>input_sequence_70928
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGGTGAAGAGCGCGCAGCAGCAGCAGCAGGTGGCGCTCGGCGGCCACGTC
GGCAATGCGGTGGCGGCGAGGCAGGGCGGCGGCGGCGGCGGGGGCAGGCAGCAG---CAGCAGCAGTACAAGGGCGTGCG
GATGCGGAGCTGGGGGTCGTGGGTGTCGGAGATCCGGGCGCCCAACCAGAAGACGCGCATATGGCTCGGCTCCTACTCCA
CCGCCGAGGCCGCCGCGCGCGCCTACGACGCCGCGCTGCTCTGCCTCCGGGGCTCCGCCGCCGACCTCAACTTCCCCGTC
CACCTCCCCTTCCACGTCCCCGCCGCCGCCATGTCGCCCAAGTCCATCCAGCGCGTCGCCGCCGCCGCGGCCGCCACCGC
CG---GCAGCCCCCTGCAGCCTCCCCACACCATGGCCTCCTCTGCCTCCTGGCCCGGCGCCGCCCCGCCGTGCGGCTACG
GCGACAACGCGTCGTCGTTCGGCTACCCGGAGGACCAGTCCGCCCGCCACAGCAACGCCGACGACGACGAGACCATGGCG
CACGGCGACGACGGCGTGGACTACGACGCGCTGGCGGACATCGACGCCTTCTTCCAGTCGCCCAAGTGCATGGACTACGC
CACGATGATGGACCCGTGCAGCACCTTCTTCGCTCCGGCGCCCATGGCGCCCGTCGAGTGGGAGGAGGAAGGCGAGATCA
GCCTCTGGAGCTTCTCCTCCTACAACTGA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr6D_1_TraesCS6D01G309600
AAGAGATTCTACTATGAACCACATACGAATGTATGTGATGCGTTTTAGAGTGCGGATTCACTCATTTTGCTCCGTATATG
GTCCATAGCGAAATCTCTATAAAGACTTATATTTAGGAACGGAGGGAGTAGGATCTAATTTGCAGGATCTTTCCATTATT
TTCAGTTAAGCATGTTCCTTAGTGTTTCCTCTGCGTTATTGCAGATGCAGTAGTACTGTCCTGGGGTGTACAAAAGAAAA
GAAAAGAG-----AAGTACACCCTATGTTCCTAAATACGTATAAAATGTTTGTCTTATACTCT-----------------
-----CTCCGTTCCTAAATATTTGTCTTTCTAAAGATTTCAACAATTGTTTACATACGGAGCAAAATGAGTGAATCTACA
CTCTAAAATATGTCTATATACATCCGTATATGATAGTCCATTTGAAATCTCTAAAAAGACAAATATTTAGGAACGAAGGG
AGTATTTAGAAACAATGGTACTTTGTAAATATAAGATGTTTCTAAATACTTCATCTGTTTTAAAATGTAAGACATTTTTA
GACACTATGACTGTGTCAAAAAATAGTGCCAAAAACCATCTTGCATTTTAAGACAGAGGGAGTATTTACATAGTGTCAAA
AGACGTCTTGCATTTTGAGACAGGGAGATTATTTAGAAACAGAGGTATAGTA----------------------------
-CTAATAGGCTTGTATCAGCGTGATGTGGGCGAAATGA---TATACAAATACAGACTAGAGAGACACACAACCAATTTCA
GGTGAGACAAAGGAAAGCAGAAATGGCCGAGTTTAT-AAAAATGCACACTTCGATGCTCCTGGTTCCTATAAATAAGCCA
TCGGGCGCACCACTCTGCCTGCACCAGCCACACACCCAACCAACCACCCCTAGCTACCACTTCAACCTGCACTGGTCTTC
CCACACTCT---------CATCGGAGTCCAGCGACGCTTCACATCAATCAAAAGAATCAAATTCGTACCGCAGCGAGTAG
CGTCGTCAGTGAGCGTGATCGGCCGGGAAATGGTGAAGAGCGCGCAGCAGCAGCAGCAGGTGGCGCTCGGCGGCCACGTC
GGCAATGCGGTGGCGGCGAGGCAGGGCGGCGGCGGCGGCGGGGGCAGGCAGCAG---CAGCAGCAGTACAAGGGCGTGCG
GATGCGGAGCTGGGGGTCGTGGGTGTCGGAGATCCGGGCGCCCAACCAGAAGACGCGCATATGGCTCGGCTCCTACTCCA
CCGCCGAGGCCGCCGCGCGCGCCTACGACGCCGCGCTGCTCTGCCTCCGGGGCTCCGCCGCCGACCTCAACTTCCCCGTC
CACCTCCCCTTCCACGTCCCCGCCGCCGCCATGTCGCCCAAGTCCATCCAGCGCGTCGCCGCCGCCGCGGCCGCCACCGC
CG---GCAGCCCCCTGCAGCCTCCCCACACCATGGCCTCCTCTGCCTCCTGGCCCGGCGCCGCCCCGCCGTGCGGCTACG
GCGACAACGCGTCGTCGTTCGGCTACCCGGAGGACCAGTCCGCCCGCCACAGCAACGCCGACGACGACGAGACCATGGCG
CACGGCGACGACGGCGTGGACTACGACGCGCTGGCGGACATCGACGCCTTCTTCCAGTCGCCCAAGTGCATGGACTACGC
CACGATGATGGACCCGTGCAGCACCTTCTTCGCTCCGGCGCCCATGGCGCCCGTCGAGTGGGAGGAGGAAGGCGAGATCA
GCCTCTGGAGCTTCTCCTCCTACAACTGATCGAGCTCGAATGCCAGCTCCGGCCAC------------------------
-GAGAGCTTCGAGCTTCG--AGCTTCGACCGGTCAAATCACCACTAAGCAATTCCATCAACACTGACAGATTAATTAC-C
AACTACCACTACGAGTGACCAAGAATTGGTCACGGTAAAAATAATCGCAGGCCATGATCAATTCTTACTTCATGGCCTCG
CGAAGAATGATGATTAATTATTATTTCATTCATATTCCGTAGCTAAATATAATATACTAGTACCACTGGCGTACTAGTAG
---TACGTATCCGTACTGGGCCAATTATGCATTTGTGGGGG-AGCTCTGATGGAGCTACATGTTTTAAGGCAGCTTCCAT
GGAGCCAACTCCCATCAATTAGTT-ACATGTGTAC---------------------------------------------
--------------------------------------------------------------------------------
TATGTGTAAAAGCTGTTTGTGCAAGTGTGCAAGCAATGTGTTATGGTGATGAATTACCGCTTTAATTTTGCTTCGTTTTA
GGTGAGTATTCTACATGTTCTAAAGGCAACTTTTTGGTTAGGAGACATGGTAAAAGAGTCGGATTTCCTATTAGAAGAGG
GTGAAATAGCTATTCCAAAGTAGAGTTATTTTCAAGAGGAATAACATCATAAGAAACCCCAGTAACTGAGTGTGGATTAC
TCTCAAAACACCCTAGCAATTGATGGCGGTTGGCTAATGTCACCTATCACTTGTTGTGCCACTTACTAGTGAGTGTCTTG
ATAAGTTAAATTTCAGAAACAAAACAATTCCAAACGTCACTGGAATATGCGAAATTTCAGAAATTTCACATTTTTTTGGG
AATTCTTTTGAATTTTGGGTTTTCAAAATCCATTAAATTTTAGCCTTT-TTTTGGTAGTCTGAATCTGACTCAAAACTTC
AGCGTTACAAGTACATTGGACCTCACTAAAATATGCAAAATTTAGGAAATTACATTGAAACTTTGTTGAATTTTTTAACC
GTGCTTTTCCCTGCGTATATAGGATGCACCCACTTCTTGGCTGCTTGTGGCAGCTACAAGGTTCATCT
>chr6B_129
--------------------------------------------------------------------------------
------------------------------------------------TATGATCGAATTTGCATGATCTTTCCATTATT
TGCAGTTAAGCATGTTCCTTAGTGTTTCCTCTGCGTTATTGCAGACGCAGTAGTACTGTACCGAGGTGTACAAAAGAACA
GAAGAGGAAAGGAAAATACACTCTATGTTCCTAAATA----TAAGATGTTTGTCTTGTAGTATTTAGATTAGAAGCAAGG
TACTGCTCCGTCCCATAATATAAGACGTTTTTTGACACTAGTGTAGTGTCAAAAAACATCTTACATTATGAGACGGAGGG
A-------------------------------------------------------------------------------
-----------------GTACTTTGTAAATATAAGACGTTTGTAAATACTTTATCTGTCTTAAAATGTAAGATGCTTTTT
GATACTTTGACAGTGTCA-----------------------------------------------------------AAA
AAACGTATTGCATTTCTGAACA--GAGAGTATTTAGAAACAGAGGTCTACTGCTATTTTTTTTGTGGGAAGGTCTATAAT
GCTAATAAGCTTGTATCAGCGTGATGTGGGCGAAATGGTTTTATACAAACGCAGACCAGAGAGACACACAACCAATTTCA
GGTGAGACAAAGGAAAGCAGAAATGGCCGAGTTTAT-AAAAATGCACGCTTTGATGCTCCTGGTTCCTATAAATAAGCCA
TCGGGCACACCACTCTGCCTGCACCAGCCACACACCCAACCAACCACCCCTAGCTACCACTTCAACCTGCACTGGTCTCT
GCACACTC------------TCGGAGTTCAGCGTCGCTCGCAG---ATCAAAGAAGTCAAGTTCGTGTCACAGCGAGGAG
CGTCGTCGGTGAGCGTGATCGGTCGGGAAATGGTGAAGAGCGCGCAGCAGCAGCCGCAGGGGGTGCTCGGCGGCGACGGC
GGCAATGCGGTGGCGGCGAGGCAGGGCGGCGGCGGCGGCGGG---AGGCAGCAG---CAGCAGCAGTACAAGGGCGTGCG
GATGCGGAGCTGGGGGTCGTGGGTGTCGGAGATCCGGGCGCCCAACCAGAAGACGCGCATATGGCTCGGCTCCTACTCCA
CCGCCGAGGCCGCCGCGCGCGCCTACGACGCCGCGCTGCTCTGCCTCCGGGGCTCCGCCGCCGACCTCAACTTCCCCGTG
CACCTCCCCTTCCACGTCCCCGCCGCCGCCATGTCGCCCAAGTCCATCCAGCGCGTCGCCGCCGCCGCCGCCGCCAGTGC
CGGCAGCAGCCCCCTGCAGCCTCCCCACACCATGGCCTCCTCTGCCTCCTGGCCCGGCGCCGCCCCGCCGTGCGGCTACG
GCAACAACGCGTCGTCCTTCGGCTCCCCAGAGGACCAGTCCGCCCGCCACAGCAACGCCGACGACGACGAGACCATGGCG
CACGGCGACGACGGCGTGGACTACGACGCGCTGGCGGACATCGACGCCTTCTTCCAGTCGCCCAAGTGCATGGACTACGC
CATGATGATGGACCCGTGCAGCACCTTCTTCGCGCCGGCGCCCATGGCGCCCGTCGAGTGGGAGGAGGAAGGCGAGATCA
GCCTCTGGAGCTTCTCCTCCTACAACTGATCGAGCTCAAATGCCAGCTTCGACCGAGAGCTTCGAGCTTCGAGCTTCGAC
TGGCCATGGAGGCCATTTCATGCTTCGACTGGTCAAATCACCACTAAGCAATTCCATCAACACTGACAGATTAATTACTC
AACTACCACTACGAGTGACCAAGAATTGGTCACGGTAAAAATAATCGCAGGCCATGATCAATTCTTACTTCATGGCCTCG
CGAAGAATGATGATTAATTATTATTTCATTCATATTCCGTAGCTAAATATAATATACTAGTACCACTGGCGTACTAGTAG
---TACGTAGCCGTACAAGGCCAATTATGCATTTGTGGGGG-AGGTCTGATGGAGCTACATGTTTTAAGGCAGCTTCCAT
GGAGCCAACTCCCTTCAATTAGTTTACATGTGTACTA-------------------------------------------
-------------------------------------------------------------------------------G
TATGTGTAAAAGCTGTTTGTGCAAGTGTGCAAGCAATGGGTTATGATGATGAATTACCTCTTTAATTTTGCTTCGTTCTA
GGTGAGTACTCTACATGTTCTAAAGTCAACCTTTTGGTTAGGAGACATGGCAGAAGAGTCACATTTTCTATTTGAAGAGA
GTGAAATAGCCGTTCCAAAGTAGAGTTCTTTTCAAGAGAACCAACATCATAAGAAACCCCGGTAACTGAGTGTGGATTAC
TCTCAAAACACCCTAGCAATTGATGGCGGTTGGCTAATGTCACACATCACTTGTCGTGCCACTTTCTAGTTTGTGTCTTG
ATAAGTTCGGA--------------------------------AATATGCGAAATTTCGGAAATTTCACATTTTTAAG--
--TTCTTTTGAATTTTGATTTTTTAAAATCCATTAAATTTTAACATATATTTTGGTGGTCTGAACCCGACTCAAAATTTC
AGCGTTACAAGTACATTGGACCTCACTGCAATATGCAAAATTTAGGAAATTTCATTGGAACATCGTTGAATATTTGAACC
GTGCTTTTTCCTACGTATATAGGATGCACCCGCTTCTTAGCCGCTTGCGGCAGCTACGAGGTTCATCT
>chr6A_607
TGTC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAA
AATTGACTTGCATTTTAAGACATGGGGAGTAGTTAGAAACGGAGGTCTGGTGGTGCC-----------------------
------AAGCTTGTATCAGCGTGATGTGGGCGAAATCGTTTTATACAAACACGGACT--AGAGACACACAACCAATTTCA
GGTGAGACAAAGGAAAGCAGAAATGGCCGAGTTTTTAAAAAATGCACGCTTTGGTGCCCCTGGTTCCTATAAATAAGCCA
TCGGGCGCACCACTCTGCCTGCACCAGCCACACACCCAACCAACCACCCCTAGCTACCACTTCAACCTGCACTGGTCTCT
TCACACTCTCCTCGCGACCATCGGAGTTCAGCGGCGCTCGCAC---ATCAAAGAAATCAAGTTCGTGCCACGGCGAGGAG
CGTCGTCGGTGAGCGTGATCGGTCCGGAAATGGTGAAGAGCGCGCAGCAGCAG------GTGGCGCTTGGCGGCGACGGC
GGCAATGCGGCGGCGGCGAGGCAGGGCGGCGGCGGCGGCGGG---AGGCAGCAGCAGCAGCAGCAGTACAAGGGCGTGCG
GATGCGGAGCTGGGGGTCGTGGGTGTCGGAGATCCGGGCGCCCAACCAGAAGACGCGCATATGGCTCGGCTCCTACTCCA
CCGCCGAGGCCGCCGCGCGCGCCTACGACGCCGCGCTGCTCTGCCTCCGGGGCTCCGCCGCCGACCTCAACTTCCCCGTC
CACCTCCCCTTCCACGTCCCCGCCGCCGCCATGTCGCCCAAGTCCATCCAACGCGTCGCCGCCGCCGCCGCCGCCACCGC
CG---GCAGCCCCCTGCAGCCTCCCCACACCATGGCCTCCTCTGCCTCCTGGCCCGGCGCCGCCCCGCCGTGCGGCTACG
GCGACAACGCGCCGTCCTTCGGCTCCCCGGAGGACCAGTCCGCCCGCCACAGCAACGCCGACGACGACGAGACCATGGCG
CACGGCGACGACGGCGTGGACTACGACGCGCTGGCGGACATCGACGCCTTCTTCCAGTCGCCCAAGTGCATGGACTACGC
CACGATGATGGACCCGTGCAGCACCTTCTTCGCGCCGGCGCCCATGGCGCCCGTCGAGTGGGAGGAGGAAGGCGAGATCA
GCCTCTGGAGCTTCTCCTCCTACAACTGATCGAGCTCAAATGGCAGCTCCGGCCAC------------------------
-GGCCATGGAGGGCATTTCAAGCTTCGGCCGGTCAAATCACCACTAAGCAATTCCATCAATACTGACAGATTAATTACTC
AACTACCACTACGAGTGACCAAGAATTGGTCACGGTAAAAATAATCGCGGGCCATGATCAATTCTTACTTCATGGCCTCG
CGAAGGATGATGATTAATTATTATTTCATTCATATTCCGTAGCTAAATATAATATGCTAGTGCCACTGGCGTACTAGTAG
TACTACGTATCCGTACTAGGCCAATTATACATTTGTGGGGGGAGCTCTGATGGAGCTACATGTTTTAAGGCAGCTTCCAT
GGAGCCAACTCCCTTCAACTAGTTTACATGTGTACTACTCCCTCTGTTCCGAATTACTTGTCTTAGATTTGTCTAGATAC
GGAGGTATCTAGCACTAAAATGAGTCTAGATACATCTGTATGTAGACAAATCCAAGACAAGTAATTCGGAACGGAGGGAG
TATGTGTAAAAGCTGTTTGTGCAAGTGTGCAAGCAATGGGTTATGATGATGAATTGCTTCTTTAATTTTGCTTTGTTTTA
GGTGAGTACTCTACATGTTCTAAAGTCAACTTTTTGGTTAGGAGACATGGCAGAAGAGTCACATTTTCTATTAGA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----S--------S---------------
-S-------------------------------------------S-------------S-S-S--------------S-
---S--SS-------S-----S---------------SSSS---S-----------S--S-S------------------
-----------S--SS-----SS-S-S--S-SSSSSSS-SSSSS-S---SS-S-S--SSSSS-S-S-SS-S--SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-------------------S----S---------S------S-------------SSS----S
--S---S----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-S--------------S-----S-----S-----------------S----S----------------------------
-------S-----------------------------S-----------S------------------------------
-----------------------------------------------S---S----------------------------
------------------------------------------------------------------------------SS
S--------------------------S-----S----SSSSSSSS------SS------S-----S--S-------S--
-------S--------------S-------------------------------S-------------------S---S-
------------------------------------------SSS-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
----------------S-------S-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
-------------------------------------S------------------------------------------
--SSSSSSSS-S--S-SS--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S------S------------S---------------------
--------S----------------S------------------------S-S-------SS----S------------S
----------SS---------------S----------S-SS------------------S-------------------
-------------------------------------------SS---------S---------S-----SS--------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----------------SS-SS
SS---------------SS----S------------------S-S-S---------S-------S-S---------S---
---------------------------SS----------------------S-----S---S-S-------S---S----
--------S---S------------------S------S--S-----S---------S----------
>forward_961
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TCAACCTGCACTGGTCTTC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_1857
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CGAGCTTCGACCGGTCAAAT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
