>input_sequence_80960
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----------------ATGGGGAGCTCCAGCTGCTTGTCAGTGGGTGCCGCTGTGATCCTGCTTCTGGTACTGGCTTCGG
CAATGGAGGCCCAAGCCATCCGACTCGACGCGGAGACCCGGGCGTCAGTGAGCAGCAGCGGCAACCAAATGACTGCCGAT
GTAAGTGTTACGAATGAATTTCTCATCACCTGTTTATCTGAATCTCTGAACCCGTTTTCTTCAGATGCTAAC-GTGCTTG
TGTTCTTGAAAAATGCAGAAACCAACTGGGAA---TAATGTCGTCGATGTGGTCAAGGCTTCTGCTAGCTCGACAAGCGA
GTCGAAGAGGAGCGTCGATGTTGCCACGGGTGAAGTTAGGGCGGTGGCGCATAAGATGCCGGAGTTCCATGAGGACTACT
ACGGCCCGAGTGATCACAGCCCTAGGCACCACTGA---------------------------------------------
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>chr6D_1_TraesCS6D01G348100
ATATGAGGGGTGCCAGTCAGCCTAGGCGTTTGAGACCCGTTTGAGGCGTCCGTCTGGATGAAAAAACACGACCGATCAGT
GACCGGGCGGCCCGCCCGGACGTATGAGGCGGGTTTGAGGCGCCCGGCTATAGATGCTCTTAACGTGGTATACTAGTTTT
TGTTGGTCGAATTGTGGTACGTAGTTTTTGCTTTATAGTACTCCGCTAGGTCCAGATTGACACACCCCCACTCTCCATCG
CTTTCCACTCCACCCCAACTCAATCACCAGCTGACCAGGCTG--------------------------------------
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---------------------------------------------TTTCCCTCTCTTGGTCGCCGGTCGGTCTCTCCCAG
TCCCCGGCCGTAAGTATATACTTCTCGCTTTCTTCAGAACGGCTACTATACGCAT--CCCCTGGCCCTGTGCACGCACGT
AGAGACGAGTCGAGACGAGACAGCGTCGCAACTTTCCAGGGGAGGATGCGTGCGCCGCCGCGCCTGATGGACCAAAGCGC
GAAACCTGACGACACTGTCCACCATGCATGCATGCAACTTACCAGCACTTCCGGTGGCTCCATTTGATCAGGAAGGG---
-----------------------------ACCATCATCAACTTAATTAAGACACGGCCGGCCCAGCTTTCGTGCAGACAT
CCGGCCATAATTAAAGG-TGGCAAAGAAGTCCATTAAGTAAGGCATCCGTCGTCGTTGCATGCATGCATGCATGGGCAAC
GGGTTAGCGACAGCGACCCCACAGAGAGAGACATTGTCAAAGCAGACGCAGTTTTTAAAATGGTTTTGGAATTTTAAAAT
TTGCA-AGTCCTGTGGATAGACAACCCACTCTACTGCCGGAAGGTAGACATGAGTGCAGCAAACACTGGGACGGGTCGTA
AAGCAAGCGATGTATATATACC-----ATCTGTTGTAGTGTCTAGTGCTTCAAACCACTTCGCCTACTGAGCTACAGCTC
CTGCCTCTCTAGTCTATCTCTAC--ACTTCCATCTGAGCTGAGCGTGAAGAGTGATCAAATTTAAGCAGTATTCTCTAA-
---------AGACAGGATGGGGAGCTCCAGCTGCTTGTCAGTGGGTGCCGCTGTGATCCTGCTTCTGGTACTGGCTTCGG
CAATGGAGGCCCAAGCCATCCGACTCGACGCGGAGACCCGGGCGTCAGTGAGCAGCAGCGGCAACCAAATGACTGCCGAT
GTAAGTGTTACGAATGAATTTCTCATCACCTGTTTATCTGAATCTCTGAACCCGTTTTCTTCAGATGCTAAC-GTGCTTG
TGTTCTTGAAAAATGCAGAAACCAACTGG---GAATAATGTCGTCGATGTGGTCAAGGCTTCTGCTAGCTCGACAAGCGA
GTCGAAGAGGAGCGTCGATGTTGCCACGGGTGAAGTTAGGGCGGTGGCGCATAAGATGCCGGAGTTCCATGAGGACTACT
ACGGCCCGAGTGATCACAGCCCTAGGCACCACTGATGGAGCAAATTCTTCTCTATTTGCTTTGTTTGTGTTTCCTCTCTC
GATCGATGATCTCTTGTAGAACAGAGTATTTATAGCTAGGTAGACGGTGACGGCTG--TAAACTATTCATGTAAGCTCAA
GCAGTGGGCACATGCATGGCAATAGATAGCGTTGATGTGCTAACATTCTTGGCAATACGAGGTTCAAATTTCAAGCAAGA
CGTGTGA--------GATGCTGTGTACCTCCTGACCGATCAGTCCTCGCGTGGGCTTGCACCATTACAGATTTACAAAAC
TATCACGATATTGTCACCGACACTTGATGTAACCAATTGGTTGCATCACAGCATCTCACATCAACATCAGGTGGCACTAT
CACCATATTACGCCTAGATTTTCAGCAACCTGATGACAGGAGCCAGTTTGTTGACGCAGAAGTGCGAAAGACAACTCTAA
TTATATGG------ATATATATTTGCAAACTCTGCAATAATTTATTGAGGGTTTTGTA--CACCAACCGGTGCAGAGGCC
A---GGGCTTTCAACATCCTTCCGGGAAAAAAATTTAATAACTACTCCCTTTGTCTCATAATTGAAGATGTTTTTTGACA
CTGGTATAGTGTCAGAAAACGTCTTACATTGTAGGACTTGAGGAAGTACAGACAAACAATGTAGTTGCAAGACTCCTGTT
TTTTTTTTAAGCGTAGTTGCGAGACTCCTGTTTTCTCTGAAGAGTA-----TTAGAGCGAGAATTTTTTTTAGAGAAAAT
GATCGAGAATTATTTTGAGTCCATGTACCAGTGAGCA--------------------------------CTACGTAAACT
GCCGGTGGTTGATTTGTGGGCAAAGCACACATACTAGTTCGGAGCCCATGCATACCAACCCCAAAGAGTGGAAGCGTTGC
CGGATGCGGATATGCTGCAGTGCTGTTGGCCAAGTACTGCCGTACTTTACGTCCGGGCAGG-ACGGCGCACTAAATTATC
CCAAAGCTACGTACAACCACTATTTCGCACATGCTCAATGATAACTAGATGATT--------------------------
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>chr6A_134
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-----------------------------------------------------ATGCTCTTACGTGG---TACTAGTTTT
TGTTGGTCGAATTGTGGTACGTAGTTTTTGCTTT-AAGTAGTCCGCTAGGTTCAGATCAACACACCCCCACTGG------
----CCACTCCACCCCAACTCAGTCACCAGCTGACCACGCTGTTTCCCTCTGGCAAATTTGACAAATTTGACCTGTGGAT
AAAATCAAATCACAAAATGAACTGTCCGTGAAACTATTTCACACGGCTGATCTTTTTGTGTGACGCCCGACACGAAGGCG
TCACACTACACTGTGCAACGCCTCACAGATAGGCGCTACACGCCTGACCAGCGTTGCACCCAAACTGTCTAAAAATTGCC
AAGTTATTGTGCAGAGCCTGAGAGCTAGGCGCTGCACTGTATAGTGTGGCCCTAGCTCTCAAGCGCTGCACTAGTGGTTG
CACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACACTGTATAGTGTGGCGCCTAGCTCTCAGG
CGTTGCACACTGACTTAGTAATTTTTGGATCATACGGGTGTGACGCTAGCCAGGCGTGTAACGTCTATCTGTGAGTCGTT
GCACAGTATAGTGTGGTGCCTTCATGTCAGGCGTCACACAAAAAGGTCAGCCACGTAAAATAGTTTCATGAACAATTCAT
TTCGTGATTTGATTTCGTTCATAGGTCAAATTTATCAATTTTACCTTTCCCTCTCTTGGTCGCCGGTCGGTCTCTCCCAG
TCCCC--------------------------------------------------------TGGCCCTATGCACGCACGT
AGCGACGAG----------ACAGCGTCGCAACTTTCCAGGGGAGGATGCGTGCGCCGCCGCGCCTGACGGACCAAAGCGC
GAAACCTGACGACACTGTCCACCATGCATGCATGCAGCCTACCAGCACTTCCGGTGGCTCCGTTTGATCG-----GGCAT
TTTAGTAGCAAGTAATCCAGGAAGGGACCATCATCAACTACTTGATTAAGACACGGCCGGCCCAGCTTTCGTGCAGACAT
CCGGCCATGATTAAAGG-TGGCAAAGAAGTCC---AAGTAAGGCATCCGTCGTCGTTGCATGCATGCACGGGT-----AC
GGGTTAGCGACAGCGACCCTACAGACAGAGACATTGTCAAAGCAGAAGTGG-TTTACAAATGGTTTTGGAATTTTAAATT
TTGCA-AGTCCTGTAGATAGATAACCCACTCTACTGCCGGAGGGTAGACATGAGTGCAGCAAACACTCGGACGGGTCGTA
AAGCAACCGACGTGTACCCGTATATATATCTGTTGTAGTGTCTAGTGCATCAAACCACTTCGCCCACTGAGCTACAGCTC
CTGCCTCTCTAGTCTATCTCTAGGTACTTCCATCTGAGCTGAGCCTGAAGAGTGATCAAATTGAAGCAGTATTCTCTCAA
GCAAATCTTTGACAGGATGAGGAGCTTCGTCTGCTTGTCACTGGGTGCAGCTGTGATCTTGCTTCTGGTATTGGCTTCGG
CCATGGAGGCTGGAGCCATCCGACTCGACGCGGGGACCCGGGCCTCAGTCAGCGGCGGCAGTAACCAAACGGCCACTGAT
GTAAGTGGTTC---TGAAATTTTCATCACCTATTG-TCTGAATCTCTGAACCCGTTTTCTCAGGATGCTAAC-GTGCTTG
TGTTATTTAAAAATGCAGAAACCAACTAT---GAACAATGTCGTCGATGTGGTCAAGGCTTCTGCTGGCTCAACAAGCGA
GACGAAGAAGAGCGTGGACGTTGCCACGGGTGAAGTTAGGGCGGTGGCGCATAAGATGCCAGAGTTCCATGAGGACTACT
ACGGCCCGAGTGATCACAGCCCTAGGCACCACTGATGGAGCAAATTCTACACTGTTTGCTTTGTTTGTGTTTCCTCTCTC
GATCGATGATCTCTTGTAGAACAGAGTATTTATAGCTAGGTAGACGGTGACGGCTG--TAGGCTATTCATGTAAGCTCAA
GCAGTGGGCACATGGCA---AATAGATAGCGTTGATGTGCTAACATTCTTGGCAATACGAGGTTCAAATTTCAAGCAAGA
CGTGTGACTGTGTGAGATGTTGTGTGCCTCTTGACCGATCAGTCCTCGCGTGGGCTTTCACCATTACAGATT-ACAAAAC
TATCATGATATTGTCACCGACACTTGATGTAACCAATTGGTTGCATCACAATATCTCACATCAACATCAGGTGGCACTAT
CACGATATTA-GCCTAGATTTTCAGCAACCTGATGACAAGAGCCAATTTGTTGACAGGAAAGTGTGAAAGACAACTCTAA
TTATATATGTGGATATATATATTTGCAAACTTTGCA-TAATTTATTGAGAGTTTTTTCTGCACCAAGCGGTGCATAGGCC
T---GGGTTTTCAACATCCTTCCCGGAAAAAA--TTAATAATTACTCCCTCCGTCTCATAATGTAAGATGTTTTTTGACA
TTGGTGTAATGTCAGAAAACATCTTACATTGTAGGACGGAGGGAA-TACAAACAAACAATGTAGTTGCAAGACTCCTGCT
TTTTT--GAAGCATAGTTGCGAGACTCCTGTTTTCTCTGAAGAGTA-----TTAGATG----------------------
----GAGAATTATTTTGAGTCCATGTACCAGTGAGCATTTTTTTTCTCTAAAAAATGCACCAGTGAGCACTATGTAAACT
GCCGGTGGTTGATTTGTGGGCAAAGCACA--TACCAGTTCCGAGCCCATGCATACGAACCCCAAG-AGTGGAAGCGTTGC
------CGGATATGCTGCAGTGCTGTTGGCCAAGTACTGCCGTACTTTACGTCCGGGCAGGAACGGTGTACTAAATTATC
GCAAAGCTACGTACAACCACTATTTCACACATGCTCAATGATAGCTGGATGATTGATTGAGCTTAGCCACCTTTTGCAAG
GTAAGGATAAGTGCTGTCACTAAAGAATGCAGTACATGCATGATGTTCTCAAGAGAGGGTCGCAACTATGTAGTTGCAAG
ACTCCTGCTTTTTTGAAGCATAGTTGCGAGACTCCTGTTTTCTCTGAAGAGAGGGTCGACAAAAAAGGCAAAAAAGAAGA
AGAGAAAATAGCATTGTAGTATTATTTTTCATAATCATTAAAAAGCAGGCTAACGTGGTACTCCAATATTCAGCTAGAAA
TAACATACTACGGCCATGTATTGTGTGTGTTGTGCTCTCTGGTATACTCCCTCCTATCGGAAATAAGTGTCCACTTATTT
CCGATCGGAGGGAGTATATTTAGTTCAAACAGGACCAATATGATCACCAGGAAAACAAAATATAGAGCATGTACAGAGCT
AGAGCCAGCTACCATTCCAAGCACGCAAAAGCTACATCCAAAGCGTGTCCGCAGATTAATCCAACATAACCGCCAGGATT
TTCTCTTCTCCCCGTAGATGCTTTCATAAGACGCACGCACGCAGCCTCTGTCAATGCACCTACGTCGTTAGCTAGACTAG
ACAGACCGGCACCCAACCTTCCAGGACCGGGCAATGCGTGCGGCACCTGGAACCAAACACAAGAACCTAAAGCTTCTTGT
GCTTACCAGTTAATTTAAACTGTTCTAGTGTTTGGTTAAGTACTAAGGAACAAACTAGTGGCTTAAACAAATTGTTCATG
GCCCAACTTTTGTGGAAACATCCTCCCATTTAGGGTGGCATGCAAGGACGGTCTCTATATATTCGAGTTAATTAGTTGCA
GTGATTCAGAGTCATTTGCACTAAGAAATAGTTGTTTAATTTGTATATGCTGTTGATAAACCACTCCTGACAGACATCAG
TGCAGCAAACACCGGGACGGGTTGCAAAGCTGAATGCATATACACCATCTATCACGAGATTAGATGCATGCTTGAGTTCA
AACGACTTCATTAGCCTAGCTAACCTCTCCTCTCTACACCCTCTTCTGAGTTGAAGACTCACTGAAGTATACTCTCCAGC
TAGTCAATGACATTGATCTCTCACAAGATGAGGAGTTGCAATTCCAGATACTTGACACTGGCTGCAGCTGTGATCTTGCT
TCTGGTACTGATGGCGGACACAGAGGCTGAAGCCATCCGGCTAGATGCAGAGGCGCGGGCATCACTCAGCGGCAGCGGTG
GCAACTCAATGCCGTCGATGCAGAAGCCGATTGGGAACAATGCCGTCAACGTGGTCAAGGGTTCTGCTGGCTCGACCAGT
GAGACAAAGAGGAGCGTCCAAGTTGCTGCAGATGAAGTTAGGGCGGTGGCGTATAAGCTGCCGGAGTTTCATGAGGACTA
CTACGGTCCAAGTGATCACAGCCCTAGGCACCATTGATGGAGCAAATTCTTCTTTATTT
>chr6B_154
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-------------------------------------------------------------------------TAGTTTT
TGTTGGTCGAATTTGTG---GTAGTTTTTTGCTT-TAGTAGTCCGCTAGGTCCAGATCAACACACCACCACTGT------
----CCACTCCACCCCAACTCAATCACCAGCTGACCAGGCTG--------------------------------------
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---------------------------------------------TTTCCCTCTCTTGGTCGCCGGTCGGTCTCTCCCAG
TCCCCGGCCG------TATACTCCTCGCTTTCTTCAGAACGGCTACTATACGCATATCCCCAGGCCCTGTGCACGCACGT
AGAGACGAG----------ACAGCGTCGCAACTTTCCAGGGGAGGATGCGTGCGCCGCCGCGCCTGACGGACCAAAGCGC
GAAACCTGACGACACTGTCCACCATGCATGCATGCAACTTACCAGCACTTCCGGTGGCTCCATTCGATCA-----GG---
-----------------------------ACCATCATCTAGTTAATTAAGACACTGCCGGCCCAGCTTTCGTGCAGACAT
CCGGCCATAATTAAAGGGTGGTAAAGAAGTCCATTAAGTAAGGCATCCGTCGTCGTTGCATGAGTGCATGCATGGGC-AC
GGGTTAGCGACAGCGACCCTACAGACAGAGACATTGTCAAACCGGAAGCAG-TTTTAAAATGGTTTTGGAATTTTTAATT
TTGCAAAGTCCTGTAGATAGATTACCCACTCTACTGCCGGAAGGTAGACAGGAGTGCGGCAAACACTGGGACGGGTCGTA
AAGCAACCGATGTATATATACC-----ATCTGTTGTGATGTCTAGGGCTTCAAACCACTTCGCCTACTTAGCTACAGCTC
CTGCCTCT-TAGTCTATCTCTAC--ACTTCCATCTGAGCTGAGCCTGAAGAGTGATCAAATTTAAGCAGTATTCTCTTAA
CCAAATCTCAGACAGGATGGGGAGCTCCAGCCGCTTTTCACTGGGCGCGGCTGTGATCCTGCTTCTGGTACTGGCTTCGG
CCATGAAGGCTGGAGCCATCCGACTCGACGCGGAGACCCGGGCGTCAGTCAGCGGCCGCAGTAACCAAATGGCCACTGAT
GTAAGTGGTTC---TGAACTTTTCATCACCTGTTG-TCTGAATATCTAAACTTGATATGTTCAGATGCTAACAGTGCTTG
TGTTCTTGAAAAATGCAGAAACCGATTGGGAAGAACAATGTCGTCGATGTGGTCAAGGGATCTGCTGGTTTGACAAGCGA
GATGAAGAAGAGCGTGGACGTTGCCGCGAGTGAAGTTAGGGCGGTGGCGCATAAGATGCCGGAGTTCCATGAGGACTACT
ACGGCCCGAGTGATCACAGCCCAAGGCACCACTGATGGAGCAAATTCTTCTCTGTTTGCTTTGTTTGTGTTTCCTCTCTC
GAT----GATCTCTTGTAAAACAGAGTATTTATAGCTAGGTAGACAGCGGCGGCTGTATAGGCTATTCATGTAAGCTCAA
GCAGTGGGTACATGCATGGCAATAGATAGCGTCGATGTGCTAACATTCTTGGCAATACGAGGTTCAAATTTCAAGCAAGA
CGTGTA------TGAGATGTTGTGTACCTCTTGACCGATCAGTCCTCGCGTGGGCTTGCACCATTACAGATTTACAAAAC
TATCACGATATTGTCACCGACACTTGATGTAACCAATTGGTTGCATCGCAACATCTCACATCAACATCAGGTGCCACTAT
CACGATATTACGCCTAGATTTTCAGCAACCTGATGACAAGAGCCAATTTGTTGACAAGGAAGTGCGAAAGGCCTATATAG
GGAAG-----------------------------------------------------TGCATCGATCGGTGCAGAGGCC
AGGAGGGTTTTCAACATCTTTCGTGGAAAAATTAATAAC-----------------------------------------
----------------------------------------------TACGAACAAACAATGTAGTTGCAAGACTCCTTTT
TTTCTTTGAAGCGAAGTTGCAAGACTCCTGGCACCTAGTTAGCGAGAGTACTTAGATA----------------------
----GAGAATTATTTGAAGTGCATGTACTAGTGAGCATTTTTTTTCTCTAAAAAATGTACCAGTGAT-------TAAACT
GCCGGTGGTTGATTTGTGGGCAAAGCACA--TGCTAGTTCGGAGCCCATGCATACCAACCCCAAGGAGTGGAAGCCTTGC
------CGGATATGCTGCAGTGCTGTTGGCCAAGTCCTGCCGTACTTTACGTCCCGGGAGG-ACGGTGCACTAAATTATC
CTAAAGCTACGTACAACCACTATTTCACACATGCTCAATGATAACTAGATGATT--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SSSS-SSS----------
----------------------------------S-----S----------------SS-------------S-SSSSSS
SSSS----------------------------------------------------------------------------
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----------SSSSSS------S---------------------------------------------------------
---------SSSSSSSSSS------------------------------------------------S------------
----------------------------------------------------------------------SSSSS-----
--------------------------------------S-----------------------------------------
-----------------------------------------------------------------------------S--
-------------------S-----S--------------------S----S--------------------------S-
--------------S------S----------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------S--------------------------------S--
----------------------------------------S-------S-------------------------------
-S--------SSS------------------------------------S---S--S--S-S---------S-SS-S---
-------S-S-SSS----S--S------------SS--------------------------------------------
-----------------------------------S------------------------------S-------------
-S------S------S--S-------------------------------------------------------------
-----------------------------------------------------S--------------------------
------------------------------------------------------------SS------------------
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-------------------S----------S-------------------------------------------------
--------------------------------------------------S-----------------------------
---S----------------------------------S------S---------SSS----------------------
------SS-----------------------S----S------------S-----S-S--------S-------------
-------S---------------S--------SS-------S--------SS----------SS----------------
S----S--S-----------S----------------SSSS----S----S-----------------------------
-------S------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSS--------------------------------------------------------------------S-------
-----------------------------SS---------------------------------S---------------
SSSSSS------------------------------------------------------------S-------------
--------------------------S-----------------------------------------------------
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>forward_41
---------------------CTAGGCGTTTGAGACCCGTT---------------------------------------
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>reverse_1922
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-TCGAAGAGGAGCGTCGATGT-----------------------------------------------------------
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>forward_84
----------------------------------------------------------------AACACGACCGATCAGT
GACC----------------------------------------------------------------------------
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>reverse_2439
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--------------------------------------GGAGCCAGTTTGTTGACGC-----------------------
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