Multiple sequence alignment - TraesCS6D01G309800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G309800 chr6D 100.000 3222 0 0 1 3222 420016971 420013750 0.000000e+00 5951.0
1 TraesCS6D01G309800 chr6A 91.968 2241 92 31 723 2930 563133096 563130911 0.000000e+00 3061.0
2 TraesCS6D01G309800 chr6A 93.596 203 7 6 3023 3222 563130923 563130724 6.760000e-77 298.0
3 TraesCS6D01G309800 chr6A 97.333 75 2 0 647 721 563133225 563133151 9.380000e-26 128.0
4 TraesCS6D01G309800 chr6B 90.031 2267 112 38 722 2930 632968269 632966059 0.000000e+00 2830.0
5 TraesCS6D01G309800 chr6B 93.035 201 11 2 3023 3222 632966060 632965862 1.130000e-74 291.0
6 TraesCS6D01G309800 chr6B 94.118 102 5 1 2925 3025 219879345 219879446 1.550000e-33 154.0
7 TraesCS6D01G309800 chr6B 92.661 109 5 3 2926 3033 633054015 633054121 1.550000e-33 154.0
8 TraesCS6D01G309800 chr6B 92.500 80 1 2 647 721 632968397 632968318 3.400000e-20 110.0
9 TraesCS6D01G309800 chr6B 82.759 116 15 4 3058 3171 646201798 646201686 7.360000e-17 99.0
10 TraesCS6D01G309800 chr5D 96.212 132 5 0 1914 2045 482311424 482311555 1.950000e-52 217.0
11 TraesCS6D01G309800 chr5D 95.455 132 6 0 1914 2045 482312043 482311912 9.060000e-51 211.0
12 TraesCS6D01G309800 chr5D 93.939 132 8 0 1914 2045 307933938 307933807 1.960000e-47 200.0
13 TraesCS6D01G309800 chr5D 96.000 100 3 1 2926 3024 301216106 301216205 9.250000e-36 161.0
14 TraesCS6D01G309800 chr5D 95.050 101 4 1 2926 3025 266749455 266749355 1.200000e-34 158.0
15 TraesCS6D01G309800 chr5D 94.872 39 0 2 160 196 374772216 374772178 3.470000e-05 60.2
16 TraesCS6D01G309800 chr2D 96.212 132 5 0 1914 2045 396726005 396726136 1.950000e-52 217.0
17 TraesCS6D01G309800 chr2D 94.231 104 4 2 2923 3024 609331917 609331814 1.200000e-34 158.0
18 TraesCS6D01G309800 chr2D 81.667 120 20 2 3055 3173 473292309 473292191 7.360000e-17 99.0
19 TraesCS6D01G309800 chr2D 94.737 38 2 0 157 194 617080455 617080492 3.470000e-05 60.2
20 TraesCS6D01G309800 chr3D 94.697 132 7 0 1914 2045 424686966 424687097 4.210000e-49 206.0
21 TraesCS6D01G309800 chr2B 93.939 132 8 0 1914 2045 726456176 726456045 1.960000e-47 200.0
22 TraesCS6D01G309800 chr2B 86.408 103 14 0 3058 3160 169856151 169856253 2.630000e-21 113.0
23 TraesCS6D01G309800 chr1D 93.939 132 8 0 1914 2045 52103004 52102873 1.960000e-47 200.0
24 TraesCS6D01G309800 chr7D 96.000 100 3 1 2926 3024 168427492 168427393 9.250000e-36 161.0
25 TraesCS6D01G309800 chr7D 84.337 83 12 1 380 462 449462312 449462231 2.660000e-11 80.5
26 TraesCS6D01G309800 chr4D 90.678 118 9 2 3057 3172 18693429 18693546 4.300000e-34 156.0
27 TraesCS6D01G309800 chr4D 95.000 100 4 1 2927 3025 375381914 375382013 4.300000e-34 156.0
28 TraesCS6D01G309800 chr3A 92.661 109 6 2 2925 3031 287684682 287684790 4.300000e-34 156.0
29 TraesCS6D01G309800 chr4B 91.892 111 8 1 3060 3169 30729179 30729289 1.550000e-33 154.0
30 TraesCS6D01G309800 chr2A 93.333 105 6 1 2925 3028 416627574 416627470 1.550000e-33 154.0
31 TraesCS6D01G309800 chr7B 89.091 110 8 3 3060 3167 513654204 513654311 2.020000e-27 134.0
32 TraesCS6D01G309800 chr7A 85.714 112 15 1 3060 3170 257125984 257126095 2.030000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G309800 chr6D 420013750 420016971 3221 True 5951.000000 5951 100.000000 1 3222 1 chr6D.!!$R1 3221
1 TraesCS6D01G309800 chr6A 563130724 563133225 2501 True 1162.333333 3061 94.299000 647 3222 3 chr6A.!!$R1 2575
2 TraesCS6D01G309800 chr6B 632965862 632968397 2535 True 1077.000000 2830 91.855333 647 3222 3 chr6B.!!$R2 2575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1029 0.601558 CTCCGACGACTTCCCAAGAA 59.398 55.0 0.0 0.0 0.0 2.52 F
947 1031 0.669625 CCGACGACTTCCCAAGAACC 60.670 60.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 1890 1.190643 CCCTCTCCCTGTCTCTGTTC 58.809 60.000 0.00 0.0 0.00 3.18 R
2499 2621 1.265635 GTTTACATTGTGAGTGGCGCA 59.734 47.619 10.83 0.0 34.64 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.587206 TGCCTCATATTGTTCAAATTCACA 57.413 33.333 0.00 0.00 0.00 3.58
24 25 6.623486 TGCCTCATATTGTTCAAATTCACAG 58.377 36.000 0.00 0.00 0.00 3.66
25 26 6.433716 TGCCTCATATTGTTCAAATTCACAGA 59.566 34.615 0.00 0.00 0.00 3.41
26 27 7.123098 TGCCTCATATTGTTCAAATTCACAGAT 59.877 33.333 0.00 0.00 0.00 2.90
27 28 8.623903 GCCTCATATTGTTCAAATTCACAGATA 58.376 33.333 0.00 0.00 0.00 1.98
32 33 7.975866 ATTGTTCAAATTCACAGATATTCGC 57.024 32.000 0.00 0.00 0.00 4.70
33 34 5.879237 TGTTCAAATTCACAGATATTCGCC 58.121 37.500 0.00 0.00 0.00 5.54
34 35 4.794248 TCAAATTCACAGATATTCGCCG 57.206 40.909 0.00 0.00 0.00 6.46
35 36 4.438148 TCAAATTCACAGATATTCGCCGA 58.562 39.130 0.00 0.00 0.00 5.54
36 37 4.873259 TCAAATTCACAGATATTCGCCGAA 59.127 37.500 0.33 0.33 0.00 4.30
37 38 5.527214 TCAAATTCACAGATATTCGCCGAAT 59.473 36.000 17.38 17.38 36.20 3.34
38 39 4.997905 ATTCACAGATATTCGCCGAATG 57.002 40.909 21.86 9.47 33.95 2.67
39 40 2.135139 TCACAGATATTCGCCGAATGC 58.865 47.619 21.86 13.40 33.95 3.56
40 41 1.866601 CACAGATATTCGCCGAATGCA 59.133 47.619 21.86 3.57 41.33 3.96
41 42 2.481568 CACAGATATTCGCCGAATGCAT 59.518 45.455 21.86 8.64 41.33 3.96
42 43 2.481568 ACAGATATTCGCCGAATGCATG 59.518 45.455 21.86 17.46 41.33 4.06
43 44 2.738314 CAGATATTCGCCGAATGCATGA 59.262 45.455 21.86 2.01 41.33 3.07
44 45 3.187022 CAGATATTCGCCGAATGCATGAA 59.813 43.478 21.86 1.24 41.33 2.57
45 46 4.005650 AGATATTCGCCGAATGCATGAAT 58.994 39.130 21.86 6.42 41.33 2.57
46 47 5.063817 CAGATATTCGCCGAATGCATGAATA 59.936 40.000 21.86 15.04 41.33 1.75
47 48 5.819379 AGATATTCGCCGAATGCATGAATAT 59.181 36.000 21.86 20.70 41.60 1.28
48 49 4.771590 ATTCGCCGAATGCATGAATATT 57.228 36.364 12.22 0.00 41.33 1.28
49 50 4.566545 TTCGCCGAATGCATGAATATTT 57.433 36.364 0.00 0.00 41.33 1.40
50 51 4.566545 TCGCCGAATGCATGAATATTTT 57.433 36.364 0.00 0.00 41.33 1.82
51 52 4.930963 TCGCCGAATGCATGAATATTTTT 58.069 34.783 0.00 0.00 41.33 1.94
52 53 6.066054 TCGCCGAATGCATGAATATTTTTA 57.934 33.333 0.00 0.00 41.33 1.52
53 54 6.499172 TCGCCGAATGCATGAATATTTTTAA 58.501 32.000 0.00 0.00 41.33 1.52
54 55 6.975197 TCGCCGAATGCATGAATATTTTTAAA 59.025 30.769 0.00 0.00 41.33 1.52
55 56 7.489435 TCGCCGAATGCATGAATATTTTTAAAA 59.511 29.630 0.00 0.00 41.33 1.52
56 57 8.274939 CGCCGAATGCATGAATATTTTTAAAAT 58.725 29.630 0.00 8.07 41.33 1.82
57 58 9.934190 GCCGAATGCATGAATATTTTTAAAATT 57.066 25.926 8.28 1.02 40.77 1.82
101 102 8.879342 TTGTGAATATATTTTTAAATGCCGGG 57.121 30.769 2.18 0.00 0.00 5.73
102 103 8.239038 TGTGAATATATTTTTAAATGCCGGGA 57.761 30.769 2.18 0.00 0.00 5.14
103 104 8.356657 TGTGAATATATTTTTAAATGCCGGGAG 58.643 33.333 2.18 0.00 0.00 4.30
104 105 8.573035 GTGAATATATTTTTAAATGCCGGGAGA 58.427 33.333 2.18 0.00 0.00 3.71
105 106 9.137459 TGAATATATTTTTAAATGCCGGGAGAA 57.863 29.630 2.18 0.00 0.00 2.87
110 111 7.994425 ATTTTTAAATGCCGGGAGAATTTTT 57.006 28.000 2.18 0.00 31.44 1.94
177 178 9.913451 TCAAATTCGTGAACATTTTTCAAAATC 57.087 25.926 0.00 0.00 36.52 2.17
178 179 9.699985 CAAATTCGTGAACATTTTTCAAAATCA 57.300 25.926 0.00 0.00 36.52 2.57
179 180 9.701355 AAATTCGTGAACATTTTTCAAAATCAC 57.299 25.926 4.79 4.79 36.52 3.06
180 181 7.818493 TTCGTGAACATTTTTCAAAATCACA 57.182 28.000 12.59 5.32 36.18 3.58
181 182 7.818493 TCGTGAACATTTTTCAAAATCACAA 57.182 28.000 12.59 0.00 36.18 3.33
182 183 8.244494 TCGTGAACATTTTTCAAAATCACAAA 57.756 26.923 12.59 0.91 36.18 2.83
183 184 8.165428 TCGTGAACATTTTTCAAAATCACAAAC 58.835 29.630 12.59 0.00 36.18 2.93
184 185 7.954248 CGTGAACATTTTTCAAAATCACAAACA 59.046 29.630 12.59 0.00 36.18 2.83
185 186 9.771915 GTGAACATTTTTCAAAATCACAAACAT 57.228 25.926 8.76 0.00 36.32 2.71
199 200 9.545105 AAATCACAAACATTTTCTGAAATAGCA 57.455 25.926 3.31 0.00 33.78 3.49
200 201 9.545105 AATCACAAACATTTTCTGAAATAGCAA 57.455 25.926 3.31 0.00 33.78 3.91
201 202 8.939201 TCACAAACATTTTCTGAAATAGCAAA 57.061 26.923 3.31 0.00 33.78 3.68
202 203 8.816144 TCACAAACATTTTCTGAAATAGCAAAC 58.184 29.630 3.31 0.00 33.78 2.93
203 204 8.602328 CACAAACATTTTCTGAAATAGCAAACA 58.398 29.630 3.31 0.00 33.78 2.83
204 205 9.328845 ACAAACATTTTCTGAAATAGCAAACAT 57.671 25.926 3.31 0.00 33.78 2.71
242 243 7.962934 TTTTTAGATTCGCGAACATTTATGG 57.037 32.000 26.00 0.00 0.00 2.74
243 244 6.912203 TTTAGATTCGCGAACATTTATGGA 57.088 33.333 26.00 0.00 0.00 3.41
244 245 6.912203 TTAGATTCGCGAACATTTATGGAA 57.088 33.333 26.00 5.53 0.00 3.53
245 246 7.490962 TTAGATTCGCGAACATTTATGGAAT 57.509 32.000 26.00 2.82 0.00 3.01
246 247 6.377327 AGATTCGCGAACATTTATGGAATT 57.623 33.333 26.00 2.58 0.00 2.17
247 248 6.795399 AGATTCGCGAACATTTATGGAATTT 58.205 32.000 26.00 2.06 0.00 1.82
248 249 6.692681 AGATTCGCGAACATTTATGGAATTTG 59.307 34.615 26.00 0.00 0.00 2.32
249 250 4.101942 TCGCGAACATTTATGGAATTTGC 58.898 39.130 6.20 0.00 0.00 3.68
250 251 3.856521 CGCGAACATTTATGGAATTTGCA 59.143 39.130 0.00 0.00 0.00 4.08
251 252 4.325741 CGCGAACATTTATGGAATTTGCAA 59.674 37.500 0.00 0.00 0.00 4.08
252 253 5.164012 CGCGAACATTTATGGAATTTGCAAA 60.164 36.000 15.44 15.44 0.00 3.68
253 254 6.014898 GCGAACATTTATGGAATTTGCAAAC 58.985 36.000 15.41 2.27 0.00 2.93
254 255 6.347240 GCGAACATTTATGGAATTTGCAAACA 60.347 34.615 15.41 8.78 0.00 2.83
255 256 7.623925 GCGAACATTTATGGAATTTGCAAACAT 60.624 33.333 15.41 15.48 0.00 2.71
256 257 8.229137 CGAACATTTATGGAATTTGCAAACATT 58.771 29.630 15.41 5.81 0.00 2.71
257 258 9.896263 GAACATTTATGGAATTTGCAAACATTT 57.104 25.926 15.41 4.98 0.00 2.32
259 260 9.896263 ACATTTATGGAATTTGCAAACATTTTC 57.104 25.926 15.41 13.76 0.00 2.29
260 261 9.344309 CATTTATGGAATTTGCAAACATTTTCC 57.656 29.630 25.46 25.46 37.55 3.13
261 262 8.455903 TTTATGGAATTTGCAAACATTTTCCA 57.544 26.923 31.95 31.95 44.64 3.53
262 263 6.956202 ATGGAATTTGCAAACATTTTCCAA 57.044 29.167 32.81 22.39 44.16 3.53
263 264 6.764308 TGGAATTTGCAAACATTTTCCAAA 57.236 29.167 29.68 15.99 41.02 3.28
264 265 7.344095 TGGAATTTGCAAACATTTTCCAAAT 57.656 28.000 29.68 5.34 41.02 2.32
265 266 7.779073 TGGAATTTGCAAACATTTTCCAAATT 58.221 26.923 29.68 12.51 44.26 1.82
268 269 8.631676 AATTTGCAAACATTTTCCAAATTCAC 57.368 26.923 15.41 0.00 40.21 3.18
269 270 5.401033 TGCAAACATTTTCCAAATTCACG 57.599 34.783 0.00 0.00 0.00 4.35
270 271 5.111989 TGCAAACATTTTCCAAATTCACGA 58.888 33.333 0.00 0.00 0.00 4.35
271 272 5.757320 TGCAAACATTTTCCAAATTCACGAT 59.243 32.000 0.00 0.00 0.00 3.73
272 273 6.073873 TGCAAACATTTTCCAAATTCACGATC 60.074 34.615 0.00 0.00 0.00 3.69
273 274 6.073873 GCAAACATTTTCCAAATTCACGATCA 60.074 34.615 0.00 0.00 0.00 2.92
274 275 7.518052 GCAAACATTTTCCAAATTCACGATCAA 60.518 33.333 0.00 0.00 0.00 2.57
275 276 8.497554 CAAACATTTTCCAAATTCACGATCAAT 58.502 29.630 0.00 0.00 0.00 2.57
276 277 8.606040 AACATTTTCCAAATTCACGATCAATT 57.394 26.923 0.00 0.00 0.00 2.32
277 278 8.606040 ACATTTTCCAAATTCACGATCAATTT 57.394 26.923 0.00 0.00 34.42 1.82
278 279 9.054922 ACATTTTCCAAATTCACGATCAATTTT 57.945 25.926 0.00 0.00 32.25 1.82
279 280 9.320406 CATTTTCCAAATTCACGATCAATTTTG 57.680 29.630 0.00 0.00 32.25 2.44
280 281 8.654230 TTTTCCAAATTCACGATCAATTTTGA 57.346 26.923 0.00 0.00 42.14 2.69
281 282 8.654230 TTTCCAAATTCACGATCAATTTTGAA 57.346 26.923 10.03 10.03 41.13 2.69
282 283 8.654230 TTCCAAATTCACGATCAATTTTGAAA 57.346 26.923 11.01 1.82 41.13 2.69
283 284 8.830201 TCCAAATTCACGATCAATTTTGAAAT 57.170 26.923 0.00 0.00 41.13 2.17
284 285 8.924691 TCCAAATTCACGATCAATTTTGAAATC 58.075 29.630 0.00 0.00 41.13 2.17
285 286 8.710551 CCAAATTCACGATCAATTTTGAAATCA 58.289 29.630 0.00 0.00 41.13 2.57
288 289 9.642327 AATTCACGATCAATTTTGAAATCATGA 57.358 25.926 0.00 0.00 41.13 3.07
289 290 9.642327 ATTCACGATCAATTTTGAAATCATGAA 57.358 25.926 0.00 7.46 41.13 2.57
290 291 8.451687 TCACGATCAATTTTGAAATCATGAAC 57.548 30.769 0.00 0.00 41.13 3.18
291 292 8.081025 TCACGATCAATTTTGAAATCATGAACA 58.919 29.630 0.00 0.00 41.13 3.18
292 293 8.865978 CACGATCAATTTTGAAATCATGAACAT 58.134 29.630 0.00 0.00 41.13 2.71
293 294 9.426837 ACGATCAATTTTGAAATCATGAACATT 57.573 25.926 0.00 0.00 41.13 2.71
399 400 4.877282 GGAACATTTTCCCAAATTCGTGA 58.123 39.130 0.00 0.00 45.27 4.35
400 401 5.293560 GGAACATTTTCCCAAATTCGTGAA 58.706 37.500 0.00 0.00 45.27 3.18
401 402 5.176774 GGAACATTTTCCCAAATTCGTGAAC 59.823 40.000 0.00 0.00 45.27 3.18
402 403 5.269505 ACATTTTCCCAAATTCGTGAACA 57.730 34.783 0.00 0.00 29.41 3.18
403 404 5.665459 ACATTTTCCCAAATTCGTGAACAA 58.335 33.333 0.00 0.00 29.41 2.83
404 405 6.109359 ACATTTTCCCAAATTCGTGAACAAA 58.891 32.000 0.00 0.00 29.41 2.83
405 406 6.765512 ACATTTTCCCAAATTCGTGAACAAAT 59.234 30.769 0.00 0.00 29.41 2.32
406 407 7.281999 ACATTTTCCCAAATTCGTGAACAAATT 59.718 29.630 0.00 0.00 29.41 1.82
407 408 7.617041 TTTTCCCAAATTCGTGAACAAATTT 57.383 28.000 0.00 0.00 35.91 1.82
408 409 7.617041 TTTCCCAAATTCGTGAACAAATTTT 57.383 28.000 0.00 0.00 33.86 1.82
409 410 6.595772 TCCCAAATTCGTGAACAAATTTTG 57.404 33.333 7.59 7.59 33.86 2.44
410 411 6.341316 TCCCAAATTCGTGAACAAATTTTGA 58.659 32.000 15.81 0.00 33.86 2.69
411 412 6.818644 TCCCAAATTCGTGAACAAATTTTGAA 59.181 30.769 15.81 0.00 33.86 2.69
412 413 7.334421 TCCCAAATTCGTGAACAAATTTTGAAA 59.666 29.630 15.81 0.00 33.86 2.69
413 414 8.127954 CCCAAATTCGTGAACAAATTTTGAAAT 58.872 29.630 15.81 1.87 33.86 2.17
414 415 9.157259 CCAAATTCGTGAACAAATTTTGAAATC 57.843 29.630 15.81 10.61 33.86 2.17
415 416 9.919348 CAAATTCGTGAACAAATTTTGAAATCT 57.081 25.926 15.81 0.00 33.86 2.40
416 417 9.919348 AAATTCGTGAACAAATTTTGAAATCTG 57.081 25.926 15.81 7.91 32.57 2.90
417 418 8.870160 ATTCGTGAACAAATTTTGAAATCTGA 57.130 26.923 15.81 9.58 0.00 3.27
418 419 7.912949 TCGTGAACAAATTTTGAAATCTGAG 57.087 32.000 15.81 6.90 0.00 3.35
419 420 7.702386 TCGTGAACAAATTTTGAAATCTGAGA 58.298 30.769 15.81 8.54 0.00 3.27
420 421 7.857389 TCGTGAACAAATTTTGAAATCTGAGAG 59.143 33.333 15.81 3.82 0.00 3.20
421 422 7.357859 CGTGAACAAATTTTGAAATCTGAGAGC 60.358 37.037 15.81 0.00 0.00 4.09
422 423 7.436080 GTGAACAAATTTTGAAATCTGAGAGCA 59.564 33.333 15.81 0.00 0.00 4.26
423 424 8.145767 TGAACAAATTTTGAAATCTGAGAGCAT 58.854 29.630 15.81 0.00 0.00 3.79
424 425 8.897872 AACAAATTTTGAAATCTGAGAGCATT 57.102 26.923 15.81 0.00 0.00 3.56
425 426 8.897872 ACAAATTTTGAAATCTGAGAGCATTT 57.102 26.923 15.81 0.00 0.00 2.32
426 427 9.333724 ACAAATTTTGAAATCTGAGAGCATTTT 57.666 25.926 15.81 0.00 0.00 1.82
436 437 9.696917 AAATCTGAGAGCATTTTTAAAATTCGT 57.303 25.926 0.55 0.00 0.00 3.85
437 438 8.679288 ATCTGAGAGCATTTTTAAAATTCGTG 57.321 30.769 0.55 0.94 0.00 4.35
438 439 7.870826 TCTGAGAGCATTTTTAAAATTCGTGA 58.129 30.769 0.55 0.00 0.00 4.35
439 440 8.349245 TCTGAGAGCATTTTTAAAATTCGTGAA 58.651 29.630 0.55 0.00 0.00 3.18
440 441 8.280909 TGAGAGCATTTTTAAAATTCGTGAAC 57.719 30.769 0.55 0.00 0.00 3.18
441 442 7.918033 TGAGAGCATTTTTAAAATTCGTGAACA 59.082 29.630 0.55 0.00 0.00 3.18
442 443 8.641499 AGAGCATTTTTAAAATTCGTGAACAA 57.359 26.923 0.55 0.00 0.00 2.83
443 444 9.260002 AGAGCATTTTTAAAATTCGTGAACAAT 57.740 25.926 0.55 0.00 0.00 2.71
444 445 9.862585 GAGCATTTTTAAAATTCGTGAACAATT 57.137 25.926 0.55 0.00 0.00 2.32
455 456 9.919348 AAATTCGTGAACAATTTTTGAAATCTG 57.081 25.926 0.00 0.00 30.74 2.90
456 457 7.462109 TTCGTGAACAATTTTTGAAATCTGG 57.538 32.000 0.00 0.00 0.00 3.86
457 458 5.982516 TCGTGAACAATTTTTGAAATCTGGG 59.017 36.000 0.00 0.00 0.00 4.45
458 459 5.982516 CGTGAACAATTTTTGAAATCTGGGA 59.017 36.000 0.00 0.00 0.00 4.37
459 460 6.478344 CGTGAACAATTTTTGAAATCTGGGAA 59.522 34.615 0.00 0.00 0.00 3.97
460 461 7.516627 CGTGAACAATTTTTGAAATCTGGGAAC 60.517 37.037 0.00 0.00 0.00 3.62
461 462 7.279758 GTGAACAATTTTTGAAATCTGGGAACA 59.720 33.333 0.00 0.00 39.59 3.18
462 463 7.992033 TGAACAATTTTTGAAATCTGGGAACAT 59.008 29.630 0.00 0.00 41.51 2.71
463 464 8.750515 AACAATTTTTGAAATCTGGGAACATT 57.249 26.923 0.00 0.00 41.51 2.71
464 465 8.750515 ACAATTTTTGAAATCTGGGAACATTT 57.249 26.923 0.00 0.00 41.51 2.32
465 466 9.187996 ACAATTTTTGAAATCTGGGAACATTTT 57.812 25.926 0.00 0.00 41.51 1.82
466 467 9.453325 CAATTTTTGAAATCTGGGAACATTTTG 57.547 29.630 0.00 0.00 41.51 2.44
467 468 8.977267 ATTTTTGAAATCTGGGAACATTTTGA 57.023 26.923 0.00 0.00 41.51 2.69
468 469 8.798859 TTTTTGAAATCTGGGAACATTTTGAA 57.201 26.923 0.00 0.00 41.51 2.69
469 470 8.798859 TTTTGAAATCTGGGAACATTTTGAAA 57.201 26.923 0.00 0.00 41.51 2.69
470 471 8.798859 TTTGAAATCTGGGAACATTTTGAAAA 57.201 26.923 0.00 0.00 41.51 2.29
471 472 8.977267 TTGAAATCTGGGAACATTTTGAAAAT 57.023 26.923 0.00 0.00 41.51 1.82
472 473 8.977267 TGAAATCTGGGAACATTTTGAAAATT 57.023 26.923 0.00 0.00 41.51 1.82
473 474 9.054922 TGAAATCTGGGAACATTTTGAAAATTC 57.945 29.630 0.00 0.00 41.51 2.17
474 475 7.656707 AATCTGGGAACATTTTGAAAATTCG 57.343 32.000 0.00 0.00 41.51 3.34
475 476 6.155475 TCTGGGAACATTTTGAAAATTCGT 57.845 33.333 0.00 0.00 41.51 3.85
476 477 5.982516 TCTGGGAACATTTTGAAAATTCGTG 59.017 36.000 0.00 0.00 41.51 4.35
477 478 5.907207 TGGGAACATTTTGAAAATTCGTGA 58.093 33.333 0.00 0.00 33.40 4.35
478 479 6.341316 TGGGAACATTTTGAAAATTCGTGAA 58.659 32.000 0.00 0.00 33.40 3.18
479 480 6.478344 TGGGAACATTTTGAAAATTCGTGAAG 59.522 34.615 0.00 0.00 33.40 3.02
480 481 6.699642 GGGAACATTTTGAAAATTCGTGAAGA 59.300 34.615 0.00 0.00 0.00 2.87
481 482 7.223777 GGGAACATTTTGAAAATTCGTGAAGAA 59.776 33.333 0.00 0.00 43.93 2.52
496 497 9.793252 ATTCGTGAAGAATATTTGAAATTCAGG 57.207 29.630 0.00 0.59 46.99 3.86
497 498 8.560355 TCGTGAAGAATATTTGAAATTCAGGA 57.440 30.769 8.60 8.60 38.49 3.86
498 499 9.008965 TCGTGAAGAATATTTGAAATTCAGGAA 57.991 29.630 9.70 0.00 38.11 3.36
499 500 9.793252 CGTGAAGAATATTTGAAATTCAGGAAT 57.207 29.630 0.00 0.00 35.61 3.01
547 548 8.698172 AAGATTTTCGCAAATTTTGAAATTCG 57.302 26.923 13.26 6.55 37.62 3.34
548 549 8.071122 AGATTTTCGCAAATTTTGAAATTCGA 57.929 26.923 13.26 8.66 37.62 3.71
549 550 8.547069 AGATTTTCGCAAATTTTGAAATTCGAA 58.453 25.926 13.26 13.55 40.08 3.71
550 551 9.152851 GATTTTCGCAAATTTTGAAATTCGAAA 57.847 25.926 21.55 21.55 44.09 3.46
551 552 7.869121 TTTCGCAAATTTTGAAATTCGAAAC 57.131 28.000 21.55 0.00 42.72 2.78
552 553 6.820470 TCGCAAATTTTGAAATTCGAAACT 57.180 29.167 13.26 0.00 37.62 2.66
553 554 7.227992 TCGCAAATTTTGAAATTCGAAACTT 57.772 28.000 13.26 3.75 37.62 2.66
554 555 7.680062 TCGCAAATTTTGAAATTCGAAACTTT 58.320 26.923 13.26 9.36 37.62 2.66
555 556 8.171840 TCGCAAATTTTGAAATTCGAAACTTTT 58.828 25.926 13.26 6.11 37.62 2.27
556 557 8.784176 CGCAAATTTTGAAATTCGAAACTTTTT 58.216 25.926 13.26 5.50 37.62 1.94
579 580 8.457238 TTTTTAATCCCCAACCATTTTCAAAG 57.543 30.769 0.00 0.00 0.00 2.77
580 581 4.639078 AATCCCCAACCATTTTCAAAGG 57.361 40.909 0.00 0.00 0.00 3.11
581 582 3.336509 TCCCCAACCATTTTCAAAGGA 57.663 42.857 0.00 0.00 0.00 3.36
582 583 3.238597 TCCCCAACCATTTTCAAAGGAG 58.761 45.455 0.00 0.00 0.00 3.69
583 584 2.289631 CCCCAACCATTTTCAAAGGAGC 60.290 50.000 0.00 0.00 0.00 4.70
584 585 2.368221 CCCAACCATTTTCAAAGGAGCA 59.632 45.455 0.00 0.00 0.00 4.26
585 586 3.181456 CCCAACCATTTTCAAAGGAGCAA 60.181 43.478 0.00 0.00 0.00 3.91
586 587 4.450053 CCAACCATTTTCAAAGGAGCAAA 58.550 39.130 0.00 0.00 0.00 3.68
587 588 4.880696 CCAACCATTTTCAAAGGAGCAAAA 59.119 37.500 0.00 0.00 0.00 2.44
588 589 5.007921 CCAACCATTTTCAAAGGAGCAAAAG 59.992 40.000 0.00 0.00 0.00 2.27
589 590 5.612725 ACCATTTTCAAAGGAGCAAAAGA 57.387 34.783 0.00 0.00 0.00 2.52
590 591 5.988287 ACCATTTTCAAAGGAGCAAAAGAA 58.012 33.333 0.00 0.00 0.00 2.52
591 592 6.413892 ACCATTTTCAAAGGAGCAAAAGAAA 58.586 32.000 0.00 0.00 0.00 2.52
592 593 6.316140 ACCATTTTCAAAGGAGCAAAAGAAAC 59.684 34.615 0.00 0.00 0.00 2.78
593 594 6.315891 CCATTTTCAAAGGAGCAAAAGAAACA 59.684 34.615 0.00 0.00 0.00 2.83
594 595 6.966435 TTTTCAAAGGAGCAAAAGAAACAG 57.034 33.333 0.00 0.00 0.00 3.16
595 596 5.913137 TTCAAAGGAGCAAAAGAAACAGA 57.087 34.783 0.00 0.00 0.00 3.41
596 597 5.913137 TCAAAGGAGCAAAAGAAACAGAA 57.087 34.783 0.00 0.00 0.00 3.02
597 598 6.279513 TCAAAGGAGCAAAAGAAACAGAAA 57.720 33.333 0.00 0.00 0.00 2.52
598 599 6.696411 TCAAAGGAGCAAAAGAAACAGAAAA 58.304 32.000 0.00 0.00 0.00 2.29
599 600 6.813152 TCAAAGGAGCAAAAGAAACAGAAAAG 59.187 34.615 0.00 0.00 0.00 2.27
600 601 5.921962 AGGAGCAAAAGAAACAGAAAAGT 57.078 34.783 0.00 0.00 0.00 2.66
601 602 7.404671 AAGGAGCAAAAGAAACAGAAAAGTA 57.595 32.000 0.00 0.00 0.00 2.24
602 603 7.404671 AGGAGCAAAAGAAACAGAAAAGTAA 57.595 32.000 0.00 0.00 0.00 2.24
603 604 7.836842 AGGAGCAAAAGAAACAGAAAAGTAAA 58.163 30.769 0.00 0.00 0.00 2.01
604 605 7.976175 AGGAGCAAAAGAAACAGAAAAGTAAAG 59.024 33.333 0.00 0.00 0.00 1.85
605 606 7.222805 GGAGCAAAAGAAACAGAAAAGTAAAGG 59.777 37.037 0.00 0.00 0.00 3.11
606 607 6.535150 AGCAAAAGAAACAGAAAAGTAAAGGC 59.465 34.615 0.00 0.00 0.00 4.35
607 608 6.312672 GCAAAAGAAACAGAAAAGTAAAGGCA 59.687 34.615 0.00 0.00 0.00 4.75
608 609 7.148490 GCAAAAGAAACAGAAAAGTAAAGGCAA 60.148 33.333 0.00 0.00 0.00 4.52
609 610 8.716909 CAAAAGAAACAGAAAAGTAAAGGCAAA 58.283 29.630 0.00 0.00 0.00 3.68
610 611 8.840833 AAAGAAACAGAAAAGTAAAGGCAAAA 57.159 26.923 0.00 0.00 0.00 2.44
611 612 8.479313 AAGAAACAGAAAAGTAAAGGCAAAAG 57.521 30.769 0.00 0.00 0.00 2.27
612 613 7.836842 AGAAACAGAAAAGTAAAGGCAAAAGA 58.163 30.769 0.00 0.00 0.00 2.52
613 614 8.311109 AGAAACAGAAAAGTAAAGGCAAAAGAA 58.689 29.630 0.00 0.00 0.00 2.52
614 615 8.840833 AAACAGAAAAGTAAAGGCAAAAGAAA 57.159 26.923 0.00 0.00 0.00 2.52
615 616 8.840833 AACAGAAAAGTAAAGGCAAAAGAAAA 57.159 26.923 0.00 0.00 0.00 2.29
616 617 8.840833 ACAGAAAAGTAAAGGCAAAAGAAAAA 57.159 26.923 0.00 0.00 0.00 1.94
676 677 4.278513 CCTCCACGCCCCAAACCA 62.279 66.667 0.00 0.00 0.00 3.67
678 679 1.830408 CTCCACGCCCCAAACCAAA 60.830 57.895 0.00 0.00 0.00 3.28
806 873 1.408969 AACCAAACCAAACTGGCGAT 58.591 45.000 0.00 0.00 42.67 4.58
829 896 2.739704 CGCCGCAGAATCGCTTTCA 61.740 57.895 0.00 0.00 36.75 2.69
866 933 2.358984 TTTAACTCCCGCCCGTGC 60.359 61.111 0.00 0.00 0.00 5.34
912 979 2.323999 AAAACCATGCAATCCTCCCA 57.676 45.000 0.00 0.00 0.00 4.37
945 1029 0.601558 CTCCGACGACTTCCCAAGAA 59.398 55.000 0.00 0.00 0.00 2.52
947 1031 0.669625 CCGACGACTTCCCAAGAACC 60.670 60.000 0.00 0.00 0.00 3.62
1671 1773 1.566018 GCAAGCACGTGTACCACTCC 61.566 60.000 18.38 0.00 31.34 3.85
1707 1809 2.266055 CTCCGCCTCCACAACTCC 59.734 66.667 0.00 0.00 0.00 3.85
1798 1900 0.249868 CGGTGCAAGGAACAGAGACA 60.250 55.000 0.00 0.00 0.00 3.41
1799 1901 1.517242 GGTGCAAGGAACAGAGACAG 58.483 55.000 0.00 0.00 0.00 3.51
1800 1902 1.517242 GTGCAAGGAACAGAGACAGG 58.483 55.000 0.00 0.00 0.00 4.00
1801 1903 0.397941 TGCAAGGAACAGAGACAGGG 59.602 55.000 0.00 0.00 0.00 4.45
1802 1904 0.687354 GCAAGGAACAGAGACAGGGA 59.313 55.000 0.00 0.00 0.00 4.20
1803 1905 1.338579 GCAAGGAACAGAGACAGGGAG 60.339 57.143 0.00 0.00 0.00 4.30
2113 2220 9.559958 AACAGATAAAGAGTTTATTTGCATTCG 57.440 29.630 8.93 0.00 39.83 3.34
2120 2227 9.906660 AAAGAGTTTATTTGCATTCGTGATTAA 57.093 25.926 0.00 0.00 0.00 1.40
2393 2507 2.284754 TGGCAGGTAAAGCATGACAA 57.715 45.000 0.00 0.00 44.77 3.18
2501 2623 4.740741 AAAACGGCCAAAATGTAATTGC 57.259 36.364 2.24 0.00 36.10 3.56
2930 3066 9.128107 GCAACATATACATTATGCACCAAATAC 57.872 33.333 0.00 0.00 34.10 1.89
2933 3069 9.231297 ACATATACATTATGCACCAAATACTCC 57.769 33.333 0.00 0.00 0.00 3.85
2934 3070 8.677300 CATATACATTATGCACCAAATACTCCC 58.323 37.037 0.00 0.00 0.00 4.30
2935 3071 5.129368 ACATTATGCACCAAATACTCCCT 57.871 39.130 0.00 0.00 0.00 4.20
2936 3072 5.133221 ACATTATGCACCAAATACTCCCTC 58.867 41.667 0.00 0.00 0.00 4.30
2937 3073 2.736670 ATGCACCAAATACTCCCTCC 57.263 50.000 0.00 0.00 0.00 4.30
2938 3074 0.251916 TGCACCAAATACTCCCTCCG 59.748 55.000 0.00 0.00 0.00 4.63
2939 3075 0.252197 GCACCAAATACTCCCTCCGT 59.748 55.000 0.00 0.00 0.00 4.69
2940 3076 1.339727 GCACCAAATACTCCCTCCGTT 60.340 52.381 0.00 0.00 0.00 4.44
2941 3077 2.629051 CACCAAATACTCCCTCCGTTC 58.371 52.381 0.00 0.00 0.00 3.95
2942 3078 1.558294 ACCAAATACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
2943 3079 1.557832 CCAAATACTCCCTCCGTTCCA 59.442 52.381 0.00 0.00 0.00 3.53
2944 3080 2.026636 CCAAATACTCCCTCCGTTCCAA 60.027 50.000 0.00 0.00 0.00 3.53
2945 3081 3.560453 CCAAATACTCCCTCCGTTCCAAA 60.560 47.826 0.00 0.00 0.00 3.28
2946 3082 4.076394 CAAATACTCCCTCCGTTCCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
2947 3083 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2948 3084 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2949 3085 5.703730 ATACTCCCTCCGTTCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
2950 3086 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
2951 3087 3.329814 ACTCCCTCCGTTCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
2952 3088 3.681593 TCCCTCCGTTCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
2953 3089 3.328343 TCCCTCCGTTCCAAAATAAGTGA 59.672 43.478 0.00 0.00 0.00 3.41
2954 3090 3.439129 CCCTCCGTTCCAAAATAAGTGAC 59.561 47.826 0.00 0.00 0.00 3.67
2955 3091 4.324267 CCTCCGTTCCAAAATAAGTGACT 58.676 43.478 0.00 0.00 0.00 3.41
2956 3092 4.392138 CCTCCGTTCCAAAATAAGTGACTC 59.608 45.833 0.00 0.00 0.00 3.36
2957 3093 4.963373 TCCGTTCCAAAATAAGTGACTCA 58.037 39.130 0.00 0.00 0.00 3.41
2958 3094 5.369833 TCCGTTCCAAAATAAGTGACTCAA 58.630 37.500 0.00 0.00 0.00 3.02
2959 3095 5.237779 TCCGTTCCAAAATAAGTGACTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
2960 3096 5.238650 CCGTTCCAAAATAAGTGACTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
2961 3097 6.238648 CCGTTCCAAAATAAGTGACTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
2962 3098 7.193595 CGTTCCAAAATAAGTGACTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
2963 3099 7.165812 CGTTCCAAAATAAGTGACTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
2964 3100 7.639113 TCCAAAATAAGTGACTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
2965 3101 8.740123 TCCAAAATAAGTGACTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
2966 3102 8.617809 TCCAAAATAAGTGACTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
2967 3103 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2973 3109 8.788325 AAGTGACTCAACTTTGTACTAAGTTT 57.212 30.769 26.14 15.97 43.85 2.66
2974 3110 9.880157 AAGTGACTCAACTTTGTACTAAGTTTA 57.120 29.630 26.14 19.67 43.85 2.01
2975 3111 9.530633 AGTGACTCAACTTTGTACTAAGTTTAG 57.469 33.333 27.69 27.69 43.85 1.85
2976 3112 9.310716 GTGACTCAACTTTGTACTAAGTTTAGT 57.689 33.333 31.64 31.64 46.91 2.24
3000 3136 6.811253 ACAAAGTTGTACAAAGTTGAGTCA 57.189 33.333 27.10 0.00 40.16 3.41
3001 3137 6.608610 ACAAAGTTGTACAAAGTTGAGTCAC 58.391 36.000 27.10 8.64 40.16 3.67
3002 3138 6.430000 ACAAAGTTGTACAAAGTTGAGTCACT 59.570 34.615 27.10 10.46 40.16 3.41
3003 3139 7.040686 ACAAAGTTGTACAAAGTTGAGTCACTT 60.041 33.333 27.10 14.75 40.16 3.16
3004 3140 8.447833 CAAAGTTGTACAAAGTTGAGTCACTTA 58.552 33.333 20.34 0.00 35.87 2.24
3005 3141 8.732746 AAGTTGTACAAAGTTGAGTCACTTAT 57.267 30.769 10.51 0.00 35.87 1.73
3006 3142 8.732746 AGTTGTACAAAGTTGAGTCACTTATT 57.267 30.769 10.51 0.00 35.87 1.40
3007 3143 9.174166 AGTTGTACAAAGTTGAGTCACTTATTT 57.826 29.630 10.51 0.00 35.87 1.40
3008 3144 9.783256 GTTGTACAAAGTTGAGTCACTTATTTT 57.217 29.630 10.51 0.00 35.87 1.82
3009 3145 9.781834 TTGTACAAAGTTGAGTCACTTATTTTG 57.218 29.630 5.64 8.80 35.87 2.44
3010 3146 8.402472 TGTACAAAGTTGAGTCACTTATTTTGG 58.598 33.333 12.94 0.78 35.87 3.28
3011 3147 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
3012 3148 6.183360 ACAAAGTTGAGTCACTTATTTTGGGG 60.183 38.462 12.94 0.00 35.87 4.96
3013 3149 3.826729 AGTTGAGTCACTTATTTTGGGGC 59.173 43.478 0.00 0.00 0.00 5.80
3014 3150 2.432444 TGAGTCACTTATTTTGGGGCG 58.568 47.619 0.00 0.00 0.00 6.13
3015 3151 1.743394 GAGTCACTTATTTTGGGGCGG 59.257 52.381 0.00 0.00 0.00 6.13
3016 3152 1.353022 AGTCACTTATTTTGGGGCGGA 59.647 47.619 0.00 0.00 0.00 5.54
3017 3153 1.743394 GTCACTTATTTTGGGGCGGAG 59.257 52.381 0.00 0.00 0.00 4.63
3018 3154 1.102978 CACTTATTTTGGGGCGGAGG 58.897 55.000 0.00 0.00 0.00 4.30
3019 3155 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.000 0.00 0.00 0.00 4.30
3020 3156 0.257616 CTTATTTTGGGGCGGAGGGA 59.742 55.000 0.00 0.00 0.00 4.20
3021 3157 0.257616 TTATTTTGGGGCGGAGGGAG 59.742 55.000 0.00 0.00 0.00 4.30
3022 3158 0.917333 TATTTTGGGGCGGAGGGAGT 60.917 55.000 0.00 0.00 0.00 3.85
3023 3159 0.917333 ATTTTGGGGCGGAGGGAGTA 60.917 55.000 0.00 0.00 0.00 2.59
3036 3172 4.120589 GGAGGGAGTATCATCAAAACGAC 58.879 47.826 0.00 0.00 36.25 4.34
3059 3195 7.447238 CGACCTCCCCATGTTTATTTGTTATAT 59.553 37.037 0.00 0.00 0.00 0.86
3069 3205 9.720769 ATGTTTATTTGTTATATACTCCCTCCG 57.279 33.333 0.00 0.00 0.00 4.63
3073 3209 3.771216 TGTTATATACTCCCTCCGTCCC 58.229 50.000 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.433716 TCTGTGAATTTGAACAATATGAGGCA 59.566 34.615 0.00 0.00 0.00 4.75
1 2 6.855836 TCTGTGAATTTGAACAATATGAGGC 58.144 36.000 0.00 0.00 0.00 4.70
6 7 9.669353 GCGAATATCTGTGAATTTGAACAATAT 57.331 29.630 0.00 0.00 0.00 1.28
7 8 8.128582 GGCGAATATCTGTGAATTTGAACAATA 58.871 33.333 0.00 0.00 0.00 1.90
8 9 6.974622 GGCGAATATCTGTGAATTTGAACAAT 59.025 34.615 0.00 0.00 0.00 2.71
9 10 6.321717 GGCGAATATCTGTGAATTTGAACAA 58.678 36.000 0.00 0.00 0.00 2.83
10 11 5.447144 CGGCGAATATCTGTGAATTTGAACA 60.447 40.000 0.00 0.00 0.00 3.18
11 12 4.963953 CGGCGAATATCTGTGAATTTGAAC 59.036 41.667 0.00 0.00 0.00 3.18
12 13 4.873259 TCGGCGAATATCTGTGAATTTGAA 59.127 37.500 7.35 0.00 0.00 2.69
13 14 4.438148 TCGGCGAATATCTGTGAATTTGA 58.562 39.130 7.35 0.00 0.00 2.69
14 15 4.794248 TCGGCGAATATCTGTGAATTTG 57.206 40.909 7.35 0.00 0.00 2.32
15 16 5.751680 CATTCGGCGAATATCTGTGAATTT 58.248 37.500 32.07 6.26 30.44 1.82
16 17 4.319766 GCATTCGGCGAATATCTGTGAATT 60.320 41.667 32.07 6.47 30.44 2.17
17 18 3.187227 GCATTCGGCGAATATCTGTGAAT 59.813 43.478 32.07 7.02 30.44 2.57
18 19 2.543848 GCATTCGGCGAATATCTGTGAA 59.456 45.455 32.07 3.73 30.44 3.18
19 20 2.135139 GCATTCGGCGAATATCTGTGA 58.865 47.619 32.07 4.56 30.44 3.58
20 21 2.584166 GCATTCGGCGAATATCTGTG 57.416 50.000 32.07 21.90 30.44 3.66
31 32 9.934190 AATTTTAAAAATATTCATGCATTCGGC 57.066 25.926 4.44 0.00 45.13 5.54
75 76 9.487790 CCCGGCATTTAAAAATATATTCACAAT 57.512 29.630 0.00 0.00 0.00 2.71
76 77 8.696374 TCCCGGCATTTAAAAATATATTCACAA 58.304 29.630 0.00 0.00 0.00 3.33
77 78 8.239038 TCCCGGCATTTAAAAATATATTCACA 57.761 30.769 0.00 0.00 0.00 3.58
78 79 8.573035 TCTCCCGGCATTTAAAAATATATTCAC 58.427 33.333 0.00 0.00 0.00 3.18
79 80 8.698973 TCTCCCGGCATTTAAAAATATATTCA 57.301 30.769 0.00 0.00 0.00 2.57
84 85 9.679661 AAAAATTCTCCCGGCATTTAAAAATAT 57.320 25.926 0.00 0.00 0.00 1.28
86 87 7.994425 AAAAATTCTCCCGGCATTTAAAAAT 57.006 28.000 0.00 0.00 0.00 1.82
151 152 9.913451 GATTTTGAAAAATGTTCACGAATTTGA 57.087 25.926 5.76 0.00 38.64 2.69
152 153 9.699985 TGATTTTGAAAAATGTTCACGAATTTG 57.300 25.926 5.76 0.00 38.64 2.32
153 154 9.701355 GTGATTTTGAAAAATGTTCACGAATTT 57.299 25.926 5.76 0.00 38.64 1.82
154 155 8.877779 TGTGATTTTGAAAAATGTTCACGAATT 58.122 25.926 13.96 0.00 37.84 2.17
155 156 8.417780 TGTGATTTTGAAAAATGTTCACGAAT 57.582 26.923 13.96 0.00 37.84 3.34
156 157 7.818493 TGTGATTTTGAAAAATGTTCACGAA 57.182 28.000 13.96 0.26 37.84 3.85
157 158 7.818493 TTGTGATTTTGAAAAATGTTCACGA 57.182 28.000 13.96 10.90 37.84 4.35
158 159 7.954248 TGTTTGTGATTTTGAAAAATGTTCACG 59.046 29.630 13.96 0.00 37.84 4.35
159 160 9.771915 ATGTTTGTGATTTTGAAAAATGTTCAC 57.228 25.926 12.68 12.68 38.64 3.18
173 174 9.545105 TGCTATTTCAGAAAATGTTTGTGATTT 57.455 25.926 0.00 0.00 35.84 2.17
174 175 9.545105 TTGCTATTTCAGAAAATGTTTGTGATT 57.455 25.926 0.00 0.00 35.84 2.57
175 176 9.545105 TTTGCTATTTCAGAAAATGTTTGTGAT 57.455 25.926 0.00 0.00 35.84 3.06
176 177 8.816144 GTTTGCTATTTCAGAAAATGTTTGTGA 58.184 29.630 0.00 0.00 34.15 3.58
177 178 8.602328 TGTTTGCTATTTCAGAAAATGTTTGTG 58.398 29.630 0.00 0.00 34.15 3.33
178 179 8.715191 TGTTTGCTATTTCAGAAAATGTTTGT 57.285 26.923 0.00 0.00 34.15 2.83
218 219 7.753659 TCCATAAATGTTCGCGAATCTAAAAA 58.246 30.769 26.23 8.17 0.00 1.94
219 220 7.310072 TCCATAAATGTTCGCGAATCTAAAA 57.690 32.000 26.23 9.81 0.00 1.52
220 221 6.912203 TCCATAAATGTTCGCGAATCTAAA 57.088 33.333 26.23 11.44 0.00 1.85
221 222 6.912203 TTCCATAAATGTTCGCGAATCTAA 57.088 33.333 26.23 11.61 0.00 2.10
222 223 7.490962 AATTCCATAAATGTTCGCGAATCTA 57.509 32.000 26.23 14.81 0.00 1.98
223 224 6.377327 AATTCCATAAATGTTCGCGAATCT 57.623 33.333 26.23 12.52 0.00 2.40
224 225 6.560251 GCAAATTCCATAAATGTTCGCGAATC 60.560 38.462 26.23 18.17 0.00 2.52
225 226 5.231991 GCAAATTCCATAAATGTTCGCGAAT 59.768 36.000 26.23 11.56 0.00 3.34
226 227 4.560819 GCAAATTCCATAAATGTTCGCGAA 59.439 37.500 19.38 19.38 0.00 4.70
227 228 4.101942 GCAAATTCCATAAATGTTCGCGA 58.898 39.130 3.71 3.71 0.00 5.87
228 229 3.856521 TGCAAATTCCATAAATGTTCGCG 59.143 39.130 0.00 0.00 0.00 5.87
229 230 5.776519 TTGCAAATTCCATAAATGTTCGC 57.223 34.783 0.00 0.00 0.00 4.70
230 231 7.114882 TGTTTGCAAATTCCATAAATGTTCG 57.885 32.000 16.21 0.00 0.00 3.95
231 232 9.896263 AAATGTTTGCAAATTCCATAAATGTTC 57.104 25.926 16.21 0.00 0.00 3.18
233 234 9.896263 GAAAATGTTTGCAAATTCCATAAATGT 57.104 25.926 16.21 0.00 0.00 2.71
234 235 9.344309 GGAAAATGTTTGCAAATTCCATAAATG 57.656 29.630 26.52 0.00 40.34 2.32
235 236 9.075678 TGGAAAATGTTTGCAAATTCCATAAAT 57.924 25.926 28.77 13.47 42.89 1.40
236 237 8.455903 TGGAAAATGTTTGCAAATTCCATAAA 57.544 26.923 28.77 14.66 42.89 1.40
237 238 8.455903 TTGGAAAATGTTTGCAAATTCCATAA 57.544 26.923 31.08 21.10 44.95 1.90
238 239 8.455903 TTTGGAAAATGTTTGCAAATTCCATA 57.544 26.923 31.08 26.23 44.95 2.74
239 240 6.956202 TTGGAAAATGTTTGCAAATTCCAT 57.044 29.167 31.08 20.98 44.95 3.41
240 241 6.764308 TTTGGAAAATGTTTGCAAATTCCA 57.236 29.167 28.77 28.77 44.45 3.53
245 246 6.092670 TCGTGAATTTGGAAAATGTTTGCAAA 59.907 30.769 18.51 18.51 42.34 3.68
246 247 5.582269 TCGTGAATTTGGAAAATGTTTGCAA 59.418 32.000 0.00 0.00 0.00 4.08
247 248 5.111989 TCGTGAATTTGGAAAATGTTTGCA 58.888 33.333 0.00 0.00 0.00 4.08
248 249 5.649602 TCGTGAATTTGGAAAATGTTTGC 57.350 34.783 0.00 0.00 0.00 3.68
249 250 7.405469 TGATCGTGAATTTGGAAAATGTTTG 57.595 32.000 0.00 0.00 0.00 2.93
250 251 8.606040 ATTGATCGTGAATTTGGAAAATGTTT 57.394 26.923 0.00 0.00 0.00 2.83
251 252 8.606040 AATTGATCGTGAATTTGGAAAATGTT 57.394 26.923 0.00 0.00 0.00 2.71
252 253 8.606040 AAATTGATCGTGAATTTGGAAAATGT 57.394 26.923 2.38 0.00 32.89 2.71
253 254 9.320406 CAAAATTGATCGTGAATTTGGAAAATG 57.680 29.630 3.70 0.00 34.09 2.32
254 255 9.270640 TCAAAATTGATCGTGAATTTGGAAAAT 57.729 25.926 4.94 0.00 32.25 1.82
255 256 8.654230 TCAAAATTGATCGTGAATTTGGAAAA 57.346 26.923 4.94 0.00 32.25 2.29
256 257 8.654230 TTCAAAATTGATCGTGAATTTGGAAA 57.346 26.923 13.35 3.91 38.73 3.13
257 258 8.654230 TTTCAAAATTGATCGTGAATTTGGAA 57.346 26.923 12.34 12.34 39.41 3.53
258 259 8.830201 ATTTCAAAATTGATCGTGAATTTGGA 57.170 26.923 3.70 3.71 37.00 3.53
259 260 8.710551 TGATTTCAAAATTGATCGTGAATTTGG 58.289 29.630 3.70 1.73 37.00 3.28
262 263 9.642327 TCATGATTTCAAAATTGATCGTGAATT 57.358 25.926 14.68 0.00 38.38 2.17
263 264 9.642327 TTCATGATTTCAAAATTGATCGTGAAT 57.358 25.926 20.19 8.93 41.96 2.57
264 265 8.914654 GTTCATGATTTCAAAATTGATCGTGAA 58.085 29.630 20.19 20.19 43.18 3.18
265 266 8.081025 TGTTCATGATTTCAAAATTGATCGTGA 58.919 29.630 13.67 13.67 39.01 4.35
266 267 8.230112 TGTTCATGATTTCAAAATTGATCGTG 57.770 30.769 0.00 10.60 35.80 4.35
267 268 8.991243 ATGTTCATGATTTCAAAATTGATCGT 57.009 26.923 0.00 0.00 37.00 3.73
378 379 5.751028 TGTTCACGAATTTGGGAAAATGTTC 59.249 36.000 12.09 0.00 0.00 3.18
379 380 5.665459 TGTTCACGAATTTGGGAAAATGTT 58.335 33.333 12.09 0.00 0.00 2.71
380 381 5.269505 TGTTCACGAATTTGGGAAAATGT 57.730 34.783 12.09 0.00 0.00 2.71
381 382 6.595772 TTTGTTCACGAATTTGGGAAAATG 57.404 33.333 12.09 0.00 0.00 2.32
382 383 7.800155 AATTTGTTCACGAATTTGGGAAAAT 57.200 28.000 12.09 6.83 36.76 1.82
383 384 7.617041 AAATTTGTTCACGAATTTGGGAAAA 57.383 28.000 12.09 4.04 44.18 2.29
384 385 7.334421 TCAAAATTTGTTCACGAATTTGGGAAA 59.666 29.630 12.09 0.00 44.76 3.13
385 386 6.818644 TCAAAATTTGTTCACGAATTTGGGAA 59.181 30.769 15.63 6.25 44.76 3.97
386 387 6.341316 TCAAAATTTGTTCACGAATTTGGGA 58.659 32.000 15.63 13.62 44.76 4.37
387 388 6.595772 TCAAAATTTGTTCACGAATTTGGG 57.404 33.333 15.63 12.07 44.76 4.12
388 389 9.157259 GATTTCAAAATTTGTTCACGAATTTGG 57.843 29.630 15.63 13.51 44.76 3.28
389 390 9.919348 AGATTTCAAAATTTGTTCACGAATTTG 57.081 25.926 15.63 11.13 44.76 2.32
390 391 9.919348 CAGATTTCAAAATTTGTTCACGAATTT 57.081 25.926 10.86 10.86 46.45 1.82
391 392 9.311916 TCAGATTTCAAAATTTGTTCACGAATT 57.688 25.926 5.56 0.00 40.65 2.17
392 393 8.870160 TCAGATTTCAAAATTTGTTCACGAAT 57.130 26.923 5.56 0.00 33.59 3.34
393 394 8.187480 TCTCAGATTTCAAAATTTGTTCACGAA 58.813 29.630 5.56 0.00 33.59 3.85
394 395 7.702386 TCTCAGATTTCAAAATTTGTTCACGA 58.298 30.769 5.56 3.12 33.59 4.35
395 396 7.357859 GCTCTCAGATTTCAAAATTTGTTCACG 60.358 37.037 5.56 0.00 33.59 4.35
396 397 7.436080 TGCTCTCAGATTTCAAAATTTGTTCAC 59.564 33.333 5.56 0.00 33.59 3.18
397 398 7.490840 TGCTCTCAGATTTCAAAATTTGTTCA 58.509 30.769 5.56 0.00 33.59 3.18
398 399 7.935338 TGCTCTCAGATTTCAAAATTTGTTC 57.065 32.000 5.56 2.49 33.59 3.18
399 400 8.897872 AATGCTCTCAGATTTCAAAATTTGTT 57.102 26.923 5.56 0.00 33.59 2.83
400 401 8.897872 AAATGCTCTCAGATTTCAAAATTTGT 57.102 26.923 5.56 0.00 33.59 2.83
410 411 9.696917 ACGAATTTTAAAAATGCTCTCAGATTT 57.303 25.926 4.44 0.00 0.00 2.17
411 412 9.132521 CACGAATTTTAAAAATGCTCTCAGATT 57.867 29.630 4.44 0.00 0.00 2.40
412 413 8.514594 TCACGAATTTTAAAAATGCTCTCAGAT 58.485 29.630 4.44 0.00 0.00 2.90
413 414 7.870826 TCACGAATTTTAAAAATGCTCTCAGA 58.129 30.769 4.44 0.00 0.00 3.27
414 415 8.420189 GTTCACGAATTTTAAAAATGCTCTCAG 58.580 33.333 4.44 0.00 0.00 3.35
415 416 7.918033 TGTTCACGAATTTTAAAAATGCTCTCA 59.082 29.630 4.44 0.00 0.00 3.27
416 417 8.280909 TGTTCACGAATTTTAAAAATGCTCTC 57.719 30.769 4.44 0.00 0.00 3.20
417 418 8.641499 TTGTTCACGAATTTTAAAAATGCTCT 57.359 26.923 4.44 0.00 0.00 4.09
418 419 9.862585 AATTGTTCACGAATTTTAAAAATGCTC 57.137 25.926 4.44 0.00 0.00 4.26
429 430 9.919348 CAGATTTCAAAAATTGTTCACGAATTT 57.081 25.926 0.00 0.00 35.06 1.82
430 431 8.550376 CCAGATTTCAAAAATTGTTCACGAATT 58.450 29.630 0.00 0.00 0.00 2.17
431 432 7.171337 CCCAGATTTCAAAAATTGTTCACGAAT 59.829 33.333 0.00 0.00 0.00 3.34
432 433 6.478344 CCCAGATTTCAAAAATTGTTCACGAA 59.522 34.615 0.00 0.00 0.00 3.85
433 434 5.982516 CCCAGATTTCAAAAATTGTTCACGA 59.017 36.000 0.00 0.00 0.00 4.35
434 435 5.982516 TCCCAGATTTCAAAAATTGTTCACG 59.017 36.000 0.00 0.00 0.00 4.35
435 436 7.279758 TGTTCCCAGATTTCAAAAATTGTTCAC 59.720 33.333 0.00 0.00 0.00 3.18
436 437 7.334090 TGTTCCCAGATTTCAAAAATTGTTCA 58.666 30.769 0.00 0.00 0.00 3.18
437 438 7.784633 TGTTCCCAGATTTCAAAAATTGTTC 57.215 32.000 0.00 0.00 0.00 3.18
438 439 8.750515 AATGTTCCCAGATTTCAAAAATTGTT 57.249 26.923 0.00 0.00 0.00 2.83
439 440 8.750515 AAATGTTCCCAGATTTCAAAAATTGT 57.249 26.923 0.00 0.00 0.00 2.71
440 441 9.453325 CAAAATGTTCCCAGATTTCAAAAATTG 57.547 29.630 0.00 0.00 0.00 2.32
441 442 9.406113 TCAAAATGTTCCCAGATTTCAAAAATT 57.594 25.926 0.00 0.00 0.00 1.82
442 443 8.977267 TCAAAATGTTCCCAGATTTCAAAAAT 57.023 26.923 0.00 0.00 0.00 1.82
443 444 8.798859 TTCAAAATGTTCCCAGATTTCAAAAA 57.201 26.923 0.00 0.00 0.00 1.94
444 445 8.798859 TTTCAAAATGTTCCCAGATTTCAAAA 57.201 26.923 0.00 0.00 0.00 2.44
445 446 8.798859 TTTTCAAAATGTTCCCAGATTTCAAA 57.201 26.923 0.00 0.00 0.00 2.69
446 447 8.977267 ATTTTCAAAATGTTCCCAGATTTCAA 57.023 26.923 0.00 0.00 0.00 2.69
447 448 8.977267 AATTTTCAAAATGTTCCCAGATTTCA 57.023 26.923 0.00 0.00 0.00 2.69
448 449 8.223100 CGAATTTTCAAAATGTTCCCAGATTTC 58.777 33.333 0.00 0.00 0.00 2.17
449 450 7.714813 ACGAATTTTCAAAATGTTCCCAGATTT 59.285 29.630 0.00 0.00 0.00 2.17
450 451 7.171337 CACGAATTTTCAAAATGTTCCCAGATT 59.829 33.333 0.00 0.00 0.00 2.40
451 452 6.646240 CACGAATTTTCAAAATGTTCCCAGAT 59.354 34.615 0.00 0.00 0.00 2.90
452 453 5.982516 CACGAATTTTCAAAATGTTCCCAGA 59.017 36.000 0.00 0.00 0.00 3.86
453 454 5.982516 TCACGAATTTTCAAAATGTTCCCAG 59.017 36.000 0.00 0.00 0.00 4.45
454 455 5.907207 TCACGAATTTTCAAAATGTTCCCA 58.093 33.333 0.00 0.00 0.00 4.37
455 456 6.699642 TCTTCACGAATTTTCAAAATGTTCCC 59.300 34.615 0.00 0.00 0.00 3.97
456 457 7.692908 TCTTCACGAATTTTCAAAATGTTCC 57.307 32.000 0.00 0.00 0.00 3.62
470 471 9.793252 CCTGAATTTCAAATATTCTTCACGAAT 57.207 29.630 0.01 0.00 44.35 3.34
471 472 9.008965 TCCTGAATTTCAAATATTCTTCACGAA 57.991 29.630 0.01 0.00 34.00 3.85
472 473 8.560355 TCCTGAATTTCAAATATTCTTCACGA 57.440 30.769 0.01 0.00 34.00 4.35
473 474 9.793252 ATTCCTGAATTTCAAATATTCTTCACG 57.207 29.630 0.01 0.00 34.00 4.35
521 522 9.790433 CGAATTTCAAAATTTGCGAAAATCTTA 57.210 25.926 19.27 3.18 38.64 2.10
522 523 8.547069 TCGAATTTCAAAATTTGCGAAAATCTT 58.453 25.926 19.27 11.62 38.64 2.40
523 524 8.071122 TCGAATTTCAAAATTTGCGAAAATCT 57.929 26.923 19.27 10.17 38.64 2.40
524 525 8.692543 TTCGAATTTCAAAATTTGCGAAAATC 57.307 26.923 15.93 15.55 39.49 2.17
525 526 8.942924 GTTTCGAATTTCAAAATTTGCGAAAAT 58.057 25.926 23.94 12.49 45.42 1.82
526 527 8.171840 AGTTTCGAATTTCAAAATTTGCGAAAA 58.828 25.926 23.94 11.12 45.42 2.29
527 528 7.680062 AGTTTCGAATTTCAAAATTTGCGAAA 58.320 26.923 21.21 21.21 43.86 3.46
528 529 7.227992 AGTTTCGAATTTCAAAATTTGCGAA 57.772 28.000 15.16 15.16 40.08 4.70
529 530 6.820470 AGTTTCGAATTTCAAAATTTGCGA 57.180 29.167 0.00 8.51 38.64 5.10
530 531 7.875306 AAAGTTTCGAATTTCAAAATTTGCG 57.125 28.000 0.00 6.73 38.64 4.85
554 555 7.503902 CCTTTGAAAATGGTTGGGGATTAAAAA 59.496 33.333 0.00 0.00 36.45 1.94
555 556 7.001073 CCTTTGAAAATGGTTGGGGATTAAAA 58.999 34.615 0.00 0.00 36.45 1.52
556 557 6.330250 TCCTTTGAAAATGGTTGGGGATTAAA 59.670 34.615 0.00 0.00 41.57 1.52
557 558 5.846714 TCCTTTGAAAATGGTTGGGGATTAA 59.153 36.000 0.00 0.00 41.57 1.40
558 559 5.407049 TCCTTTGAAAATGGTTGGGGATTA 58.593 37.500 0.00 0.00 41.57 1.75
559 560 4.238669 TCCTTTGAAAATGGTTGGGGATT 58.761 39.130 0.00 0.00 41.57 3.01
560 561 3.840078 CTCCTTTGAAAATGGTTGGGGAT 59.160 43.478 0.00 0.00 41.57 3.85
561 562 3.238597 CTCCTTTGAAAATGGTTGGGGA 58.761 45.455 0.00 0.00 41.57 4.81
562 563 2.289631 GCTCCTTTGAAAATGGTTGGGG 60.290 50.000 0.00 0.00 41.57 4.96
563 564 2.368221 TGCTCCTTTGAAAATGGTTGGG 59.632 45.455 0.00 0.00 41.57 4.12
564 565 3.749665 TGCTCCTTTGAAAATGGTTGG 57.250 42.857 0.00 0.00 41.57 3.77
565 566 5.816777 TCTTTTGCTCCTTTGAAAATGGTTG 59.183 36.000 0.00 0.00 41.57 3.77
566 567 5.988287 TCTTTTGCTCCTTTGAAAATGGTT 58.012 33.333 0.00 0.00 41.57 3.67
567 568 5.612725 TCTTTTGCTCCTTTGAAAATGGT 57.387 34.783 0.00 0.00 41.57 3.55
568 569 6.315891 TGTTTCTTTTGCTCCTTTGAAAATGG 59.684 34.615 0.00 0.00 42.17 3.16
569 570 7.278424 TCTGTTTCTTTTGCTCCTTTGAAAATG 59.722 33.333 0.00 0.00 0.00 2.32
570 571 7.330262 TCTGTTTCTTTTGCTCCTTTGAAAAT 58.670 30.769 0.00 0.00 0.00 1.82
571 572 6.696411 TCTGTTTCTTTTGCTCCTTTGAAAA 58.304 32.000 0.00 0.00 0.00 2.29
572 573 6.279513 TCTGTTTCTTTTGCTCCTTTGAAA 57.720 33.333 0.00 0.00 0.00 2.69
573 574 5.913137 TCTGTTTCTTTTGCTCCTTTGAA 57.087 34.783 0.00 0.00 0.00 2.69
574 575 5.913137 TTCTGTTTCTTTTGCTCCTTTGA 57.087 34.783 0.00 0.00 0.00 2.69
575 576 6.591448 ACTTTTCTGTTTCTTTTGCTCCTTTG 59.409 34.615 0.00 0.00 0.00 2.77
576 577 6.701340 ACTTTTCTGTTTCTTTTGCTCCTTT 58.299 32.000 0.00 0.00 0.00 3.11
577 578 6.286240 ACTTTTCTGTTTCTTTTGCTCCTT 57.714 33.333 0.00 0.00 0.00 3.36
578 579 5.921962 ACTTTTCTGTTTCTTTTGCTCCT 57.078 34.783 0.00 0.00 0.00 3.69
579 580 7.222805 CCTTTACTTTTCTGTTTCTTTTGCTCC 59.777 37.037 0.00 0.00 0.00 4.70
580 581 7.254117 GCCTTTACTTTTCTGTTTCTTTTGCTC 60.254 37.037 0.00 0.00 0.00 4.26
581 582 6.535150 GCCTTTACTTTTCTGTTTCTTTTGCT 59.465 34.615 0.00 0.00 0.00 3.91
582 583 6.312672 TGCCTTTACTTTTCTGTTTCTTTTGC 59.687 34.615 0.00 0.00 0.00 3.68
583 584 7.826260 TGCCTTTACTTTTCTGTTTCTTTTG 57.174 32.000 0.00 0.00 0.00 2.44
584 585 8.840833 TTTGCCTTTACTTTTCTGTTTCTTTT 57.159 26.923 0.00 0.00 0.00 2.27
585 586 8.840833 TTTTGCCTTTACTTTTCTGTTTCTTT 57.159 26.923 0.00 0.00 0.00 2.52
586 587 8.311109 TCTTTTGCCTTTACTTTTCTGTTTCTT 58.689 29.630 0.00 0.00 0.00 2.52
587 588 7.836842 TCTTTTGCCTTTACTTTTCTGTTTCT 58.163 30.769 0.00 0.00 0.00 2.52
588 589 8.474006 TTCTTTTGCCTTTACTTTTCTGTTTC 57.526 30.769 0.00 0.00 0.00 2.78
589 590 8.840833 TTTCTTTTGCCTTTACTTTTCTGTTT 57.159 26.923 0.00 0.00 0.00 2.83
590 591 8.840833 TTTTCTTTTGCCTTTACTTTTCTGTT 57.159 26.923 0.00 0.00 0.00 3.16
591 592 8.840833 TTTTTCTTTTGCCTTTACTTTTCTGT 57.159 26.923 0.00 0.00 0.00 3.41
629 630 2.200337 GGGAGGCGCCACTGTTTTT 61.200 57.895 31.54 4.27 38.95 1.94
630 631 2.597510 GGGAGGCGCCACTGTTTT 60.598 61.111 31.54 5.22 38.95 2.43
631 632 3.133365 AAGGGAGGCGCCACTGTTT 62.133 57.895 31.54 14.88 38.95 2.83
632 633 3.553095 GAAGGGAGGCGCCACTGTT 62.553 63.158 31.54 19.19 38.95 3.16
633 634 4.021925 GAAGGGAGGCGCCACTGT 62.022 66.667 31.54 7.63 38.95 3.55
634 635 4.785453 GGAAGGGAGGCGCCACTG 62.785 72.222 31.54 0.00 38.95 3.66
636 637 3.978571 GAAGGAAGGGAGGCGCCAC 62.979 68.421 31.54 23.95 38.95 5.01
637 638 3.717294 GAAGGAAGGGAGGCGCCA 61.717 66.667 31.54 0.00 38.95 5.69
638 639 4.491409 GGAAGGAAGGGAGGCGCC 62.491 72.222 21.89 21.89 0.00 6.53
639 640 4.491409 GGGAAGGAAGGGAGGCGC 62.491 72.222 0.00 0.00 0.00 6.53
640 641 3.798511 GGGGAAGGAAGGGAGGCG 61.799 72.222 0.00 0.00 0.00 5.52
641 642 2.286502 AGGGGAAGGAAGGGAGGC 60.287 66.667 0.00 0.00 0.00 4.70
642 643 1.694525 GGAGGGGAAGGAAGGGAGG 60.695 68.421 0.00 0.00 0.00 4.30
643 644 0.692756 GAGGAGGGGAAGGAAGGGAG 60.693 65.000 0.00 0.00 0.00 4.30
644 645 1.396594 GAGGAGGGGAAGGAAGGGA 59.603 63.158 0.00 0.00 0.00 4.20
645 646 1.694525 GGAGGAGGGGAAGGAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
676 677 2.486013 GGGAAGTAACTGTGGACGGTTT 60.486 50.000 9.22 0.00 42.39 3.27
678 679 0.683412 GGGAAGTAACTGTGGACGGT 59.317 55.000 0.00 0.00 36.96 4.83
760 827 4.395583 GTGTGCAAGCGAGGCTGC 62.396 66.667 0.00 0.00 39.62 5.25
806 873 2.353492 CGATTCTGCGGCGATCGA 60.353 61.111 21.57 6.05 42.43 3.59
829 896 1.152881 GATGGCTTTGCGGGGAGAT 60.153 57.895 0.00 0.00 0.00 2.75
947 1031 3.376935 CTAGGTGGAGTGCTGGCGG 62.377 68.421 0.00 0.00 0.00 6.13
1219 1315 0.965363 GGGTTCCCGTCGTGGTAGTA 60.965 60.000 0.00 0.00 35.15 1.82
1788 1890 1.190643 CCCTCTCCCTGTCTCTGTTC 58.809 60.000 0.00 0.00 0.00 3.18
1798 1900 2.710826 GCTCCCTCTCCCTCTCCCT 61.711 68.421 0.00 0.00 0.00 4.20
1799 1901 2.123033 GCTCCCTCTCCCTCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
1800 1902 2.123033 GGCTCCCTCTCCCTCTCC 60.123 72.222 0.00 0.00 0.00 3.71
1801 1903 2.520741 CGGCTCCCTCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
1802 1904 4.150454 CCGGCTCCCTCTCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
1843 1945 2.815211 CGGCACCATCCACGACAG 60.815 66.667 0.00 0.00 0.00 3.51
2481 2603 2.734079 CGCAATTACATTTTGGCCGTTT 59.266 40.909 0.00 0.00 0.00 3.60
2499 2621 1.265635 GTTTACATTGTGAGTGGCGCA 59.734 47.619 10.83 0.00 34.64 6.09
2501 2623 1.795872 TCGTTTACATTGTGAGTGGCG 59.204 47.619 0.00 0.00 0.00 5.69
2930 3066 3.689649 CACTTATTTTGGAACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
2931 3067 3.328343 TCACTTATTTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 0.00 4.20
2932 3068 3.439129 GTCACTTATTTTGGAACGGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
2933 3069 4.324267 AGTCACTTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
2934 3070 4.994852 TGAGTCACTTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
2935 3071 4.963373 TGAGTCACTTATTTTGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
2936 3072 5.238650 AGTTGAGTCACTTATTTTGGAACGG 59.761 40.000 0.00 0.00 0.00 4.44
2937 3073 6.300354 AGTTGAGTCACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
2938 3074 7.973944 ACAAAGTTGAGTCACTTATTTTGGAAC 59.026 33.333 12.94 0.00 35.87 3.62
2939 3075 8.062065 ACAAAGTTGAGTCACTTATTTTGGAA 57.938 30.769 12.94 0.00 35.87 3.53
2940 3076 7.639113 ACAAAGTTGAGTCACTTATTTTGGA 57.361 32.000 12.94 0.00 35.87 3.53
2941 3077 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2947 3083 9.880157 AAACTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 2.97 0.00 46.40 2.24
2948 3084 8.788325 AAACTTAGTACAAAGTTGAGTCACTT 57.212 30.769 2.97 0.00 46.40 3.16
2949 3085 9.530633 CTAAACTTAGTACAAAGTTGAGTCACT 57.469 33.333 2.97 0.00 46.40 3.41
2976 3112 7.604927 AGTGACTCAACTTTGTACAACTTTGTA 59.395 33.333 20.26 0.00 42.35 2.41
2977 3113 6.430000 AGTGACTCAACTTTGTACAACTTTGT 59.570 34.615 20.26 11.04 44.86 2.83
2978 3114 6.842163 AGTGACTCAACTTTGTACAACTTTG 58.158 36.000 8.07 13.87 0.00 2.77
2979 3115 7.448748 AAGTGACTCAACTTTGTACAACTTT 57.551 32.000 8.07 1.26 37.05 2.66
2980 3116 8.732746 ATAAGTGACTCAACTTTGTACAACTT 57.267 30.769 8.07 7.56 40.77 2.66
2981 3117 8.732746 AATAAGTGACTCAACTTTGTACAACT 57.267 30.769 8.07 0.00 40.77 3.16
2982 3118 9.783256 AAAATAAGTGACTCAACTTTGTACAAC 57.217 29.630 8.07 0.00 40.77 3.32
2983 3119 9.781834 CAAAATAAGTGACTCAACTTTGTACAA 57.218 29.630 3.59 3.59 40.77 2.41
2984 3120 8.402472 CCAAAATAAGTGACTCAACTTTGTACA 58.598 33.333 0.00 0.00 40.77 2.90
2985 3121 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2986 3122 7.013846 CCCCAAAATAAGTGACTCAACTTTGTA 59.986 37.037 0.00 0.00 40.77 2.41
2987 3123 6.183360 CCCCAAAATAAGTGACTCAACTTTGT 60.183 38.462 0.00 0.00 40.77 2.83
2988 3124 6.215845 CCCCAAAATAAGTGACTCAACTTTG 58.784 40.000 0.00 0.00 40.77 2.77
2989 3125 5.221441 GCCCCAAAATAAGTGACTCAACTTT 60.221 40.000 0.00 0.00 40.77 2.66
2990 3126 4.280929 GCCCCAAAATAAGTGACTCAACTT 59.719 41.667 0.00 0.00 42.89 2.66
2991 3127 3.826729 GCCCCAAAATAAGTGACTCAACT 59.173 43.478 0.00 0.00 0.00 3.16
2992 3128 3.365969 CGCCCCAAAATAAGTGACTCAAC 60.366 47.826 0.00 0.00 0.00 3.18
2993 3129 2.817258 CGCCCCAAAATAAGTGACTCAA 59.183 45.455 0.00 0.00 0.00 3.02
2994 3130 2.432444 CGCCCCAAAATAAGTGACTCA 58.568 47.619 0.00 0.00 0.00 3.41
2995 3131 1.743394 CCGCCCCAAAATAAGTGACTC 59.257 52.381 0.00 0.00 0.00 3.36
2996 3132 1.353022 TCCGCCCCAAAATAAGTGACT 59.647 47.619 0.00 0.00 0.00 3.41
2997 3133 1.743394 CTCCGCCCCAAAATAAGTGAC 59.257 52.381 0.00 0.00 0.00 3.67
2998 3134 1.340600 CCTCCGCCCCAAAATAAGTGA 60.341 52.381 0.00 0.00 0.00 3.41
2999 3135 1.102978 CCTCCGCCCCAAAATAAGTG 58.897 55.000 0.00 0.00 0.00 3.16
3000 3136 0.033503 CCCTCCGCCCCAAAATAAGT 60.034 55.000 0.00 0.00 0.00 2.24
3001 3137 0.257616 TCCCTCCGCCCCAAAATAAG 59.742 55.000 0.00 0.00 0.00 1.73
3002 3138 0.257616 CTCCCTCCGCCCCAAAATAA 59.742 55.000 0.00 0.00 0.00 1.40
3003 3139 0.917333 ACTCCCTCCGCCCCAAAATA 60.917 55.000 0.00 0.00 0.00 1.40
3004 3140 0.917333 TACTCCCTCCGCCCCAAAAT 60.917 55.000 0.00 0.00 0.00 1.82
3005 3141 0.917333 ATACTCCCTCCGCCCCAAAA 60.917 55.000 0.00 0.00 0.00 2.44
3006 3142 1.307517 ATACTCCCTCCGCCCCAAA 60.308 57.895 0.00 0.00 0.00 3.28
3007 3143 1.764854 GATACTCCCTCCGCCCCAA 60.765 63.158 0.00 0.00 0.00 4.12
3008 3144 2.122989 GATACTCCCTCCGCCCCA 60.123 66.667 0.00 0.00 0.00 4.96
3009 3145 1.536662 ATGATACTCCCTCCGCCCC 60.537 63.158 0.00 0.00 0.00 5.80
3010 3146 0.832135 TGATGATACTCCCTCCGCCC 60.832 60.000 0.00 0.00 0.00 6.13
3011 3147 1.048601 TTGATGATACTCCCTCCGCC 58.951 55.000 0.00 0.00 0.00 6.13
3012 3148 2.872858 GTTTTGATGATACTCCCTCCGC 59.127 50.000 0.00 0.00 0.00 5.54
3013 3149 3.123804 CGTTTTGATGATACTCCCTCCG 58.876 50.000 0.00 0.00 0.00 4.63
3014 3150 4.120589 GTCGTTTTGATGATACTCCCTCC 58.879 47.826 0.00 0.00 0.00 4.30
3015 3151 4.120589 GGTCGTTTTGATGATACTCCCTC 58.879 47.826 0.00 0.00 0.00 4.30
3016 3152 3.775316 AGGTCGTTTTGATGATACTCCCT 59.225 43.478 0.00 0.00 0.00 4.20
3017 3153 4.120589 GAGGTCGTTTTGATGATACTCCC 58.879 47.826 0.00 0.00 0.00 4.30
3018 3154 4.120589 GGAGGTCGTTTTGATGATACTCC 58.879 47.826 0.00 0.00 35.46 3.85
3019 3155 4.120589 GGGAGGTCGTTTTGATGATACTC 58.879 47.826 0.00 0.00 0.00 2.59
3020 3156 3.118371 GGGGAGGTCGTTTTGATGATACT 60.118 47.826 0.00 0.00 0.00 2.12
3021 3157 3.203716 GGGGAGGTCGTTTTGATGATAC 58.796 50.000 0.00 0.00 0.00 2.24
3022 3158 2.841266 TGGGGAGGTCGTTTTGATGATA 59.159 45.455 0.00 0.00 0.00 2.15
3023 3159 1.633432 TGGGGAGGTCGTTTTGATGAT 59.367 47.619 0.00 0.00 0.00 2.45
3036 3172 9.807921 AGTATATAACAAATAAACATGGGGAGG 57.192 33.333 0.00 0.00 0.00 4.30
3069 3205 1.925185 GAGCGTCAAGTAATTCGGGAC 59.075 52.381 0.00 0.00 0.00 4.46
3094 3230 9.069082 AGACGTATTTTAGTGCTAGATACATCT 57.931 33.333 0.00 0.00 40.86 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.