Multiple sequence alignment - TraesCS6D01G326800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G326800 chr6D 100.000 2465 0 0 1 2465 431855387 431857851 0.000000e+00 4553
1 TraesCS6D01G326800 chr6B 88.257 1635 99 46 561 2141 651990419 651992014 0.000000e+00 1869
2 TraesCS6D01G326800 chr6B 82.406 557 86 9 1 550 651989887 651990438 2.220000e-130 475
3 TraesCS6D01G326800 chrUn 86.846 1262 101 33 756 1969 74601933 74603177 0.000000e+00 1351
4 TraesCS6D01G326800 chrUn 83.452 562 73 16 1 552 74601197 74601748 2.830000e-139 505
5 TraesCS6D01G326800 chr1A 89.385 829 53 25 792 1597 557099856 557099040 0.000000e+00 1011
6 TraesCS6D01G326800 chr1A 87.891 768 53 20 845 1589 546212257 546213007 0.000000e+00 867
7 TraesCS6D01G326800 chr1B 85.946 925 77 32 798 1694 641523806 641522907 0.000000e+00 939
8 TraesCS6D01G326800 chr1B 88.372 774 51 18 845 1590 620551513 620552275 0.000000e+00 894
9 TraesCS6D01G326800 chr1B 90.107 657 46 10 845 1491 620129993 620129346 0.000000e+00 835
10 TraesCS6D01G326800 chr1B 91.000 600 37 12 991 1589 610558417 610559000 0.000000e+00 793
11 TraesCS6D01G326800 chr1D 91.098 674 39 13 845 1512 451524484 451525142 0.000000e+00 893
12 TraesCS6D01G326800 chr1D 86.865 807 54 23 792 1577 464802735 464801960 0.000000e+00 856
13 TraesCS6D01G326800 chr1D 90.968 620 27 19 991 1589 446434809 446435420 0.000000e+00 808
14 TraesCS6D01G326800 chr3D 100.000 108 0 0 2358 2465 39895127 39895234 1.490000e-47 200
15 TraesCS6D01G326800 chr3D 100.000 105 0 0 2361 2465 39859102 39859206 6.960000e-46 195
16 TraesCS6D01G326800 chr7B 100.000 106 0 0 2360 2465 122772303 122772408 1.930000e-46 196
17 TraesCS6D01G326800 chr7B 100.000 104 0 0 2362 2465 117213255 117213358 2.500000e-45 193
18 TraesCS6D01G326800 chr7B 100.000 104 0 0 2362 2465 117218207 117218104 2.500000e-45 193
19 TraesCS6D01G326800 chr6A 100.000 105 0 0 2361 2465 73784108 73784004 6.960000e-46 195
20 TraesCS6D01G326800 chr3B 100.000 105 0 0 2361 2465 756309289 756309185 6.960000e-46 195
21 TraesCS6D01G326800 chr3A 99.074 108 1 0 2358 2465 26152559 26152666 6.960000e-46 195
22 TraesCS6D01G326800 chr5A 100.000 104 0 0 2362 2465 632255895 632255792 2.500000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G326800 chr6D 431855387 431857851 2464 False 4553 4553 100.0000 1 2465 1 chr6D.!!$F1 2464
1 TraesCS6D01G326800 chr6B 651989887 651992014 2127 False 1172 1869 85.3315 1 2141 2 chr6B.!!$F1 2140
2 TraesCS6D01G326800 chrUn 74601197 74603177 1980 False 928 1351 85.1490 1 1969 2 chrUn.!!$F1 1968
3 TraesCS6D01G326800 chr1A 557099040 557099856 816 True 1011 1011 89.3850 792 1597 1 chr1A.!!$R1 805
4 TraesCS6D01G326800 chr1A 546212257 546213007 750 False 867 867 87.8910 845 1589 1 chr1A.!!$F1 744
5 TraesCS6D01G326800 chr1B 641522907 641523806 899 True 939 939 85.9460 798 1694 1 chr1B.!!$R2 896
6 TraesCS6D01G326800 chr1B 620551513 620552275 762 False 894 894 88.3720 845 1590 1 chr1B.!!$F2 745
7 TraesCS6D01G326800 chr1B 620129346 620129993 647 True 835 835 90.1070 845 1491 1 chr1B.!!$R1 646
8 TraesCS6D01G326800 chr1B 610558417 610559000 583 False 793 793 91.0000 991 1589 1 chr1B.!!$F1 598
9 TraesCS6D01G326800 chr1D 451524484 451525142 658 False 893 893 91.0980 845 1512 1 chr1D.!!$F2 667
10 TraesCS6D01G326800 chr1D 464801960 464802735 775 True 856 856 86.8650 792 1577 1 chr1D.!!$R1 785
11 TraesCS6D01G326800 chr1D 446434809 446435420 611 False 808 808 90.9680 991 1589 1 chr1D.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 562 0.044397 AGGGAAGGGAGGGGAAGTAC 59.956 60.0 0.0 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2445 0.035317 ACGATGCTGCCAAGACTGAA 59.965 50.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.208599 AGGTTTCCATCACGTCAAATAACATT 59.791 34.615 0.00 0.00 0.00 2.71
44 45 7.148820 CGTCAAATAACATTGATTTTCACCCAC 60.149 37.037 0.00 0.00 41.09 4.61
50 51 7.479352 AACATTGATTTTCACCCACATATCA 57.521 32.000 0.00 0.00 0.00 2.15
59 60 4.096681 TCACCCACATATCAGTGTTCTCT 58.903 43.478 0.00 0.00 37.82 3.10
60 61 4.160439 TCACCCACATATCAGTGTTCTCTC 59.840 45.833 0.00 0.00 37.82 3.20
61 62 4.161189 CACCCACATATCAGTGTTCTCTCT 59.839 45.833 0.00 0.00 37.82 3.10
62 63 5.360999 CACCCACATATCAGTGTTCTCTCTA 59.639 44.000 0.00 0.00 37.82 2.43
63 64 5.958380 ACCCACATATCAGTGTTCTCTCTAA 59.042 40.000 0.00 0.00 37.82 2.10
66 74 7.418368 CCCACATATCAGTGTTCTCTCTAATGT 60.418 40.741 0.00 0.00 37.82 2.71
69 77 9.950496 ACATATCAGTGTTCTCTCTAATGTTTT 57.050 29.630 0.00 0.00 0.00 2.43
76 84 8.261522 AGTGTTCTCTCTAATGTTTTAGATCCC 58.738 37.037 0.00 0.00 42.22 3.85
77 85 7.222999 GTGTTCTCTCTAATGTTTTAGATCCCG 59.777 40.741 0.00 0.00 42.22 5.14
79 87 7.040473 TCTCTCTAATGTTTTAGATCCCGTC 57.960 40.000 0.00 0.00 42.22 4.79
94 102 1.997606 CCCGTCGTTGGTTAAGATCAC 59.002 52.381 0.00 0.00 0.00 3.06
96 104 2.587956 CGTCGTTGGTTAAGATCACGA 58.412 47.619 0.00 0.00 0.00 4.35
117 125 5.243730 ACGATGAAATCAATCAAAAGGGTGT 59.756 36.000 0.00 0.00 45.97 4.16
121 129 0.313672 TCAATCAAAAGGGTGTGCGC 59.686 50.000 0.00 0.00 0.00 6.09
126 134 2.542907 AAAAGGGTGTGCGCACGAG 61.543 57.895 33.22 0.00 46.13 4.18
202 211 9.182214 ACACTAATGCAAATTTAGACTCATCAT 57.818 29.630 11.59 0.00 32.25 2.45
207 216 4.731483 GCAAATTTAGACTCATCATGCGCA 60.731 41.667 14.96 14.96 0.00 6.09
208 217 5.516996 CAAATTTAGACTCATCATGCGCAT 58.483 37.500 19.28 19.28 0.00 4.73
210 219 4.801147 TTTAGACTCATCATGCGCATTC 57.199 40.909 22.81 14.84 0.00 2.67
236 246 4.722700 CCCACGCTCCCCAACTGG 62.723 72.222 0.00 0.00 0.00 4.00
246 256 2.347490 CCAACTGGGAGGTCACGG 59.653 66.667 0.00 0.00 40.01 4.94
289 299 2.439701 TCGAGGGGACGCCACTAG 60.440 66.667 11.67 1.60 37.42 2.57
291 301 1.452651 CGAGGGGACGCCACTAGTA 60.453 63.158 11.67 0.00 37.42 1.82
337 348 3.465403 CCGAGTCTGAGGGCCCAG 61.465 72.222 27.56 14.49 35.55 4.45
351 364 2.693864 CCAGGGGGCTCATGTCCT 60.694 66.667 0.00 0.00 38.23 3.85
378 391 0.172578 CATGAGTCAACGCGAGGGTA 59.827 55.000 15.93 0.00 0.00 3.69
406 419 1.148027 AGATCTCCTTAGCCCCGATGA 59.852 52.381 0.00 0.00 0.00 2.92
408 421 0.759436 TCTCCTTAGCCCCGATGACC 60.759 60.000 0.00 0.00 0.00 4.02
414 427 1.116536 TAGCCCCGATGACCGCAATA 61.117 55.000 0.00 0.00 36.84 1.90
425 438 1.742831 GACCGCAATATGTTCCAAGCA 59.257 47.619 0.00 0.00 0.00 3.91
429 442 2.164219 CGCAATATGTTCCAAGCAAGGT 59.836 45.455 0.00 0.00 0.00 3.50
433 446 1.620822 ATGTTCCAAGCAAGGTCCAC 58.379 50.000 0.00 0.00 0.00 4.02
434 447 0.257328 TGTTCCAAGCAAGGTCCACA 59.743 50.000 0.00 0.00 0.00 4.17
441 454 1.668151 GCAAGGTCCACACTCGTCC 60.668 63.158 0.00 0.00 0.00 4.79
442 455 2.050269 CAAGGTCCACACTCGTCCT 58.950 57.895 0.00 0.00 0.00 3.85
443 456 0.319900 CAAGGTCCACACTCGTCCTG 60.320 60.000 0.00 0.00 0.00 3.86
489 502 3.862267 CGAGATCAGACAAGTGCTTTAGG 59.138 47.826 0.00 0.00 0.00 2.69
499 512 3.434940 AGTGCTTTAGGGGAATCGTTT 57.565 42.857 0.00 0.00 0.00 3.60
505 518 4.781934 CTTTAGGGGAATCGTTTGAGGAT 58.218 43.478 0.00 0.00 0.00 3.24
506 519 4.417426 TTAGGGGAATCGTTTGAGGATC 57.583 45.455 0.00 0.00 0.00 3.36
525 538 1.072648 TCGAGAACCCAAAACCCGAAT 59.927 47.619 0.00 0.00 0.00 3.34
547 560 1.083141 GAGGGAAGGGAGGGGAAGT 59.917 63.158 0.00 0.00 0.00 3.01
548 561 0.342313 GAGGGAAGGGAGGGGAAGTA 59.658 60.000 0.00 0.00 0.00 2.24
549 562 0.044397 AGGGAAGGGAGGGGAAGTAC 59.956 60.000 0.00 0.00 0.00 2.73
550 563 0.987081 GGGAAGGGAGGGGAAGTACC 60.987 65.000 0.00 0.00 38.08 3.34
551 564 0.044397 GGAAGGGAGGGGAAGTACCT 59.956 60.000 0.00 0.00 42.18 3.08
552 565 1.557426 GGAAGGGAGGGGAAGTACCTT 60.557 57.143 0.00 0.00 43.79 3.50
553 566 2.276391 GAAGGGAGGGGAAGTACCTTT 58.724 52.381 0.00 0.00 41.35 3.11
554 567 2.452923 AGGGAGGGGAAGTACCTTTT 57.547 50.000 0.00 0.00 38.79 2.27
555 568 2.727024 AGGGAGGGGAAGTACCTTTTT 58.273 47.619 0.00 0.00 38.79 1.94
576 589 4.382386 TTTTTAGGTGAAGGAGGGGAAG 57.618 45.455 0.00 0.00 0.00 3.46
594 607 3.056035 GGAAGTACCTGAATCGAGGTTGT 60.056 47.826 9.09 0.00 44.53 3.32
612 631 1.379977 TAGACTGTGGCCTCTCGGG 60.380 63.158 3.32 0.00 38.36 5.14
670 690 2.165641 TCCGAGTCGCATGAGTAACATT 59.834 45.455 7.12 0.00 37.07 2.71
675 701 3.120199 AGTCGCATGAGTAACATTGTTGC 60.120 43.478 12.30 10.76 37.07 4.17
692 718 5.830000 TGTTGCGAGAGAAGTAATAGCTA 57.170 39.130 0.00 0.00 0.00 3.32
732 759 2.298446 TGGCATTGCATCCGAAAAAGAA 59.702 40.909 11.39 0.00 0.00 2.52
746 773 7.867752 TCCGAAAAAGAATACAAAAGGTGTAG 58.132 34.615 0.00 0.00 45.88 2.74
752 779 9.961265 AAAAGAATACAAAAGGTGTAGTAAAGC 57.039 29.630 0.00 0.00 45.88 3.51
753 780 7.683437 AGAATACAAAAGGTGTAGTAAAGCC 57.317 36.000 0.00 0.00 45.88 4.35
788 856 2.869897 TCTGTTTTTGTGTGCCGAAAC 58.130 42.857 0.00 0.00 33.72 2.78
795 863 0.100325 TGTGTGCCGAAACTGCAAAG 59.900 50.000 0.00 0.00 41.06 2.77
822 890 1.135689 CCAGCCACGGAGAAAATTTCG 60.136 52.381 0.00 0.00 34.02 3.46
1465 1557 1.834263 CCAAGTTCACCTCCTCCTAGG 59.166 57.143 0.82 0.82 42.82 3.02
1541 1701 6.623979 TCTCTCTCAAGTAGTGGTAGTAGT 57.376 41.667 0.00 0.00 0.00 2.73
1542 1702 7.730672 TCTCTCTCAAGTAGTGGTAGTAGTA 57.269 40.000 0.00 0.00 0.00 1.82
1543 1703 7.784037 TCTCTCTCAAGTAGTGGTAGTAGTAG 58.216 42.308 0.00 0.00 0.00 2.57
1544 1704 7.399765 TCTCTCTCAAGTAGTGGTAGTAGTAGT 59.600 40.741 0.00 0.00 0.00 2.73
1545 1705 7.915930 TCTCTCAAGTAGTGGTAGTAGTAGTT 58.084 38.462 0.00 0.00 0.00 2.24
1546 1706 7.823310 TCTCTCAAGTAGTGGTAGTAGTAGTTG 59.177 40.741 0.00 0.00 37.86 3.16
1547 1707 7.456725 TCTCAAGTAGTGGTAGTAGTAGTTGT 58.543 38.462 0.00 0.00 37.79 3.32
1548 1708 7.389884 TCTCAAGTAGTGGTAGTAGTAGTTGTG 59.610 40.741 0.00 0.00 37.79 3.33
1549 1709 5.893897 AGTAGTGGTAGTAGTAGTTGTGC 57.106 43.478 0.00 0.00 0.00 4.57
1550 1710 5.319453 AGTAGTGGTAGTAGTAGTTGTGCA 58.681 41.667 0.00 0.00 0.00 4.57
1551 1711 4.516365 AGTGGTAGTAGTAGTTGTGCAC 57.484 45.455 10.75 10.75 0.00 4.57
1621 1816 7.601508 TGCAAGCTGATATCTATGTAGAATGTG 59.398 37.037 3.98 0.00 35.69 3.21
1623 1818 8.309656 CAAGCTGATATCTATGTAGAATGTGGA 58.690 37.037 3.98 0.00 35.69 4.02
1634 1830 4.578516 TGTAGAATGTGGAAGTTGTGGTTG 59.421 41.667 0.00 0.00 0.00 3.77
1636 1832 3.381272 AGAATGTGGAAGTTGTGGTTGTG 59.619 43.478 0.00 0.00 0.00 3.33
1648 1844 2.832733 TGTGGTTGTGTATCCGTATCCA 59.167 45.455 0.00 0.00 0.00 3.41
1664 1861 4.869861 CGTATCCACAGTGATGATTTGACA 59.130 41.667 0.62 0.00 0.00 3.58
1697 1894 6.346199 GCTTTTCTACTCTTCTGAACTGAACG 60.346 42.308 0.00 0.00 0.00 3.95
1728 1925 3.404899 CTGGCCAATTTGCATTTTGTCT 58.595 40.909 7.01 0.00 0.00 3.41
1734 1931 3.648339 ATTTGCATTTTGTCTGCGAGT 57.352 38.095 0.00 0.00 42.62 4.18
1747 1944 2.493675 TCTGCGAGTTCTAGTGCTGATT 59.506 45.455 0.00 0.00 31.61 2.57
1779 2002 4.093408 TGCAAACTGAGATGCGATTTAGAC 59.907 41.667 9.59 0.00 45.47 2.59
1825 2052 7.572523 TGTGATTTCTTCAGTCTGTGATTTT 57.427 32.000 0.00 0.00 34.17 1.82
2006 2250 7.253883 GCAGAATTGAGTCTTGTTCTTGTTTTG 60.254 37.037 0.00 0.00 0.00 2.44
2007 2251 7.221452 CAGAATTGAGTCTTGTTCTTGTTTTGG 59.779 37.037 0.00 0.00 0.00 3.28
2065 2310 3.485877 GCGATTAGTGTCAGTCAATTGGC 60.486 47.826 0.50 0.50 0.00 4.52
2079 2328 4.162592 TGGCAAACCAGTCTGCAG 57.837 55.556 7.63 7.63 42.67 4.41
2092 2341 3.324099 CTGCAGCAGCTTGGCTTCG 62.324 63.158 10.14 0.00 42.71 3.79
2099 2348 0.031178 CAGCTTGGCTTCGCTGTTTT 59.969 50.000 12.77 0.00 46.38 2.43
2107 2356 2.519963 GCTTCGCTGTTTTATTGCCTC 58.480 47.619 0.00 0.00 0.00 4.70
2141 2390 7.435068 TGAAGAAAACTTACATGCCTTCTAC 57.565 36.000 0.00 0.00 32.27 2.59
2142 2391 6.147164 TGAAGAAAACTTACATGCCTTCTACG 59.853 38.462 0.00 0.00 32.27 3.51
2143 2392 4.392138 AGAAAACTTACATGCCTTCTACGC 59.608 41.667 0.00 0.00 0.00 4.42
2144 2393 3.328382 AACTTACATGCCTTCTACGCA 57.672 42.857 0.00 0.00 41.28 5.24
2145 2394 2.618053 ACTTACATGCCTTCTACGCAC 58.382 47.619 0.00 0.00 39.49 5.34
2146 2395 2.028476 ACTTACATGCCTTCTACGCACA 60.028 45.455 0.00 0.00 39.49 4.57
2147 2396 2.979814 TACATGCCTTCTACGCACAT 57.020 45.000 0.00 0.00 39.49 3.21
2148 2397 2.113860 ACATGCCTTCTACGCACATT 57.886 45.000 0.00 0.00 39.49 2.71
2149 2398 2.436417 ACATGCCTTCTACGCACATTT 58.564 42.857 0.00 0.00 39.49 2.32
2150 2399 2.819608 ACATGCCTTCTACGCACATTTT 59.180 40.909 0.00 0.00 39.49 1.82
2151 2400 2.987413 TGCCTTCTACGCACATTTTG 57.013 45.000 0.00 0.00 0.00 2.44
2152 2401 2.226330 TGCCTTCTACGCACATTTTGT 58.774 42.857 0.00 0.00 0.00 2.83
2164 2413 3.110447 ACATTTTGTGTGCCATGGAAC 57.890 42.857 16.92 16.92 40.28 3.62
2165 2414 2.060284 CATTTTGTGTGCCATGGAACG 58.940 47.619 18.40 0.00 0.00 3.95
2166 2415 0.387202 TTTTGTGTGCCATGGAACGG 59.613 50.000 18.40 0.00 0.00 4.44
2167 2416 0.466372 TTTGTGTGCCATGGAACGGA 60.466 50.000 18.40 2.10 0.00 4.69
2168 2417 0.466372 TTGTGTGCCATGGAACGGAA 60.466 50.000 18.40 9.21 0.00 4.30
2169 2418 0.888736 TGTGTGCCATGGAACGGAAG 60.889 55.000 18.40 0.00 0.00 3.46
2170 2419 1.303236 TGTGCCATGGAACGGAAGG 60.303 57.895 18.40 0.00 0.00 3.46
2171 2420 1.303317 GTGCCATGGAACGGAAGGT 60.303 57.895 18.40 0.00 0.00 3.50
2172 2421 0.035820 GTGCCATGGAACGGAAGGTA 60.036 55.000 18.40 0.00 0.00 3.08
2173 2422 0.916086 TGCCATGGAACGGAAGGTAT 59.084 50.000 18.40 0.00 0.00 2.73
2174 2423 1.308998 GCCATGGAACGGAAGGTATG 58.691 55.000 18.40 0.00 0.00 2.39
2175 2424 1.308998 CCATGGAACGGAAGGTATGC 58.691 55.000 5.56 0.00 0.00 3.14
2176 2425 1.134098 CCATGGAACGGAAGGTATGCT 60.134 52.381 5.56 0.00 0.00 3.79
2177 2426 2.213499 CATGGAACGGAAGGTATGCTC 58.787 52.381 0.00 0.00 0.00 4.26
2178 2427 1.568504 TGGAACGGAAGGTATGCTCT 58.431 50.000 0.00 0.00 0.00 4.09
2179 2428 1.906574 TGGAACGGAAGGTATGCTCTT 59.093 47.619 0.00 0.00 0.00 2.85
2180 2429 2.280628 GGAACGGAAGGTATGCTCTTG 58.719 52.381 0.00 0.00 0.00 3.02
2181 2430 2.354805 GGAACGGAAGGTATGCTCTTGT 60.355 50.000 0.00 0.00 0.00 3.16
2182 2431 2.674796 ACGGAAGGTATGCTCTTGTC 57.325 50.000 0.00 0.00 0.00 3.18
2183 2432 1.207329 ACGGAAGGTATGCTCTTGTCC 59.793 52.381 0.00 0.00 0.00 4.02
2184 2433 1.482593 CGGAAGGTATGCTCTTGTCCT 59.517 52.381 0.00 0.00 0.00 3.85
2185 2434 2.739932 CGGAAGGTATGCTCTTGTCCTG 60.740 54.545 0.00 0.00 0.00 3.86
2186 2435 2.237392 GGAAGGTATGCTCTTGTCCTGT 59.763 50.000 0.00 0.00 0.00 4.00
2187 2436 3.265791 GAAGGTATGCTCTTGTCCTGTG 58.734 50.000 0.00 0.00 0.00 3.66
2188 2437 1.556911 AGGTATGCTCTTGTCCTGTGG 59.443 52.381 0.00 0.00 0.00 4.17
2189 2438 1.373570 GTATGCTCTTGTCCTGTGGC 58.626 55.000 0.00 0.00 0.00 5.01
2190 2439 0.253044 TATGCTCTTGTCCTGTGGCC 59.747 55.000 0.00 0.00 0.00 5.36
2191 2440 2.743928 GCTCTTGTCCTGTGGCCG 60.744 66.667 0.00 0.00 0.00 6.13
2192 2441 2.046892 CTCTTGTCCTGTGGCCGG 60.047 66.667 0.00 0.00 0.00 6.13
2193 2442 2.525629 TCTTGTCCTGTGGCCGGA 60.526 61.111 5.05 0.00 0.00 5.14
2194 2443 2.046892 CTTGTCCTGTGGCCGGAG 60.047 66.667 5.05 0.00 0.00 4.63
2195 2444 4.329545 TTGTCCTGTGGCCGGAGC 62.330 66.667 5.05 0.00 38.76 4.70
2197 2446 4.021925 GTCCTGTGGCCGGAGCTT 62.022 66.667 5.05 0.00 39.73 3.74
2198 2447 3.706373 TCCTGTGGCCGGAGCTTC 61.706 66.667 5.05 0.00 39.73 3.86
2199 2448 4.020617 CCTGTGGCCGGAGCTTCA 62.021 66.667 5.05 0.00 39.73 3.02
2200 2449 2.435586 CTGTGGCCGGAGCTTCAG 60.436 66.667 5.05 1.65 39.73 3.02
2201 2450 3.241530 TGTGGCCGGAGCTTCAGT 61.242 61.111 5.05 0.00 39.73 3.41
2202 2451 2.435059 GTGGCCGGAGCTTCAGTC 60.435 66.667 5.05 0.00 39.73 3.51
2203 2452 2.604686 TGGCCGGAGCTTCAGTCT 60.605 61.111 5.05 0.00 39.73 3.24
2204 2453 2.217038 TGGCCGGAGCTTCAGTCTT 61.217 57.895 5.05 0.00 39.73 3.01
2205 2454 1.743252 GGCCGGAGCTTCAGTCTTG 60.743 63.158 5.05 0.00 39.73 3.02
2206 2455 1.743252 GCCGGAGCTTCAGTCTTGG 60.743 63.158 5.05 0.00 35.50 3.61
2207 2456 1.743252 CCGGAGCTTCAGTCTTGGC 60.743 63.158 0.00 0.00 0.00 4.52
2208 2457 1.004560 CGGAGCTTCAGTCTTGGCA 60.005 57.895 0.00 0.00 0.00 4.92
2209 2458 1.018226 CGGAGCTTCAGTCTTGGCAG 61.018 60.000 0.00 0.00 0.00 4.85
2210 2459 1.304509 GGAGCTTCAGTCTTGGCAGC 61.305 60.000 0.00 0.00 33.57 5.25
2211 2460 0.604780 GAGCTTCAGTCTTGGCAGCA 60.605 55.000 0.00 0.00 34.97 4.41
2212 2461 0.037877 AGCTTCAGTCTTGGCAGCAT 59.962 50.000 0.00 0.00 34.97 3.79
2213 2462 0.450983 GCTTCAGTCTTGGCAGCATC 59.549 55.000 0.00 0.00 33.59 3.91
2214 2463 0.725686 CTTCAGTCTTGGCAGCATCG 59.274 55.000 0.00 0.00 0.00 3.84
2215 2464 0.035317 TTCAGTCTTGGCAGCATCGT 59.965 50.000 0.00 0.00 0.00 3.73
2216 2465 0.671472 TCAGTCTTGGCAGCATCGTG 60.671 55.000 0.00 0.00 0.00 4.35
2217 2466 0.952497 CAGTCTTGGCAGCATCGTGT 60.952 55.000 0.00 0.00 0.00 4.49
2218 2467 0.952497 AGTCTTGGCAGCATCGTGTG 60.952 55.000 0.00 0.00 0.00 3.82
2231 2480 4.944962 CATCGTGTGCTGAAAATAGGAA 57.055 40.909 0.00 0.00 0.00 3.36
2232 2481 5.295431 CATCGTGTGCTGAAAATAGGAAA 57.705 39.130 0.00 0.00 0.00 3.13
2233 2482 5.883661 CATCGTGTGCTGAAAATAGGAAAT 58.116 37.500 0.00 0.00 0.00 2.17
2234 2483 5.295431 TCGTGTGCTGAAAATAGGAAATG 57.705 39.130 0.00 0.00 0.00 2.32
2235 2484 5.000591 TCGTGTGCTGAAAATAGGAAATGA 58.999 37.500 0.00 0.00 0.00 2.57
2236 2485 5.122239 TCGTGTGCTGAAAATAGGAAATGAG 59.878 40.000 0.00 0.00 0.00 2.90
2237 2486 5.106555 CGTGTGCTGAAAATAGGAAATGAGT 60.107 40.000 0.00 0.00 0.00 3.41
2238 2487 6.568462 CGTGTGCTGAAAATAGGAAATGAGTT 60.568 38.462 0.00 0.00 0.00 3.01
2239 2488 7.360861 CGTGTGCTGAAAATAGGAAATGAGTTA 60.361 37.037 0.00 0.00 0.00 2.24
2240 2489 8.462016 GTGTGCTGAAAATAGGAAATGAGTTAT 58.538 33.333 0.00 0.00 0.00 1.89
2241 2490 8.677300 TGTGCTGAAAATAGGAAATGAGTTATC 58.323 33.333 0.00 0.00 0.00 1.75
2242 2491 8.131731 GTGCTGAAAATAGGAAATGAGTTATCC 58.868 37.037 0.00 0.00 0.00 2.59
2243 2492 7.833682 TGCTGAAAATAGGAAATGAGTTATCCA 59.166 33.333 0.00 0.00 35.62 3.41
2244 2493 8.131731 GCTGAAAATAGGAAATGAGTTATCCAC 58.868 37.037 0.00 0.00 35.62 4.02
2245 2494 9.177608 CTGAAAATAGGAAATGAGTTATCCACA 57.822 33.333 0.00 0.00 35.62 4.17
2246 2495 9.527157 TGAAAATAGGAAATGAGTTATCCACAA 57.473 29.630 0.00 0.00 35.62 3.33
2249 2498 9.699410 AAATAGGAAATGAGTTATCCACAATCA 57.301 29.630 0.00 0.00 35.62 2.57
2250 2499 8.915057 ATAGGAAATGAGTTATCCACAATCAG 57.085 34.615 0.00 0.00 35.62 2.90
2251 2500 6.725364 AGGAAATGAGTTATCCACAATCAGT 58.275 36.000 0.00 0.00 35.62 3.41
2252 2501 6.825721 AGGAAATGAGTTATCCACAATCAGTC 59.174 38.462 0.00 0.00 35.62 3.51
2253 2502 6.238211 GGAAATGAGTTATCCACAATCAGTCG 60.238 42.308 0.00 0.00 33.30 4.18
2254 2503 5.598416 ATGAGTTATCCACAATCAGTCGA 57.402 39.130 0.00 0.00 0.00 4.20
2255 2504 5.400066 TGAGTTATCCACAATCAGTCGAA 57.600 39.130 0.00 0.00 0.00 3.71
2256 2505 5.410924 TGAGTTATCCACAATCAGTCGAAG 58.589 41.667 0.00 0.00 0.00 3.79
2257 2506 4.759782 AGTTATCCACAATCAGTCGAAGG 58.240 43.478 0.00 0.00 0.00 3.46
2258 2507 4.466370 AGTTATCCACAATCAGTCGAAGGA 59.534 41.667 0.00 0.00 0.00 3.36
2259 2508 5.129485 AGTTATCCACAATCAGTCGAAGGAT 59.871 40.000 0.00 0.00 38.00 3.24
2260 2509 3.981071 TCCACAATCAGTCGAAGGATT 57.019 42.857 6.92 6.92 34.19 3.01
2261 2510 5.614324 ATCCACAATCAGTCGAAGGATTA 57.386 39.130 11.24 0.00 32.71 1.75
2262 2511 5.011090 TCCACAATCAGTCGAAGGATTAG 57.989 43.478 11.24 9.10 32.71 1.73
2263 2512 4.709886 TCCACAATCAGTCGAAGGATTAGA 59.290 41.667 11.24 7.31 32.71 2.10
2264 2513 5.186992 TCCACAATCAGTCGAAGGATTAGAA 59.813 40.000 11.24 0.00 29.60 2.10
2265 2514 5.874810 CCACAATCAGTCGAAGGATTAGAAA 59.125 40.000 11.24 0.00 29.60 2.52
2266 2515 6.183360 CCACAATCAGTCGAAGGATTAGAAAC 60.183 42.308 11.24 0.00 29.60 2.78
2267 2516 6.591834 CACAATCAGTCGAAGGATTAGAAACT 59.408 38.462 11.24 0.00 29.60 2.66
2268 2517 7.118390 CACAATCAGTCGAAGGATTAGAAACTT 59.882 37.037 11.24 0.00 29.60 2.66
2269 2518 7.661847 ACAATCAGTCGAAGGATTAGAAACTTT 59.338 33.333 11.24 0.00 29.60 2.66
2270 2519 8.507249 CAATCAGTCGAAGGATTAGAAACTTTT 58.493 33.333 11.24 0.00 29.60 2.27
2271 2520 7.421530 TCAGTCGAAGGATTAGAAACTTTTG 57.578 36.000 0.00 0.00 29.60 2.44
2272 2521 6.990349 TCAGTCGAAGGATTAGAAACTTTTGT 59.010 34.615 0.00 0.00 29.60 2.83
2273 2522 7.042051 TCAGTCGAAGGATTAGAAACTTTTGTG 60.042 37.037 0.00 0.00 29.60 3.33
2274 2523 6.990349 AGTCGAAGGATTAGAAACTTTTGTGA 59.010 34.615 0.00 0.00 29.60 3.58
2275 2524 7.041984 AGTCGAAGGATTAGAAACTTTTGTGAC 60.042 37.037 0.00 0.00 29.60 3.67
2276 2525 6.990349 TCGAAGGATTAGAAACTTTTGTGACT 59.010 34.615 0.00 0.00 0.00 3.41
2277 2526 7.497909 TCGAAGGATTAGAAACTTTTGTGACTT 59.502 33.333 0.00 0.00 0.00 3.01
2278 2527 8.770828 CGAAGGATTAGAAACTTTTGTGACTTA 58.229 33.333 0.00 0.00 0.00 2.24
2279 2528 9.880064 GAAGGATTAGAAACTTTTGTGACTTAC 57.120 33.333 0.00 0.00 0.00 2.34
2280 2529 8.084590 AGGATTAGAAACTTTTGTGACTTACG 57.915 34.615 0.00 0.00 0.00 3.18
2281 2530 7.929785 AGGATTAGAAACTTTTGTGACTTACGA 59.070 33.333 0.00 0.00 0.00 3.43
2282 2531 8.008279 GGATTAGAAACTTTTGTGACTTACGAC 58.992 37.037 0.00 0.00 0.00 4.34
2283 2532 5.385396 AGAAACTTTTGTGACTTACGACG 57.615 39.130 0.00 0.00 0.00 5.12
2284 2533 4.269363 AGAAACTTTTGTGACTTACGACGG 59.731 41.667 0.00 0.00 0.00 4.79
2285 2534 1.862827 ACTTTTGTGACTTACGACGGC 59.137 47.619 0.00 0.00 0.00 5.68
2286 2535 1.862201 CTTTTGTGACTTACGACGGCA 59.138 47.619 0.00 0.00 0.00 5.69
2287 2536 1.493772 TTTGTGACTTACGACGGCAG 58.506 50.000 0.00 0.00 0.00 4.85
2288 2537 0.386476 TTGTGACTTACGACGGCAGT 59.614 50.000 0.00 0.00 0.00 4.40
2289 2538 1.237533 TGTGACTTACGACGGCAGTA 58.762 50.000 0.00 0.00 0.00 2.74
2290 2539 1.814394 TGTGACTTACGACGGCAGTAT 59.186 47.619 0.00 0.00 0.00 2.12
2291 2540 2.229543 TGTGACTTACGACGGCAGTATT 59.770 45.455 0.00 0.00 0.00 1.89
2292 2541 3.248266 GTGACTTACGACGGCAGTATTT 58.752 45.455 0.00 0.00 0.00 1.40
2293 2542 3.676646 GTGACTTACGACGGCAGTATTTT 59.323 43.478 0.00 0.00 0.00 1.82
2294 2543 4.151157 GTGACTTACGACGGCAGTATTTTT 59.849 41.667 0.00 0.00 0.00 1.94
2314 2563 6.647212 TTTTTGCGTCTGTATGACTATCTG 57.353 37.500 0.00 0.00 43.25 2.90
2315 2564 4.983671 TTGCGTCTGTATGACTATCTGT 57.016 40.909 0.00 0.00 43.25 3.41
2316 2565 4.292977 TGCGTCTGTATGACTATCTGTG 57.707 45.455 0.00 0.00 43.25 3.66
2317 2566 3.046390 GCGTCTGTATGACTATCTGTGC 58.954 50.000 0.00 0.00 43.25 4.57
2318 2567 3.243234 GCGTCTGTATGACTATCTGTGCT 60.243 47.826 0.00 0.00 43.25 4.40
2319 2568 4.286101 CGTCTGTATGACTATCTGTGCTG 58.714 47.826 0.00 0.00 43.25 4.41
2320 2569 4.201960 CGTCTGTATGACTATCTGTGCTGT 60.202 45.833 0.00 0.00 43.25 4.40
2321 2570 5.655488 GTCTGTATGACTATCTGTGCTGTT 58.345 41.667 0.00 0.00 42.21 3.16
2322 2571 5.746245 GTCTGTATGACTATCTGTGCTGTTC 59.254 44.000 0.00 0.00 42.21 3.18
2323 2572 5.654209 TCTGTATGACTATCTGTGCTGTTCT 59.346 40.000 0.00 0.00 0.00 3.01
2324 2573 5.654497 TGTATGACTATCTGTGCTGTTCTG 58.346 41.667 0.00 0.00 0.00 3.02
2325 2574 4.815533 ATGACTATCTGTGCTGTTCTGT 57.184 40.909 0.00 0.00 0.00 3.41
2326 2575 5.921962 ATGACTATCTGTGCTGTTCTGTA 57.078 39.130 0.00 0.00 0.00 2.74
2327 2576 5.722021 TGACTATCTGTGCTGTTCTGTAA 57.278 39.130 0.00 0.00 0.00 2.41
2328 2577 6.286240 TGACTATCTGTGCTGTTCTGTAAT 57.714 37.500 0.00 0.00 0.00 1.89
2329 2578 7.404671 TGACTATCTGTGCTGTTCTGTAATA 57.595 36.000 0.00 0.00 0.00 0.98
2330 2579 7.258441 TGACTATCTGTGCTGTTCTGTAATAC 58.742 38.462 0.00 0.00 0.00 1.89
2331 2580 6.574350 ACTATCTGTGCTGTTCTGTAATACC 58.426 40.000 0.00 0.00 0.00 2.73
2332 2581 4.882842 TCTGTGCTGTTCTGTAATACCA 57.117 40.909 0.00 0.00 0.00 3.25
2333 2582 4.566004 TCTGTGCTGTTCTGTAATACCAC 58.434 43.478 0.00 0.00 0.00 4.16
2334 2583 4.283467 TCTGTGCTGTTCTGTAATACCACT 59.717 41.667 0.00 0.00 0.00 4.00
2335 2584 5.479027 TCTGTGCTGTTCTGTAATACCACTA 59.521 40.000 0.00 0.00 0.00 2.74
2336 2585 5.720202 TGTGCTGTTCTGTAATACCACTAG 58.280 41.667 0.00 0.00 0.00 2.57
2337 2586 4.567159 GTGCTGTTCTGTAATACCACTAGC 59.433 45.833 0.00 0.00 0.00 3.42
2338 2587 4.120589 GCTGTTCTGTAATACCACTAGCC 58.879 47.826 0.00 0.00 0.00 3.93
2339 2588 4.382685 GCTGTTCTGTAATACCACTAGCCA 60.383 45.833 0.00 0.00 0.00 4.75
2340 2589 5.685075 GCTGTTCTGTAATACCACTAGCCAT 60.685 44.000 0.00 0.00 0.00 4.40
2341 2590 6.308015 TGTTCTGTAATACCACTAGCCATT 57.692 37.500 0.00 0.00 0.00 3.16
2342 2591 7.426606 TGTTCTGTAATACCACTAGCCATTA 57.573 36.000 0.00 0.00 0.00 1.90
2343 2592 7.497595 TGTTCTGTAATACCACTAGCCATTAG 58.502 38.462 0.00 0.00 35.39 1.73
2344 2593 7.125204 TGTTCTGTAATACCACTAGCCATTAGT 59.875 37.037 0.00 0.00 43.46 2.24
2345 2594 8.636213 GTTCTGTAATACCACTAGCCATTAGTA 58.364 37.037 0.00 0.00 40.68 1.82
2346 2595 8.174733 TCTGTAATACCACTAGCCATTAGTAC 57.825 38.462 0.00 0.00 40.68 2.73
2347 2596 6.973843 TGTAATACCACTAGCCATTAGTACG 58.026 40.000 0.00 0.00 40.68 3.67
2348 2597 2.884894 ACCACTAGCCATTAGTACGC 57.115 50.000 0.00 0.00 40.68 4.42
2349 2598 2.104967 ACCACTAGCCATTAGTACGCA 58.895 47.619 0.00 0.00 40.68 5.24
2350 2599 2.159142 ACCACTAGCCATTAGTACGCAC 60.159 50.000 0.00 0.00 40.68 5.34
2351 2600 2.159156 CCACTAGCCATTAGTACGCACA 60.159 50.000 0.00 0.00 40.68 4.57
2352 2601 3.517602 CACTAGCCATTAGTACGCACAA 58.482 45.455 0.00 0.00 40.68 3.33
2353 2602 3.551890 CACTAGCCATTAGTACGCACAAG 59.448 47.826 0.00 0.00 40.68 3.16
2354 2603 2.024176 AGCCATTAGTACGCACAAGG 57.976 50.000 0.00 0.00 0.00 3.61
2355 2604 1.278127 AGCCATTAGTACGCACAAGGT 59.722 47.619 0.00 0.00 0.00 3.50
2356 2605 2.498481 AGCCATTAGTACGCACAAGGTA 59.502 45.455 0.00 0.00 0.00 3.08
2357 2606 2.864343 GCCATTAGTACGCACAAGGTAG 59.136 50.000 0.00 0.00 0.00 3.18
2358 2607 3.429822 GCCATTAGTACGCACAAGGTAGA 60.430 47.826 0.00 0.00 0.00 2.59
2359 2608 4.751060 CCATTAGTACGCACAAGGTAGAA 58.249 43.478 0.00 0.00 0.00 2.10
2360 2609 4.804139 CCATTAGTACGCACAAGGTAGAAG 59.196 45.833 0.00 0.00 0.00 2.85
2361 2610 2.365408 AGTACGCACAAGGTAGAAGC 57.635 50.000 0.00 0.00 0.00 3.86
2362 2611 1.616865 AGTACGCACAAGGTAGAAGCA 59.383 47.619 0.00 0.00 0.00 3.91
2363 2612 1.993370 GTACGCACAAGGTAGAAGCAG 59.007 52.381 0.00 0.00 0.00 4.24
2364 2613 0.393077 ACGCACAAGGTAGAAGCAGT 59.607 50.000 0.00 0.00 0.00 4.40
2365 2614 0.792640 CGCACAAGGTAGAAGCAGTG 59.207 55.000 0.00 0.00 0.00 3.66
2366 2615 1.160137 GCACAAGGTAGAAGCAGTGG 58.840 55.000 0.00 0.00 0.00 4.00
2367 2616 1.160137 CACAAGGTAGAAGCAGTGGC 58.840 55.000 0.00 0.00 41.61 5.01
2390 2639 4.666253 CACAGGGTGGCCAGGGTG 62.666 72.222 5.11 8.75 0.00 4.61
2396 2645 3.661648 GTGGCCAGGGTGGTCCAT 61.662 66.667 5.11 0.00 42.76 3.41
2397 2646 3.660571 TGGCCAGGGTGGTCCATG 61.661 66.667 0.00 0.00 42.76 3.66
2410 2659 2.613696 CCATGGACCACCCTGGGA 60.614 66.667 22.23 0.00 44.62 4.37
2411 2660 2.008723 CCATGGACCACCCTGGGAT 61.009 63.158 22.23 3.91 44.62 3.85
2412 2661 1.583784 CCATGGACCACCCTGGGATT 61.584 60.000 22.23 1.97 44.62 3.01
2413 2662 0.336048 CATGGACCACCCTGGGATTT 59.664 55.000 22.23 1.55 43.37 2.17
2414 2663 0.336048 ATGGACCACCCTGGGATTTG 59.664 55.000 22.23 7.35 43.37 2.32
2415 2664 1.000359 GGACCACCCTGGGATTTGG 60.000 63.158 22.23 19.20 43.37 3.28
2416 2665 1.682344 GACCACCCTGGGATTTGGC 60.682 63.158 22.23 9.32 43.37 4.52
2417 2666 2.364186 CCACCCTGGGATTTGGCC 60.364 66.667 22.23 0.00 32.67 5.36
2431 2680 4.147587 GGCCCACCATCAGCCCAT 62.148 66.667 0.00 0.00 41.00 4.00
2432 2681 2.836360 GCCCACCATCAGCCCATG 60.836 66.667 0.00 0.00 0.00 3.66
2433 2682 3.009275 CCCACCATCAGCCCATGA 58.991 61.111 0.00 0.00 43.70 3.07
2434 2683 1.152819 CCCACCATCAGCCCATGAG 60.153 63.158 0.00 0.00 42.53 2.90
2435 2684 1.611419 CCACCATCAGCCCATGAGT 59.389 57.895 0.00 0.00 42.53 3.41
2436 2685 0.839277 CCACCATCAGCCCATGAGTA 59.161 55.000 0.00 0.00 42.53 2.59
2437 2686 1.212688 CCACCATCAGCCCATGAGTAA 59.787 52.381 0.00 0.00 42.53 2.24
2438 2687 2.158564 CCACCATCAGCCCATGAGTAAT 60.159 50.000 0.00 0.00 42.53 1.89
2439 2688 3.072915 CCACCATCAGCCCATGAGTAATA 59.927 47.826 0.00 0.00 42.53 0.98
2440 2689 4.263639 CCACCATCAGCCCATGAGTAATAT 60.264 45.833 0.00 0.00 42.53 1.28
2441 2690 5.319453 CACCATCAGCCCATGAGTAATATT 58.681 41.667 0.00 0.00 42.53 1.28
2442 2691 5.771666 CACCATCAGCCCATGAGTAATATTT 59.228 40.000 0.00 0.00 42.53 1.40
2443 2692 6.266103 CACCATCAGCCCATGAGTAATATTTT 59.734 38.462 0.00 0.00 42.53 1.82
2444 2693 6.840705 ACCATCAGCCCATGAGTAATATTTTT 59.159 34.615 0.00 0.00 42.53 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.569355 ACACTGATATGTGGGTGAAAATCA 58.431 37.500 0.00 0.00 41.84 2.57
50 51 8.261522 GGGATCTAAAACATTAGAGAGAACACT 58.738 37.037 4.78 0.00 37.01 3.55
59 60 5.587388 ACGACGGGATCTAAAACATTAGA 57.413 39.130 0.00 1.16 37.87 2.10
60 61 5.006358 CCAACGACGGGATCTAAAACATTAG 59.994 44.000 0.00 0.00 0.00 1.73
61 62 4.871557 CCAACGACGGGATCTAAAACATTA 59.128 41.667 0.00 0.00 0.00 1.90
62 63 3.687698 CCAACGACGGGATCTAAAACATT 59.312 43.478 0.00 0.00 0.00 2.71
63 64 3.267483 CCAACGACGGGATCTAAAACAT 58.733 45.455 0.00 0.00 0.00 2.71
66 74 3.405823 AACCAACGACGGGATCTAAAA 57.594 42.857 0.00 0.00 0.00 1.52
69 77 3.355378 TCTTAACCAACGACGGGATCTA 58.645 45.455 0.00 0.00 0.00 1.98
76 84 2.587956 TCGTGATCTTAACCAACGACG 58.412 47.619 0.00 0.00 0.00 5.12
77 85 4.171005 TCATCGTGATCTTAACCAACGAC 58.829 43.478 4.56 0.00 0.00 4.34
79 87 5.524511 TTTCATCGTGATCTTAACCAACG 57.475 39.130 0.00 0.00 0.00 4.10
94 102 5.574055 CACACCCTTTTGATTGATTTCATCG 59.426 40.000 0.00 0.00 0.00 3.84
96 104 5.240121 GCACACCCTTTTGATTGATTTCAT 58.760 37.500 0.00 0.00 0.00 2.57
135 143 5.417894 TGTTGTAGTCGTAGGATTGTCAGAT 59.582 40.000 0.00 0.00 0.00 2.90
138 146 5.654603 ATGTTGTAGTCGTAGGATTGTCA 57.345 39.130 0.00 0.00 0.00 3.58
139 147 7.024340 TCTATGTTGTAGTCGTAGGATTGTC 57.976 40.000 0.00 0.00 0.00 3.18
149 157 9.630098 TTACCTTTAGTTTCTATGTTGTAGTCG 57.370 33.333 0.00 0.00 0.00 4.18
177 186 9.447040 CATGATGAGTCTAAATTTGCATTAGTG 57.553 33.333 0.00 0.00 33.17 2.74
202 211 4.838152 GAGGCCTCCGAATGCGCA 62.838 66.667 23.19 14.96 35.83 6.09
236 246 1.797211 CTCCTATCGCCGTGACCTCC 61.797 65.000 0.00 0.00 0.00 4.30
246 256 3.942439 GGGGTGGGCTCCTATCGC 61.942 72.222 0.00 0.00 30.72 4.58
272 282 1.913951 TACTAGTGGCGTCCCCTCGA 61.914 60.000 5.39 0.00 32.31 4.04
337 348 4.512914 GGCAGGACATGAGCCCCC 62.513 72.222 0.00 0.56 42.58 5.40
361 374 1.582968 GTACCCTCGCGTTGACTCA 59.417 57.895 5.77 0.00 0.00 3.41
367 380 0.896940 TCTGAAGGTACCCTCGCGTT 60.897 55.000 8.74 0.00 30.89 4.84
368 381 1.303888 TCTGAAGGTACCCTCGCGT 60.304 57.895 8.74 0.00 30.89 6.01
378 391 3.304829 GGCTAAGGAGATCTCTGAAGGT 58.695 50.000 21.81 4.52 0.00 3.50
385 398 1.548269 CATCGGGGCTAAGGAGATCTC 59.452 57.143 14.75 14.75 0.00 2.75
406 419 1.832883 TGCTTGGAACATATTGCGGT 58.167 45.000 0.00 0.00 39.30 5.68
408 421 2.164219 ACCTTGCTTGGAACATATTGCG 59.836 45.455 2.67 0.00 39.30 4.85
414 427 1.133513 TGTGGACCTTGCTTGGAACAT 60.134 47.619 2.67 0.00 39.30 2.71
425 438 1.472662 CCAGGACGAGTGTGGACCTT 61.473 60.000 0.00 0.00 32.60 3.50
429 442 0.757561 TGTTCCAGGACGAGTGTGGA 60.758 55.000 0.00 0.98 38.65 4.02
433 446 1.745890 TGGTGTTCCAGGACGAGTG 59.254 57.895 0.00 0.00 39.03 3.51
434 447 4.288234 TGGTGTTCCAGGACGAGT 57.712 55.556 0.00 0.00 39.03 4.18
441 454 6.893308 ACATACGGTGTGATGGTGTTCCAG 62.893 50.000 12.04 0.00 42.83 3.86
442 455 5.135555 ACATACGGTGTGATGGTGTTCCA 62.136 47.826 12.04 0.00 43.35 3.53
443 456 2.006888 CATACGGTGTGATGGTGTTCC 58.993 52.381 0.00 0.00 0.00 3.62
470 483 3.055094 TCCCCTAAAGCACTTGTCTGATC 60.055 47.826 0.00 0.00 0.00 2.92
489 502 2.100916 TCTCGATCCTCAAACGATTCCC 59.899 50.000 0.00 0.00 35.58 3.97
499 512 2.290071 GGTTTTGGGTTCTCGATCCTCA 60.290 50.000 0.00 0.00 0.00 3.86
505 518 0.469070 TTCGGGTTTTGGGTTCTCGA 59.531 50.000 0.00 0.00 0.00 4.04
506 519 1.199097 CATTCGGGTTTTGGGTTCTCG 59.801 52.381 0.00 0.00 0.00 4.04
555 568 3.725267 ACTTCCCCTCCTTCACCTAAAAA 59.275 43.478 0.00 0.00 0.00 1.94
556 569 3.332968 ACTTCCCCTCCTTCACCTAAAA 58.667 45.455 0.00 0.00 0.00 1.52
557 570 2.999928 ACTTCCCCTCCTTCACCTAAA 58.000 47.619 0.00 0.00 0.00 1.85
558 571 2.735259 ACTTCCCCTCCTTCACCTAA 57.265 50.000 0.00 0.00 0.00 2.69
559 572 2.292719 GGTACTTCCCCTCCTTCACCTA 60.293 54.545 0.00 0.00 0.00 3.08
560 573 1.555058 GGTACTTCCCCTCCTTCACCT 60.555 57.143 0.00 0.00 0.00 4.00
561 574 0.910338 GGTACTTCCCCTCCTTCACC 59.090 60.000 0.00 0.00 0.00 4.02
562 575 1.555533 CAGGTACTTCCCCTCCTTCAC 59.444 57.143 0.00 0.00 34.60 3.18
563 576 1.435563 TCAGGTACTTCCCCTCCTTCA 59.564 52.381 0.00 0.00 34.60 3.02
564 577 2.249309 TCAGGTACTTCCCCTCCTTC 57.751 55.000 0.00 0.00 34.60 3.46
565 578 2.735259 TTCAGGTACTTCCCCTCCTT 57.265 50.000 0.00 0.00 34.60 3.36
566 579 2.765502 GATTCAGGTACTTCCCCTCCT 58.234 52.381 0.00 0.00 34.60 3.69
567 580 1.413077 CGATTCAGGTACTTCCCCTCC 59.587 57.143 0.00 0.00 34.60 4.30
568 581 2.362717 CTCGATTCAGGTACTTCCCCTC 59.637 54.545 0.00 0.00 34.60 4.30
569 582 2.389715 CTCGATTCAGGTACTTCCCCT 58.610 52.381 0.00 0.00 34.60 4.79
570 583 1.413077 CCTCGATTCAGGTACTTCCCC 59.587 57.143 0.00 0.00 34.60 4.81
571 584 2.108970 ACCTCGATTCAGGTACTTCCC 58.891 52.381 6.14 0.00 45.71 3.97
572 585 3.056035 ACAACCTCGATTCAGGTACTTCC 60.056 47.826 7.83 0.00 46.97 3.46
573 586 4.189639 ACAACCTCGATTCAGGTACTTC 57.810 45.455 7.83 0.00 46.97 3.01
574 587 5.014858 TCTACAACCTCGATTCAGGTACTT 58.985 41.667 7.83 0.00 46.97 2.24
575 588 4.398673 GTCTACAACCTCGATTCAGGTACT 59.601 45.833 7.83 1.43 46.97 2.73
576 589 4.398673 AGTCTACAACCTCGATTCAGGTAC 59.601 45.833 7.83 0.00 46.97 3.34
613 632 4.778143 GTGGCCTGGCGGTAGTGG 62.778 72.222 13.40 0.00 0.00 4.00
615 634 3.246112 TTGTGGCCTGGCGGTAGT 61.246 61.111 13.40 0.00 0.00 2.73
617 636 1.481901 TTACTTGTGGCCTGGCGGTA 61.482 55.000 13.40 7.64 0.00 4.02
618 637 2.824880 TTACTTGTGGCCTGGCGGT 61.825 57.895 13.40 8.57 0.00 5.68
619 638 2.033448 TTACTTGTGGCCTGGCGG 59.967 61.111 13.40 2.87 0.00 6.13
620 639 0.960364 ATGTTACTTGTGGCCTGGCG 60.960 55.000 13.40 0.22 0.00 5.69
621 640 2.017049 CTATGTTACTTGTGGCCTGGC 58.983 52.381 11.05 11.05 0.00 4.85
622 641 3.350219 ACTATGTTACTTGTGGCCTGG 57.650 47.619 3.32 0.00 0.00 4.45
623 642 7.391148 AAAATACTATGTTACTTGTGGCCTG 57.609 36.000 3.32 0.00 0.00 4.85
650 670 2.209838 ATGTTACTCATGCGACTCGG 57.790 50.000 0.00 0.00 35.19 4.63
651 671 2.923655 ACAATGTTACTCATGCGACTCG 59.076 45.455 0.00 0.00 36.81 4.18
653 673 3.120199 GCAACAATGTTACTCATGCGACT 60.120 43.478 0.00 0.00 36.81 4.18
660 680 4.251543 TCTCTCGCAACAATGTTACTCA 57.748 40.909 0.00 0.00 0.00 3.41
670 690 4.720649 AGCTATTACTTCTCTCGCAACA 57.279 40.909 0.00 0.00 0.00 3.33
700 726 5.355071 CGGATGCAATGCCATATACTGTATT 59.645 40.000 5.52 0.00 0.00 1.89
704 731 3.337358 TCGGATGCAATGCCATATACTG 58.663 45.455 1.53 0.00 0.00 2.74
707 734 5.534278 TCTTTTTCGGATGCAATGCCATATA 59.466 36.000 1.53 0.00 0.00 0.86
708 735 4.341806 TCTTTTTCGGATGCAATGCCATAT 59.658 37.500 1.53 0.00 0.00 1.78
709 736 3.698539 TCTTTTTCGGATGCAATGCCATA 59.301 39.130 1.53 0.00 0.00 2.74
710 737 2.496871 TCTTTTTCGGATGCAATGCCAT 59.503 40.909 1.53 0.00 0.00 4.40
711 738 1.891811 TCTTTTTCGGATGCAATGCCA 59.108 42.857 1.53 0.00 0.00 4.92
712 739 2.652941 TCTTTTTCGGATGCAATGCC 57.347 45.000 1.53 0.00 0.00 4.40
713 740 5.101628 TGTATTCTTTTTCGGATGCAATGC 58.898 37.500 0.00 0.00 0.00 3.56
714 741 7.579589 TTTGTATTCTTTTTCGGATGCAATG 57.420 32.000 0.00 0.00 0.00 2.82
715 742 7.331687 CCTTTTGTATTCTTTTTCGGATGCAAT 59.668 33.333 0.00 0.00 0.00 3.56
732 759 9.174166 CATAAGGCTTTACTACACCTTTTGTAT 57.826 33.333 4.45 0.00 42.45 2.29
769 837 2.598192 CAGTTTCGGCACACAAAAACAG 59.402 45.455 0.00 0.00 34.76 3.16
775 843 0.528017 TTTGCAGTTTCGGCACACAA 59.472 45.000 0.00 0.00 41.75 3.33
780 848 0.383949 GGAACTTTGCAGTTTCGGCA 59.616 50.000 0.00 0.00 43.79 5.69
788 856 2.956987 CTGGCGGGAACTTTGCAG 59.043 61.111 0.00 0.00 0.00 4.41
922 992 2.295349 GGAATTGCTGATGCGAATGGAT 59.705 45.455 0.00 0.00 43.34 3.41
967 1043 2.766229 GGAGGTGGGAGAGGGAGC 60.766 72.222 0.00 0.00 0.00 4.70
1465 1557 0.315706 GCGACGCATTCAGATTCAGC 60.316 55.000 16.42 0.00 0.00 4.26
1549 1709 2.283298 AGCGTTGGCAATCATCTAGTG 58.717 47.619 1.92 0.00 43.41 2.74
1550 1710 2.698855 AGCGTTGGCAATCATCTAGT 57.301 45.000 1.92 0.00 43.41 2.57
1551 1711 3.127548 ACAAAGCGTTGGCAATCATCTAG 59.872 43.478 16.80 0.00 43.41 2.43
1577 1752 2.170187 TGCAAAAGCAACAACCAAGGAT 59.830 40.909 0.00 0.00 0.00 3.24
1600 1791 8.310382 ACTTCCACATTCTACATAGATATCAGC 58.690 37.037 5.32 0.00 31.40 4.26
1612 1803 4.578928 ACAACCACAACTTCCACATTCTAC 59.421 41.667 0.00 0.00 0.00 2.59
1621 1816 2.482721 CGGATACACAACCACAACTTCC 59.517 50.000 0.00 0.00 0.00 3.46
1623 1818 3.202829 ACGGATACACAACCACAACTT 57.797 42.857 0.00 0.00 0.00 2.66
1627 1823 2.832733 TGGATACGGATACACAACCACA 59.167 45.455 0.00 0.00 42.51 4.17
1634 1830 4.037565 TCATCACTGTGGATACGGATACAC 59.962 45.833 16.75 16.75 45.99 2.90
1636 1832 4.848562 TCATCACTGTGGATACGGATAC 57.151 45.455 8.11 0.00 42.51 2.24
1648 1844 5.182570 CCAACATCTGTCAAATCATCACTGT 59.817 40.000 0.00 0.00 0.00 3.55
1664 1861 5.936956 CAGAAGAGTAGAAAAGCCAACATCT 59.063 40.000 0.00 0.00 0.00 2.90
1706 1903 2.485038 GACAAAATGCAAATTGGCCAGG 59.515 45.455 5.11 0.00 0.00 4.45
1708 1905 3.139850 CAGACAAAATGCAAATTGGCCA 58.860 40.909 15.01 0.00 35.04 5.36
1728 1925 2.231235 TCAATCAGCACTAGAACTCGCA 59.769 45.455 0.00 0.00 0.00 5.10
1734 1931 4.736126 TTCCGATCAATCAGCACTAGAA 57.264 40.909 0.00 0.00 0.00 2.10
1747 1944 3.333029 TCTCAGTTTGCATTCCGATCA 57.667 42.857 0.00 0.00 0.00 2.92
1843 2070 2.086869 GGCAGAGATTAGTGCAAGCAA 58.913 47.619 0.00 0.00 41.75 3.91
1924 2156 0.878523 TCGTGCAGAAACGGAACCTG 60.879 55.000 0.00 0.00 43.73 4.00
1979 2211 4.883585 ACAAGAACAAGACTCAATTCTGCA 59.116 37.500 0.00 0.00 31.82 4.41
2006 2250 2.230660 GATGCTAATTACTGGGGTGCC 58.769 52.381 0.00 0.00 0.00 5.01
2007 2251 1.873591 CGATGCTAATTACTGGGGTGC 59.126 52.381 0.00 0.00 0.00 5.01
2045 2290 5.627499 TTGCCAATTGACTGACACTAATC 57.373 39.130 7.12 0.00 0.00 1.75
2065 2310 1.170919 AGCTGCTGCAGACTGGTTTG 61.171 55.000 32.30 4.57 42.74 2.93
2092 2341 1.740025 AGAGCGAGGCAATAAAACAGC 59.260 47.619 0.00 0.00 0.00 4.40
2099 2348 3.541996 TCAATGAAGAGCGAGGCAATA 57.458 42.857 0.00 0.00 0.00 1.90
2153 2402 0.035820 TACCTTCCGTTCCATGGCAC 60.036 55.000 6.96 5.46 0.00 5.01
2154 2403 0.916086 ATACCTTCCGTTCCATGGCA 59.084 50.000 6.96 0.00 0.00 4.92
2155 2404 1.308998 CATACCTTCCGTTCCATGGC 58.691 55.000 6.96 0.00 0.00 4.40
2156 2405 1.134098 AGCATACCTTCCGTTCCATGG 60.134 52.381 4.97 4.97 0.00 3.66
2157 2406 2.158900 AGAGCATACCTTCCGTTCCATG 60.159 50.000 0.00 0.00 0.00 3.66
2158 2407 2.119495 AGAGCATACCTTCCGTTCCAT 58.881 47.619 0.00 0.00 0.00 3.41
2159 2408 1.568504 AGAGCATACCTTCCGTTCCA 58.431 50.000 0.00 0.00 0.00 3.53
2160 2409 2.280628 CAAGAGCATACCTTCCGTTCC 58.719 52.381 0.00 0.00 0.00 3.62
2161 2410 2.930682 GACAAGAGCATACCTTCCGTTC 59.069 50.000 0.00 0.00 0.00 3.95
2162 2411 2.354805 GGACAAGAGCATACCTTCCGTT 60.355 50.000 0.00 0.00 0.00 4.44
2163 2412 1.207329 GGACAAGAGCATACCTTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
2164 2413 1.482593 AGGACAAGAGCATACCTTCCG 59.517 52.381 0.00 0.00 0.00 4.30
2165 2414 2.237392 ACAGGACAAGAGCATACCTTCC 59.763 50.000 0.00 0.00 0.00 3.46
2166 2415 3.265791 CACAGGACAAGAGCATACCTTC 58.734 50.000 0.00 0.00 0.00 3.46
2167 2416 2.026822 CCACAGGACAAGAGCATACCTT 60.027 50.000 0.00 0.00 0.00 3.50
2168 2417 1.556911 CCACAGGACAAGAGCATACCT 59.443 52.381 0.00 0.00 0.00 3.08
2169 2418 2.014068 GCCACAGGACAAGAGCATACC 61.014 57.143 0.00 0.00 0.00 2.73
2170 2419 1.373570 GCCACAGGACAAGAGCATAC 58.626 55.000 0.00 0.00 0.00 2.39
2171 2420 0.253044 GGCCACAGGACAAGAGCATA 59.747 55.000 0.00 0.00 0.00 3.14
2172 2421 1.001641 GGCCACAGGACAAGAGCAT 60.002 57.895 0.00 0.00 0.00 3.79
2173 2422 2.431683 GGCCACAGGACAAGAGCA 59.568 61.111 0.00 0.00 0.00 4.26
2174 2423 2.743928 CGGCCACAGGACAAGAGC 60.744 66.667 2.24 0.00 0.00 4.09
2175 2424 2.046892 CCGGCCACAGGACAAGAG 60.047 66.667 2.24 0.00 0.00 2.85
2176 2425 2.525629 TCCGGCCACAGGACAAGA 60.526 61.111 2.24 0.00 31.86 3.02
2177 2426 2.046892 CTCCGGCCACAGGACAAG 60.047 66.667 2.24 0.00 33.58 3.16
2178 2427 4.329545 GCTCCGGCCACAGGACAA 62.330 66.667 2.24 0.00 33.58 3.18
2180 2429 3.959991 GAAGCTCCGGCCACAGGAC 62.960 68.421 2.24 0.00 39.73 3.85
2181 2430 3.706373 GAAGCTCCGGCCACAGGA 61.706 66.667 2.24 0.00 39.73 3.86
2182 2431 3.965539 CTGAAGCTCCGGCCACAGG 62.966 68.421 2.24 0.00 37.95 4.00
2183 2432 2.435586 CTGAAGCTCCGGCCACAG 60.436 66.667 2.24 0.00 39.73 3.66
2184 2433 3.240134 GACTGAAGCTCCGGCCACA 62.240 63.158 2.24 0.00 39.73 4.17
2185 2434 2.435059 GACTGAAGCTCCGGCCAC 60.435 66.667 2.24 0.00 39.73 5.01
2186 2435 2.217038 AAGACTGAAGCTCCGGCCA 61.217 57.895 2.24 0.00 39.73 5.36
2187 2436 1.743252 CAAGACTGAAGCTCCGGCC 60.743 63.158 0.00 0.00 39.73 6.13
2188 2437 1.743252 CCAAGACTGAAGCTCCGGC 60.743 63.158 0.00 0.00 39.06 6.13
2189 2438 1.743252 GCCAAGACTGAAGCTCCGG 60.743 63.158 0.00 0.00 0.00 5.14
2190 2439 1.004560 TGCCAAGACTGAAGCTCCG 60.005 57.895 0.00 0.00 0.00 4.63
2191 2440 1.304509 GCTGCCAAGACTGAAGCTCC 61.305 60.000 0.00 0.00 32.34 4.70
2192 2441 0.604780 TGCTGCCAAGACTGAAGCTC 60.605 55.000 0.00 0.00 34.73 4.09
2193 2442 0.037877 ATGCTGCCAAGACTGAAGCT 59.962 50.000 0.00 0.00 34.73 3.74
2194 2443 0.450983 GATGCTGCCAAGACTGAAGC 59.549 55.000 0.00 0.00 34.41 3.86
2195 2444 0.725686 CGATGCTGCCAAGACTGAAG 59.274 55.000 0.00 0.00 0.00 3.02
2196 2445 0.035317 ACGATGCTGCCAAGACTGAA 59.965 50.000 0.00 0.00 0.00 3.02
2197 2446 0.671472 CACGATGCTGCCAAGACTGA 60.671 55.000 0.00 0.00 0.00 3.41
2198 2447 0.952497 ACACGATGCTGCCAAGACTG 60.952 55.000 0.00 0.00 0.00 3.51
2199 2448 0.952497 CACACGATGCTGCCAAGACT 60.952 55.000 0.00 0.00 0.00 3.24
2200 2449 1.499056 CACACGATGCTGCCAAGAC 59.501 57.895 0.00 0.00 0.00 3.01
2201 2450 3.970721 CACACGATGCTGCCAAGA 58.029 55.556 0.00 0.00 0.00 3.02
2210 2459 4.944962 TTCCTATTTTCAGCACACGATG 57.055 40.909 0.00 0.00 0.00 3.84
2211 2460 5.647658 TCATTTCCTATTTTCAGCACACGAT 59.352 36.000 0.00 0.00 0.00 3.73
2212 2461 5.000591 TCATTTCCTATTTTCAGCACACGA 58.999 37.500 0.00 0.00 0.00 4.35
2213 2462 5.106555 ACTCATTTCCTATTTTCAGCACACG 60.107 40.000 0.00 0.00 0.00 4.49
2214 2463 6.259550 ACTCATTTCCTATTTTCAGCACAC 57.740 37.500 0.00 0.00 0.00 3.82
2215 2464 6.899393 AACTCATTTCCTATTTTCAGCACA 57.101 33.333 0.00 0.00 0.00 4.57
2216 2465 8.131731 GGATAACTCATTTCCTATTTTCAGCAC 58.868 37.037 0.00 0.00 0.00 4.40
2217 2466 7.833682 TGGATAACTCATTTCCTATTTTCAGCA 59.166 33.333 0.00 0.00 0.00 4.41
2218 2467 8.131731 GTGGATAACTCATTTCCTATTTTCAGC 58.868 37.037 0.00 0.00 0.00 4.26
2219 2468 9.177608 TGTGGATAACTCATTTCCTATTTTCAG 57.822 33.333 0.00 0.00 0.00 3.02
2220 2469 9.527157 TTGTGGATAACTCATTTCCTATTTTCA 57.473 29.630 0.00 0.00 0.00 2.69
2223 2472 9.699410 TGATTGTGGATAACTCATTTCCTATTT 57.301 29.630 0.00 0.00 0.00 1.40
2224 2473 9.347240 CTGATTGTGGATAACTCATTTCCTATT 57.653 33.333 0.00 0.00 0.00 1.73
2225 2474 8.497745 ACTGATTGTGGATAACTCATTTCCTAT 58.502 33.333 0.00 0.00 0.00 2.57
2226 2475 7.861629 ACTGATTGTGGATAACTCATTTCCTA 58.138 34.615 0.00 0.00 0.00 2.94
2227 2476 6.725364 ACTGATTGTGGATAACTCATTTCCT 58.275 36.000 0.00 0.00 0.00 3.36
2228 2477 6.238211 CGACTGATTGTGGATAACTCATTTCC 60.238 42.308 0.00 0.00 0.00 3.13
2229 2478 6.535150 TCGACTGATTGTGGATAACTCATTTC 59.465 38.462 0.00 0.00 0.00 2.17
2230 2479 6.406370 TCGACTGATTGTGGATAACTCATTT 58.594 36.000 0.00 0.00 0.00 2.32
2231 2480 5.977635 TCGACTGATTGTGGATAACTCATT 58.022 37.500 0.00 0.00 0.00 2.57
2232 2481 5.598416 TCGACTGATTGTGGATAACTCAT 57.402 39.130 0.00 0.00 0.00 2.90
2233 2482 5.400066 TTCGACTGATTGTGGATAACTCA 57.600 39.130 0.00 0.00 33.51 3.41
2234 2483 4.806247 CCTTCGACTGATTGTGGATAACTC 59.194 45.833 0.00 0.00 33.51 3.01
2235 2484 4.466370 TCCTTCGACTGATTGTGGATAACT 59.534 41.667 0.00 0.00 33.51 2.24
2236 2485 4.755411 TCCTTCGACTGATTGTGGATAAC 58.245 43.478 0.00 0.00 33.51 1.89
2237 2486 5.614324 ATCCTTCGACTGATTGTGGATAA 57.386 39.130 0.00 0.00 33.51 1.75
2238 2487 5.614324 AATCCTTCGACTGATTGTGGATA 57.386 39.130 7.59 0.00 33.51 2.59
2239 2488 4.494091 AATCCTTCGACTGATTGTGGAT 57.506 40.909 7.59 0.00 33.51 3.41
2240 2489 3.981071 AATCCTTCGACTGATTGTGGA 57.019 42.857 7.59 0.00 30.28 4.02
2241 2490 5.011090 TCTAATCCTTCGACTGATTGTGG 57.989 43.478 15.47 8.18 33.46 4.17
2242 2491 6.591834 AGTTTCTAATCCTTCGACTGATTGTG 59.408 38.462 15.47 9.96 33.46 3.33
2243 2492 6.702329 AGTTTCTAATCCTTCGACTGATTGT 58.298 36.000 15.47 0.00 33.46 2.71
2244 2493 7.602517 AAGTTTCTAATCCTTCGACTGATTG 57.397 36.000 15.47 8.21 33.46 2.67
2245 2494 8.507249 CAAAAGTTTCTAATCCTTCGACTGATT 58.493 33.333 11.95 11.95 35.48 2.57
2246 2495 7.661847 ACAAAAGTTTCTAATCCTTCGACTGAT 59.338 33.333 0.00 0.00 0.00 2.90
2247 2496 6.990349 ACAAAAGTTTCTAATCCTTCGACTGA 59.010 34.615 0.00 0.00 0.00 3.41
2248 2497 7.042051 TCACAAAAGTTTCTAATCCTTCGACTG 60.042 37.037 0.00 0.00 0.00 3.51
2249 2498 6.990349 TCACAAAAGTTTCTAATCCTTCGACT 59.010 34.615 0.00 0.00 0.00 4.18
2250 2499 7.041984 AGTCACAAAAGTTTCTAATCCTTCGAC 60.042 37.037 0.00 0.00 0.00 4.20
2251 2500 6.990349 AGTCACAAAAGTTTCTAATCCTTCGA 59.010 34.615 0.00 0.00 0.00 3.71
2252 2501 7.190920 AGTCACAAAAGTTTCTAATCCTTCG 57.809 36.000 0.00 0.00 0.00 3.79
2253 2502 9.880064 GTAAGTCACAAAAGTTTCTAATCCTTC 57.120 33.333 0.00 0.00 0.00 3.46
2254 2503 8.557029 CGTAAGTCACAAAAGTTTCTAATCCTT 58.443 33.333 0.00 0.00 0.00 3.36
2255 2504 7.929785 TCGTAAGTCACAAAAGTTTCTAATCCT 59.070 33.333 0.00 0.00 39.48 3.24
2256 2505 8.008279 GTCGTAAGTCACAAAAGTTTCTAATCC 58.992 37.037 0.00 0.00 39.48 3.01
2257 2506 7.734726 CGTCGTAAGTCACAAAAGTTTCTAATC 59.265 37.037 0.00 0.00 39.48 1.75
2258 2507 7.306983 CCGTCGTAAGTCACAAAAGTTTCTAAT 60.307 37.037 0.00 0.00 39.48 1.73
2259 2508 6.019640 CCGTCGTAAGTCACAAAAGTTTCTAA 60.020 38.462 0.00 0.00 39.48 2.10
2260 2509 5.459762 CCGTCGTAAGTCACAAAAGTTTCTA 59.540 40.000 0.00 0.00 39.48 2.10
2261 2510 4.269363 CCGTCGTAAGTCACAAAAGTTTCT 59.731 41.667 0.00 0.00 39.48 2.52
2262 2511 4.511734 CCGTCGTAAGTCACAAAAGTTTC 58.488 43.478 0.00 0.00 39.48 2.78
2263 2512 3.242511 GCCGTCGTAAGTCACAAAAGTTT 60.243 43.478 0.00 0.00 39.48 2.66
2264 2513 2.286025 GCCGTCGTAAGTCACAAAAGTT 59.714 45.455 0.00 0.00 39.48 2.66
2265 2514 1.862827 GCCGTCGTAAGTCACAAAAGT 59.137 47.619 0.00 0.00 39.48 2.66
2266 2515 1.862201 TGCCGTCGTAAGTCACAAAAG 59.138 47.619 0.00 0.00 39.48 2.27
2267 2516 1.862201 CTGCCGTCGTAAGTCACAAAA 59.138 47.619 0.00 0.00 39.48 2.44
2268 2517 1.202440 ACTGCCGTCGTAAGTCACAAA 60.202 47.619 0.00 0.00 39.48 2.83
2269 2518 0.386476 ACTGCCGTCGTAAGTCACAA 59.614 50.000 0.00 0.00 39.48 3.33
2270 2519 1.237533 TACTGCCGTCGTAAGTCACA 58.762 50.000 0.74 0.00 39.48 3.58
2271 2520 2.556534 ATACTGCCGTCGTAAGTCAC 57.443 50.000 0.74 0.00 39.48 3.67
2272 2521 3.581024 AAATACTGCCGTCGTAAGTCA 57.419 42.857 0.74 0.00 39.48 3.41
2273 2522 4.916099 AAAAATACTGCCGTCGTAAGTC 57.084 40.909 0.74 0.00 39.48 3.01
2299 2548 5.654209 AGAACAGCACAGATAGTCATACAGA 59.346 40.000 0.00 0.00 0.00 3.41
2300 2549 5.747675 CAGAACAGCACAGATAGTCATACAG 59.252 44.000 0.00 0.00 0.00 2.74
2301 2550 5.185828 ACAGAACAGCACAGATAGTCATACA 59.814 40.000 0.00 0.00 0.00 2.29
2302 2551 5.655488 ACAGAACAGCACAGATAGTCATAC 58.345 41.667 0.00 0.00 0.00 2.39
2303 2552 5.921962 ACAGAACAGCACAGATAGTCATA 57.078 39.130 0.00 0.00 0.00 2.15
2304 2553 4.815533 ACAGAACAGCACAGATAGTCAT 57.184 40.909 0.00 0.00 0.00 3.06
2305 2554 5.722021 TTACAGAACAGCACAGATAGTCA 57.278 39.130 0.00 0.00 0.00 3.41
2306 2555 6.697892 GGTATTACAGAACAGCACAGATAGTC 59.302 42.308 0.00 0.00 0.00 2.59
2307 2556 6.154534 TGGTATTACAGAACAGCACAGATAGT 59.845 38.462 0.00 0.00 0.00 2.12
2308 2557 6.477033 GTGGTATTACAGAACAGCACAGATAG 59.523 42.308 0.00 0.00 38.82 2.08
2309 2558 6.154534 AGTGGTATTACAGAACAGCACAGATA 59.845 38.462 5.67 0.00 40.83 1.98
2310 2559 5.046304 AGTGGTATTACAGAACAGCACAGAT 60.046 40.000 5.67 0.00 40.83 2.90
2311 2560 4.283467 AGTGGTATTACAGAACAGCACAGA 59.717 41.667 5.67 0.00 40.83 3.41
2312 2561 4.569943 AGTGGTATTACAGAACAGCACAG 58.430 43.478 5.67 0.00 40.83 3.66
2313 2562 4.617253 AGTGGTATTACAGAACAGCACA 57.383 40.909 5.67 0.00 40.83 4.57
2314 2563 4.567159 GCTAGTGGTATTACAGAACAGCAC 59.433 45.833 0.00 0.00 39.16 4.40
2315 2564 4.382685 GGCTAGTGGTATTACAGAACAGCA 60.383 45.833 0.00 0.00 0.00 4.41
2316 2565 4.120589 GGCTAGTGGTATTACAGAACAGC 58.879 47.826 0.00 0.00 0.00 4.40
2317 2566 5.339008 TGGCTAGTGGTATTACAGAACAG 57.661 43.478 0.00 0.00 0.00 3.16
2318 2567 5.950544 ATGGCTAGTGGTATTACAGAACA 57.049 39.130 0.00 0.00 0.00 3.18
2319 2568 7.498443 ACTAATGGCTAGTGGTATTACAGAAC 58.502 38.462 0.00 0.00 39.52 3.01
2320 2569 7.670605 ACTAATGGCTAGTGGTATTACAGAA 57.329 36.000 0.00 0.00 39.52 3.02
2321 2570 7.040892 CGTACTAATGGCTAGTGGTATTACAGA 60.041 40.741 0.00 0.00 41.20 3.41
2322 2571 7.082602 CGTACTAATGGCTAGTGGTATTACAG 58.917 42.308 0.00 0.00 41.20 2.74
2323 2572 6.515531 GCGTACTAATGGCTAGTGGTATTACA 60.516 42.308 0.00 0.00 41.20 2.41
2324 2573 5.860716 GCGTACTAATGGCTAGTGGTATTAC 59.139 44.000 0.00 0.00 41.20 1.89
2325 2574 5.535783 TGCGTACTAATGGCTAGTGGTATTA 59.464 40.000 0.00 0.00 41.20 0.98
2326 2575 4.342951 TGCGTACTAATGGCTAGTGGTATT 59.657 41.667 0.00 0.00 41.20 1.89
2327 2576 3.893200 TGCGTACTAATGGCTAGTGGTAT 59.107 43.478 0.00 0.00 41.20 2.73
2328 2577 3.067180 GTGCGTACTAATGGCTAGTGGTA 59.933 47.826 0.00 0.00 41.20 3.25
2329 2578 2.104967 TGCGTACTAATGGCTAGTGGT 58.895 47.619 0.00 0.00 41.20 4.16
2330 2579 2.159156 TGTGCGTACTAATGGCTAGTGG 60.159 50.000 4.97 0.00 41.20 4.00
2331 2580 3.159353 TGTGCGTACTAATGGCTAGTG 57.841 47.619 4.97 0.00 41.20 2.74
2332 2581 3.430374 CCTTGTGCGTACTAATGGCTAGT 60.430 47.826 4.97 0.00 43.58 2.57
2333 2582 3.123804 CCTTGTGCGTACTAATGGCTAG 58.876 50.000 4.97 0.00 0.00 3.42
2334 2583 2.498481 ACCTTGTGCGTACTAATGGCTA 59.502 45.455 4.97 0.00 0.00 3.93
2335 2584 1.278127 ACCTTGTGCGTACTAATGGCT 59.722 47.619 4.97 0.00 0.00 4.75
2336 2585 1.734163 ACCTTGTGCGTACTAATGGC 58.266 50.000 4.97 0.00 0.00 4.40
2337 2586 4.380841 TCTACCTTGTGCGTACTAATGG 57.619 45.455 4.97 4.46 0.00 3.16
2338 2587 4.267928 GCTTCTACCTTGTGCGTACTAATG 59.732 45.833 4.97 0.00 0.00 1.90
2339 2588 4.081862 TGCTTCTACCTTGTGCGTACTAAT 60.082 41.667 4.97 0.00 0.00 1.73
2340 2589 3.256383 TGCTTCTACCTTGTGCGTACTAA 59.744 43.478 4.97 0.00 0.00 2.24
2341 2590 2.821378 TGCTTCTACCTTGTGCGTACTA 59.179 45.455 4.97 0.00 0.00 1.82
2342 2591 1.616865 TGCTTCTACCTTGTGCGTACT 59.383 47.619 4.97 0.00 0.00 2.73
2343 2592 1.993370 CTGCTTCTACCTTGTGCGTAC 59.007 52.381 0.00 0.00 0.00 3.67
2344 2593 1.616865 ACTGCTTCTACCTTGTGCGTA 59.383 47.619 0.00 0.00 0.00 4.42
2345 2594 0.393077 ACTGCTTCTACCTTGTGCGT 59.607 50.000 0.00 0.00 0.00 5.24
2346 2595 0.792640 CACTGCTTCTACCTTGTGCG 59.207 55.000 0.00 0.00 0.00 5.34
2347 2596 1.160137 CCACTGCTTCTACCTTGTGC 58.840 55.000 0.00 0.00 0.00 4.57
2348 2597 1.160137 GCCACTGCTTCTACCTTGTG 58.840 55.000 0.00 0.00 33.53 3.33
2349 2598 0.320771 CGCCACTGCTTCTACCTTGT 60.321 55.000 0.00 0.00 34.43 3.16
2350 2599 0.320771 ACGCCACTGCTTCTACCTTG 60.321 55.000 0.00 0.00 34.43 3.61
2351 2600 1.204941 CTACGCCACTGCTTCTACCTT 59.795 52.381 0.00 0.00 34.43 3.50
2352 2601 0.818296 CTACGCCACTGCTTCTACCT 59.182 55.000 0.00 0.00 34.43 3.08
2353 2602 0.806492 GCTACGCCACTGCTTCTACC 60.806 60.000 0.00 0.00 34.43 3.18
2354 2603 2.666989 GCTACGCCACTGCTTCTAC 58.333 57.895 0.00 0.00 34.43 2.59
2373 2622 4.666253 CACCCTGGCCACCCTGTG 62.666 72.222 0.00 2.80 0.00 3.66
2379 2628 3.661648 ATGGACCACCCTGGCCAC 61.662 66.667 0.00 0.00 43.14 5.01
2380 2629 3.660571 CATGGACCACCCTGGCCA 61.661 66.667 4.71 4.71 43.97 5.36
2381 2630 4.447342 CCATGGACCACCCTGGCC 62.447 72.222 5.56 0.00 43.04 5.36
2382 2631 3.338250 TCCATGGACCACCCTGGC 61.338 66.667 11.44 0.00 46.80 4.85
2394 2643 0.336048 AAATCCCAGGGTGGTCCATG 59.664 55.000 5.01 0.00 44.12 3.66
2395 2644 0.336048 CAAATCCCAGGGTGGTCCAT 59.664 55.000 5.01 0.00 35.17 3.41
2396 2645 1.773635 CAAATCCCAGGGTGGTCCA 59.226 57.895 5.01 0.00 35.17 4.02
2397 2646 1.000359 CCAAATCCCAGGGTGGTCC 60.000 63.158 5.01 0.00 35.17 4.46
2398 2647 1.682344 GCCAAATCCCAGGGTGGTC 60.682 63.158 14.01 4.42 35.17 4.02
2399 2648 2.445155 GCCAAATCCCAGGGTGGT 59.555 61.111 14.01 0.00 35.17 4.16
2400 2649 2.364186 GGCCAAATCCCAGGGTGG 60.364 66.667 5.01 7.37 37.25 4.61
2401 2650 2.364186 GGGCCAAATCCCAGGGTG 60.364 66.667 4.39 0.00 45.82 4.61
2414 2663 4.147587 ATGGGCTGATGGTGGGCC 62.148 66.667 0.00 0.00 46.56 5.80
2415 2664 2.836360 CATGGGCTGATGGTGGGC 60.836 66.667 0.00 0.00 0.00 5.36
2416 2665 1.152819 CTCATGGGCTGATGGTGGG 60.153 63.158 0.00 0.00 32.10 4.61
2417 2666 0.839277 TACTCATGGGCTGATGGTGG 59.161 55.000 0.00 0.00 32.10 4.61
2418 2667 2.715749 TTACTCATGGGCTGATGGTG 57.284 50.000 0.00 0.00 32.10 4.17
2419 2668 5.589367 AATATTACTCATGGGCTGATGGT 57.411 39.130 0.00 0.00 32.10 3.55
2420 2669 6.906157 AAAATATTACTCATGGGCTGATGG 57.094 37.500 0.00 0.00 32.10 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.