Multiple sequence alignment - TraesCS6D01G287100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G287100 chr6D 100.000 3067 0 0 1 3067 396012537 396009471 0.000000e+00 5664.0
1 TraesCS6D01G287100 chr6D 93.182 44 1 2 2661 2703 396009842 396009800 2.550000e-06 63.9
2 TraesCS6D01G287100 chr6B 92.351 2693 102 46 1 2661 592465981 592463361 0.000000e+00 3736.0
3 TraesCS6D01G287100 chr6B 84.881 377 55 2 2693 3067 133701639 133701263 2.230000e-101 379.0
4 TraesCS6D01G287100 chr6B 84.840 376 55 2 2694 3067 590915216 590914841 8.030000e-101 377.0
5 TraesCS6D01G287100 chr6A 92.236 2576 96 44 1 2556 542432071 542429580 0.000000e+00 3554.0
6 TraesCS6D01G287100 chr2D 85.714 371 50 3 2699 3067 372703076 372702707 3.710000e-104 388.0
7 TraesCS6D01G287100 chr5B 84.921 378 53 4 2693 3067 508816888 508816512 2.230000e-101 379.0
8 TraesCS6D01G287100 chr5B 76.991 339 68 9 1330 1666 662036909 662036579 5.220000e-43 185.0
9 TraesCS6D01G287100 chr5B 71.275 745 149 57 1329 2046 619927207 619926501 2.480000e-26 130.0
10 TraesCS6D01G287100 chr7D 85.027 374 51 3 2693 3064 511647934 511648304 2.890000e-100 375.0
11 TraesCS6D01G287100 chr4B 84.615 377 56 2 2693 3067 419611277 419610901 1.040000e-99 374.0
12 TraesCS6D01G287100 chr5D 84.433 379 53 4 2693 3067 508612227 508612603 4.830000e-98 368.0
13 TraesCS6D01G287100 chr5D 77.647 340 64 8 1330 1666 526572112 526571782 2.410000e-46 196.0
14 TraesCS6D01G287100 chr5D 74.000 350 66 21 1330 1671 499246583 499246251 5.370000e-23 119.0
15 TraesCS6D01G287100 chr2B 84.350 377 57 2 2693 3067 745042557 745042933 4.830000e-98 368.0
16 TraesCS6D01G287100 chr4D 84.350 377 56 3 2693 3067 350548980 350549355 1.740000e-97 366.0
17 TraesCS6D01G287100 chr1A 83.387 313 39 10 1754 2061 495192326 495192022 8.380000e-71 278.0
18 TraesCS6D01G287100 chr1B 82.650 317 42 10 1750 2061 533324016 533323708 5.040000e-68 268.0
19 TraesCS6D01G287100 chr1D 82.099 324 44 12 1743 2061 397973297 397972983 6.520000e-67 265.0
20 TraesCS6D01G287100 chr3A 82.215 298 42 7 1753 2046 594493030 594493320 2.360000e-61 246.0
21 TraesCS6D01G287100 chr3A 75.585 299 60 11 1753 2046 224378464 224378754 5.330000e-28 135.0
22 TraesCS6D01G287100 chr3D 81.940 299 43 7 1752 2046 451710640 451710931 3.060000e-60 243.0
23 TraesCS6D01G287100 chr3D 81.605 299 44 7 1752 2046 451886115 451886406 1.420000e-58 237.0
24 TraesCS6D01G287100 chr5A 76.945 347 65 11 1324 1666 653717132 653716797 1.880000e-42 183.0
25 TraesCS6D01G287100 chr5A 73.504 351 68 21 1329 1671 623504298 623503965 3.230000e-20 110.0
26 TraesCS6D01G287100 chr2A 82.474 97 14 1 1488 1581 643443465 643443369 7.050000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G287100 chr6D 396009471 396012537 3066 True 2863.95 5664 96.591 1 3067 2 chr6D.!!$R1 3066
1 TraesCS6D01G287100 chr6B 592463361 592465981 2620 True 3736.00 3736 92.351 1 2661 1 chr6B.!!$R3 2660
2 TraesCS6D01G287100 chr6A 542429580 542432071 2491 True 3554.00 3554 92.236 1 2556 1 chr6A.!!$R1 2555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 687 0.182537 CACTCTCCACCCACCACAAA 59.817 55.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2589 2643 0.104855 ACGAGTTGAAGACAGCAGCA 59.895 50.0 0.0 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
217 229 3.692406 AACCGACTGACCCGAGCC 61.692 66.667 0.00 0.00 0.00 4.70
225 237 2.680352 GACCCGAGCCTGAGACCA 60.680 66.667 0.00 0.00 0.00 4.02
239 251 2.040278 ACCAGAGCTCCTCCCCAG 59.960 66.667 10.93 0.00 0.00 4.45
278 291 3.270027 TCCAGATTTGTGTATTCGCAGG 58.730 45.455 0.00 0.00 35.43 4.85
301 314 0.673437 CACCAAACACCGGAGCAAAT 59.327 50.000 9.46 0.00 0.00 2.32
434 448 3.501828 ACGACAAGCAGTAATGCAATCAA 59.498 39.130 18.53 0.00 37.25 2.57
555 569 2.256461 GCGAACCAAGCAAGCCTG 59.744 61.111 0.00 0.00 34.19 4.85
573 593 2.488167 CCTGCCACTCTAGCTAGCTCTA 60.488 54.545 23.26 9.72 0.00 2.43
576 596 2.094752 GCCACTCTAGCTAGCTCTATGC 60.095 54.545 23.26 13.70 43.29 3.14
613 633 1.977009 CGGCCCCCTTCCAAACTTC 60.977 63.158 0.00 0.00 0.00 3.01
662 682 1.841556 GTCCACTCTCCACCCACCA 60.842 63.158 0.00 0.00 0.00 4.17
666 687 0.182537 CACTCTCCACCCACCACAAA 59.817 55.000 0.00 0.00 0.00 2.83
667 688 0.923358 ACTCTCCACCCACCACAAAA 59.077 50.000 0.00 0.00 0.00 2.44
695 716 0.752743 TTTGTCTTGGCTGCTGCTGT 60.753 50.000 15.64 0.00 39.59 4.40
699 720 2.520020 TTGGCTGCTGCTGTTGCT 60.520 55.556 15.64 0.00 40.48 3.91
700 721 2.749110 CTTGGCTGCTGCTGTTGCTG 62.749 60.000 15.64 0.00 40.48 4.41
1228 1256 4.849310 CCGGCACCATGGGTACGG 62.849 72.222 22.88 22.88 44.47 4.02
1244 1272 2.030958 CGGGCAGTAAACACCGTCC 61.031 63.158 0.00 0.00 41.34 4.79
1259 1287 1.134401 CCGTCCCTCACAGCATTGTAT 60.134 52.381 0.00 0.00 35.25 2.29
2127 2156 6.119240 TGTAGTAGTAGTGGTCAGTAGTGT 57.881 41.667 0.00 0.00 0.00 3.55
2217 2247 1.369091 CCGACGCTCTTTGGGGATTG 61.369 60.000 0.00 0.00 0.00 2.67
2223 2253 1.892329 GCTCTTTGGGGATTGGAAGCA 60.892 52.381 0.00 0.00 0.00 3.91
2278 2308 3.851969 GCTTTTAATTGTCTGGTTAGCGC 59.148 43.478 0.00 0.00 0.00 5.92
2357 2387 3.440415 GCAGCGGTGGTAAAGGCC 61.440 66.667 17.54 0.00 0.00 5.19
2456 2487 3.252458 GTGGATGTTTTGGTGTGGTACTC 59.748 47.826 0.00 0.00 0.00 2.59
2457 2488 3.137544 TGGATGTTTTGGTGTGGTACTCT 59.862 43.478 0.00 0.00 0.00 3.24
2458 2489 4.142038 GGATGTTTTGGTGTGGTACTCTT 58.858 43.478 0.00 0.00 0.00 2.85
2459 2490 4.215613 GGATGTTTTGGTGTGGTACTCTTC 59.784 45.833 0.00 0.00 0.00 2.87
2460 2491 4.497291 TGTTTTGGTGTGGTACTCTTCT 57.503 40.909 0.00 0.00 0.00 2.85
2461 2492 4.196193 TGTTTTGGTGTGGTACTCTTCTG 58.804 43.478 0.00 0.00 0.00 3.02
2556 2587 5.605488 TGTTTTACTTCCTTCCCTACTGAGT 59.395 40.000 0.00 0.00 0.00 3.41
2557 2588 5.740290 TTTACTTCCTTCCCTACTGAGTG 57.260 43.478 0.00 0.00 0.00 3.51
2563 2617 3.526430 TCCTTCCCTACTGAGTGCTAGTA 59.474 47.826 0.00 0.00 0.00 1.82
2568 2622 4.017808 CCCTACTGAGTGCTAGTACTTGT 58.982 47.826 15.09 17.30 0.00 3.16
2571 2625 3.497332 ACTGAGTGCTAGTACTTGTCCA 58.503 45.455 15.09 7.34 0.00 4.02
2581 2635 5.181245 GCTAGTACTTGTCCAATCTTGCAAA 59.819 40.000 0.00 0.00 0.00 3.68
2588 2642 7.147976 ACTTGTCCAATCTTGCAAATTTACTC 58.852 34.615 0.00 0.00 0.00 2.59
2589 2643 6.899393 TGTCCAATCTTGCAAATTTACTCT 57.101 33.333 0.00 0.00 0.00 3.24
2590 2644 6.680810 TGTCCAATCTTGCAAATTTACTCTG 58.319 36.000 0.00 0.00 0.00 3.35
2608 2662 0.104855 TGCTGCTGTCTTCAACTCGT 59.895 50.000 0.00 0.00 0.00 4.18
2617 2671 4.627058 TGTCTTCAACTCGTAAATGAGCA 58.373 39.130 0.00 0.00 39.68 4.26
2621 2675 4.742438 TCAACTCGTAAATGAGCAAACC 57.258 40.909 0.00 0.00 39.68 3.27
2626 2680 4.452455 ACTCGTAAATGAGCAAACCTTCAG 59.548 41.667 0.00 0.00 39.68 3.02
2632 2686 1.140052 TGAGCAAACCTTCAGACGGAA 59.860 47.619 0.00 0.00 0.00 4.30
2633 2687 2.218603 GAGCAAACCTTCAGACGGAAA 58.781 47.619 0.00 0.00 34.44 3.13
2640 2694 2.039084 ACCTTCAGACGGAAAGCAGATT 59.961 45.455 0.00 0.00 34.44 2.40
2641 2695 3.077359 CCTTCAGACGGAAAGCAGATTT 58.923 45.455 0.00 0.00 34.44 2.17
2661 2715 4.749245 TTCTTTTCTGGTCGATTTCTGC 57.251 40.909 0.00 0.00 0.00 4.26
2662 2716 3.738982 TCTTTTCTGGTCGATTTCTGCA 58.261 40.909 0.00 0.00 0.00 4.41
2663 2717 3.748048 TCTTTTCTGGTCGATTTCTGCAG 59.252 43.478 7.63 7.63 0.00 4.41
2664 2718 1.442769 TTCTGGTCGATTTCTGCAGC 58.557 50.000 9.47 0.00 0.00 5.25
2665 2719 0.391661 TCTGGTCGATTTCTGCAGCC 60.392 55.000 9.47 2.79 0.00 4.85
2666 2720 1.372087 CTGGTCGATTTCTGCAGCCC 61.372 60.000 9.47 0.54 0.00 5.19
2667 2721 2.464459 GGTCGATTTCTGCAGCCCG 61.464 63.158 9.47 9.48 0.00 6.13
2668 2722 2.819595 TCGATTTCTGCAGCCCGC 60.820 61.111 9.47 0.00 42.89 6.13
2669 2723 3.880846 CGATTTCTGCAGCCCGCC 61.881 66.667 9.47 0.00 41.33 6.13
2670 2724 3.880846 GATTTCTGCAGCCCGCCG 61.881 66.667 9.47 0.00 41.33 6.46
2671 2725 4.722700 ATTTCTGCAGCCCGCCGT 62.723 61.111 9.47 0.00 41.33 5.68
2682 2736 2.125512 CCGCCGTGGGAAAGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
2683 2737 2.125512 CGCCGTGGGAAAGAGAGG 60.126 66.667 0.00 0.00 0.00 3.69
2684 2738 2.269241 GCCGTGGGAAAGAGAGGG 59.731 66.667 0.00 0.00 0.00 4.30
2685 2739 2.593956 GCCGTGGGAAAGAGAGGGT 61.594 63.158 0.00 0.00 0.00 4.34
2686 2740 1.262640 GCCGTGGGAAAGAGAGGGTA 61.263 60.000 0.00 0.00 0.00 3.69
2687 2741 1.272807 CCGTGGGAAAGAGAGGGTAA 58.727 55.000 0.00 0.00 0.00 2.85
2688 2742 1.207329 CCGTGGGAAAGAGAGGGTAAG 59.793 57.143 0.00 0.00 0.00 2.34
2689 2743 1.207329 CGTGGGAAAGAGAGGGTAAGG 59.793 57.143 0.00 0.00 0.00 2.69
2690 2744 1.560146 GTGGGAAAGAGAGGGTAAGGG 59.440 57.143 0.00 0.00 0.00 3.95
2691 2745 1.153565 TGGGAAAGAGAGGGTAAGGGT 59.846 52.381 0.00 0.00 0.00 4.34
2692 2746 1.838715 GGGAAAGAGAGGGTAAGGGTC 59.161 57.143 0.00 0.00 0.00 4.46
2693 2747 1.481363 GGAAAGAGAGGGTAAGGGTCG 59.519 57.143 0.00 0.00 0.00 4.79
2694 2748 1.481363 GAAAGAGAGGGTAAGGGTCGG 59.519 57.143 0.00 0.00 0.00 4.79
2695 2749 0.325390 AAGAGAGGGTAAGGGTCGGG 60.325 60.000 0.00 0.00 0.00 5.14
2696 2750 2.365237 AGAGGGTAAGGGTCGGGC 60.365 66.667 0.00 0.00 0.00 6.13
2697 2751 2.686106 GAGGGTAAGGGTCGGGCA 60.686 66.667 0.00 0.00 0.00 5.36
2698 2752 2.687566 AGGGTAAGGGTCGGGCAG 60.688 66.667 0.00 0.00 0.00 4.85
2699 2753 4.484872 GGGTAAGGGTCGGGCAGC 62.485 72.222 0.00 0.00 0.00 5.25
2700 2754 4.484872 GGTAAGGGTCGGGCAGCC 62.485 72.222 1.26 1.26 43.93 4.85
2701 2755 4.484872 GTAAGGGTCGGGCAGCCC 62.485 72.222 22.33 22.33 44.82 5.19
2717 2771 2.125512 CCGCCGTGGGAAAGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
2718 2772 2.125512 CGCCGTGGGAAAGAGAGG 60.126 66.667 0.00 0.00 0.00 3.69
2719 2773 2.269241 GCCGTGGGAAAGAGAGGG 59.731 66.667 0.00 0.00 0.00 4.30
2720 2774 2.593956 GCCGTGGGAAAGAGAGGGT 61.594 63.158 0.00 0.00 0.00 4.34
2721 2775 1.262640 GCCGTGGGAAAGAGAGGGTA 61.263 60.000 0.00 0.00 0.00 3.69
2722 2776 1.272807 CCGTGGGAAAGAGAGGGTAA 58.727 55.000 0.00 0.00 0.00 2.85
2723 2777 1.207329 CCGTGGGAAAGAGAGGGTAAG 59.793 57.143 0.00 0.00 0.00 2.34
2724 2778 1.207329 CGTGGGAAAGAGAGGGTAAGG 59.793 57.143 0.00 0.00 0.00 2.69
2725 2779 1.560146 GTGGGAAAGAGAGGGTAAGGG 59.440 57.143 0.00 0.00 0.00 3.95
2726 2780 1.153565 TGGGAAAGAGAGGGTAAGGGT 59.846 52.381 0.00 0.00 0.00 4.34
2727 2781 1.838715 GGGAAAGAGAGGGTAAGGGTC 59.161 57.143 0.00 0.00 0.00 4.46
2728 2782 1.481363 GGAAAGAGAGGGTAAGGGTCG 59.519 57.143 0.00 0.00 0.00 4.79
2729 2783 0.903236 AAAGAGAGGGTAAGGGTCGC 59.097 55.000 0.00 0.00 0.00 5.19
2730 2784 0.976590 AAGAGAGGGTAAGGGTCGCC 60.977 60.000 0.00 0.00 0.00 5.54
2731 2785 1.684734 GAGAGGGTAAGGGTCGCCA 60.685 63.158 0.00 0.00 0.00 5.69
2732 2786 1.957765 GAGAGGGTAAGGGTCGCCAC 61.958 65.000 0.00 0.00 0.00 5.01
2733 2787 3.366739 GAGGGTAAGGGTCGCCACG 62.367 68.421 0.00 0.00 0.00 4.94
2753 2807 2.544359 CGTATCGCGGCGGAAATG 59.456 61.111 23.46 9.66 36.85 2.32
2754 2808 2.935955 GTATCGCGGCGGAAATGG 59.064 61.111 23.46 0.00 0.00 3.16
2755 2809 2.970324 TATCGCGGCGGAAATGGC 60.970 61.111 23.46 0.00 0.00 4.40
2756 2810 3.741830 TATCGCGGCGGAAATGGCA 62.742 57.895 23.46 0.00 0.00 4.92
2761 2815 3.211963 GGCGGAAATGGCAGCGAT 61.212 61.111 0.00 0.00 0.00 4.58
2762 2816 2.025156 GCGGAAATGGCAGCGATG 59.975 61.111 0.00 0.00 0.00 3.84
2763 2817 2.717485 CGGAAATGGCAGCGATGG 59.283 61.111 1.46 0.00 0.00 3.51
2764 2818 1.819208 CGGAAATGGCAGCGATGGA 60.819 57.895 1.46 0.00 0.00 3.41
2765 2819 1.168407 CGGAAATGGCAGCGATGGAT 61.168 55.000 1.46 0.00 0.00 3.41
2766 2820 0.313043 GGAAATGGCAGCGATGGATG 59.687 55.000 1.46 0.00 0.00 3.51
2772 2826 2.029518 CAGCGATGGATGCGGCTA 59.970 61.111 0.00 0.00 37.44 3.93
2773 2827 1.595109 CAGCGATGGATGCGGCTAA 60.595 57.895 0.00 0.00 37.44 3.09
2774 2828 0.952497 CAGCGATGGATGCGGCTAAT 60.952 55.000 0.00 0.00 37.44 1.73
2775 2829 0.952497 AGCGATGGATGCGGCTAATG 60.952 55.000 0.00 0.00 37.44 1.90
2776 2830 1.499056 CGATGGATGCGGCTAATGC 59.501 57.895 0.00 0.00 38.76 3.56
2777 2831 1.499056 GATGGATGCGGCTAATGCG 59.501 57.895 0.00 0.00 40.82 4.73
2778 2832 1.915614 GATGGATGCGGCTAATGCGG 61.916 60.000 0.00 0.00 40.82 5.69
2804 2858 4.760047 GCGGCCGCAGAGGAGAAA 62.760 66.667 43.55 0.00 45.00 2.52
2805 2859 2.510238 CGGCCGCAGAGGAGAAAG 60.510 66.667 14.67 0.00 45.00 2.62
2806 2860 2.982130 GGCCGCAGAGGAGAAAGA 59.018 61.111 0.00 0.00 45.00 2.52
2807 2861 1.448717 GGCCGCAGAGGAGAAAGAC 60.449 63.158 0.00 0.00 45.00 3.01
2808 2862 1.293498 GCCGCAGAGGAGAAAGACA 59.707 57.895 0.00 0.00 45.00 3.41
2809 2863 0.107945 GCCGCAGAGGAGAAAGACAT 60.108 55.000 0.00 0.00 45.00 3.06
2810 2864 1.649664 CCGCAGAGGAGAAAGACATG 58.350 55.000 0.00 0.00 45.00 3.21
2811 2865 1.005340 CGCAGAGGAGAAAGACATGC 58.995 55.000 0.00 0.00 0.00 4.06
2812 2866 1.005340 GCAGAGGAGAAAGACATGCG 58.995 55.000 0.00 0.00 0.00 4.73
2813 2867 1.005340 CAGAGGAGAAAGACATGCGC 58.995 55.000 0.00 0.00 0.00 6.09
2814 2868 0.610174 AGAGGAGAAAGACATGCGCA 59.390 50.000 14.96 14.96 0.00 6.09
2815 2869 0.723981 GAGGAGAAAGACATGCGCAC 59.276 55.000 14.90 0.00 0.00 5.34
2816 2870 0.674895 AGGAGAAAGACATGCGCACC 60.675 55.000 14.90 5.91 0.00 5.01
2817 2871 1.648467 GGAGAAAGACATGCGCACCC 61.648 60.000 14.90 4.56 0.00 4.61
2818 2872 0.955428 GAGAAAGACATGCGCACCCA 60.955 55.000 14.90 0.00 0.00 4.51
2819 2873 1.210155 GAAAGACATGCGCACCCAC 59.790 57.895 14.90 4.76 0.00 4.61
2820 2874 1.514678 GAAAGACATGCGCACCCACA 61.515 55.000 14.90 0.00 0.00 4.17
2821 2875 0.895100 AAAGACATGCGCACCCACAT 60.895 50.000 14.90 0.00 0.00 3.21
2822 2876 0.895100 AAGACATGCGCACCCACATT 60.895 50.000 14.90 0.00 0.00 2.71
2823 2877 1.153978 GACATGCGCACCCACATTG 60.154 57.895 14.90 8.00 0.00 2.82
2824 2878 1.865788 GACATGCGCACCCACATTGT 61.866 55.000 14.90 11.99 0.00 2.71
2825 2879 1.444724 CATGCGCACCCACATTGTG 60.445 57.895 14.90 9.92 36.79 3.33
2826 2880 1.603171 ATGCGCACCCACATTGTGA 60.603 52.632 14.90 0.00 35.23 3.58
2827 2881 1.177895 ATGCGCACCCACATTGTGAA 61.178 50.000 14.90 0.00 35.23 3.18
2828 2882 1.081242 GCGCACCCACATTGTGAAG 60.081 57.895 18.33 11.17 35.23 3.02
2829 2883 1.514678 GCGCACCCACATTGTGAAGA 61.515 55.000 18.33 0.00 35.23 2.87
2830 2884 0.950836 CGCACCCACATTGTGAAGAA 59.049 50.000 18.33 0.00 35.23 2.52
2831 2885 1.336440 CGCACCCACATTGTGAAGAAA 59.664 47.619 18.33 0.00 35.23 2.52
2832 2886 2.742774 GCACCCACATTGTGAAGAAAC 58.257 47.619 18.33 0.00 35.23 2.78
2833 2887 2.858260 GCACCCACATTGTGAAGAAACG 60.858 50.000 18.33 0.00 35.23 3.60
2834 2888 1.953686 ACCCACATTGTGAAGAAACGG 59.046 47.619 18.33 10.80 35.23 4.44
2835 2889 2.226330 CCCACATTGTGAAGAAACGGA 58.774 47.619 18.33 0.00 35.23 4.69
2836 2890 2.621055 CCCACATTGTGAAGAAACGGAA 59.379 45.455 18.33 0.00 35.23 4.30
2837 2891 3.304659 CCCACATTGTGAAGAAACGGAAG 60.305 47.826 18.33 0.00 35.23 3.46
2838 2892 3.300009 CACATTGTGAAGAAACGGAAGC 58.700 45.455 11.45 0.00 35.23 3.86
2839 2893 2.948979 ACATTGTGAAGAAACGGAAGCA 59.051 40.909 0.00 0.00 0.00 3.91
2840 2894 3.003689 ACATTGTGAAGAAACGGAAGCAG 59.996 43.478 0.00 0.00 0.00 4.24
2841 2895 2.613026 TGTGAAGAAACGGAAGCAGA 57.387 45.000 0.00 0.00 0.00 4.26
2842 2896 2.483876 TGTGAAGAAACGGAAGCAGAG 58.516 47.619 0.00 0.00 0.00 3.35
2843 2897 1.801178 GTGAAGAAACGGAAGCAGAGG 59.199 52.381 0.00 0.00 0.00 3.69
2844 2898 1.691976 TGAAGAAACGGAAGCAGAGGA 59.308 47.619 0.00 0.00 0.00 3.71
2845 2899 2.104111 TGAAGAAACGGAAGCAGAGGAA 59.896 45.455 0.00 0.00 0.00 3.36
2846 2900 2.171341 AGAAACGGAAGCAGAGGAAC 57.829 50.000 0.00 0.00 0.00 3.62
2847 2901 1.416401 AGAAACGGAAGCAGAGGAACA 59.584 47.619 0.00 0.00 0.00 3.18
2848 2902 1.531578 GAAACGGAAGCAGAGGAACAC 59.468 52.381 0.00 0.00 0.00 3.32
2849 2903 0.600255 AACGGAAGCAGAGGAACACG 60.600 55.000 0.00 0.00 0.00 4.49
2850 2904 2.383527 CGGAAGCAGAGGAACACGC 61.384 63.158 0.00 0.00 0.00 5.34
2851 2905 1.301716 GGAAGCAGAGGAACACGCA 60.302 57.895 0.00 0.00 0.00 5.24
2852 2906 0.674895 GGAAGCAGAGGAACACGCAT 60.675 55.000 0.00 0.00 0.00 4.73
2853 2907 0.445436 GAAGCAGAGGAACACGCATG 59.555 55.000 0.00 0.00 0.00 4.06
2854 2908 1.580845 AAGCAGAGGAACACGCATGC 61.581 55.000 7.91 7.91 0.00 4.06
2855 2909 3.044059 GCAGAGGAACACGCATGCC 62.044 63.158 13.15 0.00 0.00 4.40
2856 2910 2.045926 AGAGGAACACGCATGCCC 60.046 61.111 13.15 6.99 0.00 5.36
2857 2911 2.045926 GAGGAACACGCATGCCCT 60.046 61.111 13.15 12.34 35.53 5.19
2858 2912 2.045926 AGGAACACGCATGCCCTC 60.046 61.111 13.15 3.31 28.86 4.30
2859 2913 3.499737 GGAACACGCATGCCCTCG 61.500 66.667 13.15 0.00 0.00 4.63
2860 2914 4.166011 GAACACGCATGCCCTCGC 62.166 66.667 13.15 0.00 0.00 5.03
2866 2920 4.166888 GCATGCCCTCGCCTGAGA 62.167 66.667 6.36 0.00 45.57 3.27
2867 2921 2.108566 CATGCCCTCGCCTGAGAG 59.891 66.667 0.00 0.00 45.57 3.20
2868 2922 3.859414 ATGCCCTCGCCTGAGAGC 61.859 66.667 0.00 0.00 45.47 4.09
2870 2924 4.527583 GCCCTCGCCTGAGAGCAG 62.528 72.222 0.00 0.00 44.69 4.24
2871 2925 2.757508 CCCTCGCCTGAGAGCAGA 60.758 66.667 0.00 0.00 45.57 4.26
2872 2926 2.354401 CCCTCGCCTGAGAGCAGAA 61.354 63.158 0.00 0.00 45.57 3.02
2873 2927 1.684386 CCCTCGCCTGAGAGCAGAAT 61.684 60.000 0.00 0.00 45.57 2.40
2874 2928 0.249405 CCTCGCCTGAGAGCAGAATC 60.249 60.000 0.00 0.00 45.57 2.52
2875 2929 0.594540 CTCGCCTGAGAGCAGAATCG 60.595 60.000 0.00 0.00 45.57 3.34
2876 2930 1.032114 TCGCCTGAGAGCAGAATCGA 61.032 55.000 0.00 0.00 45.17 3.59
2877 2931 0.594540 CGCCTGAGAGCAGAATCGAG 60.595 60.000 0.00 0.00 45.17 4.04
2878 2932 0.875474 GCCTGAGAGCAGAATCGAGC 60.875 60.000 0.00 0.00 45.17 5.03
2879 2933 0.594540 CCTGAGAGCAGAATCGAGCG 60.595 60.000 0.00 0.00 45.17 5.03
2880 2934 0.594540 CTGAGAGCAGAATCGAGCGG 60.595 60.000 0.00 0.00 45.17 5.52
2881 2935 1.315981 TGAGAGCAGAATCGAGCGGT 61.316 55.000 0.00 0.00 35.48 5.68
2882 2936 0.593773 GAGAGCAGAATCGAGCGGTC 60.594 60.000 4.06 4.06 35.48 4.79
2883 2937 1.590259 GAGCAGAATCGAGCGGTCC 60.590 63.158 9.39 0.00 35.48 4.46
2884 2938 2.956964 GCAGAATCGAGCGGTCCG 60.957 66.667 6.99 6.99 0.00 4.79
2885 2939 2.490217 CAGAATCGAGCGGTCCGT 59.510 61.111 13.94 0.00 0.00 4.69
2886 2940 1.874019 CAGAATCGAGCGGTCCGTG 60.874 63.158 13.94 3.52 0.00 4.94
2887 2941 3.255379 GAATCGAGCGGTCCGTGC 61.255 66.667 13.94 4.28 0.00 5.34
2888 2942 4.814294 AATCGAGCGGTCCGTGCC 62.814 66.667 13.94 1.46 0.00 5.01
2923 2977 3.598273 CGAAGGAGGAGAAGGAGGA 57.402 57.895 0.00 0.00 0.00 3.71
2924 2978 1.107945 CGAAGGAGGAGAAGGAGGAC 58.892 60.000 0.00 0.00 0.00 3.85
2925 2979 1.617263 CGAAGGAGGAGAAGGAGGACA 60.617 57.143 0.00 0.00 0.00 4.02
2926 2980 2.107366 GAAGGAGGAGAAGGAGGACAG 58.893 57.143 0.00 0.00 0.00 3.51
2927 2981 0.325203 AGGAGGAGAAGGAGGACAGC 60.325 60.000 0.00 0.00 0.00 4.40
2928 2982 1.671901 GGAGGAGAAGGAGGACAGCG 61.672 65.000 0.00 0.00 0.00 5.18
2929 2983 0.681564 GAGGAGAAGGAGGACAGCGA 60.682 60.000 0.00 0.00 0.00 4.93
2930 2984 0.968393 AGGAGAAGGAGGACAGCGAC 60.968 60.000 0.00 0.00 0.00 5.19
2931 2985 0.968393 GGAGAAGGAGGACAGCGACT 60.968 60.000 0.00 0.00 0.00 4.18
2932 2986 0.172352 GAGAAGGAGGACAGCGACTG 59.828 60.000 5.47 5.47 37.52 3.51
2933 2987 1.446966 GAAGGAGGACAGCGACTGC 60.447 63.158 6.74 1.24 43.24 4.40
2944 2998 4.803426 CGACTGCGGGGACAGCTC 62.803 72.222 0.00 0.00 41.60 4.09
2945 2999 3.386237 GACTGCGGGGACAGCTCT 61.386 66.667 0.00 0.00 41.60 4.09
2946 3000 3.655810 GACTGCGGGGACAGCTCTG 62.656 68.421 0.00 0.00 41.60 3.35
2947 3001 4.463879 CTGCGGGGACAGCTCTGG 62.464 72.222 1.66 0.00 35.28 3.86
2953 3007 3.123620 GGACAGCTCTGGCGCAAG 61.124 66.667 10.83 7.94 40.25 4.01
2965 3019 3.407657 CGCAAGCAGATCCAGCTC 58.592 61.111 10.35 0.00 42.53 4.09
2966 3020 2.523507 CGCAAGCAGATCCAGCTCG 61.524 63.158 10.35 7.41 42.53 5.03
2967 3021 1.153489 GCAAGCAGATCCAGCTCGA 60.153 57.895 10.35 0.00 42.53 4.04
2968 3022 0.532417 GCAAGCAGATCCAGCTCGAT 60.532 55.000 10.35 0.00 42.53 3.59
2969 3023 1.500108 CAAGCAGATCCAGCTCGATC 58.500 55.000 12.93 12.93 42.53 3.69
2970 3024 0.392336 AAGCAGATCCAGCTCGATCC 59.608 55.000 16.62 3.91 42.53 3.36
2971 3025 0.758310 AGCAGATCCAGCTCGATCCA 60.758 55.000 16.62 0.00 39.67 3.41
2972 3026 0.321021 GCAGATCCAGCTCGATCCAT 59.679 55.000 16.62 0.00 39.67 3.41
2973 3027 1.547820 GCAGATCCAGCTCGATCCATA 59.452 52.381 16.62 0.00 39.67 2.74
2974 3028 2.673610 GCAGATCCAGCTCGATCCATAC 60.674 54.545 16.62 1.97 39.67 2.39
2975 3029 2.094286 CAGATCCAGCTCGATCCATACC 60.094 54.545 16.62 0.00 39.67 2.73
2976 3030 0.891373 ATCCAGCTCGATCCATACCG 59.109 55.000 0.00 0.00 0.00 4.02
2977 3031 1.373497 CCAGCTCGATCCATACCGC 60.373 63.158 0.00 0.00 0.00 5.68
2978 3032 1.730902 CAGCTCGATCCATACCGCG 60.731 63.158 0.00 0.00 0.00 6.46
2979 3033 2.194212 AGCTCGATCCATACCGCGT 61.194 57.895 4.92 0.00 0.00 6.01
2980 3034 1.299926 GCTCGATCCATACCGCGTT 60.300 57.895 4.92 0.00 0.00 4.84
2981 3035 0.874607 GCTCGATCCATACCGCGTTT 60.875 55.000 4.92 0.00 0.00 3.60
2982 3036 1.567504 CTCGATCCATACCGCGTTTT 58.432 50.000 4.92 0.00 0.00 2.43
2983 3037 1.521423 CTCGATCCATACCGCGTTTTC 59.479 52.381 4.92 0.00 0.00 2.29
3008 3062 3.604875 GGTAATTCCGTGAGAAGGACA 57.395 47.619 0.00 0.00 38.07 4.02
3009 3063 3.934068 GGTAATTCCGTGAGAAGGACAA 58.066 45.455 0.00 0.00 38.07 3.18
3010 3064 3.683340 GGTAATTCCGTGAGAAGGACAAC 59.317 47.826 0.00 0.00 38.07 3.32
3011 3065 3.485463 AATTCCGTGAGAAGGACAACA 57.515 42.857 0.00 0.00 38.07 3.33
3012 3066 2.992124 TTCCGTGAGAAGGACAACAA 57.008 45.000 0.00 0.00 37.53 2.83
3013 3067 2.526304 TCCGTGAGAAGGACAACAAG 57.474 50.000 0.00 0.00 31.86 3.16
3014 3068 1.070134 TCCGTGAGAAGGACAACAAGG 59.930 52.381 0.00 0.00 31.86 3.61
3015 3069 1.512926 CGTGAGAAGGACAACAAGGG 58.487 55.000 0.00 0.00 0.00 3.95
3016 3070 1.239347 GTGAGAAGGACAACAAGGGC 58.761 55.000 0.00 0.00 0.00 5.19
3017 3071 0.250295 TGAGAAGGACAACAAGGGCG 60.250 55.000 0.00 0.00 0.00 6.13
3018 3072 1.578206 GAGAAGGACAACAAGGGCGC 61.578 60.000 0.00 0.00 0.00 6.53
3019 3073 2.597510 AAGGACAACAAGGGCGCC 60.598 61.111 21.18 21.18 0.00 6.53
3032 3086 4.388499 GCGCCGGGAAGGACAAGA 62.388 66.667 2.18 0.00 45.00 3.02
3033 3087 2.125512 CGCCGGGAAGGACAAGAG 60.126 66.667 2.18 0.00 45.00 2.85
3034 3088 2.436824 GCCGGGAAGGACAAGAGC 60.437 66.667 2.18 0.00 45.00 4.09
3035 3089 3.068881 CCGGGAAGGACAAGAGCA 58.931 61.111 0.00 0.00 45.00 4.26
3036 3090 1.078848 CCGGGAAGGACAAGAGCAG 60.079 63.158 0.00 0.00 45.00 4.24
3037 3091 1.743252 CGGGAAGGACAAGAGCAGC 60.743 63.158 0.00 0.00 0.00 5.25
3038 3092 1.377856 GGGAAGGACAAGAGCAGCC 60.378 63.158 0.00 0.00 0.00 4.85
3039 3093 1.743252 GGAAGGACAAGAGCAGCCG 60.743 63.158 0.00 0.00 0.00 5.52
3040 3094 1.004440 GAAGGACAAGAGCAGCCGT 60.004 57.895 0.00 0.00 0.00 5.68
3041 3095 1.294659 GAAGGACAAGAGCAGCCGTG 61.295 60.000 0.00 0.00 0.00 4.94
3042 3096 2.738213 AAGGACAAGAGCAGCCGTGG 62.738 60.000 0.00 0.00 0.00 4.94
3043 3097 2.343758 GACAAGAGCAGCCGTGGA 59.656 61.111 0.00 0.00 0.00 4.02
3044 3098 1.078848 GACAAGAGCAGCCGTGGAT 60.079 57.895 0.00 0.00 0.00 3.41
3045 3099 1.364626 GACAAGAGCAGCCGTGGATG 61.365 60.000 0.00 0.00 34.24 3.51
3046 3100 2.110967 CAAGAGCAGCCGTGGATGG 61.111 63.158 6.25 0.00 31.39 3.51
3047 3101 2.596851 AAGAGCAGCCGTGGATGGT 61.597 57.895 8.81 8.81 45.16 3.55
3049 3103 3.005539 AGCAGCCGTGGATGGTCT 61.006 61.111 2.51 0.00 37.75 3.85
3050 3104 2.512515 GCAGCCGTGGATGGTCTC 60.513 66.667 6.25 0.00 31.39 3.36
3051 3105 2.187946 CAGCCGTGGATGGTCTCC 59.812 66.667 0.00 0.00 45.19 3.71
3065 3119 3.695830 GGTCTCCACCATAGACAAACA 57.304 47.619 5.67 0.00 44.25 2.83
3066 3120 4.222124 GGTCTCCACCATAGACAAACAT 57.778 45.455 5.67 0.00 44.25 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.918583 CCGGAGATTATTTTCTAGCGAGTC 59.081 45.833 0.00 0.00 0.00 3.36
217 229 1.042559 GGGAGGAGCTCTGGTCTCAG 61.043 65.000 14.64 0.00 42.21 3.35
225 237 4.814041 GCCCTGGGGAGGAGCTCT 62.814 72.222 16.03 0.00 37.50 4.09
239 251 3.613030 TGGAAGTAAAATAAGGACGCCC 58.387 45.455 0.00 0.00 0.00 6.13
278 291 2.517402 TCCGGTGTTTGGTGTGGC 60.517 61.111 0.00 0.00 0.00 5.01
301 314 2.131776 AAACTCGGTGGTTTGTTGGA 57.868 45.000 0.00 0.00 37.91 3.53
340 353 1.741706 CATGGCACTGACTGGATGTTC 59.258 52.381 0.00 0.00 0.00 3.18
391 405 5.656859 TCGTGGTACTAGTAGTGGAGTACTA 59.343 44.000 13.29 0.00 44.90 1.82
392 406 4.467795 TCGTGGTACTAGTAGTGGAGTACT 59.532 45.833 13.29 0.00 44.90 2.73
393 407 4.568760 GTCGTGGTACTAGTAGTGGAGTAC 59.431 50.000 13.29 2.46 44.84 2.73
394 408 4.222810 TGTCGTGGTACTAGTAGTGGAGTA 59.777 45.833 13.29 0.00 0.00 2.59
395 409 3.008375 TGTCGTGGTACTAGTAGTGGAGT 59.992 47.826 13.29 0.00 0.00 3.85
396 410 3.603532 TGTCGTGGTACTAGTAGTGGAG 58.396 50.000 13.29 0.68 0.00 3.86
397 411 3.701205 TGTCGTGGTACTAGTAGTGGA 57.299 47.619 13.29 0.00 0.00 4.02
398 412 3.427233 GCTTGTCGTGGTACTAGTAGTGG 60.427 52.174 13.29 0.00 0.00 4.00
399 413 3.189910 TGCTTGTCGTGGTACTAGTAGTG 59.810 47.826 13.29 0.00 0.00 2.74
400 414 3.415212 TGCTTGTCGTGGTACTAGTAGT 58.585 45.455 8.14 8.14 0.00 2.73
401 415 3.439476 ACTGCTTGTCGTGGTACTAGTAG 59.561 47.826 1.87 0.00 39.51 2.57
402 416 3.415212 ACTGCTTGTCGTGGTACTAGTA 58.585 45.455 0.00 0.00 0.00 1.82
403 417 2.236766 ACTGCTTGTCGTGGTACTAGT 58.763 47.619 0.00 0.00 0.00 2.57
404 418 4.430137 TTACTGCTTGTCGTGGTACTAG 57.570 45.455 0.00 0.00 0.00 2.57
434 448 3.220658 CCACGGGCGTTGGGTTTT 61.221 61.111 0.00 0.00 0.00 2.43
555 569 2.094752 GCATAGAGCTAGCTAGAGTGGC 60.095 54.545 25.15 12.98 41.15 5.01
573 593 2.187946 GGAGGTACTGCTGCGCAT 59.812 61.111 12.24 0.00 45.87 4.73
638 658 0.765510 GGTGGAGAGTGGACTGGTTT 59.234 55.000 0.00 0.00 0.00 3.27
666 687 1.136891 GCCAAGACAAAAGCTGTGGTT 59.863 47.619 0.00 0.00 38.84 3.67
667 688 0.746659 GCCAAGACAAAAGCTGTGGT 59.253 50.000 0.00 0.00 38.84 4.16
699 720 1.228124 AGTGGTAAAAGCAGCGGCA 60.228 52.632 12.44 0.00 44.61 5.69
700 721 1.502190 GAGTGGTAAAAGCAGCGGC 59.498 57.895 0.00 0.00 41.61 6.53
701 722 1.305930 GGGAGTGGTAAAAGCAGCGG 61.306 60.000 0.00 0.00 0.00 5.52
891 913 3.054065 GGCTGGGATCCCATAAATAGAGG 60.054 52.174 33.89 19.07 46.15 3.69
919 941 1.228862 GGTGGGGATGTGCTTTGGT 60.229 57.895 0.00 0.00 0.00 3.67
1228 1256 0.672711 GAGGGACGGTGTTTACTGCC 60.673 60.000 0.00 0.00 36.62 4.85
1244 1272 6.341316 ACAGTACTAATACAATGCTGTGAGG 58.659 40.000 0.00 0.00 36.96 3.86
1259 1287 5.865085 AGATGCACCAAGAAACAGTACTAA 58.135 37.500 0.00 0.00 0.00 2.24
2075 2104 2.247437 GCTTCGGCGGATGGATGAC 61.247 63.158 7.21 0.00 0.00 3.06
2127 2156 1.246056 ATCGGGAGGTTGACGACGAA 61.246 55.000 0.00 0.00 39.64 3.85
2217 2247 3.181474 CCTAACTACCTGCTACTGCTTCC 60.181 52.174 0.00 0.00 40.48 3.46
2223 2253 2.850695 AGGCCTAACTACCTGCTACT 57.149 50.000 1.29 0.00 34.07 2.57
2278 2308 1.730902 CCACTCACTCACTCACGCG 60.731 63.158 3.53 3.53 0.00 6.01
2357 2387 1.347221 GCGTCGGTTAATCAAGCCG 59.653 57.895 0.00 0.00 46.12 5.52
2456 2487 1.935873 CACACACCACACAGACAGAAG 59.064 52.381 0.00 0.00 0.00 2.85
2457 2488 1.277842 ACACACACCACACAGACAGAA 59.722 47.619 0.00 0.00 0.00 3.02
2458 2489 0.901827 ACACACACCACACAGACAGA 59.098 50.000 0.00 0.00 0.00 3.41
2459 2490 1.009078 CACACACACCACACAGACAG 58.991 55.000 0.00 0.00 0.00 3.51
2460 2491 1.024046 GCACACACACCACACAGACA 61.024 55.000 0.00 0.00 0.00 3.41
2461 2492 0.744414 AGCACACACACCACACAGAC 60.744 55.000 0.00 0.00 0.00 3.51
2545 2576 4.263816 ACAAGTACTAGCACTCAGTAGGGA 60.264 45.833 0.00 0.00 0.00 4.20
2556 2587 4.253685 GCAAGATTGGACAAGTACTAGCA 58.746 43.478 0.00 0.00 0.00 3.49
2557 2588 4.253685 TGCAAGATTGGACAAGTACTAGC 58.746 43.478 0.00 0.00 0.00 3.42
2563 2617 7.014615 AGAGTAAATTTGCAAGATTGGACAAGT 59.985 33.333 9.04 0.00 0.00 3.16
2568 2622 5.477984 AGCAGAGTAAATTTGCAAGATTGGA 59.522 36.000 9.04 0.00 40.22 3.53
2571 2625 5.047519 AGCAGCAGAGTAAATTTGCAAGATT 60.048 36.000 9.04 1.52 40.22 2.40
2581 2635 4.277515 TGAAGACAGCAGCAGAGTAAAT 57.722 40.909 0.00 0.00 0.00 1.40
2588 2642 0.788995 CGAGTTGAAGACAGCAGCAG 59.211 55.000 0.00 0.00 0.00 4.24
2589 2643 0.104855 ACGAGTTGAAGACAGCAGCA 59.895 50.000 0.00 0.00 0.00 4.41
2590 2644 2.065993 TACGAGTTGAAGACAGCAGC 57.934 50.000 0.00 0.00 0.00 5.25
2608 2662 3.751175 CCGTCTGAAGGTTTGCTCATTTA 59.249 43.478 1.08 0.00 0.00 1.40
2617 2671 2.158813 TCTGCTTTCCGTCTGAAGGTTT 60.159 45.455 9.46 0.00 32.84 3.27
2621 2675 3.999663 AGAAATCTGCTTTCCGTCTGAAG 59.000 43.478 0.69 0.00 43.66 3.02
2626 2680 5.149977 CAGAAAAGAAATCTGCTTTCCGTC 58.850 41.667 0.69 0.00 43.66 4.79
2632 2686 4.389374 TCGACCAGAAAAGAAATCTGCTT 58.611 39.130 0.00 0.00 42.36 3.91
2633 2687 4.008074 TCGACCAGAAAAGAAATCTGCT 57.992 40.909 0.00 0.00 42.36 4.24
2640 2694 4.133820 TGCAGAAATCGACCAGAAAAGAA 58.866 39.130 0.00 0.00 0.00 2.52
2641 2695 3.738982 TGCAGAAATCGACCAGAAAAGA 58.261 40.909 0.00 0.00 0.00 2.52
2665 2719 2.125512 CTCTCTTTCCCACGGCGG 60.126 66.667 13.24 0.00 0.00 6.13
2666 2720 2.125512 CCTCTCTTTCCCACGGCG 60.126 66.667 4.80 4.80 0.00 6.46
2667 2721 1.262640 TACCCTCTCTTTCCCACGGC 61.263 60.000 0.00 0.00 0.00 5.68
2668 2722 1.207329 CTTACCCTCTCTTTCCCACGG 59.793 57.143 0.00 0.00 0.00 4.94
2669 2723 1.207329 CCTTACCCTCTCTTTCCCACG 59.793 57.143 0.00 0.00 0.00 4.94
2670 2724 1.560146 CCCTTACCCTCTCTTTCCCAC 59.440 57.143 0.00 0.00 0.00 4.61
2671 2725 1.153565 ACCCTTACCCTCTCTTTCCCA 59.846 52.381 0.00 0.00 0.00 4.37
2672 2726 1.838715 GACCCTTACCCTCTCTTTCCC 59.161 57.143 0.00 0.00 0.00 3.97
2673 2727 1.481363 CGACCCTTACCCTCTCTTTCC 59.519 57.143 0.00 0.00 0.00 3.13
2674 2728 1.481363 CCGACCCTTACCCTCTCTTTC 59.519 57.143 0.00 0.00 0.00 2.62
2675 2729 1.569653 CCGACCCTTACCCTCTCTTT 58.430 55.000 0.00 0.00 0.00 2.52
2676 2730 0.325390 CCCGACCCTTACCCTCTCTT 60.325 60.000 0.00 0.00 0.00 2.85
2677 2731 1.310373 CCCGACCCTTACCCTCTCT 59.690 63.158 0.00 0.00 0.00 3.10
2678 2732 2.433146 GCCCGACCCTTACCCTCTC 61.433 68.421 0.00 0.00 0.00 3.20
2679 2733 2.365237 GCCCGACCCTTACCCTCT 60.365 66.667 0.00 0.00 0.00 3.69
2680 2734 2.686106 TGCCCGACCCTTACCCTC 60.686 66.667 0.00 0.00 0.00 4.30
2681 2735 2.687566 CTGCCCGACCCTTACCCT 60.688 66.667 0.00 0.00 0.00 4.34
2682 2736 4.484872 GCTGCCCGACCCTTACCC 62.485 72.222 0.00 0.00 0.00 3.69
2683 2737 4.484872 GGCTGCCCGACCCTTACC 62.485 72.222 7.66 0.00 0.00 2.85
2684 2738 4.484872 GGGCTGCCCGACCCTTAC 62.485 72.222 24.16 0.00 43.36 2.34
2700 2754 2.125512 CTCTCTTTCCCACGGCGG 60.126 66.667 13.24 0.00 0.00 6.13
2701 2755 2.125512 CCTCTCTTTCCCACGGCG 60.126 66.667 4.80 4.80 0.00 6.46
2702 2756 1.262640 TACCCTCTCTTTCCCACGGC 61.263 60.000 0.00 0.00 0.00 5.68
2703 2757 1.207329 CTTACCCTCTCTTTCCCACGG 59.793 57.143 0.00 0.00 0.00 4.94
2704 2758 1.207329 CCTTACCCTCTCTTTCCCACG 59.793 57.143 0.00 0.00 0.00 4.94
2705 2759 1.560146 CCCTTACCCTCTCTTTCCCAC 59.440 57.143 0.00 0.00 0.00 4.61
2706 2760 1.153565 ACCCTTACCCTCTCTTTCCCA 59.846 52.381 0.00 0.00 0.00 4.37
2707 2761 1.838715 GACCCTTACCCTCTCTTTCCC 59.161 57.143 0.00 0.00 0.00 3.97
2708 2762 1.481363 CGACCCTTACCCTCTCTTTCC 59.519 57.143 0.00 0.00 0.00 3.13
2709 2763 1.134759 GCGACCCTTACCCTCTCTTTC 60.135 57.143 0.00 0.00 0.00 2.62
2710 2764 0.903236 GCGACCCTTACCCTCTCTTT 59.097 55.000 0.00 0.00 0.00 2.52
2711 2765 0.976590 GGCGACCCTTACCCTCTCTT 60.977 60.000 0.00 0.00 0.00 2.85
2712 2766 1.381463 GGCGACCCTTACCCTCTCT 60.381 63.158 0.00 0.00 0.00 3.10
2713 2767 1.684734 TGGCGACCCTTACCCTCTC 60.685 63.158 0.00 0.00 0.00 3.20
2714 2768 1.988406 GTGGCGACCCTTACCCTCT 60.988 63.158 0.00 0.00 0.00 3.69
2715 2769 2.582978 GTGGCGACCCTTACCCTC 59.417 66.667 0.00 0.00 0.00 4.30
2716 2770 3.387947 CGTGGCGACCCTTACCCT 61.388 66.667 0.00 0.00 0.00 4.34
2736 2790 2.544359 CATTTCCGCCGCGATACG 59.456 61.111 15.93 8.61 43.15 3.06
2737 2791 2.935955 CCATTTCCGCCGCGATAC 59.064 61.111 15.93 0.00 0.00 2.24
2738 2792 2.970324 GCCATTTCCGCCGCGATA 60.970 61.111 15.93 0.00 0.00 2.92
2744 2798 3.211963 ATCGCTGCCATTTCCGCC 61.212 61.111 0.00 0.00 0.00 6.13
2745 2799 2.025156 CATCGCTGCCATTTCCGC 59.975 61.111 0.00 0.00 0.00 5.54
2746 2800 1.168407 ATCCATCGCTGCCATTTCCG 61.168 55.000 0.00 0.00 0.00 4.30
2747 2801 0.313043 CATCCATCGCTGCCATTTCC 59.687 55.000 0.00 0.00 0.00 3.13
2748 2802 0.318445 GCATCCATCGCTGCCATTTC 60.318 55.000 0.00 0.00 32.15 2.17
2749 2803 1.737816 GCATCCATCGCTGCCATTT 59.262 52.632 0.00 0.00 32.15 2.32
2750 2804 2.549198 CGCATCCATCGCTGCCATT 61.549 57.895 0.00 0.00 34.89 3.16
2751 2805 2.976350 CGCATCCATCGCTGCCAT 60.976 61.111 0.00 0.00 34.89 4.40
2755 2809 0.952497 ATTAGCCGCATCCATCGCTG 60.952 55.000 0.00 0.00 0.00 5.18
2756 2810 0.952497 CATTAGCCGCATCCATCGCT 60.952 55.000 0.00 0.00 0.00 4.93
2757 2811 1.499056 CATTAGCCGCATCCATCGC 59.501 57.895 0.00 0.00 0.00 4.58
2758 2812 1.499056 GCATTAGCCGCATCCATCG 59.501 57.895 0.00 0.00 33.58 3.84
2759 2813 1.499056 CGCATTAGCCGCATCCATC 59.501 57.895 0.00 0.00 37.52 3.51
2760 2814 1.968017 CCGCATTAGCCGCATCCAT 60.968 57.895 0.00 0.00 37.52 3.41
2761 2815 2.591429 CCGCATTAGCCGCATCCA 60.591 61.111 0.00 0.00 37.52 3.41
2762 2816 4.030452 GCCGCATTAGCCGCATCC 62.030 66.667 0.00 0.00 43.22 3.51
2763 2817 4.374702 CGCCGCATTAGCCGCATC 62.375 66.667 0.00 0.00 43.79 3.91
2787 2841 4.760047 TTTCTCCTCTGCGGCCGC 62.760 66.667 42.35 42.35 42.35 6.53
2788 2842 2.510238 CTTTCTCCTCTGCGGCCG 60.510 66.667 24.05 24.05 0.00 6.13
2789 2843 1.448717 GTCTTTCTCCTCTGCGGCC 60.449 63.158 0.00 0.00 0.00 6.13
2790 2844 0.107945 ATGTCTTTCTCCTCTGCGGC 60.108 55.000 0.00 0.00 0.00 6.53
2791 2845 1.649664 CATGTCTTTCTCCTCTGCGG 58.350 55.000 0.00 0.00 0.00 5.69
2792 2846 1.005340 GCATGTCTTTCTCCTCTGCG 58.995 55.000 0.00 0.00 0.00 5.18
2793 2847 1.005340 CGCATGTCTTTCTCCTCTGC 58.995 55.000 0.00 0.00 0.00 4.26
2794 2848 1.005340 GCGCATGTCTTTCTCCTCTG 58.995 55.000 0.30 0.00 0.00 3.35
2795 2849 0.610174 TGCGCATGTCTTTCTCCTCT 59.390 50.000 5.66 0.00 0.00 3.69
2796 2850 0.723981 GTGCGCATGTCTTTCTCCTC 59.276 55.000 15.91 0.00 0.00 3.71
2797 2851 0.674895 GGTGCGCATGTCTTTCTCCT 60.675 55.000 15.91 0.00 0.00 3.69
2798 2852 1.648467 GGGTGCGCATGTCTTTCTCC 61.648 60.000 15.91 6.33 0.00 3.71
2799 2853 0.955428 TGGGTGCGCATGTCTTTCTC 60.955 55.000 15.91 0.00 0.00 2.87
2800 2854 1.073025 TGGGTGCGCATGTCTTTCT 59.927 52.632 15.91 0.00 0.00 2.52
2801 2855 1.210155 GTGGGTGCGCATGTCTTTC 59.790 57.895 15.91 0.00 0.00 2.62
2802 2856 0.895100 ATGTGGGTGCGCATGTCTTT 60.895 50.000 15.91 0.00 0.00 2.52
2803 2857 0.895100 AATGTGGGTGCGCATGTCTT 60.895 50.000 15.91 0.00 0.00 3.01
2804 2858 1.303561 AATGTGGGTGCGCATGTCT 60.304 52.632 15.91 0.00 0.00 3.41
2805 2859 1.153978 CAATGTGGGTGCGCATGTC 60.154 57.895 15.91 7.03 0.00 3.06
2806 2860 1.902918 ACAATGTGGGTGCGCATGT 60.903 52.632 15.91 9.39 0.00 3.21
2807 2861 1.444724 CACAATGTGGGTGCGCATG 60.445 57.895 15.91 8.60 0.00 4.06
2808 2862 1.177895 TTCACAATGTGGGTGCGCAT 61.178 50.000 15.91 0.00 36.22 4.73
2809 2863 1.794151 CTTCACAATGTGGGTGCGCA 61.794 55.000 13.95 5.66 36.22 6.09
2810 2864 1.081242 CTTCACAATGTGGGTGCGC 60.081 57.895 13.95 0.00 36.22 6.09
2811 2865 0.950836 TTCTTCACAATGTGGGTGCG 59.049 50.000 13.95 0.00 36.22 5.34
2812 2866 2.742774 GTTTCTTCACAATGTGGGTGC 58.257 47.619 13.95 0.00 36.22 5.01
2813 2867 2.287547 CCGTTTCTTCACAATGTGGGTG 60.288 50.000 13.95 4.41 37.60 4.61
2814 2868 1.953686 CCGTTTCTTCACAATGTGGGT 59.046 47.619 13.95 0.00 33.87 4.51
2815 2869 2.226330 TCCGTTTCTTCACAATGTGGG 58.774 47.619 13.95 4.95 33.87 4.61
2816 2870 3.853307 GCTTCCGTTTCTTCACAATGTGG 60.853 47.826 13.95 0.00 33.87 4.17
2817 2871 3.243035 TGCTTCCGTTTCTTCACAATGTG 60.243 43.478 7.12 7.12 34.45 3.21
2818 2872 2.948979 TGCTTCCGTTTCTTCACAATGT 59.051 40.909 0.00 0.00 0.00 2.71
2819 2873 3.250762 TCTGCTTCCGTTTCTTCACAATG 59.749 43.478 0.00 0.00 0.00 2.82
2820 2874 3.476552 TCTGCTTCCGTTTCTTCACAAT 58.523 40.909 0.00 0.00 0.00 2.71
2821 2875 2.872245 CTCTGCTTCCGTTTCTTCACAA 59.128 45.455 0.00 0.00 0.00 3.33
2822 2876 2.483876 CTCTGCTTCCGTTTCTTCACA 58.516 47.619 0.00 0.00 0.00 3.58
2823 2877 1.801178 CCTCTGCTTCCGTTTCTTCAC 59.199 52.381 0.00 0.00 0.00 3.18
2824 2878 1.691976 TCCTCTGCTTCCGTTTCTTCA 59.308 47.619 0.00 0.00 0.00 3.02
2825 2879 2.457366 TCCTCTGCTTCCGTTTCTTC 57.543 50.000 0.00 0.00 0.00 2.87
2826 2880 2.158813 TGTTCCTCTGCTTCCGTTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
2827 2881 1.416401 TGTTCCTCTGCTTCCGTTTCT 59.584 47.619 0.00 0.00 0.00 2.52
2828 2882 1.531578 GTGTTCCTCTGCTTCCGTTTC 59.468 52.381 0.00 0.00 0.00 2.78
2829 2883 1.594331 GTGTTCCTCTGCTTCCGTTT 58.406 50.000 0.00 0.00 0.00 3.60
2830 2884 0.600255 CGTGTTCCTCTGCTTCCGTT 60.600 55.000 0.00 0.00 0.00 4.44
2831 2885 1.006102 CGTGTTCCTCTGCTTCCGT 60.006 57.895 0.00 0.00 0.00 4.69
2832 2886 2.383527 GCGTGTTCCTCTGCTTCCG 61.384 63.158 0.00 0.00 0.00 4.30
2833 2887 0.674895 ATGCGTGTTCCTCTGCTTCC 60.675 55.000 0.00 0.00 0.00 3.46
2834 2888 0.445436 CATGCGTGTTCCTCTGCTTC 59.555 55.000 0.00 0.00 0.00 3.86
2835 2889 1.580845 GCATGCGTGTTCCTCTGCTT 61.581 55.000 0.00 0.00 0.00 3.91
2836 2890 2.037136 GCATGCGTGTTCCTCTGCT 61.037 57.895 0.00 0.00 0.00 4.24
2837 2891 2.482374 GCATGCGTGTTCCTCTGC 59.518 61.111 0.00 0.00 0.00 4.26
2838 2892 2.401766 GGGCATGCGTGTTCCTCTG 61.402 63.158 12.44 0.00 0.00 3.35
2839 2893 2.045926 GGGCATGCGTGTTCCTCT 60.046 61.111 12.44 0.00 0.00 3.69
2840 2894 2.045926 AGGGCATGCGTGTTCCTC 60.046 61.111 12.44 0.00 0.00 3.71
2841 2895 2.045926 GAGGGCATGCGTGTTCCT 60.046 61.111 18.57 18.57 35.09 3.36
2842 2896 3.499737 CGAGGGCATGCGTGTTCC 61.500 66.667 12.44 6.72 0.00 3.62
2843 2897 4.166011 GCGAGGGCATGCGTGTTC 62.166 66.667 12.44 5.52 39.62 3.18
2854 2908 1.684386 ATTCTGCTCTCAGGCGAGGG 61.684 60.000 6.53 4.56 43.31 4.30
2855 2909 0.249405 GATTCTGCTCTCAGGCGAGG 60.249 60.000 6.53 0.51 40.69 4.63
2856 2910 0.594540 CGATTCTGCTCTCAGGCGAG 60.595 60.000 0.00 0.77 40.69 5.03
2857 2911 1.032114 TCGATTCTGCTCTCAGGCGA 61.032 55.000 0.00 0.00 40.69 5.54
2858 2912 0.594540 CTCGATTCTGCTCTCAGGCG 60.595 60.000 0.00 0.00 40.69 5.52
2859 2913 0.875474 GCTCGATTCTGCTCTCAGGC 60.875 60.000 0.00 0.00 40.69 4.85
2860 2914 0.594540 CGCTCGATTCTGCTCTCAGG 60.595 60.000 0.00 0.00 40.69 3.86
2861 2915 0.594540 CCGCTCGATTCTGCTCTCAG 60.595 60.000 0.00 0.00 41.67 3.35
2862 2916 1.315981 ACCGCTCGATTCTGCTCTCA 61.316 55.000 0.00 0.00 0.00 3.27
2863 2917 0.593773 GACCGCTCGATTCTGCTCTC 60.594 60.000 0.00 0.00 0.00 3.20
2864 2918 1.435515 GACCGCTCGATTCTGCTCT 59.564 57.895 0.00 0.00 0.00 4.09
2865 2919 1.590259 GGACCGCTCGATTCTGCTC 60.590 63.158 0.00 0.00 0.00 4.26
2866 2920 2.496817 GGACCGCTCGATTCTGCT 59.503 61.111 0.00 0.00 0.00 4.24
2867 2921 2.956964 CGGACCGCTCGATTCTGC 60.957 66.667 0.00 0.00 0.00 4.26
2868 2922 1.874019 CACGGACCGCTCGATTCTG 60.874 63.158 15.39 0.00 0.00 3.02
2869 2923 2.490217 CACGGACCGCTCGATTCT 59.510 61.111 15.39 0.00 0.00 2.40
2870 2924 3.255379 GCACGGACCGCTCGATTC 61.255 66.667 15.39 0.00 0.00 2.52
2871 2925 4.814294 GGCACGGACCGCTCGATT 62.814 66.667 15.39 0.00 0.00 3.34
2893 2947 4.760047 CCTTCGGTGGCAGTCCGG 62.760 72.222 15.49 0.00 46.82 5.14
2895 2949 2.266055 CTCCTTCGGTGGCAGTCC 59.734 66.667 0.00 0.00 0.00 3.85
2896 2950 2.232298 CTCCTCCTTCGGTGGCAGTC 62.232 65.000 0.00 0.00 36.40 3.51
2897 2951 2.203788 TCCTCCTTCGGTGGCAGT 60.204 61.111 0.00 0.00 36.40 4.40
2898 2952 1.544825 TTCTCCTCCTTCGGTGGCAG 61.545 60.000 0.00 0.00 36.40 4.85
2899 2953 1.535444 TTCTCCTCCTTCGGTGGCA 60.535 57.895 0.00 0.00 36.40 4.92
2900 2954 1.219393 CTTCTCCTCCTTCGGTGGC 59.781 63.158 0.00 0.00 36.40 5.01
2901 2955 0.614979 TCCTTCTCCTCCTTCGGTGG 60.615 60.000 0.00 0.00 37.67 4.61
2902 2956 0.820871 CTCCTTCTCCTCCTTCGGTG 59.179 60.000 0.00 0.00 0.00 4.94
2903 2957 0.324830 CCTCCTTCTCCTCCTTCGGT 60.325 60.000 0.00 0.00 0.00 4.69
2904 2958 0.033011 TCCTCCTTCTCCTCCTTCGG 60.033 60.000 0.00 0.00 0.00 4.30
2905 2959 1.107945 GTCCTCCTTCTCCTCCTTCG 58.892 60.000 0.00 0.00 0.00 3.79
2906 2960 2.107366 CTGTCCTCCTTCTCCTCCTTC 58.893 57.143 0.00 0.00 0.00 3.46
2907 2961 1.899438 GCTGTCCTCCTTCTCCTCCTT 60.899 57.143 0.00 0.00 0.00 3.36
2908 2962 0.325203 GCTGTCCTCCTTCTCCTCCT 60.325 60.000 0.00 0.00 0.00 3.69
2909 2963 1.671901 CGCTGTCCTCCTTCTCCTCC 61.672 65.000 0.00 0.00 0.00 4.30
2910 2964 0.681564 TCGCTGTCCTCCTTCTCCTC 60.682 60.000 0.00 0.00 0.00 3.71
2911 2965 0.968393 GTCGCTGTCCTCCTTCTCCT 60.968 60.000 0.00 0.00 0.00 3.69
2912 2966 0.968393 AGTCGCTGTCCTCCTTCTCC 60.968 60.000 0.00 0.00 0.00 3.71
2913 2967 0.172352 CAGTCGCTGTCCTCCTTCTC 59.828 60.000 0.00 0.00 0.00 2.87
2914 2968 1.882989 GCAGTCGCTGTCCTCCTTCT 61.883 60.000 8.32 0.00 33.43 2.85
2915 2969 1.446966 GCAGTCGCTGTCCTCCTTC 60.447 63.158 8.32 0.00 33.43 3.46
2916 2970 2.659610 GCAGTCGCTGTCCTCCTT 59.340 61.111 8.32 0.00 33.43 3.36
2917 2971 3.753434 CGCAGTCGCTGTCCTCCT 61.753 66.667 8.32 0.00 35.30 3.69
2918 2972 4.803426 CCGCAGTCGCTGTCCTCC 62.803 72.222 8.32 0.00 35.30 4.30
2919 2973 4.803426 CCCGCAGTCGCTGTCCTC 62.803 72.222 8.32 0.00 35.30 3.71
2927 2981 4.803426 GAGCTGTCCCCGCAGTCG 62.803 72.222 0.00 0.00 38.65 4.18
2928 2982 3.386237 AGAGCTGTCCCCGCAGTC 61.386 66.667 0.00 0.00 38.65 3.51
2929 2983 3.699894 CAGAGCTGTCCCCGCAGT 61.700 66.667 0.00 0.00 38.65 4.40
2930 2984 4.463879 CCAGAGCTGTCCCCGCAG 62.464 72.222 0.00 0.00 39.37 5.18
2935 2989 4.704833 TTGCGCCAGAGCTGTCCC 62.705 66.667 4.18 0.00 38.13 4.46
2936 2990 3.123620 CTTGCGCCAGAGCTGTCC 61.124 66.667 4.18 0.00 38.13 4.02
2937 2991 3.797546 GCTTGCGCCAGAGCTGTC 61.798 66.667 13.50 0.00 38.13 3.51
2938 2992 4.631247 TGCTTGCGCCAGAGCTGT 62.631 61.111 22.44 0.00 39.60 4.40
2939 2993 3.800863 CTGCTTGCGCCAGAGCTG 61.801 66.667 22.44 19.12 39.60 4.24
2940 2994 3.326646 ATCTGCTTGCGCCAGAGCT 62.327 57.895 22.44 5.93 39.60 4.09
2941 2995 2.821688 GATCTGCTTGCGCCAGAGC 61.822 63.158 13.50 13.37 39.33 4.09
2942 2996 2.178890 GGATCTGCTTGCGCCAGAG 61.179 63.158 13.50 7.10 34.43 3.35
2943 2997 2.124983 GGATCTGCTTGCGCCAGA 60.125 61.111 13.50 14.75 34.43 3.86
2944 2998 2.437180 TGGATCTGCTTGCGCCAG 60.437 61.111 4.18 3.91 34.43 4.85
2945 2999 2.437180 CTGGATCTGCTTGCGCCA 60.437 61.111 4.18 0.00 34.43 5.69
2946 3000 3.885521 GCTGGATCTGCTTGCGCC 61.886 66.667 4.18 0.00 34.43 6.53
2947 3001 2.821688 GAGCTGGATCTGCTTGCGC 61.822 63.158 0.00 0.00 38.70 6.09
2948 3002 2.523507 CGAGCTGGATCTGCTTGCG 61.524 63.158 13.31 10.16 38.70 4.85
2949 3003 0.532417 ATCGAGCTGGATCTGCTTGC 60.532 55.000 17.78 6.71 38.70 4.01
2950 3004 1.500108 GATCGAGCTGGATCTGCTTG 58.500 55.000 26.26 16.97 38.70 4.01
2951 3005 0.392336 GGATCGAGCTGGATCTGCTT 59.608 55.000 30.24 2.94 41.99 3.91
2952 3006 0.758310 TGGATCGAGCTGGATCTGCT 60.758 55.000 30.24 12.26 41.99 4.24
2953 3007 0.321021 ATGGATCGAGCTGGATCTGC 59.679 55.000 30.24 19.03 41.99 4.26
2954 3008 2.094286 GGTATGGATCGAGCTGGATCTG 60.094 54.545 30.24 0.00 41.99 2.90
2955 3009 2.175202 GGTATGGATCGAGCTGGATCT 58.825 52.381 30.24 18.45 41.99 2.75
2956 3010 1.135257 CGGTATGGATCGAGCTGGATC 60.135 57.143 25.76 25.76 41.67 3.36
2957 3011 0.891373 CGGTATGGATCGAGCTGGAT 59.109 55.000 11.42 11.42 0.00 3.41
2958 3012 1.806461 GCGGTATGGATCGAGCTGGA 61.806 60.000 0.00 0.00 0.00 3.86
2959 3013 1.373497 GCGGTATGGATCGAGCTGG 60.373 63.158 0.00 0.00 0.00 4.85
2960 3014 1.730902 CGCGGTATGGATCGAGCTG 60.731 63.158 0.00 0.00 0.00 4.24
2961 3015 1.735376 AACGCGGTATGGATCGAGCT 61.735 55.000 12.47 0.00 0.00 4.09
2962 3016 0.874607 AAACGCGGTATGGATCGAGC 60.875 55.000 12.47 0.00 0.00 5.03
2963 3017 1.521423 GAAAACGCGGTATGGATCGAG 59.479 52.381 12.47 0.00 0.00 4.04
2964 3018 1.563111 GAAAACGCGGTATGGATCGA 58.437 50.000 12.47 0.00 0.00 3.59
2965 3019 0.228742 CGAAAACGCGGTATGGATCG 59.771 55.000 12.47 6.44 0.00 3.69
2966 3020 1.257155 GTCGAAAACGCGGTATGGATC 59.743 52.381 12.47 0.00 0.00 3.36
2967 3021 1.283736 GTCGAAAACGCGGTATGGAT 58.716 50.000 12.47 0.00 0.00 3.41
2968 3022 0.737019 GGTCGAAAACGCGGTATGGA 60.737 55.000 12.47 0.00 0.00 3.41
2969 3023 1.711500 GGTCGAAAACGCGGTATGG 59.289 57.895 12.47 0.00 0.00 2.74
2970 3024 1.342473 CGGTCGAAAACGCGGTATG 59.658 57.895 12.47 0.00 0.00 2.39
2971 3025 1.806758 CCGGTCGAAAACGCGGTAT 60.807 57.895 12.47 0.00 37.11 2.73
2972 3026 1.857318 TACCGGTCGAAAACGCGGTA 61.857 55.000 12.40 13.88 46.43 4.02
2973 3027 4.590522 ACCGGTCGAAAACGCGGT 62.591 61.111 12.47 0.00 44.75 5.68
2974 3028 1.353609 ATTACCGGTCGAAAACGCGG 61.354 55.000 12.40 0.00 43.34 6.46
2975 3029 0.439600 AATTACCGGTCGAAAACGCG 59.560 50.000 12.40 3.53 0.00 6.01
2976 3030 1.201954 GGAATTACCGGTCGAAAACGC 60.202 52.381 12.40 0.00 0.00 4.84
2977 3031 2.793268 GGAATTACCGGTCGAAAACG 57.207 50.000 12.40 0.00 0.00 3.60
2988 3042 3.604875 TGTCCTTCTCACGGAATTACC 57.395 47.619 0.00 0.00 33.01 2.85
2989 3043 4.312443 TGTTGTCCTTCTCACGGAATTAC 58.688 43.478 0.00 0.00 33.01 1.89
2990 3044 4.610605 TGTTGTCCTTCTCACGGAATTA 57.389 40.909 0.00 0.00 33.01 1.40
2991 3045 3.485463 TGTTGTCCTTCTCACGGAATT 57.515 42.857 0.00 0.00 33.01 2.17
2992 3046 3.403038 CTTGTTGTCCTTCTCACGGAAT 58.597 45.455 0.00 0.00 33.01 3.01
2993 3047 2.484770 CCTTGTTGTCCTTCTCACGGAA 60.485 50.000 0.00 0.00 31.13 4.30
2994 3048 1.070134 CCTTGTTGTCCTTCTCACGGA 59.930 52.381 0.00 0.00 0.00 4.69
2995 3049 1.512926 CCTTGTTGTCCTTCTCACGG 58.487 55.000 0.00 0.00 0.00 4.94
2996 3050 1.512926 CCCTTGTTGTCCTTCTCACG 58.487 55.000 0.00 0.00 0.00 4.35
2997 3051 1.239347 GCCCTTGTTGTCCTTCTCAC 58.761 55.000 0.00 0.00 0.00 3.51
2998 3052 0.250295 CGCCCTTGTTGTCCTTCTCA 60.250 55.000 0.00 0.00 0.00 3.27
2999 3053 1.578206 GCGCCCTTGTTGTCCTTCTC 61.578 60.000 0.00 0.00 0.00 2.87
3000 3054 1.600916 GCGCCCTTGTTGTCCTTCT 60.601 57.895 0.00 0.00 0.00 2.85
3001 3055 2.626780 GGCGCCCTTGTTGTCCTTC 61.627 63.158 18.11 0.00 0.00 3.46
3002 3056 2.597510 GGCGCCCTTGTTGTCCTT 60.598 61.111 18.11 0.00 0.00 3.36
3015 3069 4.388499 TCTTGTCCTTCCCGGCGC 62.388 66.667 0.00 0.00 0.00 6.53
3016 3070 2.125512 CTCTTGTCCTTCCCGGCG 60.126 66.667 0.00 0.00 0.00 6.46
3017 3071 2.436824 GCTCTTGTCCTTCCCGGC 60.437 66.667 0.00 0.00 0.00 6.13
3018 3072 1.078848 CTGCTCTTGTCCTTCCCGG 60.079 63.158 0.00 0.00 0.00 5.73
3019 3073 1.743252 GCTGCTCTTGTCCTTCCCG 60.743 63.158 0.00 0.00 0.00 5.14
3020 3074 1.377856 GGCTGCTCTTGTCCTTCCC 60.378 63.158 0.00 0.00 0.00 3.97
3021 3075 1.743252 CGGCTGCTCTTGTCCTTCC 60.743 63.158 0.00 0.00 0.00 3.46
3022 3076 1.004440 ACGGCTGCTCTTGTCCTTC 60.004 57.895 0.00 0.00 0.00 3.46
3023 3077 1.302033 CACGGCTGCTCTTGTCCTT 60.302 57.895 0.00 0.00 0.00 3.36
3024 3078 2.345244 CACGGCTGCTCTTGTCCT 59.655 61.111 0.00 0.00 0.00 3.85
3025 3079 2.527951 ATCCACGGCTGCTCTTGTCC 62.528 60.000 0.00 0.00 0.00 4.02
3026 3080 1.078848 ATCCACGGCTGCTCTTGTC 60.079 57.895 0.00 0.00 0.00 3.18
3027 3081 1.376424 CATCCACGGCTGCTCTTGT 60.376 57.895 0.00 0.00 0.00 3.16
3028 3082 2.110967 CCATCCACGGCTGCTCTTG 61.111 63.158 0.00 0.00 0.00 3.02
3029 3083 2.270205 CCATCCACGGCTGCTCTT 59.730 61.111 0.00 0.00 0.00 2.85
3030 3084 3.005539 ACCATCCACGGCTGCTCT 61.006 61.111 0.00 0.00 0.00 4.09
3031 3085 2.512515 GACCATCCACGGCTGCTC 60.513 66.667 0.00 0.00 0.00 4.26
3032 3086 3.005539 AGACCATCCACGGCTGCT 61.006 61.111 0.00 0.00 0.00 4.24
3033 3087 2.512515 GAGACCATCCACGGCTGC 60.513 66.667 0.00 0.00 0.00 5.25
3045 3099 3.695830 TGTTTGTCTATGGTGGAGACC 57.304 47.619 0.61 0.00 42.29 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.