>input_sequence_79431
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---------------------------------------------------ATGGCCCCCAAGGCAGACAAGAAGCCGGC
CGCCGAGAGCAAGGTCGAGAAGGCGGCGGAGAAGACCCCGGCAGGCAAGAAGCCCAAGGCCGAGAAGCGGGTGCCGGCGG
GCAAGACGGCGGCCAAGGAGGGCGCCGGCGGCGAGGGCAAGACTCGGGGCCGGAAGAAGGGCAGCAAGGCCAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACGTGGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTGGCGAGGTACAACAAGAAGC
CCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAG--------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>chr6D_1_TraesCS6D01G326800
TATGATAGGTTTCCATCACGTCAAATAACATTGATTTTCACCCACATATCAGTGTTCTCTCTAA-------TGTTTTAGA
TCCCGTCGTTGGTTAAGATCACGATGAAATCAATCAAAAGGGTGTGCGCACGAGGTAAAAAAATCTGACAATCCTACGAC
TACAACATAGAAACT-AAAGGTAAACACTAATGCAAATTTAGACTCATCATGCGCATTCGGAGGCCTCCCACGCT-CCCC
AACTGGGAGGTCACGGCGATAGGAGCCCACCCCCCGGGTCGTCGAGGGGACGCCACTAGTAGATTCATGCTC-TCTATGC
ATGGATGCAACCGAGTCTGAGGGCCCAGGGGGCTCA--TGTCCTGCCTGAGCATGAGTCAACGCGAGGGTACCTTCAGAG
ATCTCCTTAGCCCCGATGACCGCAATATGTTCCAAGCAAGGTCCACACTCGTCCTGGAACACCATCACACCGTATGTGGC
GAGATCAGACAAGTGCTTTAGGGGAATCGTTTGAGGATCGAGAACCCAAAACCCGAATGGCGAGGGAAGGGAGGGGAAGT
ACCTTTTTTTTTAGGTGAAGGAGGGGAAGTACCTGAATCGAGGTTGTAG------ACTGTGGCCTCTCGGGCCACTACCG
CCAGGCCACAAGTAACATAGT-ATTTTTTCCGAGTCGCATGAGTAACATT------GTTGCGAGAGAAGTAATAGCTATT
TTTTTA-ATACAGTATATGGCATTGCATCCGAAAAAGAATACAAAAGGTGTAGTAAAGCCT-------------------
----------------------TATGTTTCTAAATTCTGTTTTTGTGTGCCGAAACTGCAAAGTTCCCGCCAGCCACGGA
GAAAATTTCGTGTTGCCCACCATCTCGCCCACGTCATCGATCCGAGGCACCGGCCTCTCCACCAATCAGCGCGCACCTCC
TCCCCGCTATATACTTCCTCCG-CCCC-CGCATCCATTCGCATCAGCAATTCCCCACCTCCCA------GCGAAACACCC
CCG-CTCCC-T--CT---CCCACCTCCGA---------AGCAGCAGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
CGCCGAGAGCAAGGTCGAGAAGGCGGCGGAGAAGACCCCGGCAGGCAAGAAGCCCAAGGCCGAGAAGCGGGTGCCGGCGG
GCAAGACGGCGGCCAAGGAGGGCGCCGGCGGCGAGGGCAAGACTCGGGGCCGGAAGAAGGGCAGCAAGGCCAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACGTGGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTGGCGAGGTACAACAAGAAGC
CCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGCTGAA--------TCT--GAATGCGTCGCC---TTGT------
---TG------TAGTTGGCTG-----------------CTGTT-----------GACTCTGCTTATCTCTCT-C--AAGT
AGTGGTAG---------TAGTAGTTGTGCACTA---------------GATGATTGCCAACGCTTTGTTGGATCCTTGGT
TGTTGC----------------TTTTGCAAGCTGATATCTATGTAG----AATGTGGAA-GTTGTGGTTGTGTATCCGTA
TCCACAGTGATG-ATTTGACAGATGTTGGCTTTTCTACTCTTCTGAACTGAACGCAGCCATGCCTGGCCAATTTGCATTT
TGTCTGCGAGTTCTAGTGCTGATTGATCGGAAT--------------------------GCAAACTGAGATGCGATTTAG
ACTAATGATGCATTGATGCT----GTTTGTGATTTCTTCAGTCTGTGATTTTATTTAGAAGAACAGCAATTGCTTGCACT
AATCTCTGCCGTGTGTTTCTGCTTTCGTACGGTAG-----TAAGTTCAGTCTGCAGACCCCTGATCCTCCATCAGCAGGT
TCCGTTTCTGCACGAGATCGAGAAAACCAGTGTTCAGTGGAACATGGCAATGCAGAATTGA------------GTCTTGT
TCTTGTTTTGGCA-CCCCAGTAATTAGCATCGCTGATGCATTACTCTGCGATTAGTGTCAGTCAATTGGC----AAACCA
GTCTGCAGCAGCTTGGCTTCGCTGTTTTATTGCCTCGCTCTTCATTGAAGAAAACTTACATGCCTTCTACGCACATTTTG
TGTGCCATGGAACGGAAGGTATGCTCTTGTCCTGTGGCCGGAGCTTCAGTCTTGGCAGCATCGTGTGCTGAAAATAGGAA
ATGAGTTATCCACAATCAGTCGAAGGATTAGAAACTTTTGTGACTTACGACGGCAGTATTTTTTGCGTCTGTATGACTAT
CTGTGCTGTTCTGTAATACCACTAGCCATTAGTACGCACAAGGTAGAAGCAGTGGCGTAGCCACAGGGTGGCCAGGGTGG
TCCATGGACCACCCTGGGATTTGGCCCACCATCAGCCCATGAGTAATATTTTTTAGCATTCAGAGAGAGAGAG
>chr6B_1
TATGATAGGTTTCCATCACGTCAAATAACAT-GATTTTCACCCATATATCCGTGTTCTCCTCTTTAACATTC----CAGA
TCCTCTTGTTGGTTAAGATCATGGTGAAATCAATCAAAAGGGTGCGCGGTCGATGT-AAAAATTCCAACAATCCTATGGC
TACAACATAGAAACTAAAAGGTAAAAACTAATGCAAATTTAGACTCATCAGATGCG-TGGGAGGCCTCGCACGCT-CCCC
AACTGAGAGGTCACGACGATAGGAGCCTT--CCCCGGGTTGCCGAGGGGACACCACTACTGGATTCATGCTCTTTTATGC
ATGGATGTAACCGAGCTTGAGGGCCCAAGTTTTTTTTTTGTCCCTCCTGAGCACGAACCGCCGCGAGGGTCCCTTCGAAG
ATTTCCTTAGCCCCGATAGCTGCAATCTATTCCAAGCGAGGCCCATGTTCGTCGCAGAACACCATCACACAGTCTGCGGC
GACATCAAACAATTGCTCTAGAGGAAACGTTCGAGGACTAAGAACCCAAAACCCGAAGGTCGAGGGAAGGGAGGGGAAG-
-----------------------------TACTTGAATCGAGGTTGCAAAGTACAACTGTGGCCTCTCGGCTCTCG----
---GGCCACAAGTAACATAGTTATTTTTTTTAGGTCGCACGAGTAACATA-------TTGTGAGAGAAGTAATAGCTGTT
TTTTAT-ATATAGGTG------TTGCATCCCAAAAAGACTACAAAAGGTGTAATAAAA----------------------
------------------GGAGTATGTTTCTAAATTGTGTTTCTGTGCGCCGAAATTGCAAAATTCCCGCCAGCCACGTA
GAAAAATTCCTGTTGCCCACCATCTCGCCCACGTCATCGATCCGAGGCACTGGCCTCTCCACCAATCAGCGCGCACCTCC
TCCCCGCTATA--CTTCCTCCG-CCCCCCGCCTCCATTCGCATCTGCAATTCCCCACCTCCAA------GCGAAACACCT
CCCACTCCC-T--CT---CCCACCTCCGA---------AGCAGCAGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
CGCCGAGAGCAAGGTCGAGAAGGCGGCGGAGAAGACCCCGGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGGTGCCGGCGG
GCAAGACGGCGGCCAAGGAG------GGCGGCGAGGGCAAGACGAGGGGCCGGAAGAAGGGCAGCAAGGCCAAGAAGAGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACGTGGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTGGCGCGCTACAACAAGAAGC
CCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGAA--------TCTCTGATTGCGTCGCCTTGTTGTTCCAAA
TGTAG------TAGTTGGCTG-----------------CTGCT-----------GACTCTGCTTATCTCTCTGC--AAGT
AGTGGTA---------------------------------GTG--GTGGATGATTGCCAACGCTCTGTTGGCTCCTTGGT
TGTTAGAGGTGAACTTGTTGCTTTTG-CAAACTGATATCAGTATCCAGAAAACGTTGCA-GTCGTGGTTCTATATCCGTG
C---CAGTGATG-ATTTGACTGATGTTGGCTTTTCTACTTTTCTGAACTGAACACAGCCATGTCCGGCCAATTTGCATTT
TATCCGCGCCA----------ATGGATCGGAAT--------------------------GCAAACTGAGATGCGATTTAG
AATAATGGCGCGTTGATGCT----GTTTATGGTTTCTTCAGTATGTGATTTGATTTAGAACAGCAGCAAGTGCTTGCACT
AATCTCTGCCGTGTGTTTCTGCTTTCGTACGGTAG-----TAAGTTCAGTCTGCAGACCCCTGATCCTCCATCAGTAGGT
TCCGTTTCTGCACGAGATGGAGAAAACCAGTGCTCAGTGGAACATGGCAACGCAGAATTGAGGGCCTTGGCATGTCTTGT
TCTTGTTTTATCACCCCCAGTAATTAGCATCGCTGATGCATTACTCTGCAATTAGTGTCAGTCAATTGGTAGAGAAACCA
GTCTGCAACAGCTTGGCTTCTCTGTTTCATTGCCTTGCTCTTCATTGAAGAAAACTTACATGCCTTCTA-----------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>chrUn_1
TATGATAGGTTTCCATCGTGTGAAATAACAT-GATTTTCATCCATATAGCCGTGTTCTCCTCTTTAACGCTTGCTTCAGA
TCCTCTTGTTGGTTAAGATCATGGTGAAATCAATCAAAAGGGTGCGCGAACGATGTAAAAATTCCGATAATCTACAGA--
TACAACATAGAAACT-AGAGGTAAAAACTAATGCAAATCTAGACTCATCAGGCGCGCTGAGAGGCCTCTCACGCTACCCC
AATTGAGAGGTCACGACGATAGGAGTTTCT--CCCCGGTCGCCAAGGGGACGCCACTACTGGATTCATGCTC-TCTATGC
ATGGATGCAACAAAAGTCCAAGGGTC--GGGGCTCA--TGTCCCGCCTGAGCACGAGTCGCCACGAGGGCCCCTTCAAAG
ATCTCATTAGCCCCAATGGATGCAATCTGTTCCAAGCGAGGCCCATGCTCGTCGCAGAACACCATCACACCGTACGTGGC
GACATTAGACAAGTGCTTTAGAGGAATCGTTCGAGGACTGAGAACCCA-AACCCGAAAGGCGAGGGAAGGGAGGGGAAG-
-----------------------------TACCTGAATCAAGGTTGCAGAGTACAACTGTGGCCT---------------
-----------------------TTTGTTTTGGGTCGCACGAGTAACATACTCCTAGTTGTGAGAGAAGTAATAGCTGTT
TTTTTTAATATATGCG------TCGCATCCGTAAAAGACTACTCCAACAAAATTGTGGAGTCGCACAAAAGGGAGTATGT
TTTTTTTTTGAGGATAAGGGAGTATGTTTCTAAATTGTGTTTCTGTGCGCCGAAATTACAAAATTCCCGCCAGCCACGGA
GAAAATTTCCTGCTGCCCACCATTTCGCCCACGTCATCGATCCGAGGCACCGGCCTCTCCACCAATCAGCGCGCACCTCC
TCCCCTCTATATACTTCCTCCG-CCCCCCGCCTCCATTCACATCTGCAATTCCCCACCTCCCA------GCGAAACACCT
CCCGCT-CCCT--CT---CCCACCTCC------GAAGCAGCAGCAGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
CGCCGAGAGCAAGGTCGAGAAGGCGGCGGAGAAGACCCCGGCGGGCAAGAAGCCCAAGACCGAGAAGCGGTTTCCGGCGG
GCAAGACGGCGGCCAAGGAGGGCGCCGGCGGCGAGGGCAAGACGAGGGGCCGGAAGAAGGGCGGCAAGGCGAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTAGCGAGGTACAACAAGAAGC
CCACCGTCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGAA--------TCT--GAATGCGTCGCC---TTGTTGTTCC
AAATGTAGTACTAGTTGGCTG-----------------CTGTT-----------GACTCTGCCTGTCTCTCTGC--GAGT
AGTGGTAG---------TGG-----------TA---------------GATGATTGCCAACGCTTCGTTGGCTCCTTGGT
TGTTAGAGGTGAACTTGTTGCTTTTG-CAAACTGATATCACTATCTAGAAAATGTTGCA-GTCGTGGTTCCATATCCGTA
TCA---GTGATGAATTTGATTGATGCTGTCTTTTCTACTCTTGTGAACTGAACACTC-----------------------
TGTCCGCGAGCTCTAGTGCTGATGGACCGGAATTGCTGGTGCTTGCCAATGCTACTCACGCAAACTGGGATGCGATTTAG
AATAACGATGCATTGATGCTGCTCGTTTGTGATTTCTTCAGTCTCTGATTTGATTTAGAAT---AGCAAGTGCTTGCACT
GCTCTCTGCAATGTGTTTATGCTTTTGTACGGTACCAATTTAAGTTCAGTTTCCAGACCCTGC-----CCATCAGTAGGT
TCCATTTCTGCACGAGACCGAGAAAACCAGTGTTGAGTGG----------------------------------------
--------------------------------------------------------------------------------
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>chr1A_792
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----------------------------------------------------------CAAAATTCCCGCCAGCCACGGC
TGG--TTTCCTGTTGCCTACCATCCCGCCCACGTCATCGATCCGAGGCACCGGCGTCTCCACCAATCAGCGCGCACCTCC
TCCCCGCTATATACCCTC-CCC-ACCCCCGCCTCTGTTCCCATCACCAATTCCCCACCTCCCA------GCCAAACACCT
C----TCCCCT--CT---CCCACCTCC------GAAGCAGCAGCAGCAGCCATGGCCCCCAAGGCGGACAAGAAGCCGGC
CGCCGAGAGCAAGGTCGAGAAGGCGGCGGAGAAGGCCCCGGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGG
GCAAGACGGCGTCCAAGGAG---GCCGGCGGCGAGGGGAAAACCCGGGGCAGGAAGAAGGGCAGCAAGGCCAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGCGAGGTACAACAAGAAGC
CCACCATCACGTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGATGAACTGATGAT--GCGTCCGTCGCC---T---------
----C------TAGTTGGTCTCTGTATCTGCATCT---CTGTT-----------AACTCTGCTTATCCCTCTGC--AAGT
AGTGCTGG---------TAG-----------T------CTGTG--CTGGGTGATTGCCAACGCTTCGTTGGCTCGTTCCT
CGTTGC----------------TTGTG-----------------------------------------------------
--------------------------------------------------------------------------------
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>chr1D_792
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----------------------------------------------------------CAAAATTCCCGCCAGCCAAGGC
TGG--TTTCCTGTTGCCTACCATCTCGCCCACGTCATCGATCCGAGGCACCGGCCTCTCCACCAATCAGCGCGCACCTCC
TCCCGCCTATATACTTTCGCCG-TCCCTCGCTTCATTTCACATCTGCAATTCCCCACCTCCCACTCCCAGCGAAACACCC
C----GCTCCCTCT-----------------------CTCAAGCAGCCGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
CGCGGAGAGCAAGGTGGAGAAGGCGGCGGAGAAGGCCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTTCCGGCG-
-----------TCCAAGGAGGCCGCCGGCGGCGAGGGCAAGACGAGGGGCCGGAAGAAGGGCAGCAAGGCGAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGC
CCACCATCACGTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCATAGACTGAA--------GAT--GCGTCCGTCGCC---T---------
----G------TAGTTGGTCTCTGTATCTGCACCTGTACTGTC-----------GACTCTGCTTGTCTCTCTGC--AAGT
AGTGCTGG---------TAG-----------T------CTG----CTGGGTGATCGCCAACGCTTTGTTGG---------
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>chr1B_798
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----------------------------------------------------------------TCCCGCCAGCCACGGC
TGG--TTTCCTGGTGCCTACCATTCCGCCCACGTCATCGATCCGCGGCAACGGCCTCTCCACCAATCAGCGCGCACCTCC
TCCCCGCTATATACCCTC-CCC-ACCCCCGCCTCTGTTCCCATCTGCAATTCCCCACCTCCCA------GCGAAACACCT
C----TCCC-T--CT---CCCACCTCCGA---------AGCAGCAGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
GGCGGAGAACAAGGTCGAGAAGGCGGCGGAGAAGGCCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGG
GCAAGACGGCGGCCAAGGAG---G------GCGAGGCGAAGACGAGGGGCCGGAAGAAGGGCAGCAAGGCCAAGAAGAGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGC
CGACCATTACCTCCCGCGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGA-----------T--GCGTCCGTCGCC---T---------
----C------TAGTTGGTATCTGTATCTGTAG------TGTC-----------GACTCTGCTTGTCACTCTGC--AAGT
AGTGCTGG---------TAG-----------T------CTGTGTGCTGGGTGCTCGCCAACGCTTCGTTGGCTGATTGGC
TGTAGGAACTGAAGTTGTTGCATTTGGCAGACTGATATCTATCTAG----AACTGAACTTGTGGTGGTACTATATCTGTA
TCC---GTGATG-GTCTGACTGATGCTTGCTTGTCTACTCTTCTGAAATG------------------------------
--------------------------------------------------------------------------------
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>chr1A_845
CGT-----------------------------------------------------------------------------
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-----------------------------------ATCGATCCGTGGCACCGGCCTCTCCACCAATCAGGGCGCACCTCC
TCCCCACCATATAATCTCGCCGCCCCC-AGCCTCATTTCACATCTGCAATTCCCCACCTCCGA------GCGAAACACCT
C----TCCC-TCACT---CTCACCTCCGA----GAAGCTCCAGCGGCAGCCATGGCCCCAAAGGCAGACAAGAAGCCGGC
GGCCGAGAACAAGGTGGAGAAGGCGGCGGAGAAGACCCCCGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCAG
GCAAGACGGCGTCCAAGGAG---GCCGGCGGCGAGGGGAAGACCCGGGGCAGGAAGAAGGGCAGCAAGGCGAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCGGCCAAGCTCGCGAGGTACAACAAGAAGC
CCACCATCACCTCTAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACATCCTCCTAGACTGAC--------GAC--GCGCCG-----C---TTGTTGTGAC
AGATG------TAGTTGGCTG-----------------CTGTTAGTCGC----TGACTCTGCTTATGTATCTGC--AAGT
AGTGGTAG---------GAG-----------TGGTCGT-----------ATGTGTGCCAACGCTTCGTTGGCTAGTTGGT
TGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>chr1B_845
CGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------ATCGATCCGTGGCACCGGCCTCTCCACCAATCAGCGCGCACCTCC
TCCACACCATATAATCTCGCCGCCCCCCCTCCTCGTTTCACATCTGCAATCCCCCACCTCCGA------GCCAAACACCT
CC---TCCC-TCACT---CCCACCTCC------GAAGCTTCAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCCGC
GGCCGAGAACAAGGTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGG
GCAAGACGGCGTCCAAGGAG---GCCGGCGGCGAGGGGAAGACCCGGGGCCGGAAGAAGGGCAGCAAGGCGAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCCCGCTACAACAAGAAGC
CCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCTGTCACCAAGTTCACCTCCTCCTAGATTGAC--------TAT--GCGTCG-----C---TTGTTGTGAT
AGATG------TAGTTGGCTG-----------------CTGTTAGTCGC----TGACTCTGCTTATGTATCTGC--AAGT
AGTGGTAG---------TAG-----------TAGTCGTCTGTGTGCTGGCTGATTGCCAACGTTTCGTTGGCTAGTTGGT
TGTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>chr1B_845
CGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATCGATCCGTGGCACCGGCCTCTCCACCAATCAGCGCGCACCTCC
TCCACACCATATAATCTCGCCGCCCCC-AGCCTCATTTCACATCTGCAATTCCCCACCTCCGA------GCCAAACACCT
CG---TCCC-TCACT---CCCACTTCCACCTTCGAAGCTCCAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
CGCCGAGAACAAGGTCGAGAAAGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCAG
GCAAGACGGCGTCCAAGGAG---GCCGGCGGCGAGGCCAAGACGAGGGGCCGGAAGAAGGGCAGCAAGGCCAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCCCGCTACAACAAGAAGC
CCACCATCACCTCCAGGGAGATCCAGACCTCCGTTCGCCTGGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCTGAG
GGCACCAAGGCTGTCACCAAGTTCACCTCCTCTTAGACTGAC--------GCT--GCGTCG-----C---TTGTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr1D_845
CGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATCGATCCGTGGCACCGGCCTCTCCACCAATCAGCGCGCACCTCC
TCCCCACCATATAATCTCGCCGCCCCC-AGCCTCATTTCACATCTGCAATTCCCCACCTCCTCACTCC-------CACCT
C----TCCC-T--CACTCCCCACCTCC------GAAGCTCCAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
GGCCGAGAACAAGGTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGG
GCAAGACGGCGTCCAAGGAG---GCCGGCGGCGAGGCCAAGACCCGGGGCAGGAAGAAGGGCAGCAAGGCCAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCGGCCAAGCTCGCGAGGTACAACAAGAAGC
CCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACA------------------------------GTTGATGCGAC
AGATG------TAGTTGGCTG-----------------CTGTT-----------GTCTC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr1B_991
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
CGCGGAGAACAAGGTCGAGAAGGCGACGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGG
GCAAGACGGCGTCCAAGGAG---GCCGGCGGCGAGGGCAAGACCCGGGGCCGCAAGAAGGGCAGCAAGGCGAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCTGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCCGCCAAGCTGGCCCGCTACAACAAGAAGC
CCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGAC--------GAT--GCGTCG-----C---TTGTTGTGAC
AGATG------TGGCTGTCTG-----------------ATGTATCT--------------------------GC--AAGT
AGAAGTAGTAGTTCGTGTGG-----------TA---------------GAAGATTGCCAACGCTTTGTTGGCTTCTTGGT
TGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr1D_991
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGC
CGCCGAGAACAAGGTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGG
GCAAGACGGCGTCCAAGGAG---GCCGGCGGCGAGGGCAAGACCCGGGGCCGCAAGAAGGGCAGCAAGGCCAAGAAGGGC
GTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTC
CATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGC
CCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCCGAG
GGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGAA--------GAT--GCGCCG-----C---TTGTTGTGCC
AGATG------TGGCTGTCTG-----------------ATGTATCTCTGCTGTTGACTCTGCTTACCTGCAAGTAGAAGT
AGTGGTAGTAGTTCGTGTGG-----------TA---------------GAAGATTGCCAACGCTTTGTTGGCTTCTTGGT
TGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>SNPs
-------------------------------S------------S-----S--------SSSSS---------S--S---
---SS-S--------------S-S--------------------S---S----S--------S--SS---------S-S-
-------------------------S------------------------S----SS-S---------S-----------
-----S---------S-----------SSSS----------S----------------S-S-------------------
---------------SS----------S---------------S---------S-----SS---------S------S--
------------------S-S-----S----------S---S---SS------SSS------------------------
--S------------------S---------S-----SS------------------S---------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-----------------------SS-S-SSSSS
SSS--------------------------SS-S------S---------S----------S----------------S--
-----S----S--SSSSSSSSS----------------S-------------S-----SS--------------------
------------------------------------S-----S----S-------S------S-----------------
---------S----------------------------------------------------------------------
-------------------------------S------------------------------------------------
--S-----------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------SSSSSSSSSSS----------------------------------------S--------
------------------------------S-----------S------------S-S----S------S-S--------
---S----------------S--------------------------------S--------S-S---------------
----S-----S------------S--------------------------------------------------------
-S-------------------------------------------------S--------S-S------S----------
---------------------------------------------------------------------------S----
--------------------------------------------------S-----------------------------
---------SS--------------------------------------S-------------------S----------
-------S------------S------S-------S---------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_562
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGGGAAGGGAGGGGAAGT
AC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_2445
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTCAGTCTTGGCAGCATCGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
