>input_sequence_57169
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-------------------------------------------ATGATGCCCGTGTACGGCGGCG------------AGG
TGCGGCAGCGGACGTGCCGCATGTACTGGTGCTACCAGTGCGCGCGGGCGCTCCGCATCATCTCCTACCCGGCCACCGAC
GTCTTCTGCCCGCGCTGCTACGGCCGCTTCCTCCACGAGATCGACCCGCCGCCGCGCCCGGCCCTCCCCCCGCCGGGCTA
CTTCCCGCACCACTTCGCGCCGCACCCGCACGCGT------ACTACCACGACGGGAACCCGCGCCGGTGGGTCGTGTACG
GCGCCGCGCCCACGGTGCCCGGACGCCCGTTCCGCCAGCTGCCCCCGCCGGTGCGGGAGCCGGCGCCGGGGCCGACGCGG
GTCCATGCGCCGGCCCCGACGCCCCCGCCTCGCCGGCGCATGCCCTCCCCGCCGCCGGCGCCGGTGGCGCGGCGGCCGTC
CACGCCCCCGGCCATCGACCCGGGGGACTACTTCACGGGGGGCGACCTCAACCGCCTCGTGGAGGAGCTGACCCAGAACG
ACCGCCCCGGCCCCGCGCCGGCGCCCTCGTCGGCCATCGACTCGCTCCCGACGGTGCGGATCGCCGCGCAGCACCTGTCG
GACGACGGCGGGTCGCAGTGCCCCGTGTGCAAGGAGGAGTTCGAGCTCGGGGAGGCCGCGCGGCAGCTGCCGTGCAAGCA
CGTGTACCACTCCGACTGCATCGTGCCCTGGCTCCGCCTCCACAACTCCTGCCCCGTCTGCCGCTTCAAGCTGCCCGGCA
CCGGCGCCGCCTCCAGCACACGCCGCGCCAGCGGCAGCAACGGTGCAAGGAACAGAGACAGGGAGAGGGAGAGGGAGCCG
GCGACGACGGTGAGGTGGGGGCCCCTGTCGTGGATGGTGCCGGCGCGCGGGACGGAGGAGCCGGACGACGGGTGGGAGTA
CGGCCGGCGCGCGCACGGGCGCGGGCACGGCAGGCCCGAGGATGGCGACGCCGGCGGTAATGACCTGTCGGCCCTCCAGT
CTTTCGTTCTCGTCGCCACTTGCGTTTTCTTCTTCTCCTTCTTCGCCTAACAAGACCTG--CTGTGATAACTGACAACTC
TAATGTACTCCTAACA---ATCCTCAATGGAACAACAGATAAAGAGTTTATTTGCATTCGTGATTAATTTTTTTGGACTA
TATAACAGCATGTTTGTTTTAAGTTGTTTTCTTC----TGAAATTTGCTTTCAGCTTTCTACGCGTGGTGGCGCTCTCTG
TTTCTCCTCTAG--------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G309800
TGCCTCATATTGTTCAAATTCACAGATATTCGCCGAATGCATGAATATTTTTAAAATTCATACATGTTTTTTGAAATTGT
GAATATATTTTTAAATGCCGGGAGAATTTTTTTAATTGTGAACTTTTTTGCATTCATGAACATTAAAAAAATCAAATTCG
TGAACATTTTTCAAAATCACAAACATTTTCTGAAATAGCAAACATATTTTGAATTTGTTTTTTAGATTCGCGAACATTTA
TGGAATTTGCAAACATTTTCCAAATTCACGATCAATTTTGAAATCATGAACATTTTTTGTATTCACGATCATTTTTTTAA
ATCTCGTTTTTTCAAATCATCAATATTTTTTGAAATCTAGAACACTTAAAAAATTAAGGAACATTTTCCCAAATTCGTGA
ACAAATTTTGAAATCTGAGAGCATTTTTAAAATTCGTGAACAATTTTTGAAATCTGGGAACATTTTGAAAATTCGTGAAG
AATATTTGAAATTCAGGAATATTTTCAAGATCAAGAATATTTAAGATTTTCGCAAATTTTGAAATTCGAAACTTTTTTTA
ATCCCCAACCATTTTCAAAGGAGCAAAAGAAACAGAAAAGTAAAGGCAAAAGAAAAAACCGAAGAAAAAAAAAACAGTGG
CGCCTCCCTTCCTTCCCCTCCTCCACGCCCCAAACCAAACCG-----TCCACAGTTACTTCCCGCCACCGCCACCGCCAC
CTCCTC------------------------------------------------C-----CCCCCTCCCCGAGGTTTGCA
CCACGCACAAGCCAC--------AGCGCAGCCTCGCTTGCACACCACCAACCAAACCAAACCAAACTGGCGATCGATCGC
CGCAGAATCGCTTTCATCTCCCCGCAAAGCCATCCTTTAACTCCCGCCCGTGCCACGACCTCTCGCATTACCTTCCTTTA
AAACCATGCAATCCTCCCAGCCGCTCCATGCACTCCGACGAC-----------------TTCCCAAGAACCCGCCAGCAC
TCCACCTAGCGGGACGATCAAACCACCGGCCGTGTACGCGACGATGATGCCCGTGTACGGCGGCG------------AGG
TGCGGCAGCGGACGTGCCGCATGTACTGGTGCTACCAGTGCGCGCGGGCGCTCCGCATCATCTCCTACCCGGCCACCGAC
GTCTTCTGCCCGCGCTGCTACGGCCGCTTCCTCCACGAGATCGACCCGCCGCCGCGCCCGGCCCTCCCCCCGCCGGGCTA
CTTCCCGCACCACTTCGCGCCGCACCCGCACGCGT------ACTACCACGACGGGAACCCGCGCCGGTGGGTCGTGTACG
GCGCCGCGCCCACGGTGCCCGGACGCCCGTTCCGCCAGCTGCCCCCGCCGGTGCGGGAGCCGGCGCCGGGGCCGACGCGG
GTCCATGCGCCGGCCCCGACGCCCCCGCCTCGCCGGCGCATGCCCTCCCCGCCGCCGGCGCCGGTGGCGCGGCGGCCGTC
CACGCCCCCGGCCATCGACCCGGGGGACTACTTCACGGGGGGCGACCTCAACCGCCTCGTGGAGGAGCTGACCCAGAACG
ACCGCCCCGGCCCCGCGCCGGCGCCCTCGTCGGCCATCGACTCGCTCCCGACGGTGCGGATCGCCGCGCAGCACCTGTCG
GACGACGGCGGGTCGCAGTGCCCCGTGTGCAAGGAGGAGTTCGAGCTCGGGGAGGCCGCGCGGCAGCTGCCGTGCAAGCA
CGTGTACCACTCCGACTGCATCGTGCCCTGGCTCCGCCTCCACAACTCCTGCCCCGTCTGCCGCTTCAAGCTGCCCGGCA
CCGGCGCCGCCTCCAGCACACGCCGCGCCAGCGGCAGCAACGGTGCAAGGAACAGAGACAGGGAGAGGGAGAGGGAGCCG
GCGACGACGGTGAGGTGGGGGCCCCTGTCGTGGATGGTGCCGGCGCGCGGGACGGAGGAGCCGGACGACGGGTGGGAGTA
CGGCCGGCGCGCGCACGGGCGCGGGCACGGCAGGCCCGAGGATGGCGACGCCGGCGGTAATGACCTGTCGGCCCTCCAGT
CTTTCGTTCTCGTCGCCACTTGCGTTTTCTTCTTCTCCTTCTTCGCCTAACAAGACCTG--CTGTGATAACTGACAACTC
TAATGTACTCCTAACA---ATCCTCAATGGAACAACAGATAAAGAGTTTATTTGCATTCGTGATTAATTTTTTTGGACTA
TATAACAGCATGTTTGTTTTAAGTTGTTTTCTTC----TGAAATTTGCTTTCAGCTTTCTACGCGTGGTGGCGCTCTCTG
TTTCTCCTCTAGCCGTTTCCAGCCGGGATGCCAGTCACTACGCCAAAGACAACCTGAACCTGTTTGCTCAGTTAAGTCAT
CTGATCGATGCCGTGCTTGCAAATCATCAGAACACTGCCCCTGCAAATACACGCTTACTGACTTGACATTTTGTTGGC--
-TGTTAATGGCAGGTAAAGCATGACAACCGCTGTAAATAT--------TTCAACGGCAATGGTGGATGTACTGGAGAAGC
AGAGCACACTGGAAATAAAATAGGAGAATGTAATAGTGCAAAAAACGGCCAAAATGTAATTGCGCCACTCACAATGTAAA
CGATACAAAGAGTTGTGATTTTCATTTTTAGCTCAGTTGAGCGGATTTATCTAGCGGCTGAAGCAATCT-----------
--CAAAGCAAAACGTGAAAGCAATTGAGCAAATCCAAAAGAAAAGAACTATCACAAAGGCTTAAGGTGATACATTCGATC
GAATCATTCAACATAATAAGTA-TATATGGTATGGTTTGATTTTACACCGAGGGGCATACAAAAATTGACTGAATCAGCT
CACTGTCTCCTATATCAATGTAACCGACTATTTCCGGGAGGGCATCCCACCTAAACCCGACTTGAGCATGGTATCAAAGC
CAGCGTGAAATCCTGCAGTGTATGCCATGTTTTTGAACATGTTCTGCATTAAAAACATTTGCATTAGACATCTGCCGTCG
CAACATATACATTATGCACCAAATACTCCCTCCGTTCCAAAATAAGTGACTCAACTTTGTACTAAGTTTAGTACAAAGTT
GTACAAAGTTGAGTCACTTATTTTGGGGCGGAGGGAGTATCATCAAAACGACCTCCCCATGTTTATTTGTTATATACTCC
CTCCGTCCCGAATTACTTGACGCTCAAGCAGATGTATCTAGCACTAAAATACGTCTAGACACATCCAGTTGAGCGCCAAG
CAATTCC-GGACGGAGGAAGTATTATATAGGGGCAAATTAGCATTCTGGATCAGGTTAATCGAAATCTAAACTGCAAT
>chr6A_647
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------CCTTCCTTCCCCTCCTCCACGCCCCAAACCGAGCCG-----TCCACAGTTACTTCCCGCCACCGCCACCGCCAC
CTCCTCGCTCCGCCCTTCATCCTCCTCTTCCTCCTGGCCGGCAAGCAACCACAACCAGCTCCCCCTCCCCGAGGTTTGCA
CCACGCACAAGCCAC--------AGCACAGCCTCGCTTGCACACCACCAGCCAAAGCAAAGTGGCA---------ATCGC
CGCGGAATCGCTTTCTTCTCCCCGCAAAGCCATCCTTTAATTCCCGCCCGTGTCACGATCTCTCGCAGTGCCTTCCTTTA
AAACCATGCAATCCTCCT----GCTCCATGCACTCCGACGACGCG----GTCTGTCAACTTCCCAAGACCTTGCCAGCAC
TCAACCTAG---------------------------CGGGACGATGATGCCTGTGTACGGCGGCGGTGGCGGGGGGCAGG
CGCGGCAGCGGACGTGCCGCATGTACTGGTGCTACGAGTGCGCGCGGGCGCTCCGCATCATCTCCTACCCGGCCACCGAC
GTCTTCTGCCCGCGCTGCTACGGCCGCTTCCTCCACGAGATCGACCCGCCGCCGCGCCCAGCGCTCCCCCCGCCGGGCTA
CTTCCCGCACCACTTCGCGCCGCACCCGTACCCGCACCCGCACTACCACGACGGGAACCCGCGCCGGTGGGTCGTGTACG
GCGCCGCGCCCACGGTGCCCGGGCGCCCGTTCCGGCAGCTGCCTCCGCCGGTGCGGGAGCCG------------ACGCGG
GTCCATGCGCCGGCCCCGACGCCCCCGCCTCGCCGGCGCATGCCCTCCCCGCCGCCGGCGCCGGTGGCGCGGCGGCCGGC
CACGCCCCCGGCCATCGACCCGGGGGACTACTTCACGGGGGGCGACCTCAACCGCCTGGTGGAGGAGCTGACCCAGAACG
ACCGGCCGGGCCCGGCGCCGGCCCCCACGTCGGCCATCGACTCGCTCCCGACGGTGCGGATCGCCGCGCAGCACCTGTCG
GACGACGGCGGGTCGCAGTGCCCCGTGTGCAAGGAGGAGTTCGAGCTCGGGGAGGCGGCGCGGCAGCTGCCGTGCAAGCA
CGTGTACCACTCGGACTGCATCGTGCCCTGGCTCCGCCTCCACAACTCGTGCCCCGTCTGCCGCTTCAAGCTGCCCGGCA
CCGGCGCCGCCTCCAGCACACGTCGCCCCAGCGGCAGCAACGGTGCAAGAAACAGAGAC------AGGGAGAGGGAGCCG
GCGACGACGGTGAGGTGGGGGCCGTTGTCGTGGATGGTGCCGGCGCGCGGGACGGAGGACGCGGACGACGGGTGGGAGTA
CGGCCGGCGCGGA------------CACGGCAGGCCCGAGGATGGCGACGCCGGCGGTAATGACCTGTCGGCCCTCCAGT
CTTTCGTTCTCGTCGCCACTTGCGTTTTCTTCTTCTCCTTCTTCGCCTAACAAGACCTATACTGTGATAACTGACAACTC
TAATGTACTCCTAGTAATAATAATCAATGGAAGAACAGATAACGAGTTTATTTGCATTCTTGACTTTCTTTGTTGGACTA
TATAACAGCATGCTTGTTTTAAGTTGTTTTCTTC----TGAATTTTTCTTTCAGCTTTCTACGCGTGGTGGCGCTCTCTG
TTTCTCCTCTAGCCGTTTCCAGCCGGGATGCCAGTCCCTACGCCAAAGACAACCTGAACCTGTTTGCTCAGTTAAGTCAT
CTGATCGATGCCGTGCTTGCAACTCATCAGAACACTGCCCCTGCAAATACGCGCTTACTGACTTGACATTTTGTTGGC--
-TGTTACTGGCAGGTAAAGCATGACAGCCGCTGTAAATAT--------TTCAACGGCAATGGTGGATGTACCGGAGAAGC
AGAGCACACTGGAAATAAAATAGGAGAATGTAATAGTGCAAAGAACGGCCAAAATGTAATCGTGCCACCCACAATGTAAA
CGATACAAAGAGTTGTGATTTTCATTTTTAGCTCAGTTGAGCGGATTTATCTAGCGGCTGAAGCAATCTGCGCAGC-AAT
CTCAAAGCAATACGTGAAAGCAATTGAGCAAATCCAAAAGAAAAGAACTATCACAAAGGCTTAAGGTGATACATTCGATC
GAATCATTCAACATAATAAGTA-TGTATGGTATGGTTTGATTTTACTCCGAGGGGCATACAAAAATCGACTGAATCAGCT
CACTGTCTCCTATATCAATGTAACCGACTATTTCCGGGAGGGCATCCCACCTAAACCCGACTTGAGCATGGTATCAAAGC
CAGCATGAAATCCTGCAGTGTATGCTGCGTTTTTGAACATATTCTGCATTAAAAACATTTGCATTAGACATTTGCCGTAG
CAACGTATACATTATGCACCAAATA-------------------------------------------------------
---------------------------------------TCGACCT---------CCCCTGTTTATTTGTTAC--ACTCC
CTCCATCCGGAATTACTTGACGCTCAAGCGGATGTATCTAGCACTAAAATACGTCTAGACACATCCAGTTGAGCGCCATG
CAATTCC-GGACGGAGGAAGTATTATATAGGGGCAAATTAGCATTCTGGATCAGGTTAATCAAAATCTAAACTGCAAT
>chr6B_647
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------CCTTCCTTCCCCTCCTCCACGCCCCAAACCGAGCCGAGCCGTCCACAGTTACTTCCCGCCACCGCCACCGCCAC
CTCCTCGCTCCGCCCTTCATCCTCCTCTTCCTCCTGGCCGGCAAGCAACCAGCTC-----CCCCATCCCCGAGGTTTGCA
CCACGCACAAGTCACCCGCGGCCAGCACGGCCTCCCTTGCACACCACCAACCAAACCAAACCAAACTGGCGAACGATCGC
CGCAGAATCGCTTTCTTCTCCCCGCAAAGCCATCCTTTAACTCCCGCCCGTGTCACGACCTCTCGCATGACCTTCCTTTA
AAACCATGCAACCCTCCCGGCCGCTCCATGCATTCCGACGACGCGATCCGTCTGTCGACTTCCCAAGACTTCGCCAGCAC
TCCACCTAGCGGGACGATCAAACCACCGGCCGTGTACGCGACGATGATGCCCGTGTACGGCGGCGGCGGC------CAGG
TGCGGCAGCGGACGTGCCGCATGTACTGGTGCTACCAGTGCGCGCGGGCACTCCGCATCATCTCCTACCCGGCCACCGAC
GTCTTCTGCCCGCGCTGCTACGGCCGCTTCCTCCACGAGATCGACCCGCCGCCGCGCCCGGCACTCCCGCCTCCGGGCTA
CTTCCCGCACCACTTCGCGCCGCACCCGCACGCGCACCCGCACTACCACGACGGGAACCCGCGCCGGTGGGTCGTGTATG
GCGCCGCGCCCTCGGTGCCCGGACGCCCGTTCCGGCAGCTGCCTCCGCCGGTGCGGGAGCCG------------ACGCTG
GTCCACGCGCCGGCTCCGGCGCCCCCACCTCGCCGGCGGGTGCCCTCCCCGCCTCCGGCTCCGGTGGCGCGGCGGCCGTC
CACGCCGCCGGCCATCGACCCGGGGGACTACTTCACGGGGGGCGACCTCAACCGGCTCGTGGAGGAGCTGACCCAGAACG
ACCGCCCTGGCCCCGCCCCGGCGCCCACGTCGGCCATCGACTCGCTCCCGACGGTGCGGATCGCCACGCAGCACCTGTCG
GACGACGGCGGGTCGCAGTGCCCCGTGTGCAAGGAGGAGTTCGAGCTCGGGGAGGCGGCGCGGCAGCTGCCGTGCAAGCA
CGTGTACCACTCGGACTGCATCGTGCCATGGCTCTGCCTCCACAACTCGTGCCCCGTCTGCCGCTTCAAGCTGCCCGGCA
CCGCCGCCGCCTCCAGCACACGCCGCGCCAGCGGCAGCAACGGTGCAAGAAACAGAGAC------AGGGAGAGGGAGCCG
GCGACGACGGTGAGGTGGGGGCCCTTGTCGTGGATGGCGCCGGCGCGCGGGACGGAGGACCCGGACGACGGGTGGGAGTA
CGGCCGGCGCGCGCACGGG------CACGGCAGGCCCGAGGATGGCGACGCCGGCGGTAATGACCTGTCGGCCCTCCAGT
CTTTCGTTCTCGTGGCCACTTGCGTTTTCTTCTTCTCCTTCTTCGCCTAACAAGACCTG--CTGTGATAACTGACAACTC
TAATGTACTCCTAACAATAATCCTAAATGGAACAACAGATAAAGAGTTTATTTGCATTCTTGGTTTC-TTTTTTCAACTA
TATAATAGCATGCTTGTTTTAAGTTGTTCGTCTGTTTTTGAATTTTTCTTCCAGCTTTCTACGCGTGGTGGCGCTCTCTG
TTTCTTCTCTAGCCGTCTCCAGCTGGGATGCCAGTCAGTACGCCAAAGACAACCTGAACGTGTTTGCTCAGTTAAGTCAT
CTGATCAATGCCGTGCTTGCAAATCATCAGAAAACTGCCCCTGCAAACACACGCTTACTGACTCAACATTTCGCTGGTTG
TTGTTAATGGTAGGTAAAGCAGGACGGGCCCTGTAAATATTCAGCGAGTTCAACGGCAATGGTGGATGTACTGGAGAAGC
AGAGCACACTGGAAATTAAATAGGAGAATGTAATCGTGCAAACAACGGCCAAAATGTAATCGTCCCACTCAAAATGTAAA
CGATACAGAGTA---TGATTTTCATTTTTTA------------GATTTATCTAGCGGCTGAAGCAATATGCGCAGGTAAT
CTCGAAGCAAAACGTGAAAGCAATCACAAT---------------------------GGCTTAAGGTGATACATTCAATC
GAATCATTCAACATAATAAGTACTATATGGTATGATTTGATTTTACACCAAGGGGCATACAAAAATTGACTGAATCAACT
CACAGTCTTCTATATCGAATTAACCCACTATTTCCGAGAGGGCATCCCACCTAAACCCGACTTGAGCATGGTATCGAAGC
CAGCGTGAAATCCTGCACTGTATGCCATGTTTTTGAACATATTCTGCATTAAAAACATTTGCATTAGACATCTGCCGTCG
CAACATATACATTATGCACCAAATA-------------------------------------------------------
---------------------------------------TCATCAAAACGATCTCCACATGTTTATTTGTTATACTCCCA
CCGTT--CGGAATTACTTGACGCTCAAGCGGATGTATCTAGCACTAAAATACGTCTGGAAACATCCAGTTGAGCGACAAG
TAATTCCGGGACGGAGAAAGTATTATATAGGGGCAAATTAGCATTCTGGATCAGGTTAATCGAAATCTAAACTGCAAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------------------------------S-S-----------------------------------------
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--------------------------S---------------------------------------------S-------
---------------S------------------------------------S---------------------------
------------------S-------------------------------------------------S-S---------
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--------------------------------------------------------------S-----------------
----------------------------------S---------------------------------------------
----------------------------------S--------S------------------SSSSSSSSSSSS------
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-------S------------------S-----------------------------------------------------
--------------------------------------------------------S-----------------------
------------S-----------------------------------S-------------------------------
-------------------------------------------------S---------SSSSSS---------------
------------------------S----------------------------------S--------------------
-------------------SSSSSS-------------------------------------------------------
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-----------------------------------------------------------S-----SSS------------
------------S-----------------------------S---S---------------------------------
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--------------------------S-----------------------------------------------------
------------------------------------------S-----------------S-S-----------------
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----------------------------------------S---------------------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S----------------------S-----
----S---S--------------------S--------------------------------------------------
------------------------------------------------------------------------------
>forward_1029
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-------------------------------------------------CTCCGACGACTTCCCAAGAA-----------
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>reverse_1890
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-------------------------------------------------GAACAGAGACAGGGAGAGGG-----------
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>forward_1031
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---------------------------------------------------CCGACGACTTCCCAAGAACC---------
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>reverse_2621
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------------------------------------------------------------TGCGCCACTCACAATGTAAA
C-------------------------------------------------------------------------------
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