Multiple sequence alignment - TraesCS6D01G309600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G309600 chr6D 100.000 2714 0 0 1 2714 420002948 420005661 0.000000e+00 5012.0
1 TraesCS6D01G309600 chr6B 92.981 1795 77 25 659 2414 632954446 632956230 0.000000e+00 2571.0
2 TraesCS6D01G309600 chr6B 87.547 265 28 2 2451 2714 632956235 632956495 4.390000e-78 302.0
3 TraesCS6D01G309600 chr6B 86.905 168 13 7 129 291 632954021 632954184 2.150000e-41 180.0
4 TraesCS6D01G309600 chr6A 93.033 1507 67 21 607 2089 563025848 563027340 0.000000e+00 2167.0
5 TraesCS6D01G309600 chr6A 94.355 372 18 3 2322 2691 563044407 563044777 3.920000e-158 568.0
6 TraesCS6D01G309600 chr6A 91.613 155 13 0 2088 2242 563027464 563027618 5.890000e-52 215.0
7 TraesCS6D01G309600 chr7D 95.376 173 7 1 288 460 376090485 376090656 9.570000e-70 274.0
8 TraesCS6D01G309600 chr7D 89.109 101 8 1 1554 1654 123146767 123146864 3.670000e-24 122.0
9 TraesCS6D01G309600 chr7D 91.304 69 4 2 2007 2073 123147074 123147142 2.880000e-15 93.5
10 TraesCS6D01G309600 chr4D 95.858 169 7 0 290 458 404108575 404108743 9.570000e-70 274.0
11 TraesCS6D01G309600 chr4D 94.828 174 9 0 291 464 75782219 75782046 3.440000e-69 272.0
12 TraesCS6D01G309600 chr4D 89.444 180 16 3 1111 1289 370530710 370530887 9.780000e-55 224.0
13 TraesCS6D01G309600 chr4D 91.538 130 10 1 2 130 460664 460793 7.720000e-41 178.0
14 TraesCS6D01G309600 chr1D 95.294 170 8 0 290 459 238940383 238940214 1.240000e-68 270.0
15 TraesCS6D01G309600 chr2B 92.553 188 12 2 289 475 157579035 157579221 4.450000e-68 268.0
16 TraesCS6D01G309600 chr5D 92.896 183 11 2 290 470 92111716 92111534 5.760000e-67 265.0
17 TraesCS6D01G309600 chr5D 90.863 197 15 2 272 465 381828935 381828739 7.450000e-66 261.0
18 TraesCS6D01G309600 chr5D 92.366 131 9 1 1 130 45363530 45363400 4.610000e-43 185.0
19 TraesCS6D01G309600 chr5D 92.308 130 9 1 2 130 517855139 517855010 1.660000e-42 183.0
20 TraesCS6D01G309600 chr2A 93.333 180 11 1 290 469 746756987 746757165 5.760000e-67 265.0
21 TraesCS6D01G309600 chr2D 93.296 179 10 2 291 468 580013765 580013942 2.070000e-66 263.0
22 TraesCS6D01G309600 chr4A 86.574 216 24 5 1111 1325 93898293 93898082 1.620000e-57 233.0
23 TraesCS6D01G309600 chr4B 90.341 176 15 2 1111 1285 455615827 455616001 2.100000e-56 230.0
24 TraesCS6D01G309600 chr7A 92.366 131 9 1 2 131 105168228 105168358 4.610000e-43 185.0
25 TraesCS6D01G309600 chr7A 89.855 69 5 2 2007 2073 126034408 126034340 1.340000e-13 87.9
26 TraesCS6D01G309600 chrUn 91.538 130 10 1 2 130 457867429 457867558 7.720000e-41 178.0
27 TraesCS6D01G309600 chrUn 89.855 138 12 2 2 137 22162825 22162688 2.780000e-40 176.0
28 TraesCS6D01G309600 chr1A 91.538 130 10 1 2 130 588138540 588138669 7.720000e-41 178.0
29 TraesCS6D01G309600 chr1A 89.286 140 13 2 2 140 22047847 22047709 9.990000e-40 174.0
30 TraesCS6D01G309600 chr3A 90.840 131 11 1 2 131 151465505 151465635 9.990000e-40 174.0
31 TraesCS6D01G309600 chr7B 92.553 94 4 1 1554 1647 84221105 84221195 6.100000e-27 132.0
32 TraesCS6D01G309600 chr7B 91.304 69 4 2 2007 2073 84221417 84221485 2.880000e-15 93.5
33 TraesCS6D01G309600 chr5A 83.696 92 14 1 2413 2504 600947024 600947114 4.810000e-13 86.1
34 TraesCS6D01G309600 chr3D 95.238 42 2 0 556 597 560115328 560115287 1.740000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G309600 chr6D 420002948 420005661 2713 False 5012.000000 5012 100.000000 1 2714 1 chr6D.!!$F1 2713
1 TraesCS6D01G309600 chr6B 632954021 632956495 2474 False 1017.666667 2571 89.144333 129 2714 3 chr6B.!!$F1 2585
2 TraesCS6D01G309600 chr6A 563025848 563027618 1770 False 1191.000000 2167 92.323000 607 2242 2 chr6A.!!$F2 1635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 961 0.108585 TCAACCTGCACTGGTCTTCC 59.891 55.0 0.0 0.0 39.83 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1857 0.736325 ATTTGACCGGTCGAAGCTCG 60.736 55.0 34.51 0.0 42.1 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.877003 AGAGATTCTACTATGAACCACATACG 58.123 38.462 0.00 0.00 40.07 3.06
27 28 7.720074 AGAGATTCTACTATGAACCACATACGA 59.280 37.037 0.00 0.00 40.07 3.43
28 29 8.234136 AGATTCTACTATGAACCACATACGAA 57.766 34.615 0.00 0.00 40.07 3.85
29 30 8.861086 AGATTCTACTATGAACCACATACGAAT 58.139 33.333 0.00 0.00 40.07 3.34
30 31 8.818141 ATTCTACTATGAACCACATACGAATG 57.182 34.615 0.00 0.00 40.07 2.67
32 33 8.454570 TCTACTATGAACCACATACGAATGTA 57.545 34.615 0.00 0.00 44.70 2.29
33 34 9.074576 TCTACTATGAACCACATACGAATGTAT 57.925 33.333 0.00 0.00 44.70 2.29
44 45 5.984233 ATACGAATGTATGTGATGCGTTT 57.016 34.783 0.00 0.00 39.81 3.60
45 46 4.678509 ACGAATGTATGTGATGCGTTTT 57.321 36.364 0.00 0.00 0.00 2.43
46 47 5.788055 ACGAATGTATGTGATGCGTTTTA 57.212 34.783 0.00 0.00 0.00 1.52
47 48 5.795766 ACGAATGTATGTGATGCGTTTTAG 58.204 37.500 0.00 0.00 0.00 1.85
48 49 5.579119 ACGAATGTATGTGATGCGTTTTAGA 59.421 36.000 0.00 0.00 0.00 2.10
49 50 6.122782 CGAATGTATGTGATGCGTTTTAGAG 58.877 40.000 0.00 0.00 0.00 2.43
50 51 6.237835 CGAATGTATGTGATGCGTTTTAGAGT 60.238 38.462 0.00 0.00 0.00 3.24
51 52 5.778161 TGTATGTGATGCGTTTTAGAGTG 57.222 39.130 0.00 0.00 0.00 3.51
52 53 3.747099 ATGTGATGCGTTTTAGAGTGC 57.253 42.857 0.00 0.00 0.00 4.40
53 54 1.459209 TGTGATGCGTTTTAGAGTGCG 59.541 47.619 0.00 0.00 0.00 5.34
54 55 1.075542 TGATGCGTTTTAGAGTGCGG 58.924 50.000 0.00 0.00 0.00 5.69
55 56 1.337354 TGATGCGTTTTAGAGTGCGGA 60.337 47.619 0.00 0.00 0.00 5.54
56 57 1.933853 GATGCGTTTTAGAGTGCGGAT 59.066 47.619 0.00 0.00 38.05 4.18
57 58 1.803334 TGCGTTTTAGAGTGCGGATT 58.197 45.000 0.00 0.00 0.00 3.01
58 59 1.730064 TGCGTTTTAGAGTGCGGATTC 59.270 47.619 0.00 0.00 0.00 2.52
59 60 1.730064 GCGTTTTAGAGTGCGGATTCA 59.270 47.619 1.67 0.00 0.00 2.57
60 61 2.474032 GCGTTTTAGAGTGCGGATTCAC 60.474 50.000 1.67 0.00 37.24 3.18
68 69 3.837213 AGTGCGGATTCACTCATTTTG 57.163 42.857 0.00 0.00 43.28 2.44
69 70 2.095059 AGTGCGGATTCACTCATTTTGC 60.095 45.455 0.00 0.00 43.28 3.68
70 71 2.095059 GTGCGGATTCACTCATTTTGCT 60.095 45.455 0.00 0.00 34.29 3.91
71 72 2.162208 TGCGGATTCACTCATTTTGCTC 59.838 45.455 0.00 0.00 0.00 4.26
72 73 2.478539 GCGGATTCACTCATTTTGCTCC 60.479 50.000 0.00 0.00 0.00 4.70
73 74 2.223112 CGGATTCACTCATTTTGCTCCG 60.223 50.000 0.00 0.00 38.51 4.63
74 75 2.749621 GGATTCACTCATTTTGCTCCGT 59.250 45.455 0.00 0.00 0.00 4.69
75 76 3.938963 GGATTCACTCATTTTGCTCCGTA 59.061 43.478 0.00 0.00 0.00 4.02
76 77 4.576463 GGATTCACTCATTTTGCTCCGTAT 59.424 41.667 0.00 0.00 0.00 3.06
77 78 5.758296 GGATTCACTCATTTTGCTCCGTATA 59.242 40.000 0.00 0.00 0.00 1.47
78 79 6.428159 GGATTCACTCATTTTGCTCCGTATAT 59.572 38.462 0.00 0.00 0.00 0.86
79 80 6.603237 TTCACTCATTTTGCTCCGTATATG 57.397 37.500 0.00 0.00 0.00 1.78
80 81 5.056480 TCACTCATTTTGCTCCGTATATGG 58.944 41.667 4.41 4.41 0.00 2.74
81 82 4.816385 CACTCATTTTGCTCCGTATATGGT 59.184 41.667 10.85 0.00 0.00 3.55
82 83 5.050091 CACTCATTTTGCTCCGTATATGGTC 60.050 44.000 10.85 5.19 0.00 4.02
83 84 4.385825 TCATTTTGCTCCGTATATGGTCC 58.614 43.478 10.85 4.15 0.00 4.46
84 85 3.916359 TTTTGCTCCGTATATGGTCCA 57.084 42.857 10.85 0.00 0.00 4.02
85 86 4.431416 TTTTGCTCCGTATATGGTCCAT 57.569 40.909 9.88 9.88 0.00 3.41
86 87 5.554437 TTTTGCTCCGTATATGGTCCATA 57.446 39.130 14.08 14.08 0.00 2.74
87 88 4.801330 TTGCTCCGTATATGGTCCATAG 57.199 45.455 16.67 5.34 29.42 2.23
88 89 2.496070 TGCTCCGTATATGGTCCATAGC 59.504 50.000 16.67 14.76 29.42 2.97
89 90 2.479730 GCTCCGTATATGGTCCATAGCG 60.480 54.545 22.08 22.08 32.62 4.26
90 91 3.014623 CTCCGTATATGGTCCATAGCGA 58.985 50.000 26.95 17.29 33.71 4.93
91 92 3.423749 TCCGTATATGGTCCATAGCGAA 58.576 45.455 26.95 13.86 33.71 4.70
92 93 3.827876 TCCGTATATGGTCCATAGCGAAA 59.172 43.478 26.95 17.42 33.71 3.46
93 94 4.464951 TCCGTATATGGTCCATAGCGAAAT 59.535 41.667 26.95 12.03 33.71 2.17
94 95 4.804139 CCGTATATGGTCCATAGCGAAATC 59.196 45.833 26.95 10.29 33.71 2.17
95 96 5.394224 CCGTATATGGTCCATAGCGAAATCT 60.394 44.000 26.95 10.10 33.71 2.40
96 97 5.744345 CGTATATGGTCCATAGCGAAATCTC 59.256 44.000 23.56 4.80 33.71 2.75
97 98 6.404844 CGTATATGGTCCATAGCGAAATCTCT 60.405 42.308 23.56 6.27 33.71 3.10
98 99 7.201705 CGTATATGGTCCATAGCGAAATCTCTA 60.202 40.741 23.56 5.48 33.71 2.43
99 100 7.667575 ATATGGTCCATAGCGAAATCTCTAT 57.332 36.000 16.67 0.00 29.42 1.98
100 101 8.768501 ATATGGTCCATAGCGAAATCTCTATA 57.231 34.615 16.67 0.00 29.42 1.31
101 102 6.911250 TGGTCCATAGCGAAATCTCTATAA 57.089 37.500 0.00 0.00 0.00 0.98
102 103 7.297936 TGGTCCATAGCGAAATCTCTATAAA 57.702 36.000 0.00 0.00 0.00 1.40
103 104 7.378966 TGGTCCATAGCGAAATCTCTATAAAG 58.621 38.462 0.00 0.00 0.00 1.85
104 105 7.232737 TGGTCCATAGCGAAATCTCTATAAAGA 59.767 37.037 0.00 0.00 0.00 2.52
105 106 7.542824 GGTCCATAGCGAAATCTCTATAAAGAC 59.457 40.741 0.00 2.41 0.00 3.01
106 107 8.301002 GTCCATAGCGAAATCTCTATAAAGACT 58.699 37.037 0.00 0.00 0.00 3.24
107 108 8.861086 TCCATAGCGAAATCTCTATAAAGACTT 58.139 33.333 0.00 0.00 0.00 3.01
125 126 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
126 127 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
127 128 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
130 131 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
135 136 1.133419 GGAACGGAGGGAGTAGGATCT 60.133 57.143 0.00 0.00 0.00 2.75
144 145 5.512232 GGAGGGAGTAGGATCTAATTTGCAG 60.512 48.000 0.00 0.00 0.00 4.41
238 239 3.053544 TGTCCTGGGGTGTACAAAAGAAA 60.054 43.478 0.00 0.00 0.00 2.52
243 244 5.128008 CCTGGGGTGTACAAAAGAAAAGAAA 59.872 40.000 0.00 0.00 0.00 2.52
246 247 6.437793 TGGGGTGTACAAAAGAAAAGAAAAGA 59.562 34.615 0.00 0.00 0.00 2.52
247 248 6.978659 GGGGTGTACAAAAGAAAAGAAAAGAG 59.021 38.462 0.00 0.00 0.00 2.85
250 256 9.290483 GGTGTACAAAAGAAAAGAAAAGAGAAG 57.710 33.333 0.00 0.00 0.00 2.85
256 262 9.290483 CAAAAGAAAAGAAAAGAGAAGTACACC 57.710 33.333 0.00 0.00 0.00 4.16
272 278 8.702819 AGAAGTACACCCTATGTTCCTAAATAC 58.297 37.037 0.00 0.00 43.19 1.89
273 279 7.047460 AGTACACCCTATGTTCCTAAATACG 57.953 40.000 0.00 0.00 43.19 3.06
274 280 5.945144 ACACCCTATGTTCCTAAATACGT 57.055 39.130 0.00 0.00 38.98 3.57
275 281 7.779798 AGTACACCCTATGTTCCTAAATACGTA 59.220 37.037 0.00 0.00 43.19 3.57
279 285 9.985730 CACCCTATGTTCCTAAATACGTATAAA 57.014 33.333 8.83 0.00 0.00 1.40
304 332 6.585695 TGTTTGTCTTATACTCTCTCCGTT 57.414 37.500 0.00 0.00 0.00 4.44
307 335 5.113446 TGTCTTATACTCTCTCCGTTCCT 57.887 43.478 0.00 0.00 0.00 3.36
308 336 6.244552 TGTCTTATACTCTCTCCGTTCCTA 57.755 41.667 0.00 0.00 0.00 2.94
317 345 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
319 347 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
322 350 8.488651 TCTCCGTTCCTAAATATTTGTCTTTC 57.511 34.615 11.05 0.00 0.00 2.62
324 352 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
325 353 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
351 379 8.964420 AGATTTCAACAATTGTTTACATACGG 57.036 30.769 21.10 7.77 35.83 4.02
352 380 8.788806 AGATTTCAACAATTGTTTACATACGGA 58.211 29.630 21.10 9.96 35.83 4.69
353 381 8.964420 ATTTCAACAATTGTTTACATACGGAG 57.036 30.769 21.10 6.38 35.83 4.63
354 382 5.933790 TCAACAATTGTTTACATACGGAGC 58.066 37.500 21.10 0.00 35.83 4.70
356 384 5.950758 ACAATTGTTTACATACGGAGCAA 57.049 34.783 4.92 0.00 0.00 3.91
358 386 6.740110 ACAATTGTTTACATACGGAGCAAAA 58.260 32.000 4.92 0.00 0.00 2.44
360 388 7.328249 ACAATTGTTTACATACGGAGCAAAATG 59.672 33.333 4.92 0.00 0.00 2.32
361 389 6.561737 TTGTTTACATACGGAGCAAAATGA 57.438 33.333 0.00 0.00 0.00 2.57
363 391 5.703592 TGTTTACATACGGAGCAAAATGAGT 59.296 36.000 0.00 0.00 0.00 3.41
366 394 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
367 395 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
368 396 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
369 397 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
370 398 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
371 399 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
372 400 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
373 401 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
417 445 8.134202 ACATCCGTATATGATAGTCCATTTGA 57.866 34.615 0.00 0.00 0.00 2.69
418 446 8.593679 ACATCCGTATATGATAGTCCATTTGAA 58.406 33.333 0.00 0.00 0.00 2.69
419 447 9.435688 CATCCGTATATGATAGTCCATTTGAAA 57.564 33.333 0.00 0.00 0.00 2.69
421 449 9.653287 TCCGTATATGATAGTCCATTTGAAATC 57.347 33.333 0.00 0.00 0.00 2.17
422 450 9.658799 CCGTATATGATAGTCCATTTGAAATCT 57.341 33.333 0.00 0.00 0.00 2.40
433 461 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
434 462 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
451 479 9.908152 AAAAAGACAAATATTTAGGAACGAAGG 57.092 29.630 0.00 0.00 0.00 3.46
452 480 7.625828 AAGACAAATATTTAGGAACGAAGGG 57.374 36.000 0.00 0.00 0.00 3.95
453 481 6.954232 AGACAAATATTTAGGAACGAAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
454 482 7.048512 AGACAAATATTTAGGAACGAAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
455 483 6.718294 ACAAATATTTAGGAACGAAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
456 484 7.854337 ACAAATATTTAGGAACGAAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
457 485 8.491958 ACAAATATTTAGGAACGAAGGGAGTAT 58.508 33.333 0.00 0.00 0.00 2.12
458 486 9.338622 CAAATATTTAGGAACGAAGGGAGTATT 57.661 33.333 0.00 0.00 0.00 1.89
459 487 9.916360 AAATATTTAGGAACGAAGGGAGTATTT 57.084 29.630 0.00 0.00 0.00 1.40
462 490 7.722949 TTTAGGAACGAAGGGAGTATTTAGA 57.277 36.000 0.00 0.00 0.00 2.10
463 491 7.722949 TTAGGAACGAAGGGAGTATTTAGAA 57.277 36.000 0.00 0.00 0.00 2.10
464 492 6.616237 AGGAACGAAGGGAGTATTTAGAAA 57.384 37.500 0.00 0.00 0.00 2.52
465 493 6.404708 AGGAACGAAGGGAGTATTTAGAAAC 58.595 40.000 0.00 0.00 0.00 2.78
466 494 6.013984 AGGAACGAAGGGAGTATTTAGAAACA 60.014 38.462 0.00 0.00 0.00 2.83
467 495 6.652062 GGAACGAAGGGAGTATTTAGAAACAA 59.348 38.462 0.00 0.00 0.00 2.83
468 496 7.336176 GGAACGAAGGGAGTATTTAGAAACAAT 59.664 37.037 0.00 0.00 0.00 2.71
469 497 7.611213 ACGAAGGGAGTATTTAGAAACAATG 57.389 36.000 0.00 0.00 0.00 2.82
575 603 7.495135 AAAAATAGTGCCAAAAACCATCTTG 57.505 32.000 0.00 0.00 0.00 3.02
576 604 2.531522 AGTGCCAAAAACCATCTTGC 57.468 45.000 0.00 0.00 0.00 4.01
577 605 1.761784 AGTGCCAAAAACCATCTTGCA 59.238 42.857 0.00 0.00 0.00 4.08
578 606 2.369532 AGTGCCAAAAACCATCTTGCAT 59.630 40.909 0.00 0.00 0.00 3.96
579 607 3.140623 GTGCCAAAAACCATCTTGCATT 58.859 40.909 0.00 0.00 0.00 3.56
580 608 3.565063 GTGCCAAAAACCATCTTGCATTT 59.435 39.130 0.00 0.00 0.00 2.32
581 609 4.036616 GTGCCAAAAACCATCTTGCATTTT 59.963 37.500 0.00 0.00 0.00 1.82
582 610 5.238214 GTGCCAAAAACCATCTTGCATTTTA 59.762 36.000 0.00 0.00 0.00 1.52
583 611 5.824624 TGCCAAAAACCATCTTGCATTTTAA 59.175 32.000 0.00 0.00 0.00 1.52
584 612 6.017275 TGCCAAAAACCATCTTGCATTTTAAG 60.017 34.615 0.00 0.00 0.00 1.85
585 613 6.204495 GCCAAAAACCATCTTGCATTTTAAGA 59.796 34.615 0.00 0.00 38.42 2.10
586 614 7.575365 CCAAAAACCATCTTGCATTTTAAGAC 58.425 34.615 0.00 0.00 37.03 3.01
587 615 7.226325 CCAAAAACCATCTTGCATTTTAAGACA 59.774 33.333 0.00 0.00 37.03 3.41
588 616 7.951530 AAAACCATCTTGCATTTTAAGACAG 57.048 32.000 0.00 0.00 37.03 3.51
589 617 6.899393 AACCATCTTGCATTTTAAGACAGA 57.101 33.333 0.00 0.00 37.03 3.41
590 618 6.506500 ACCATCTTGCATTTTAAGACAGAG 57.493 37.500 0.00 0.00 37.03 3.35
591 619 5.416952 ACCATCTTGCATTTTAAGACAGAGG 59.583 40.000 0.00 0.00 37.03 3.69
592 620 5.163581 CCATCTTGCATTTTAAGACAGAGGG 60.164 44.000 0.00 0.00 37.03 4.30
593 621 5.241403 TCTTGCATTTTAAGACAGAGGGA 57.759 39.130 0.00 0.00 29.68 4.20
594 622 5.248640 TCTTGCATTTTAAGACAGAGGGAG 58.751 41.667 0.00 0.00 29.68 4.30
595 623 4.640771 TGCATTTTAAGACAGAGGGAGT 57.359 40.909 0.00 0.00 0.00 3.85
596 624 5.755409 TGCATTTTAAGACAGAGGGAGTA 57.245 39.130 0.00 0.00 0.00 2.59
597 625 6.313519 TGCATTTTAAGACAGAGGGAGTAT 57.686 37.500 0.00 0.00 0.00 2.12
598 626 6.721318 TGCATTTTAAGACAGAGGGAGTATT 58.279 36.000 0.00 0.00 0.00 1.89
599 627 7.175104 TGCATTTTAAGACAGAGGGAGTATTT 58.825 34.615 0.00 0.00 0.00 1.40
600 628 8.325787 TGCATTTTAAGACAGAGGGAGTATTTA 58.674 33.333 0.00 0.00 0.00 1.40
601 629 8.613482 GCATTTTAAGACAGAGGGAGTATTTAC 58.387 37.037 0.00 0.00 0.00 2.01
602 630 9.667107 CATTTTAAGACAGAGGGAGTATTTACA 57.333 33.333 0.00 0.00 0.00 2.41
606 634 9.710818 TTAAGACAGAGGGAGTATTTACATAGT 57.289 33.333 0.00 0.00 0.00 2.12
607 635 7.589958 AGACAGAGGGAGTATTTACATAGTG 57.410 40.000 0.00 0.00 0.00 2.74
608 636 7.126733 AGACAGAGGGAGTATTTACATAGTGT 58.873 38.462 0.00 0.00 0.00 3.55
609 637 7.285858 AGACAGAGGGAGTATTTACATAGTGTC 59.714 40.741 0.00 0.00 0.00 3.67
614 642 9.099454 GAGGGAGTATTTACATAGTGTCAAAAG 57.901 37.037 0.00 0.00 0.00 2.27
629 657 4.797868 TGTCAAAAGACGTCTTGCATTTTG 59.202 37.500 30.33 26.66 40.50 2.44
635 663 3.496130 AGACGTCTTGCATTTTGAGACAG 59.504 43.478 13.58 9.78 39.74 3.51
641 669 3.726557 TGCATTTTGAGACAGGGAGAT 57.273 42.857 0.00 0.00 0.00 2.75
659 687 8.705594 CAGGGAGATTATTTAGAAACAGAGGTA 58.294 37.037 0.00 0.00 0.00 3.08
701 758 1.643868 GCGTGATGTGGGCGAAATGA 61.644 55.000 0.00 0.00 0.00 2.57
710 770 6.489700 TGATGTGGGCGAAATGATATACAAAT 59.510 34.615 0.00 0.00 0.00 2.32
787 848 4.218635 TGGCCGAGTTTATAAAAATGCACA 59.781 37.500 0.00 0.15 0.00 4.57
791 852 6.033513 GCCGAGTTTATAAAAATGCACACTTC 59.966 38.462 0.00 0.00 0.00 3.01
898 959 1.212935 ACTTCAACCTGCACTGGTCTT 59.787 47.619 0.00 0.00 39.83 3.01
899 960 1.876156 CTTCAACCTGCACTGGTCTTC 59.124 52.381 0.00 0.00 39.83 2.87
900 961 0.108585 TCAACCTGCACTGGTCTTCC 59.891 55.000 0.00 0.00 39.83 3.46
918 988 0.457851 CCCACACTCTCATCGGAGTC 59.542 60.000 0.00 0.00 43.75 3.36
924 994 1.077716 TCTCATCGGAGTCCAGCGA 60.078 57.895 10.49 0.77 42.05 4.93
929 999 4.421479 CGGAGTCCAGCGACGCTT 62.421 66.667 21.97 5.33 44.28 4.68
930 1000 2.507324 GGAGTCCAGCGACGCTTC 60.507 66.667 21.97 15.15 44.28 3.86
931 1001 2.258591 GAGTCCAGCGACGCTTCA 59.741 61.111 21.97 6.49 44.28 3.02
932 1002 2.049063 AGTCCAGCGACGCTTCAC 60.049 61.111 21.97 18.82 44.28 3.18
933 1003 2.355837 GTCCAGCGACGCTTCACA 60.356 61.111 21.97 0.70 36.40 3.58
934 1004 1.738099 GTCCAGCGACGCTTCACAT 60.738 57.895 21.97 0.00 36.40 3.21
935 1005 1.446099 TCCAGCGACGCTTCACATC 60.446 57.895 21.97 0.00 36.40 3.06
936 1006 1.737735 CCAGCGACGCTTCACATCA 60.738 57.895 21.97 0.00 36.40 3.07
943 1013 3.809234 CGACGCTTCACATCAATCAAAA 58.191 40.909 0.00 0.00 0.00 2.44
944 1014 3.842428 CGACGCTTCACATCAATCAAAAG 59.158 43.478 0.00 0.00 0.00 2.27
951 1021 7.115236 CGCTTCACATCAATCAAAAGAATCAAA 59.885 33.333 0.00 0.00 0.00 2.69
960 1030 7.748683 TCAATCAAAAGAATCAAATTCGTACCG 59.251 33.333 0.00 0.00 43.92 4.02
968 1038 0.389426 AAATTCGTACCGCAGCGAGT 60.389 50.000 18.75 15.02 38.40 4.18
993 1063 2.161486 GTCAGTGAGCGTGATCGGC 61.161 63.158 0.00 0.55 37.56 5.54
1469 1545 4.799473 CGCGTCGTCGTTCGGCTA 62.799 66.667 0.00 0.00 42.47 3.93
1638 1714 1.963338 GTGCAGCACCTTCTTCGCT 60.963 57.895 15.27 0.00 36.10 4.93
1722 1798 1.671328 TCCTACAACTGATCGAGCTCG 59.329 52.381 30.03 30.03 41.45 5.03
1745 1846 4.504916 CAGCTCCGGCCACGAGAG 62.505 72.222 18.81 11.88 44.60 3.20
1748 1849 3.764466 CTCCGGCCACGAGAGCTT 61.764 66.667 10.73 0.00 44.60 3.74
1749 1850 3.708220 CTCCGGCCACGAGAGCTTC 62.708 68.421 10.73 0.00 44.60 3.86
2132 2366 2.988493 GTGTGCAAGCAATGTGTTATGG 59.012 45.455 0.00 0.00 0.00 2.74
2145 2379 6.618287 ATGTGTTATGGTGATGAATTACCG 57.382 37.500 0.36 0.00 39.14 4.02
2175 2409 6.870971 TTTTGCTTCGTTTTAGGTGAGTAT 57.129 33.333 0.00 0.00 0.00 2.12
2192 2426 8.478877 AGGTGAGTATTCTACATGTTCTAAAGG 58.521 37.037 2.30 0.00 0.00 3.11
2217 2451 5.061721 ACTTTTTGGTTAGGAGACATGGT 57.938 39.130 0.00 0.00 0.00 3.55
2219 2453 6.607019 ACTTTTTGGTTAGGAGACATGGTAA 58.393 36.000 0.00 0.00 0.00 2.85
2227 2461 4.457834 AGGAGACATGGTAAAAGAGTCG 57.542 45.455 0.00 0.00 34.56 4.18
2228 2462 3.195825 AGGAGACATGGTAAAAGAGTCGG 59.804 47.826 0.00 0.00 34.56 4.79
2233 2467 5.875359 AGACATGGTAAAAGAGTCGGATTTC 59.125 40.000 0.00 0.00 34.56 2.17
2246 2480 6.492087 AGAGTCGGATTTCCTATTAGAAGAGG 59.508 42.308 0.00 0.00 38.76 3.69
2257 2491 7.076446 TCCTATTAGAAGAGGGTGAAATAGCT 58.924 38.462 3.19 0.00 37.97 3.32
2258 2492 8.232412 TCCTATTAGAAGAGGGTGAAATAGCTA 58.768 37.037 0.00 0.00 37.97 3.32
2285 2519 8.848474 TCCAAAGTAGAGTTATTTTCAAGAGG 57.152 34.615 0.00 0.00 0.00 3.69
2287 2521 9.284968 CCAAAGTAGAGTTATTTTCAAGAGGAA 57.715 33.333 0.00 0.00 0.00 3.36
2307 2541 6.980577 AGGAATAACATCATAAGAAACCCCA 58.019 36.000 0.00 0.00 0.00 4.96
2370 2604 1.654023 GGCGGTTGGCTAATGTCACC 61.654 60.000 0.00 0.00 42.94 4.02
2371 2605 0.676782 GCGGTTGGCTAATGTCACCT 60.677 55.000 0.00 0.00 39.11 4.00
2381 2615 5.186198 GGCTAATGTCACCTATCACTTGTT 58.814 41.667 0.00 0.00 0.00 2.83
2391 2625 4.202419 ACCTATCACTTGTTGTGCCACTTA 60.202 41.667 0.00 0.00 45.81 2.24
2397 2631 4.024893 CACTTGTTGTGCCACTTACTAGTG 60.025 45.833 20.53 20.53 43.12 2.74
2398 2632 6.196126 CACTTGTTGTGCCACTTACTAGTGA 61.196 44.000 25.08 0.00 45.58 3.41
2441 2675 9.838975 AATTTCAGAAACAAAACAATTCCAAAC 57.161 25.926 0.00 0.00 0.00 2.93
2442 2676 6.639671 TCAGAAACAAAACAATTCCAAACG 57.360 33.333 0.00 0.00 0.00 3.60
2443 2677 6.159988 TCAGAAACAAAACAATTCCAAACGT 58.840 32.000 0.00 0.00 0.00 3.99
2444 2678 6.309251 TCAGAAACAAAACAATTCCAAACGTC 59.691 34.615 0.00 0.00 0.00 4.34
2445 2679 6.090088 CAGAAACAAAACAATTCCAAACGTCA 59.910 34.615 0.00 0.00 0.00 4.35
2446 2680 5.771602 AACAAAACAATTCCAAACGTCAC 57.228 34.783 0.00 0.00 0.00 3.67
2447 2681 5.066968 ACAAAACAATTCCAAACGTCACT 57.933 34.783 0.00 0.00 0.00 3.41
2448 2682 4.862018 ACAAAACAATTCCAAACGTCACTG 59.138 37.500 0.00 0.00 0.00 3.66
2449 2683 3.708563 AACAATTCCAAACGTCACTGG 57.291 42.857 5.19 5.19 0.00 4.00
2465 2699 5.447144 CGTCACTGGAATATGCGAAATTTCA 60.447 40.000 17.99 0.43 0.00 2.69
2562 2797 6.223852 TGGTAGTCTGAATCTGACTCAAAAC 58.776 40.000 22.95 16.09 40.76 2.43
2593 2828 6.570957 CGTTACAAGTACATTGGACCTCACTA 60.571 42.308 0.00 0.00 43.68 2.74
2594 2829 5.818678 ACAAGTACATTGGACCTCACTAA 57.181 39.130 0.00 0.00 43.68 2.24
2658 2893 3.719173 TTTTAACCGTGCTTTTCCCTG 57.281 42.857 0.00 0.00 0.00 4.45
2677 2912 2.233676 CTGCGTATATAGGATGCACCCA 59.766 50.000 0.00 0.00 40.05 4.51
2684 2919 2.787473 TAGGATGCACCCACTTCTTG 57.213 50.000 0.00 0.00 40.05 3.02
2687 2922 0.610232 GATGCACCCACTTCTTGGCT 60.610 55.000 0.00 0.00 45.37 4.75
2693 2928 0.825010 CCCACTTCTTGGCTGCTTGT 60.825 55.000 0.00 0.00 45.37 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.353684 CGTATGTGGTTCATAGTAGAATCTCTT 58.646 37.037 0.00 0.00 39.36 2.85
1 2 7.720074 TCGTATGTGGTTCATAGTAGAATCTCT 59.280 37.037 0.00 0.00 39.36 3.10
2 3 7.872881 TCGTATGTGGTTCATAGTAGAATCTC 58.127 38.462 0.00 0.00 39.36 2.75
3 4 7.818997 TCGTATGTGGTTCATAGTAGAATCT 57.181 36.000 0.00 0.00 39.36 2.40
4 5 8.916654 CATTCGTATGTGGTTCATAGTAGAATC 58.083 37.037 0.00 0.00 39.36 2.52
5 6 8.421784 ACATTCGTATGTGGTTCATAGTAGAAT 58.578 33.333 6.89 0.00 43.29 2.40
6 7 7.778083 ACATTCGTATGTGGTTCATAGTAGAA 58.222 34.615 6.89 0.00 43.29 2.10
7 8 7.342769 ACATTCGTATGTGGTTCATAGTAGA 57.657 36.000 6.89 0.00 43.29 2.59
8 9 9.129209 CATACATTCGTATGTGGTTCATAGTAG 57.871 37.037 16.91 0.00 46.70 2.57
10 11 7.946655 CATACATTCGTATGTGGTTCATAGT 57.053 36.000 16.91 0.00 46.70 2.12
22 23 5.984233 AAACGCATCACATACATTCGTAT 57.016 34.783 0.00 0.00 38.96 3.06
23 24 5.788055 AAAACGCATCACATACATTCGTA 57.212 34.783 0.00 0.00 0.00 3.43
24 25 4.678509 AAAACGCATCACATACATTCGT 57.321 36.364 0.00 0.00 0.00 3.85
25 26 6.031549 TCTAAAACGCATCACATACATTCG 57.968 37.500 0.00 0.00 0.00 3.34
26 27 6.901887 CACTCTAAAACGCATCACATACATTC 59.098 38.462 0.00 0.00 0.00 2.67
27 28 6.675486 GCACTCTAAAACGCATCACATACATT 60.675 38.462 0.00 0.00 0.00 2.71
28 29 5.220662 GCACTCTAAAACGCATCACATACAT 60.221 40.000 0.00 0.00 0.00 2.29
29 30 4.092821 GCACTCTAAAACGCATCACATACA 59.907 41.667 0.00 0.00 0.00 2.29
30 31 4.578601 GCACTCTAAAACGCATCACATAC 58.421 43.478 0.00 0.00 0.00 2.39
31 32 3.305897 CGCACTCTAAAACGCATCACATA 59.694 43.478 0.00 0.00 0.00 2.29
32 33 2.094258 CGCACTCTAAAACGCATCACAT 59.906 45.455 0.00 0.00 0.00 3.21
33 34 1.459209 CGCACTCTAAAACGCATCACA 59.541 47.619 0.00 0.00 0.00 3.58
34 35 1.201921 CCGCACTCTAAAACGCATCAC 60.202 52.381 0.00 0.00 0.00 3.06
35 36 1.075542 CCGCACTCTAAAACGCATCA 58.924 50.000 0.00 0.00 0.00 3.07
36 37 1.355971 TCCGCACTCTAAAACGCATC 58.644 50.000 0.00 0.00 0.00 3.91
37 38 2.024176 ATCCGCACTCTAAAACGCAT 57.976 45.000 0.00 0.00 0.00 4.73
38 39 1.730064 GAATCCGCACTCTAAAACGCA 59.270 47.619 0.00 0.00 0.00 5.24
39 40 1.730064 TGAATCCGCACTCTAAAACGC 59.270 47.619 0.00 0.00 0.00 4.84
40 41 2.993899 AGTGAATCCGCACTCTAAAACG 59.006 45.455 0.00 0.00 45.54 3.60
49 50 2.095059 AGCAAAATGAGTGAATCCGCAC 60.095 45.455 0.00 0.00 39.05 5.34
50 51 2.161855 AGCAAAATGAGTGAATCCGCA 58.838 42.857 0.00 0.00 0.00 5.69
51 52 2.478539 GGAGCAAAATGAGTGAATCCGC 60.479 50.000 0.00 0.00 0.00 5.54
52 53 2.223112 CGGAGCAAAATGAGTGAATCCG 60.223 50.000 0.00 0.00 39.17 4.18
53 54 2.749621 ACGGAGCAAAATGAGTGAATCC 59.250 45.455 0.00 0.00 0.00 3.01
54 55 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
55 56 6.205464 CCATATACGGAGCAAAATGAGTGAAT 59.795 38.462 0.00 0.00 0.00 2.57
56 57 5.527214 CCATATACGGAGCAAAATGAGTGAA 59.473 40.000 0.00 0.00 0.00 3.18
57 58 5.056480 CCATATACGGAGCAAAATGAGTGA 58.944 41.667 0.00 0.00 0.00 3.41
58 59 4.816385 ACCATATACGGAGCAAAATGAGTG 59.184 41.667 0.00 0.00 0.00 3.51
59 60 5.036117 ACCATATACGGAGCAAAATGAGT 57.964 39.130 0.00 0.00 0.00 3.41
60 61 4.452455 GGACCATATACGGAGCAAAATGAG 59.548 45.833 0.00 0.00 0.00 2.90
61 62 4.141597 TGGACCATATACGGAGCAAAATGA 60.142 41.667 0.00 0.00 0.00 2.57
62 63 4.133820 TGGACCATATACGGAGCAAAATG 58.866 43.478 0.00 0.00 0.00 2.32
63 64 4.431416 TGGACCATATACGGAGCAAAAT 57.569 40.909 0.00 0.00 0.00 1.82
64 65 3.916359 TGGACCATATACGGAGCAAAA 57.084 42.857 0.00 0.00 0.00 2.44
65 66 4.562757 GCTATGGACCATATACGGAGCAAA 60.563 45.833 14.69 0.00 0.00 3.68
66 67 3.056107 GCTATGGACCATATACGGAGCAA 60.056 47.826 14.69 0.00 0.00 3.91
67 68 2.496070 GCTATGGACCATATACGGAGCA 59.504 50.000 14.69 0.00 0.00 4.26
68 69 2.479730 CGCTATGGACCATATACGGAGC 60.480 54.545 21.20 17.36 0.00 4.70
69 70 3.014623 TCGCTATGGACCATATACGGAG 58.985 50.000 25.30 13.66 31.38 4.63
70 71 3.076079 TCGCTATGGACCATATACGGA 57.924 47.619 25.30 14.42 31.38 4.69
71 72 3.861276 TTCGCTATGGACCATATACGG 57.139 47.619 25.30 13.10 31.38 4.02
72 73 5.651530 AGATTTCGCTATGGACCATATACG 58.348 41.667 22.24 22.24 31.56 3.06
73 74 6.868622 AGAGATTTCGCTATGGACCATATAC 58.131 40.000 14.69 9.22 0.00 1.47
74 75 8.768501 ATAGAGATTTCGCTATGGACCATATA 57.231 34.615 14.69 1.15 37.53 0.86
75 76 7.667575 ATAGAGATTTCGCTATGGACCATAT 57.332 36.000 14.69 0.00 37.53 1.78
76 77 8.589701 TTATAGAGATTTCGCTATGGACCATA 57.410 34.615 13.65 13.65 38.95 2.74
77 78 7.482169 TTATAGAGATTTCGCTATGGACCAT 57.518 36.000 12.67 12.67 38.95 3.55
78 79 6.911250 TTATAGAGATTTCGCTATGGACCA 57.089 37.500 12.39 0.00 38.95 4.02
79 80 7.542824 GTCTTTATAGAGATTTCGCTATGGACC 59.457 40.741 12.39 0.00 38.95 4.46
80 81 8.301002 AGTCTTTATAGAGATTTCGCTATGGAC 58.699 37.037 12.39 14.72 38.95 4.02
81 82 8.410673 AGTCTTTATAGAGATTTCGCTATGGA 57.589 34.615 12.39 6.69 38.95 3.41
99 100 8.645110 CCCTCCGTTCCTAAATATAAGTCTTTA 58.355 37.037 0.00 0.00 0.00 1.85
100 101 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
101 102 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
102 103 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
103 104 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
104 105 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
105 106 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
106 107 6.723052 CCTACTCCCTCCGTTCCTAAATATAA 59.277 42.308 0.00 0.00 0.00 0.98
107 108 6.045931 TCCTACTCCCTCCGTTCCTAAATATA 59.954 42.308 0.00 0.00 0.00 0.86
108 109 5.085219 CCTACTCCCTCCGTTCCTAAATAT 58.915 45.833 0.00 0.00 0.00 1.28
109 110 4.168675 TCCTACTCCCTCCGTTCCTAAATA 59.831 45.833 0.00 0.00 0.00 1.40
110 111 3.052338 TCCTACTCCCTCCGTTCCTAAAT 60.052 47.826 0.00 0.00 0.00 1.40
111 112 2.312741 TCCTACTCCCTCCGTTCCTAAA 59.687 50.000 0.00 0.00 0.00 1.85
112 113 1.925255 TCCTACTCCCTCCGTTCCTAA 59.075 52.381 0.00 0.00 0.00 2.69
113 114 1.600058 TCCTACTCCCTCCGTTCCTA 58.400 55.000 0.00 0.00 0.00 2.94
114 115 0.935194 ATCCTACTCCCTCCGTTCCT 59.065 55.000 0.00 0.00 0.00 3.36
115 116 1.133419 AGATCCTACTCCCTCCGTTCC 60.133 57.143 0.00 0.00 0.00 3.62
116 117 2.368311 AGATCCTACTCCCTCCGTTC 57.632 55.000 0.00 0.00 0.00 3.95
117 118 3.967467 TTAGATCCTACTCCCTCCGTT 57.033 47.619 0.00 0.00 0.00 4.44
118 119 4.472690 AATTAGATCCTACTCCCTCCGT 57.527 45.455 0.00 0.00 0.00 4.69
119 120 4.561734 GCAAATTAGATCCTACTCCCTCCG 60.562 50.000 0.00 0.00 0.00 4.63
120 121 4.348168 TGCAAATTAGATCCTACTCCCTCC 59.652 45.833 0.00 0.00 0.00 4.30
121 122 5.512232 CCTGCAAATTAGATCCTACTCCCTC 60.512 48.000 0.00 0.00 0.00 4.30
122 123 4.349342 CCTGCAAATTAGATCCTACTCCCT 59.651 45.833 0.00 0.00 0.00 4.20
123 124 4.348168 TCCTGCAAATTAGATCCTACTCCC 59.652 45.833 0.00 0.00 0.00 4.30
124 125 5.552870 TCCTGCAAATTAGATCCTACTCC 57.447 43.478 0.00 0.00 0.00 3.85
125 126 7.003402 AGATCCTGCAAATTAGATCCTACTC 57.997 40.000 0.00 0.00 36.59 2.59
126 127 7.385894 AAGATCCTGCAAATTAGATCCTACT 57.614 36.000 0.00 0.00 36.59 2.57
127 128 7.174080 GGAAAGATCCTGCAAATTAGATCCTAC 59.826 40.741 0.00 0.00 42.93 3.18
130 131 5.829924 TGGAAAGATCCTGCAAATTAGATCC 59.170 40.000 0.00 0.00 46.70 3.36
144 145 9.521503 GCTTAACTGAAAATAATGGAAAGATCC 57.478 33.333 0.00 0.00 46.76 3.36
161 162 5.865085 ACACTAAGGAACATGCTTAACTGA 58.135 37.500 0.00 0.00 29.91 3.41
219 220 4.211920 TCTTTTCTTTTGTACACCCCAGG 58.788 43.478 0.00 0.00 0.00 4.45
221 222 6.437793 TCTTTTCTTTTCTTTTGTACACCCCA 59.562 34.615 0.00 0.00 0.00 4.96
223 224 7.768240 TCTCTTTTCTTTTCTTTTGTACACCC 58.232 34.615 0.00 0.00 0.00 4.61
238 239 7.317722 ACATAGGGTGTACTTCTCTTTTCTT 57.682 36.000 0.00 0.00 39.91 2.52
243 244 5.342866 AGGAACATAGGGTGTACTTCTCTT 58.657 41.667 0.00 0.00 41.14 2.85
246 247 7.750947 ATTTAGGAACATAGGGTGTACTTCT 57.249 36.000 0.00 0.00 41.14 2.85
247 248 7.650903 CGTATTTAGGAACATAGGGTGTACTTC 59.349 40.741 0.00 0.00 41.14 3.01
250 256 6.809869 ACGTATTTAGGAACATAGGGTGTAC 58.190 40.000 0.00 0.00 41.14 2.90
279 285 7.171630 ACGGAGAGAGTATAAGACAAACATT 57.828 36.000 0.00 0.00 0.00 2.71
291 297 8.925338 ACAAATATTTAGGAACGGAGAGAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
294 300 7.493367 AGACAAATATTTAGGAACGGAGAGAG 58.507 38.462 0.00 0.00 0.00 3.20
296 302 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
325 353 9.405587 CCGTATGTAAACAATTGTTGAAATCTT 57.594 29.630 23.93 9.37 38.44 2.40
326 354 8.788806 TCCGTATGTAAACAATTGTTGAAATCT 58.211 29.630 23.93 10.07 38.44 2.40
327 355 8.958175 TCCGTATGTAAACAATTGTTGAAATC 57.042 30.769 23.93 12.75 38.44 2.17
328 356 7.540745 GCTCCGTATGTAAACAATTGTTGAAAT 59.459 33.333 23.93 18.90 38.44 2.17
329 357 6.858993 GCTCCGTATGTAAACAATTGTTGAAA 59.141 34.615 23.93 12.83 38.44 2.69
330 358 6.017026 TGCTCCGTATGTAAACAATTGTTGAA 60.017 34.615 23.93 12.84 38.44 2.69
332 360 5.694816 TGCTCCGTATGTAAACAATTGTTG 58.305 37.500 23.93 9.71 38.44 3.33
333 361 5.950758 TGCTCCGTATGTAAACAATTGTT 57.049 34.783 18.13 18.13 40.50 2.83
334 362 5.950758 TTGCTCCGTATGTAAACAATTGT 57.049 34.783 4.92 4.92 0.00 2.71
335 363 7.540400 TCATTTTGCTCCGTATGTAAACAATTG 59.460 33.333 3.24 3.24 0.00 2.32
336 364 7.598278 TCATTTTGCTCCGTATGTAAACAATT 58.402 30.769 0.00 0.00 0.00 2.32
338 366 6.205853 ACTCATTTTGCTCCGTATGTAAACAA 59.794 34.615 0.00 0.00 0.00 2.83
342 370 5.483811 TCACTCATTTTGCTCCGTATGTAA 58.516 37.500 0.00 0.00 0.00 2.41
343 371 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
345 373 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
347 375 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
350 378 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
351 379 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
391 419 9.250246 TCAAATGGACTATCATATACGGATGTA 57.750 33.333 0.00 0.00 34.45 2.29
392 420 8.134202 TCAAATGGACTATCATATACGGATGT 57.866 34.615 0.00 0.00 0.00 3.06
393 421 9.435688 TTTCAAATGGACTATCATATACGGATG 57.564 33.333 0.00 0.00 0.00 3.51
395 423 9.653287 GATTTCAAATGGACTATCATATACGGA 57.347 33.333 0.00 0.00 0.00 4.69
396 424 9.658799 AGATTTCAAATGGACTATCATATACGG 57.341 33.333 0.00 0.00 0.00 4.02
407 435 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
408 436 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
425 453 9.908152 CCTTCGTTCCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
426 454 8.520351 CCCTTCGTTCCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
427 455 7.886446 TCCCTTCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
428 456 7.399634 TCCCTTCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
429 457 6.954232 TCCCTTCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
430 458 6.822170 ACTCCCTTCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
431 459 6.718294 ACTCCCTTCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
432 460 8.904099 ATACTCCCTTCGTTCCTAAATATTTG 57.096 34.615 11.05 1.40 0.00 2.32
433 461 9.916360 AAATACTCCCTTCGTTCCTAAATATTT 57.084 29.630 5.89 5.89 0.00 1.40
436 464 9.425248 TCTAAATACTCCCTTCGTTCCTAAATA 57.575 33.333 0.00 0.00 0.00 1.40
437 465 8.315220 TCTAAATACTCCCTTCGTTCCTAAAT 57.685 34.615 0.00 0.00 0.00 1.40
438 466 7.722949 TCTAAATACTCCCTTCGTTCCTAAA 57.277 36.000 0.00 0.00 0.00 1.85
439 467 7.722949 TTCTAAATACTCCCTTCGTTCCTAA 57.277 36.000 0.00 0.00 0.00 2.69
440 468 7.178983 TGTTTCTAAATACTCCCTTCGTTCCTA 59.821 37.037 0.00 0.00 0.00 2.94
441 469 6.013984 TGTTTCTAAATACTCCCTTCGTTCCT 60.014 38.462 0.00 0.00 0.00 3.36
442 470 6.168389 TGTTTCTAAATACTCCCTTCGTTCC 58.832 40.000 0.00 0.00 0.00 3.62
443 471 7.662604 TTGTTTCTAAATACTCCCTTCGTTC 57.337 36.000 0.00 0.00 0.00 3.95
444 472 7.120726 CCATTGTTTCTAAATACTCCCTTCGTT 59.879 37.037 0.00 0.00 0.00 3.85
445 473 6.598064 CCATTGTTTCTAAATACTCCCTTCGT 59.402 38.462 0.00 0.00 0.00 3.85
446 474 6.598064 ACCATTGTTTCTAAATACTCCCTTCG 59.402 38.462 0.00 0.00 0.00 3.79
447 475 7.939784 ACCATTGTTTCTAAATACTCCCTTC 57.060 36.000 0.00 0.00 0.00 3.46
448 476 8.612145 AGTACCATTGTTTCTAAATACTCCCTT 58.388 33.333 0.00 0.00 0.00 3.95
449 477 8.159229 AGTACCATTGTTTCTAAATACTCCCT 57.841 34.615 0.00 0.00 0.00 4.20
450 478 8.803397 AAGTACCATTGTTTCTAAATACTCCC 57.197 34.615 0.00 0.00 0.00 4.30
551 579 6.017192 GCAAGATGGTTTTTGGCACTATTTTT 60.017 34.615 0.00 0.00 0.00 1.94
552 580 5.469760 GCAAGATGGTTTTTGGCACTATTTT 59.530 36.000 0.00 0.00 0.00 1.82
553 581 4.996758 GCAAGATGGTTTTTGGCACTATTT 59.003 37.500 0.00 0.00 0.00 1.40
554 582 4.040217 TGCAAGATGGTTTTTGGCACTATT 59.960 37.500 0.00 0.00 0.00 1.73
555 583 3.577848 TGCAAGATGGTTTTTGGCACTAT 59.422 39.130 0.00 0.00 0.00 2.12
556 584 2.961741 TGCAAGATGGTTTTTGGCACTA 59.038 40.909 0.00 0.00 0.00 2.74
557 585 1.761784 TGCAAGATGGTTTTTGGCACT 59.238 42.857 0.00 0.00 0.00 4.40
558 586 2.237393 TGCAAGATGGTTTTTGGCAC 57.763 45.000 0.00 0.00 0.00 5.01
559 587 3.488778 AATGCAAGATGGTTTTTGGCA 57.511 38.095 0.00 0.00 0.00 4.92
560 588 4.834357 AAAATGCAAGATGGTTTTTGGC 57.166 36.364 0.00 0.00 0.00 4.52
561 589 7.226325 TGTCTTAAAATGCAAGATGGTTTTTGG 59.774 33.333 0.00 0.00 34.67 3.28
562 590 8.140677 TGTCTTAAAATGCAAGATGGTTTTTG 57.859 30.769 0.00 0.00 34.67 2.44
563 591 8.203485 TCTGTCTTAAAATGCAAGATGGTTTTT 58.797 29.630 0.00 0.00 34.67 1.94
564 592 7.725251 TCTGTCTTAAAATGCAAGATGGTTTT 58.275 30.769 0.00 0.00 34.67 2.43
565 593 7.288810 TCTGTCTTAAAATGCAAGATGGTTT 57.711 32.000 0.00 0.00 34.67 3.27
566 594 6.071728 CCTCTGTCTTAAAATGCAAGATGGTT 60.072 38.462 0.00 0.00 34.67 3.67
567 595 5.416952 CCTCTGTCTTAAAATGCAAGATGGT 59.583 40.000 0.00 0.00 34.67 3.55
568 596 5.163581 CCCTCTGTCTTAAAATGCAAGATGG 60.164 44.000 0.00 0.00 34.67 3.51
569 597 5.649395 TCCCTCTGTCTTAAAATGCAAGATG 59.351 40.000 0.00 0.00 34.67 2.90
570 598 5.819991 TCCCTCTGTCTTAAAATGCAAGAT 58.180 37.500 0.00 0.00 34.67 2.40
571 599 5.221925 ACTCCCTCTGTCTTAAAATGCAAGA 60.222 40.000 0.00 0.00 0.00 3.02
572 600 5.006386 ACTCCCTCTGTCTTAAAATGCAAG 58.994 41.667 0.00 0.00 0.00 4.01
573 601 4.985538 ACTCCCTCTGTCTTAAAATGCAA 58.014 39.130 0.00 0.00 0.00 4.08
574 602 4.640771 ACTCCCTCTGTCTTAAAATGCA 57.359 40.909 0.00 0.00 0.00 3.96
575 603 7.631717 AAATACTCCCTCTGTCTTAAAATGC 57.368 36.000 0.00 0.00 0.00 3.56
576 604 9.667107 TGTAAATACTCCCTCTGTCTTAAAATG 57.333 33.333 0.00 0.00 0.00 2.32
580 608 9.710818 ACTATGTAAATACTCCCTCTGTCTTAA 57.289 33.333 0.00 0.00 0.00 1.85
581 609 9.132923 CACTATGTAAATACTCCCTCTGTCTTA 57.867 37.037 0.00 0.00 0.00 2.10
582 610 7.620094 ACACTATGTAAATACTCCCTCTGTCTT 59.380 37.037 0.00 0.00 0.00 3.01
583 611 7.126733 ACACTATGTAAATACTCCCTCTGTCT 58.873 38.462 0.00 0.00 0.00 3.41
584 612 7.068348 TGACACTATGTAAATACTCCCTCTGTC 59.932 40.741 0.00 0.00 0.00 3.51
585 613 6.895756 TGACACTATGTAAATACTCCCTCTGT 59.104 38.462 0.00 0.00 0.00 3.41
586 614 7.348080 TGACACTATGTAAATACTCCCTCTG 57.652 40.000 0.00 0.00 0.00 3.35
587 615 7.973048 TTGACACTATGTAAATACTCCCTCT 57.027 36.000 0.00 0.00 0.00 3.69
588 616 9.099454 CTTTTGACACTATGTAAATACTCCCTC 57.901 37.037 0.00 0.00 0.00 4.30
589 617 8.822805 TCTTTTGACACTATGTAAATACTCCCT 58.177 33.333 0.00 0.00 0.00 4.20
607 635 5.034152 TCAAAATGCAAGACGTCTTTTGAC 58.966 37.500 26.80 18.61 45.55 3.18
608 636 5.065859 TCTCAAAATGCAAGACGTCTTTTGA 59.934 36.000 27.82 27.82 41.16 2.69
609 637 5.172053 GTCTCAAAATGCAAGACGTCTTTTG 59.828 40.000 27.79 25.59 37.87 2.44
614 642 3.364366 CCTGTCTCAAAATGCAAGACGTC 60.364 47.826 7.70 7.70 41.84 4.34
629 657 8.478877 TCTGTTTCTAAATAATCTCCCTGTCTC 58.521 37.037 0.00 0.00 0.00 3.36
659 687 7.393796 ACGCTGATACAAGCCTATTAGTACTAT 59.606 37.037 2.79 0.00 40.23 2.12
664 692 4.341235 TCACGCTGATACAAGCCTATTAGT 59.659 41.667 0.00 0.00 40.23 2.24
671 728 1.328680 CACATCACGCTGATACAAGCC 59.671 52.381 1.07 0.00 40.23 4.35
710 770 4.760715 GGTTGTGTGTCTCTCTAGTCTGTA 59.239 45.833 0.00 0.00 0.00 2.74
787 848 0.250513 GGAACCAGGAGCATCGAAGT 59.749 55.000 0.00 0.00 34.37 3.01
791 852 4.336889 TTTATAGGAACCAGGAGCATCG 57.663 45.455 0.00 0.00 34.37 3.84
898 959 0.039764 ACTCCGATGAGAGTGTGGGA 59.960 55.000 0.00 0.00 45.41 4.37
899 960 2.584673 ACTCCGATGAGAGTGTGGG 58.415 57.895 0.00 0.00 45.41 4.61
918 988 1.291184 TTGATGTGAAGCGTCGCTGG 61.291 55.000 22.50 0.00 39.62 4.85
924 994 5.437289 TTCTTTTGATTGATGTGAAGCGT 57.563 34.783 0.00 0.00 0.00 5.07
929 999 9.131416 CGAATTTGATTCTTTTGATTGATGTGA 57.869 29.630 0.00 0.00 37.13 3.58
930 1000 8.918658 ACGAATTTGATTCTTTTGATTGATGTG 58.081 29.630 0.00 0.00 37.13 3.21
933 1003 9.573133 GGTACGAATTTGATTCTTTTGATTGAT 57.427 29.630 0.00 0.00 37.13 2.57
934 1004 8.964420 GGTACGAATTTGATTCTTTTGATTGA 57.036 30.769 0.00 0.00 37.13 2.57
951 1021 3.840346 GCTACTCGCTGCGGTACGAAT 62.840 57.143 23.03 0.00 40.77 3.34
960 1030 2.945066 GACGACGCTACTCGCTGC 60.945 66.667 0.00 0.00 43.23 5.25
968 1038 2.322830 ACGCTCACTGACGACGCTA 61.323 57.895 0.00 0.00 0.00 4.26
978 1048 4.498520 CGGCCGATCACGCTCACT 62.499 66.667 24.07 0.00 38.29 3.41
993 1063 1.369091 CGCTCTTCACCATTTCCCGG 61.369 60.000 0.00 0.00 0.00 5.73
1045 1115 4.444024 CACCGCATTGCCGACGTG 62.444 66.667 2.41 1.14 0.00 4.49
1461 1537 2.757099 TCCTCCGGGTAGCCGAAC 60.757 66.667 33.83 0.00 34.88 3.95
1756 1857 0.736325 ATTTGACCGGTCGAAGCTCG 60.736 55.000 34.51 0.00 42.10 5.03
1757 1858 1.000145 GATTTGACCGGTCGAAGCTC 59.000 55.000 35.20 26.70 36.67 4.09
1991 2098 2.563702 CCACAAATGCATAATTGGCCC 58.436 47.619 14.12 0.00 0.00 5.80
2125 2359 4.776349 AGCGGTAATTCATCACCATAACA 58.224 39.130 0.00 0.00 34.25 2.41
2132 2366 7.275560 AGCAAAATTAAAGCGGTAATTCATCAC 59.724 33.333 7.77 0.03 33.50 3.06
2145 2379 7.168469 TCACCTAAAACGAAGCAAAATTAAAGC 59.832 33.333 0.00 0.00 0.00 3.51
2175 2409 7.817418 AAAGTTGCCTTTAGAACATGTAGAA 57.183 32.000 0.00 0.00 39.13 2.10
2192 2426 4.911514 TGTCTCCTAACCAAAAAGTTGC 57.088 40.909 0.00 0.00 33.01 4.17
2219 2453 8.307582 TCTTCTAATAGGAAATCCGACTCTTT 57.692 34.615 0.00 0.00 42.08 2.52
2227 2461 6.749036 TCACCCTCTTCTAATAGGAAATCC 57.251 41.667 0.00 0.00 34.58 3.01
2233 2467 7.309770 AGCTATTTCACCCTCTTCTAATAGG 57.690 40.000 0.00 0.00 0.00 2.57
2246 2480 7.988028 ACTCTACTTTGGAATAGCTATTTCACC 59.012 37.037 24.42 18.44 31.15 4.02
2285 2519 7.881775 ACTGGGGTTTCTTATGATGTTATTC 57.118 36.000 0.00 0.00 0.00 1.75
2287 2521 8.557450 AGTTACTGGGGTTTCTTATGATGTTAT 58.443 33.333 0.00 0.00 0.00 1.89
2288 2522 7.827236 CAGTTACTGGGGTTTCTTATGATGTTA 59.173 37.037 4.14 0.00 0.00 2.41
2307 2541 6.010850 TGAGAGTAATCCACACTCAGTTACT 58.989 40.000 5.38 0.00 46.11 2.24
2370 2604 8.005007 ACTAGTAAGTGGCACAACAAGTGATAG 61.005 40.741 21.41 14.38 44.16 2.08
2371 2605 6.239487 ACTAGTAAGTGGCACAACAAGTGATA 60.239 38.462 21.41 4.30 44.16 2.15
2415 2649 9.838975 GTTTGGAATTGTTTTGTTTCTGAAATT 57.161 25.926 6.06 0.00 0.00 1.82
2416 2650 8.174422 CGTTTGGAATTGTTTTGTTTCTGAAAT 58.826 29.630 6.06 0.00 0.00 2.17
2417 2651 7.171678 ACGTTTGGAATTGTTTTGTTTCTGAAA 59.828 29.630 0.00 0.00 0.00 2.69
2418 2652 6.647067 ACGTTTGGAATTGTTTTGTTTCTGAA 59.353 30.769 0.00 0.00 0.00 3.02
2419 2653 6.159988 ACGTTTGGAATTGTTTTGTTTCTGA 58.840 32.000 0.00 0.00 0.00 3.27
2420 2654 6.090088 TGACGTTTGGAATTGTTTTGTTTCTG 59.910 34.615 0.00 0.00 0.00 3.02
2421 2655 6.090223 GTGACGTTTGGAATTGTTTTGTTTCT 59.910 34.615 0.00 0.00 0.00 2.52
2422 2656 6.090223 AGTGACGTTTGGAATTGTTTTGTTTC 59.910 34.615 0.00 0.00 0.00 2.78
2423 2657 5.929415 AGTGACGTTTGGAATTGTTTTGTTT 59.071 32.000 0.00 0.00 0.00 2.83
2424 2658 5.347364 CAGTGACGTTTGGAATTGTTTTGTT 59.653 36.000 0.00 0.00 0.00 2.83
2425 2659 4.862018 CAGTGACGTTTGGAATTGTTTTGT 59.138 37.500 0.00 0.00 0.00 2.83
2426 2660 4.267452 CCAGTGACGTTTGGAATTGTTTTG 59.733 41.667 8.52 0.00 36.55 2.44
2427 2661 4.158764 TCCAGTGACGTTTGGAATTGTTTT 59.841 37.500 13.08 0.00 40.41 2.43
2428 2662 3.697045 TCCAGTGACGTTTGGAATTGTTT 59.303 39.130 13.08 0.00 40.41 2.83
2429 2663 3.283751 TCCAGTGACGTTTGGAATTGTT 58.716 40.909 13.08 0.00 40.41 2.83
2430 2664 2.925724 TCCAGTGACGTTTGGAATTGT 58.074 42.857 13.08 0.00 40.41 2.71
2431 2665 3.980646 TTCCAGTGACGTTTGGAATTG 57.019 42.857 19.83 1.59 45.87 2.32
2435 2669 3.006940 GCATATTCCAGTGACGTTTGGA 58.993 45.455 11.85 11.85 41.59 3.53
2436 2670 2.223021 CGCATATTCCAGTGACGTTTGG 60.223 50.000 8.02 8.02 35.74 3.28
2437 2671 2.670905 TCGCATATTCCAGTGACGTTTG 59.329 45.455 0.00 0.00 0.00 2.93
2438 2672 2.967362 TCGCATATTCCAGTGACGTTT 58.033 42.857 0.00 0.00 0.00 3.60
2439 2673 2.665649 TCGCATATTCCAGTGACGTT 57.334 45.000 0.00 0.00 0.00 3.99
2440 2674 2.665649 TTCGCATATTCCAGTGACGT 57.334 45.000 0.00 0.00 0.00 4.34
2441 2675 4.536364 AATTTCGCATATTCCAGTGACG 57.464 40.909 0.00 0.00 0.00 4.35
2442 2676 5.879237 TGAAATTTCGCATATTCCAGTGAC 58.121 37.500 13.34 0.00 0.00 3.67
2443 2677 5.879777 TCTGAAATTTCGCATATTCCAGTGA 59.120 36.000 13.34 0.00 0.00 3.41
2444 2678 6.122850 TCTGAAATTTCGCATATTCCAGTG 57.877 37.500 13.34 0.00 0.00 3.66
2445 2679 6.757897 TTCTGAAATTTCGCATATTCCAGT 57.242 33.333 13.34 0.00 0.00 4.00
2446 2680 8.638685 AATTTCTGAAATTTCGCATATTCCAG 57.361 30.769 19.79 2.99 37.84 3.86
2482 2716 6.667661 ACCCAAAATTCAAAAGAATTCCCAA 58.332 32.000 0.65 0.00 34.06 4.12
2483 2717 6.259346 ACCCAAAATTCAAAAGAATTCCCA 57.741 33.333 0.65 0.00 34.06 4.37
2485 2719 8.681806 TGAAAACCCAAAATTCAAAAGAATTCC 58.318 29.630 0.65 0.00 34.06 3.01
2550 2785 3.179443 ACGCTGAAGTTTTGAGTCAGA 57.821 42.857 4.14 0.00 41.08 3.27
2552 2787 4.185394 TGTAACGCTGAAGTTTTGAGTCA 58.815 39.130 0.00 0.00 35.70 3.41
2562 2797 4.688879 TCCAATGTACTTGTAACGCTGAAG 59.311 41.667 0.00 0.00 32.61 3.02
2637 2872 3.738590 GCAGGGAAAAGCACGGTTAAAAA 60.739 43.478 0.00 0.00 0.00 1.94
2641 2876 1.231958 CGCAGGGAAAAGCACGGTTA 61.232 55.000 0.00 0.00 0.00 2.85
2654 2889 2.418746 GGTGCATCCTATATACGCAGGG 60.419 54.545 0.00 0.00 32.31 4.45
2658 2893 2.233922 AGTGGGTGCATCCTATATACGC 59.766 50.000 18.94 0.00 36.25 4.42
2677 2912 1.458639 GCCACAAGCAGCCAAGAAGT 61.459 55.000 0.00 0.00 42.97 3.01
2693 2928 1.630369 AGATGAACCTTGTAGCTGCCA 59.370 47.619 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.