
24 25 1.161563 TCAAACGGGTCTCAAACGCC 61.162 55.000 0.00 0.00 37.53 5.68
25 26 0.234884 CTCAAACGGGTCTCAAACGC 59.765 55.000 0.00 0.00 37.46 4.84
26 27 0.865769 CCTCAAACGGGTCTCAAACG 59.134 55.000 0.00 0.00 0.00 3.60
27 28 0.591659 GCCTCAAACGGGTCTCAAAC 59.408 55.000 0.00 0.00 0.00 2.93
28 29 0.882927 CGCCTCAAACGGGTCTCAAA 60.883 55.000 0.00 0.00 0.00 2.69
29 30 1.301401 CGCCTCAAACGGGTCTCAA 60.301 57.895 0.00 0.00 0.00 3.02
30 31 2.342279 CGCCTCAAACGGGTCTCA 59.658 61.111 0.00 0.00 0.00 3.27
31 32 1.737008 GACGCCTCAAACGGGTCTC 60.737 63.158 0.00 0.00 39.41 3.36
32 33 2.342648 GACGCCTCAAACGGGTCT 59.657 61.111 0.00 0.00 39.41 3.85
33 34 2.741211 GGACGCCTCAAACGGGTC 60.741 66.667 0.00 0.00 41.19 4.46
34 35 4.675029 CGGACGCCTCAAACGGGT 62.675 66.667 0.00 0.00 34.00 5.28
35 36 4.675029 ACGGACGCCTCAAACGGG 62.675 66.667 0.00 0.00 34.00 5.28
36 37 3.110178 GACGGACGCCTCAAACGG 61.110 66.667 0.00 0.00 34.00 4.44
37 38 2.049433 AGACGGACGCCTCAAACG 60.049 61.111 0.00 0.00 0.00 3.60
38 39 2.027625 CCAGACGGACGCCTCAAAC 61.028 63.158 0.00 0.00 0.00 2.93
39 40 1.541310 ATCCAGACGGACGCCTCAAA 61.541 55.000 0.00 0.00 46.79 2.69
40 41 1.982395 ATCCAGACGGACGCCTCAA 60.982 57.895 0.00 0.00 46.79 3.02
41 42 2.362503 ATCCAGACGGACGCCTCA 60.363 61.111 0.00 0.00 46.79 3.86
42 43 1.945354 TTCATCCAGACGGACGCCTC 61.945 60.000 0.00 0.00 46.79 4.70
43 44 1.541310 TTTCATCCAGACGGACGCCT 61.541 55.000 0.00 0.00 46.79 5.52
44 45 0.672401 TTTTCATCCAGACGGACGCC 60.672 55.000 0.00 0.00 46.79 5.68
45 46 1.153353 TTTTTCATCCAGACGGACGC 58.847 50.000 0.00 0.00 46.79 5.19
61 62 2.542595 GTCACTGATCGGTCGTGTTTTT 59.457 45.455 16.43 0.00 33.56 1.94
62 63 2.132762 GTCACTGATCGGTCGTGTTTT 58.867 47.619 16.43 0.00 33.56 2.43
63 64 1.604693 GGTCACTGATCGGTCGTGTTT 60.605 52.381 16.43 0.00 33.56 2.83
64 65 0.038526 GGTCACTGATCGGTCGTGTT 60.039 55.000 16.43 0.00 33.56 3.32
65 66 1.585006 GGTCACTGATCGGTCGTGT 59.415 57.895 16.43 4.76 33.56 4.49
66 67 1.514228 CGGTCACTGATCGGTCGTG 60.514 63.158 3.54 12.50 31.96 4.35
67 68 2.875485 CGGTCACTGATCGGTCGT 59.125 61.111 3.54 0.00 31.96 4.34
72 73 4.873129 CCGCCCGGTCACTGATCG 62.873 72.222 4.60 4.60 35.77 3.69
90 91 4.280494 CTCATACGTCCGGGCGGG 62.280 72.222 34.31 21.42 35.98 6.13
91 92 4.280494 CCTCATACGTCCGGGCGG 62.280 72.222 34.31 15.69 35.98 6.13
92 93 4.944372 GCCTCATACGTCCGGGCG 62.944 72.222 29.88 29.88 33.30 6.13
93 94 4.944372 CGCCTCATACGTCCGGGC 62.944 72.222 0.00 0.00 39.43 6.13
94 95 4.280494 CCGCCTCATACGTCCGGG 62.280 72.222 0.00 0.00 35.54 5.73
95 96 4.280494 CCCGCCTCATACGTCCGG 62.280 72.222 0.00 0.00 38.71 5.14
96 97 2.567564 AAACCCGCCTCATACGTCCG 62.568 60.000 0.00 0.00 0.00 4.79
97 98 1.087771 CAAACCCGCCTCATACGTCC 61.088 60.000 0.00 0.00 0.00 4.79
98 99 0.108520 TCAAACCCGCCTCATACGTC 60.109 55.000 0.00 0.00 0.00 4.34
99 100 0.108329 CTCAAACCCGCCTCATACGT 60.108 55.000 0.00 0.00 0.00 3.57
100 101 0.810031 CCTCAAACCCGCCTCATACG 60.810 60.000 0.00 0.00 0.00 3.06
101 102 1.095807 GCCTCAAACCCGCCTCATAC 61.096 60.000 0.00 0.00 0.00 2.39
102 103 1.223487 GCCTCAAACCCGCCTCATA 59.777 57.895 0.00 0.00 0.00 2.15
103 104 2.044946 GCCTCAAACCCGCCTCAT 60.045 61.111 0.00 0.00 0.00 2.90
104 105 4.697756 CGCCTCAAACCCGCCTCA 62.698 66.667 0.00 0.00 0.00 3.86
112 113 2.653953 TATAGCCGGGCGCCTCAAAC 62.654 60.000 28.56 8.15 38.78 2.93
113 114 2.377628 CTATAGCCGGGCGCCTCAAA 62.378 60.000 28.56 9.01 38.78 2.69
114 115 2.840572 TATAGCCGGGCGCCTCAA 60.841 61.111 28.56 8.22 38.78 3.02
115 116 3.303135 CTATAGCCGGGCGCCTCA 61.303 66.667 28.56 7.44 38.78 3.86
116 117 2.352032 ATCTATAGCCGGGCGCCTC 61.352 63.158 28.56 15.77 38.78 4.70
117 118 2.283966 ATCTATAGCCGGGCGCCT 60.284 61.111 28.56 9.11 38.78 5.52
118 119 2.125512 CATCTATAGCCGGGCGCC 60.126 66.667 21.18 21.18 38.78 6.53
119 120 2.815647 GCATCTATAGCCGGGCGC 60.816 66.667 14.39 0.00 37.98 6.53
120 121 1.153745 GAGCATCTATAGCCGGGCG 60.154 63.158 14.39 0.00 0.00 6.13
121 122 4.921834 GAGCATCTATAGCCGGGC 57.078 61.111 12.11 12.11 0.00 6.13
132 133 6.968250 ACTAGTATACCACGTTAAGAGCATC 58.032 40.000 0.00 0.00 0.00 3.91
142 143 6.290605 ACCAACAAAAACTAGTATACCACGT 58.709 36.000 0.00 0.00 0.00 4.49
143 144 6.400303 CGACCAACAAAAACTAGTATACCACG 60.400 42.308 0.00 0.00 0.00 4.94
144 145 6.646240 TCGACCAACAAAAACTAGTATACCAC 59.354 38.462 0.00 0.00 0.00 4.16
145 146 6.757237 TCGACCAACAAAAACTAGTATACCA 58.243 36.000 0.00 0.00 0.00 3.25
147 148 9.537848 CAATTCGACCAACAAAAACTAGTATAC 57.462 33.333 0.00 0.00 0.00 1.47
148 149 9.275398 ACAATTCGACCAACAAAAACTAGTATA 57.725 29.630 0.00 0.00 0.00 1.47
149 150 8.073768 CACAATTCGACCAACAAAAACTAGTAT 58.926 33.333 0.00 0.00 0.00 2.12
194 195 2.709934 TCTGGACCTAGCGGAGTACTAT 59.290 50.000 0.00 0.00 0.00 2.12
200 201 1.067821 GTCAATCTGGACCTAGCGGAG 59.932 57.143 0.00 0.00 0.00 4.63
217 218 1.841556 GGAGAGTGGGGGTGTGTCA 60.842 63.158 0.00 0.00 0.00 3.58
218 219 1.201429 ATGGAGAGTGGGGGTGTGTC 61.201 60.000 0.00 0.00 0.00 3.67
232 233 0.250234 TGGAGTGGAAAGCGATGGAG 59.750 55.000 0.00 0.00 0.00 3.86
234 235 1.026718 GGTGGAGTGGAAAGCGATGG 61.027 60.000 0.00 0.00 0.00 3.51
235 236 1.026718 GGGTGGAGTGGAAAGCGATG 61.027 60.000 0.00 0.00 0.00 3.84
236 237 1.299976 GGGTGGAGTGGAAAGCGAT 59.700 57.895 0.00 0.00 0.00 4.58
237 238 2.747686 GGGTGGAGTGGAAAGCGA 59.252 61.111 0.00 0.00 0.00 4.93
238 239 2.359975 GGGGTGGAGTGGAAAGCG 60.360 66.667 0.00 0.00 0.00 4.68
239 240 1.152830 TTGGGGTGGAGTGGAAAGC 59.847 57.895 0.00 0.00 0.00 3.51
240 241 0.478507 AGTTGGGGTGGAGTGGAAAG 59.521 55.000 0.00 0.00 0.00 2.62
241 242 0.476771 GAGTTGGGGTGGAGTGGAAA 59.523 55.000 0.00 0.00 0.00 3.13
242 243 0.696143 TGAGTTGGGGTGGAGTGGAA 60.696 55.000 0.00 0.00 0.00 3.53
243 244 0.696143 TTGAGTTGGGGTGGAGTGGA 60.696 55.000 0.00 0.00 0.00 4.02
329 893 8.453238 TCTGAAGAAAGCGAGAAGTATATACT 57.547 34.615 9.71 9.71 38.39 2.12
330 894 8.960075 GTTCTGAAGAAAGCGAGAAGTATATAC 58.040 37.037 4.60 4.60 35.58 1.47
331 895 7.856398 CGTTCTGAAGAAAGCGAGAAGTATATA 59.144 37.037 0.00 0.00 35.58 0.86
332 896 6.693545 CGTTCTGAAGAAAGCGAGAAGTATAT 59.306 38.462 0.00 0.00 35.58 0.86
339 903 1.935300 GCCGTTCTGAAGAAAGCGAGA 60.935 52.381 5.04 0.00 35.58 4.04
409 975 2.679132 AAGTTGCGACGCTGTCTCGT 62.679 55.000 22.08 2.60 46.38 4.18
410 976 1.548973 AAAGTTGCGACGCTGTCTCG 61.549 55.000 22.08 0.00 0.00 4.04
411 977 0.161870 GAAAGTTGCGACGCTGTCTC 59.838 55.000 22.08 7.49 0.00 3.36
412 978 1.222115 GGAAAGTTGCGACGCTGTCT 61.222 55.000 22.08 13.02 0.00 3.41
413 979 1.204312 GGAAAGTTGCGACGCTGTC 59.796 57.895 22.08 10.95 0.00 3.51
462 1028 2.548295 GGTTTCGCGCTTTGGTCCA 61.548 57.895 5.56 0.00 0.00 4.02
545 1111 3.372440 AAGTTGATGATGGTCCCTTCC 57.628 47.619 0.00 0.00 0.00 3.46
546 1112 8.519799 TTAATTAAGTTGATGATGGTCCCTTC 57.480 34.615 0.00 0.00 0.00 3.46
547 1113 8.336235 TCTTAATTAAGTTGATGATGGTCCCTT 58.664 33.333 21.69 0.00 34.93 3.95
548 1114 7.775561 GTCTTAATTAAGTTGATGATGGTCCCT 59.224 37.037 21.69 0.00 34.93 4.20
549 1115 7.556275 TGTCTTAATTAAGTTGATGATGGTCCC 59.444 37.037 21.69 0.00 34.93 4.46
561 1159 3.004862 CCGGCCGTGTCTTAATTAAGTT 58.995 45.455 26.12 0.00 34.93 2.66
679 1278 2.431942 CGCTGTCGCTAACCCGTT 60.432 61.111 0.00 0.00 0.00 4.44
701 1300 4.152045 GCTTTGACAATGTCTCTCTCTGTG 59.848 45.833 14.97 0.00 33.15 3.66
707 1306 3.122613 CGTCTGCTTTGACAATGTCTCTC 59.877 47.826 14.97 2.31 36.82 3.20
728 1327 6.351327 TCCAAAACCATTTTAAAAACTGCG 57.649 33.333 4.44 0.00 0.00 5.18
760 1359 4.263462 TGTCTATCCACAGGACTTGCAAAT 60.263 41.667 0.00 0.00 32.98 2.32
775 1375 3.181474 GCAGTAGAGTGGGTTGTCTATCC 60.181 52.174 0.00 0.00 0.00 2.59
782 1382 1.079127 CCGGCAGTAGAGTGGGTTG 60.079 63.158 0.00 0.00 0.00 3.77
847 1447 9.452065 CTACAACAGATGGTATATATACATCGC 57.548 37.037 21.56 9.68 34.98 4.58
958 1565 7.588512 ACTGCTTAAATTTGATCACTCTTCAC 58.411 34.615 0.00 0.00 0.00 3.18
991 1598 0.915364 GAGCTCCCCATCCTGTCTTT 59.085 55.000 0.87 0.00 0.00 2.52
1024 1641 3.127533 GATCACAGCGGCACCCAC 61.128 66.667 1.45 0.00 0.00 4.61
1032 1649 1.088340 CCAGAAGCAGGATCACAGCG 61.088 60.000 0.00 0.00 0.00 5.18
1074 1691 1.519455 GTCGAGTCGGATGGCTTGG 60.519 63.158 13.54 0.00 0.00 3.61
1075 1692 1.874019 CGTCGAGTCGGATGGCTTG 60.874 63.158 13.54 0.00 0.00 4.01
1076 1693 2.490217 CGTCGAGTCGGATGGCTT 59.510 61.111 13.54 0.00 0.00 4.35
1117 1734 1.902918 TCATTTGGTTGCCGCTGCT 60.903 52.632 0.70 0.00 38.71 4.24
1120 1737 1.959085 CAGTCATTTGGTTGCCGCT 59.041 52.632 0.00 0.00 0.00 5.52
1125 1742 1.541147 ACATCGGCAGTCATTTGGTTG 59.459 47.619 0.00 0.00 0.00 3.77
1135 1752 2.229543 TCGTAACACTTACATCGGCAGT 59.770 45.455 0.00 0.00 35.89 4.40
1137 1754 3.300852 TTCGTAACACTTACATCGGCA 57.699 42.857 0.00 0.00 35.89 5.69
1138 1755 3.861113 TCATTCGTAACACTTACATCGGC 59.139 43.478 0.00 0.00 35.89 5.54
1140 1757 8.380644 AGAAATTCATTCGTAACACTTACATCG 58.619 33.333 0.00 0.00 43.15 3.84
1151 1768 6.878923 ACAGGTGATGAGAAATTCATTCGTAA 59.121 34.615 0.00 0.00 46.51 3.18
1153 1770 5.248640 ACAGGTGATGAGAAATTCATTCGT 58.751 37.500 0.00 0.00 46.51 3.85
1155 1772 9.727627 GATAAACAGGTGATGAGAAATTCATTC 57.272 33.333 0.00 0.00 46.51 2.67
1156 1773 9.471702 AGATAAACAGGTGATGAGAAATTCATT 57.528 29.630 0.00 0.00 46.51 2.57
1162 1779 8.324306 AGATTCAGATAAACAGGTGATGAGAAA 58.676 33.333 0.00 0.00 0.00 2.52
1165 1782 7.438757 CAGAGATTCAGATAAACAGGTGATGAG 59.561 40.741 0.00 0.00 0.00 2.90
1178 1795 5.677319 AAACGGGTTCAGAGATTCAGATA 57.323 39.130 0.00 0.00 0.00 1.98
1179 1796 4.559862 AAACGGGTTCAGAGATTCAGAT 57.440 40.909 0.00 0.00 0.00 2.90
1255 1876 3.507786 CTTGACCACATCGACGACATTA 58.492 45.455 0.00 0.00 0.00 1.90
1301 1922 1.025113 ACATCGACGCTCCTCTTCGA 61.025 55.000 0.00 0.00 46.97 3.71
1308 1929 2.434185 TGGCAACATCGACGCTCC 60.434 61.111 0.00 0.00 46.17 4.70
1433 2054 5.733676 AGAGGAAACACAAACAAAGCAAAT 58.266 33.333 0.00 0.00 0.00 2.32
1518 2141 6.093219 CACTGCTTGAGCTTACATGAATAGTT 59.907 38.462 0.00 0.00 42.66 2.24
1519 2142 5.583854 CACTGCTTGAGCTTACATGAATAGT 59.416 40.000 0.00 0.00 42.66 2.12
1629 2260 1.405821 GATCGGTCAGGAGGTACACAG 59.594 57.143 0.00 0.00 0.00 3.66
1740 2371 3.064958 CACCTGATGTTGATGTGAGATGC 59.935 47.826 0.00 0.00 0.00 3.91
1773 2404 6.785488 TGCTGAAAATCTAGGCGTAATATG 57.215 37.500 0.00 0.00 0.00 1.78
1808 2439 1.282875 GCGTCAACAAACTGGCTCC 59.717 57.895 0.00 0.00 0.00 4.70
1815 2446 1.466855 GCACTTCTGCGTCAACAAAC 58.533 50.000 0.00 0.00 32.44 2.93
1825 2456 1.599542 AGTTGTCTTTCGCACTTCTGC 59.400 47.619 0.00 0.00 40.38 4.26
1826 2457 3.126831 AGAGTTGTCTTTCGCACTTCTG 58.873 45.455 0.00 0.00 0.00 3.02
1827 2458 3.460857 AGAGTTGTCTTTCGCACTTCT 57.539 42.857 0.00 0.00 0.00 2.85
1875 2512 8.776376 ACAAAACCCTCAATAAATTATTGCAG 57.224 30.769 18.19 15.40 43.97 4.41
1880 2517 9.315363 TGGTGTACAAAACCCTCAATAAATTAT 57.685 29.630 0.00 0.00 36.83 1.28
1960 2602 8.260818 TCTTCAATTATGAGACAAAGGGAGTAG 58.739 37.037 0.00 0.00 36.78 2.57
1999 2641 5.710984 AGACGTTTTCTGACACTATACCAG 58.289 41.667 0.00 0.00 31.12 4.00
2019 2661 6.282199 TCCTCAAGTCCTACAATGTAAGAC 57.718 41.667 12.85 12.85 0.00 3.01
2036 2678 6.119536 ACATTGTTTGTCTGTACTTCCTCAA 58.880 36.000 0.00 0.00 30.89 3.02
2037 2679 5.680619 ACATTGTTTGTCTGTACTTCCTCA 58.319 37.500 0.00 0.00 30.89 3.86
2038 2680 6.929606 ACTACATTGTTTGTCTGTACTTCCTC 59.070 38.462 0.00 0.00 39.87 3.71
2039 2681 6.827727 ACTACATTGTTTGTCTGTACTTCCT 58.172 36.000 0.00 0.00 39.87 3.36
2044 2686 6.055231 TGCAACTACATTGTTTGTCTGTAC 57.945 37.500 0.00 0.00 40.77 2.90
2049 2691 5.821204 AGTCTTGCAACTACATTGTTTGTC 58.179 37.500 0.00 0.00 40.77 3.18
2086 2728 1.131883 GGAGTCTCGCAACTACGCTTA 59.868 52.381 0.00 0.00 0.00 3.09
2150 2797 9.177608 TGGACTCAAAATAATTCTCGATCATTT 57.822 29.630 0.00 0.00 0.00 2.32
2151 2798 8.737168 TGGACTCAAAATAATTCTCGATCATT 57.263 30.769 0.00 0.00 0.00 2.57
2152 2799 8.781196 CATGGACTCAAAATAATTCTCGATCAT 58.219 33.333 0.00 0.00 0.00 2.45
2153 2800 7.770433 ACATGGACTCAAAATAATTCTCGATCA 59.230 33.333 0.00 0.00 0.00 2.92
2154 2801 8.147642 ACATGGACTCAAAATAATTCTCGATC 57.852 34.615 0.00 0.00 0.00 3.69
2155 2802 9.046296 GTACATGGACTCAAAATAATTCTCGAT 57.954 33.333 0.00 0.00 0.00 3.59
2156 2803 7.494625 GGTACATGGACTCAAAATAATTCTCGA 59.505 37.037 8.27 0.00 0.00 4.04
2157 2804 7.279981 TGGTACATGGACTCAAAATAATTCTCG 59.720 37.037 8.27 0.00 0.00 4.04
2194 2873 0.881159 TCAACCACCGGCAGTTTACG 60.881 55.000 0.00 0.00 0.00 3.18
2231 2910 2.868044 GCATGGGCTCCGAACTAGTATG 60.868 54.545 0.00 0.00 36.96 2.39
2232 2911 1.344763 GCATGGGCTCCGAACTAGTAT 59.655 52.381 0.00 0.00 36.96 2.12
2282 2961 1.632948 CTGCAGCATATCCGCATCCG 61.633 60.000 0.00 0.00 34.63 4.18
2283 2962 0.604780 ACTGCAGCATATCCGCATCC 60.605 55.000 15.27 0.00 34.63 3.51
2284 2963 0.516001 CACTGCAGCATATCCGCATC 59.484 55.000 15.27 0.00 34.63 3.91
2285 2964 1.512996 GCACTGCAGCATATCCGCAT 61.513 55.000 15.27 0.00 34.63 4.73
2286 2965 2.182181 GCACTGCAGCATATCCGCA 61.182 57.895 15.27 0.00 0.00 5.69
2287 2966 1.890979 AGCACTGCAGCATATCCGC 60.891 57.895 15.27 5.32 36.85 5.54
2347 3027 4.900635 AGCTTTGGGATAATTTAGTGCG 57.099 40.909 0.00 0.00 0.00 5.34
2387 3067 6.426025 TCATCTAGTTATCATTGAGCATGTGC 59.574 38.462 0.00 0.00 42.49 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.