>input_sequence_61745
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-------------------------------------------------------------------ATGGCGCCCGTCC
GAGCAGCCCTCCTCGCCTTCCTCGTGGCCGCGCTGCTCCCGCTCGCCCTGTCCCGCGGGCAGGGGCGTGGCCCGCACCTG
CCGGGGCACGGCCTGGTGCATCGCCACGGGCCTGGCATCGGTCACCACGCCCACGCGCCGCTCGGCGGTGGCGCCTGGGC
CTCCGCGCACGCCACCTTCTACGGCGGCGGTGACGCCTCCGGCACCATGGGTACGGGCAGTAAACACCGTCCCTCACAGC
ATTGTATTAGTACTGTTTCTTGGTGCATCTTTGATGCCGCTCGCTGCCGGTGCTTACCGTTTGCTGGTGCGCGTGTGCAG
GTGGGGCGTGCGGCTACGGGAACCTCTACAGCACGGGGTACGGCTCCAACACGGCGGCCCTCAGCACGGCGCTCTTCAAC
AACGGCCTCAGCTGCGGGGCCTGCTTCGAGGTGCGGTGCGACCCGGGCGGCACCGAGGCCGGCGCGCCCCACGCCTGCCT
CCCCGGCTCCACCGTGGTGACCGCCACCAACTTCTGCCCGCCCAACTTCGGCGAGTCCTCCGACGCCGGCGGCTGGTGCA
ACCCTCCCCGCGCCCACTTCGACATGTCCCAGCCCGTCTTCCAGCGCATCGCGCTCTACCGGGCCGGCATTGTCCCCGTC
TCCTACCGCAGGTTCGCCCCCTTCCGTCACGCATTACTACCTTTGTCTGCCCAAGAACTGTT-AAGGGAGTTGACACTGA
CGGTGCCGTGGATCTGCTCGTGCAGGGTGGCGTGCCAGAAGAAGGGCGGCATCCGGTTCACCATCAACGGCCACTCCTAC
TTCAACCTGGTGCTCGTCACCAACGTGGGCGGCCCCGGCGACGTGCACGCGGTGTCCGTCAAGTCCACGCGCTCGGCGGC
GTGGCAGTCGCTCTCCCGCAACTGGGGGCAGAACTGGCAGAGCAACGCGCTCCTCGACGGGCAGGGCCTCTCCTTCCGCG
TCACGGCCGGCAACGGCCAGTCCGTGGTCTCCAACAACGCCGTCCCGCGCGGCTGGTCCTTCGGCCAGACCTTCAGCGGC
GCCCAGTTCCACTGA-----------------------------------------------------------------
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>chr6D_1_TraesCS6D01G287100
ATCGCGACTCGCTAGAAAATAATCTCCGGTCTGCACTGGCGTCGTAGAATGTTGAAGTTAAAAATCAACGAGACTTCTCC
GTACTTTGGTCAAAGATACTGTAGAAACCTTTGCTTAAAAAAAT-CCGCTTGCCACCTACAATCCCGGGGCTGACAACTT
CCGTTAGAATATAGGAGCATTGCAGGTTCTTGTTCTTAAGCAACC----------GACTGACCCGAGCCTGAGACCAGAG
CTCCTCCCCAGGGCGTCCTTATTTTACTTCCAGATTTGTGTATTCGC-AGGCCACACCAAACACCGGAGCAAATCCAACA
AACCACCGAGTTTTGTTTAAAACTGAAAACCAGAACATCCAGTC-AGTGCCATGCAACAGGCCACGTGATCTTCCACGGA
ACGTTAGTACTCCACTACTAGTACCACGACAAGCAGTAATGCAATCAAAAACCCAACGCCCGTGGCCGGCACGTTCGACG
GAAATTTCCATCGACCTTTCATCATCGCGGAGGTGGAGCTACCAGCCGTGCTACGCATCTGTAAATTGCCCGCGAACCAA
GCAAGCCTGCCACT------CTAGCTAGCTCTATGCGCAGCAGTACCTCCCGCCCGGCCCCCTTCCAAACTTCGCACCGC
CGCGCGGGAGTACGCCCAAACCAGTCCACTCTCCACCCACCA-CAAAACCACAGCTTTTGTCTTGGCTGCTGCTGTTGCT
GCCGCTGCTTTTACCACTCCCGCCACGCCCCCCAACGCCCCAGGAAACCCGTGTCGCGGCCTGCGTGCCGCTCCACCTGC
TGC-TTTTCCACCGCGGGCCCCGCCCGCGTGCCTGCCGTGCCCGCCCTACGCCTCGCTCCACAGTCCACACTGCGCCGCA
CCGTTTCGAAACCGTTCGCGCCGCGCTGCCCCCCTCTATTTATGGGATCCCAGCCCCGGCAC-----CAAAGCACATCCC
CACCGCGCTCCACCCACCCCAGCCGGCCTCACCGCGCGCCAGGCA-GCCGCTCCACCGTGCGTGCCAATGGCGCCCGTCC
GAGCAGCCCTCCTCGCCTTCCTCGTGGCCGCGCTGCTCCCGCTCGCCCTGTCCCGCGGGCAGGGGCGTGGCCCGCACCTG
CCGGGGCACGGCCTGGTGCATCGCCACGGGCCTGGCATCGGTCACCACGCCCACGCGCCGCTCGGCGGTGGCGCCTGGGC
CTCCGCGCACGCCACCTTCTACGGCGGCGGTGACGCCTCCGGCACCATGGGTACGGGCAGTAAACACCGTCCCTCACAGC
ATTGTATTAGTACTGTTTCTTGGTGCATCTTTGATGCCGCTCGCTGCCGGTGCTTACCGTTTGCTGGTGCGCGTGTGCAG
GTGGGGCGTGCGGCTACGGGAACCTCTACAGCACGGGGTACGGCTCCAACACGGCGGCCCTCAGCACGGCGCTCTTCAAC
AACGGCCTCAGCTGCGGGGCCTGCTTCGAGGTGCGGTGCGACCCGGGCGGCACCGAGGCCGGCGCGCCCCACGCCTGCCT
CCCCGGCTCCACCGTGGTGACCGCCACCAACTTCTGCCCGCCCAACTTCGGCGAGTCCTCCGACGCCGGCGGCTGGTGCA
ACCCTCCCCGCGCCCACTTCGACATGTCCCAGCCCGTCTTCCAGCGCATCGCGCTCTACCGGGCCGGCATTGTCCCCGTC
TCCTACCGCAGGTTCGCCCCCTTCCGTCACGCATTACTACCTTTGTCTGCCCAAGAACTGTT-AAGGGAGTTGACACTGA
CGGTGCCGTGGATCTGCTCGTGCAGGGTGGCGTGCCAGAAGAAGGGCGGCATCCGGTTCACCATCAACGGCCACTCCTAC
TTCAACCTGGTGCTCGTCACCAACGTGGGCGGCCCCGGCGACGTGCACGCGGTGTCCGTCAAGTCCACGCGCTCGGCGGC
GTGGCAGTCGCTCTCCCGCAACTGGGGGCAGAACTGGCAGAGCAACGCGCTCCTCGACGGGCAGGGCCTCTCCTTCCGCG
TCACGGCCGGCAACGGCCAGTCCGTGGTCTCCAACAACGCCGTCCCGCGCGGCTGGTCCTTCGGCCAGACCTTCAGCGGC
GCCCAGTTCCACTGACCGCCCGCGTCATCCATCCGCCGAAGCAGTACTATCTTGTAGTAGTAGTGGTCAGTAGTGTTCGT
CGTCAACCTCCCGATTGGAGCGTGCTGGGAAGCGCCATGGTTTTAT-GATGGTTCTTCCACAAGCATCCGACGCTCTTTG
GGGATTGGAAGCAGTAGCAGGTAGTTAGGCCTAGTATTATCATGGGCTTTTAATTGTCTGGTTAGCGCGCGTGAGTGAGT
GAGTGGTAGCTGAAGCCTAAAGCATTTGAACGAGGTTTTGGCTAGGATGGCAGCGGTGGTAAAGGCC-GGCTTGATTAAC
CGACGCCGCCTTGTATCACCCGCCTGTTTAGCGAGTGGGCCTCTTGGGTGGTGGCCTTTGTCTCGTGGATGTTTTGGTGT
GGTACTCTTCTGTCTGTGTGGTGTGTGTGCTTGGCTGTGATGTAACCTCAGACCGAGTTAATTTAAGCCTCTGGCTTTTG
CATGTTTTACTTCCTTCCCTACTGAGTG-----------------------CTAGTACTTGTCCAATCTTGCAAATTTAC
TCTGCTGCTGTCTTCAACTCGTAAATGAGCAAACCTTCAGACGGAAAGCAGATTTCTTTTCTGGTCGATTTCTGCAGCCC
GCCGTGGGAAAGAGAGGGTAAGGGTCGGGCAGCCCGCCGTGGGAAAGAGAGGGTAAGGGTCGCCACGCCCGTATCGCGGC
GGAAATGGCAGCGATGGATGCGGCTAATGCGGCGGCGTGGGCGGCCGCAGAGGAGAAAGACATGCGCACCCACATTGTGA
AGAAACGGAAGCAGAGGAACACGCATGCCCTCGCCTGAGAGCAGAATCGAGCGGTCCGTGCCATGGCCGGACTGCCACCG
AAGGAGGAGAAGGAGGACAGCGACTGCGGGGACAGCTCTGGCGCAAGCAGATCCAGCTCGATCCATACCGCGTTTTCGAC
CGGTAATTCCGTGAGAAGGACAACAAGGGCGCCGGGAAGGACAAGAGCAGCCGTGGATGGTCTCCACCATAGACAAACAT
>chr6B_1
ATCGCCACTCGCTAGAAAATAATCTCCGGTCTGCACTGGCGTCGTAGAATGTTGAAGTTAAAAATCAACGAGACTTCTTC
GTACT--------------TGTAGAAACCTTTGCTTAAAAAAATTCCGCTTGCCACCTACAATCCCGTGGCTGACAACTT
CCGTTAGAATATA--AGCATTGCAGGTTCTTGTTCTTAAGTAACT----------AACTGACT---------GACCCGAG
CTCCTCCCTACGGCGTCCTTATTTTACTTCCAGATTTGTCTATTCGC-AG-CCACAGCAAACACCGGAGCAAAACCAACA
AACCACCGAGTTTTGTTTAAAACTGAAAACCA-AACATCCAGTC-AGTGCCATGCAACAGGCCACGTGATCTTCCACGGA
ACGTA---G---------TAGTACCACGACAAGCA-TAATGCAATCA-AAACCCAACGCCCATGGCGGGCACGTTCGACG
GAAATTTCCATCGACCTTTCATCATCGCGGAGGTGGAGCTACCAGCCGTGCTACGCATCTGTAAATTGCCCGCGAACCAA
GCAAGCCTACCACTCTACTACTAGCTAGCTCTGTGT---GCAGTACCTCCCGCCCGGCCCCCTTCCAAACTTTGCACGGC
CGCGCGGGAGTACGCCCGAACCAGTCCACTCTCCACCCACCGCCAACGCCTCAGCTTTTGTTCTGGCTGCTGCT------
---GCTGCTTTTACCACTCCCCCCACGCCCCCCAACGCCCCAGGAAACCCGTGTCGCGGCCTCCGTGCCGCTCCACCTGC
GGC-TTTTCCAGCGCGGGCCCCACCCGCGTGCCA----TGCCCGCCCTACGCCTCGCTCCACAGTCCACACTGCGCCGCA
CCGTTTCGAAACCGTTCGCGCCGCGCCGCCCCGCTCTATTTATGGGATCCCAGCCCCAGCCC-----CAGAGCACATCCC
CACCGCACTCCACCCACCCCAGCCGGCCTCACCGCGCACCAGGCACGCCGCTCCACCG----TGACGATGGCGCCCGTCC
GAGCAGCCCTCCTCGCCTTCCTCGTGGCCGCGCTGCTCCCGCTCGCCCTGTCTCGTGGGCAGGGGCGTGGCCCGCATCTG
CCGGGGCACGGCCTGGTCCATCGGCACGGGCCTGGCATCGGTCACCACGCCCACGCGCCGCTCGGCGGTGGCGCCTGGGC
CTCCGCGCACGCCACCTTCTACGGCGGCGGCGACGCCTCCGGCACCATGGGTACGTGCAGTAAACACCGTCACTCACAGC
ATTGTA---GTACTATTTCTTGGTGCATCTTTGATGCCTTTCCCTGCCGGTGCTTACCGTTTGCGCGTGCGCGTGTGCAG
GTGGGGCGTGCGGCTACGGGAACCTCTACAGCACGGGGTACGGCTCGAACACGGCGGCCCTGAGCACGGCGCTCTTCAAC
AACGGCCTCAGCTGCGGGGCCTGCTTCGAGGTGCGGTGCGACCCGGGCGGCACCGAGGCCGGCGCCCCCCACGCCTGCCT
CCCCGGCTCCACCGTGGTGACGGCCACCAACTTCTGCCCGCCCAACTTCGGCGAGTCCTCCGACGCCGGCGGCTGGTGCA
ACCCTCCCCGCGCCCACTTCGACATGTCCCAGCCCGTCTTCCAGCGCATCGCGCTCTACCGGGCCGGCATTGTCCCCGTC
TCCTACCGCAGGTTCGTCCCCTTCTGTCACGCATTACTACCTTTGTCTGCCCTCGAACTGTTCAAGAGAGTTGACACTGA
CGGTGCCGTGGATCTGCTCGTGCAGGGTGGCGTGCCAGAAGAAGGGCGGCATCCGGTTCACCATCAACGGCCACTCCTAC
TTCAACCTCGTCCTCGTCACCAACGTGGGCGGCCCCGGCGACGTGCACGCGGTGTCCGTCAAGTCCTCCCGCT---CGGC
GTGGCAGTCGCTCTCCCGCAACTGGGGGCAGAACTGGCAGAGCAACGCGCTGCTCGACGGGCAGGGCCTCTCCTTCCGCG
TGACGGCCGGCAACGGCCAGTCCGTGATCTCCAACAACGCCGTCCCGCGCGGCTGGTCCTTCGGCCAGACCTTCAGCGGC
GCCCAGTTCCACTGAGCACCTGCATCATCCATCCGCCGAAGCAGTACTATCTTGTAGTAGTAGTGGTCAGTAGTGATCGT
CGTCAACCTCCCGATTGGAGCGTGCTGGGAAGCGCCATGGTTTTATGGATGGTTCTTCCACAAGCATCCGACGCTCTCTG
GGGATCTGAAGTCGTAGCAGGTAGTTAGGCCTAGTATTATCATGGGCTTTTAATTGTCTGGTTAGCGTGAGTGGGTGAGT
GAGTGGTAGCTAAAGCCTAAAGCATTTGAACGAGGTTTTGGCTAGGATGGCAGCGGTGGTAAAGGCT-GGCTTGATTAAC
CGACGCCGCCTTGTATCACCCGCCTGTTTAGCGAGTGGGCCTCTTGGGTGGTGGCCTTTGTCTCGTGGATGTTTTGGTGT
GGTACT------TCTGTGTGGTGTGTGTGCTTGGCTGTGATGTAACCTCAGACCGAGTTAATTTAAGCCTCTGGCTTTTG
CATGTTTTACTTCCTACCGTACTGCAATTTTACTCTGTTGAAGATAGTATACTAGTGCTTGCCCCATCTTGCAATTTTAC
TGCCCTGCTGTCTTCAACTCGCAAATGAGCTAACTTTCAAACGGAT-GCAGATAACTTTTCTGGTCGATTTCTG------
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>chr6A_1
ATCGCCACTCGCTAGGAAATAAACTCCGGTCTGTGCTGGCGTCGTAGAATGTTGAAGTTAAAAATCAACGAGACTTCTCC
GTACTTTGGTCAAAGATACCGTAGAAACCTTTGCTTAAAAAAATCCCGCTTGCCACCTACAATCCCGGGGCTGACAAGTT
CCGTTAGAATATAGGAGCATTGCAGGTTCTTGTTCTTAAGCAACCGACTCAGTCCGACTGACCCGAGCTTGAGACCGGAG
CTCCTCCCCACGGCGTCCTTATTTTACTTCCAGATTTGTGTATTCGCAAG-CCACACCAAACACCGGAGCAAAACCAACA
AACCACTAAGCTTTGTTTAAAACTGAAAACCA-AAACACCCAGTTAGTGCCATGCAACAGGCCACGTGATCTTCCACGGA
ACGTAGCAG---------TAGTACCACGACAAGCAGTAACGCAATCG-AAACCCGGCGCCCGTGGCCGGCACGTTCGACG
GAAATTTCCATCCACCTTTCATCATCGTGGAGCCA-------------TGCTATGCATCTGTAAATTGCCCGCGAACCAA
GCAGGCCTACGGGTCTAGTGC----------------------TAGCTCCCGCTCGGCCCACTTCCAAACTTGCCACCGC
CGCGCGGGAGTACGCCCGAGCCAGTCCACCCTCCACCCACCGCCAGCGCCACAGCTTTTGTCTTGGCCGCTGCCGCTGC-
--CGCTGCTTTTACCAGTCCCGCCACGGCCCCCAACGCCCCAGGAAACCCGTGTCGCGGCCTCCGTGCCGCTCCACCTGC
TGCTTTTTCCACCGCGGGCCCCGCCCGCGTGCCCGCCCCAG----------------TCCTCACTCCACACTGCGCCGCA
CCGTTTCGAAACCGTTCGCGCCGCGCCGCCCGGCTCTATTTATGGGATCCCAGCCCGGACGCCAGAGCACAGCACATCCC
CACCGCGCTCCACCCACCCCCGCCGGCCTCACCGCGCACCAGGCA-GCCGCTCCACCA----TGCCGATGGCGCCCGCCC
GAGCAGCCCTCCTCGCCTTCCTCGTGGCCGCGCTGCTCCCGCTCGCCCTGTCCCGGGGGCAGGGGCGTGGCCCGCACCTG
CCGGGGCACGGCCTGGTCCACCGTCACGGGCCTGGCATCGGTCACCACGCCCACGCGCCGCTCGGCGGTGGCGCCTGGGC
CTCCGCGCACGCCACCTTCTACGGAGGCGGTGACGCCTCCGGCACCATGGGTACGTGCAGTAAACACCGTCACTCACAGC
ATTGTACTAGTACTGTTTCTTGGTGCATCTTAGATGCCGCTCGCTGCCGGTGCTCACCGTCTGCTCGTGCGCGTGTGCAG
GTGGGGCGTGCGGCTACGGGAACCTCTACAGCACGGGGTACGGCTCCAACACGGCGGCCCTGAGCACGGCACTCTTCAAC
AACGGCCTCAGCTGCGGGGCCTGCTTCGAGGTGCGGTGCGACCCCGGCGGCACCGAGGCCGGCGCGCCGCACGCCTGCCT
CCCCGGCTCCACCGTGGTGACCGCCACCAACTTCTGCCCGCCCAACTTCGCCGAGTACTCCGACGCCGGCGGCTGGTGCA
ACCCTCCCCGCGCCCACTTCGACATGTCCCAGCCCGTCTTCCAGCGCATCGCGCTCTACCGGGCCGGCATTGTCCCCGTC
TCCTACCGCAGGTTCGCCCCCTTCCGTCACGCATTACTACCCTTGCCTGCCCAAGAACTGTTAAAGGGAGTTGACACTGA
CGGTGGCGTGGATCTGGTCGTGCAGGGTGGCGTGCCAGAAGAAGGGCGGCATCCGGTTCACCATCAACGGCCACTCCTAC
TTCAACCTGGTGCTCGTCACCAACGTGGGCGGCCCCGGCGACGTGCACGCGGTGTCCGTCAAGTCCACGCGCTCGGG---
GTGGCAGTCGCTCTCCCGCAACTGGGGGCAGAACTGGCAGAGCAACGCGCTGCTCGACGGGCAGGGCCTCTCCTTCCGCG
TCACGGCCGGCAACGGCCAGTCCGTCGTCTCCAACAACGCCGTGCCGCGCGGCTGGTCCTTCGGCCAGACCTTCAGCGGC
GCCCAGTTTCACTGAGCGCCCGCATCATCCATCCGCCGAAGCAGTACTATCTTGTAGTAGTAGTGGTCAGTAGTGGTCGT
CGTCAACCTCCCGACTGGAGCGTGCTGGGAAGCGCCATGGTTTTAT-GATGGTTCTTCCACAAGCGTCCGACGCTCTTCG
GGGATTCGAGGCTGTAGCAGGTAGTTAGGCCTAGTATTATCATGGGCTTTTAATTGTCTGGTTAGCGTGCGTGAGTGAGT
GAGTGGTAGCTGAAGCCTAAAGCATTTGAACGAGGTTTTGGCTAGGATGGCAGCGGTGGTAAAGGCTTGGCTTGATTAAC
CGACGCCGCCTTGTATCACCCGCCTGTTTAGCGAGTGGGCCTCTTGGGTGGTGGCCTTTGTCTCGTGGATGTTTTC----
---------------GTGTGTGGTGTGTGCTTGGCTGTGATGTAACCTCAGACCGAGTTAATTTAAGCCTCTGGCTTTTG
CATGTTTTACTTCCTCCTCTTCTGAG------------------------------------------------------
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>SNPs
-----S--------------------------------------------------------------------------
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--------------------------------------------------------------------S-------S---
----------S---------------------------------------S----------------------S------
--------------------------------S-----------------------------------------------
----SSSSSSSSSSSSSS-----------------------------S--------------------------------
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--------S-----------------------S--SSSS---------------------------------S-------
-----------------S-----------------------S----SS---------------------------S---S
SS------------------------------------------------------------S-----------------
---------------------------------S---S------------------------------------------
--------------------------S-----S---------------------------S--------S----------
-------------------------------------S--------------------SSSS----S-------------
-------------------------------------------------------S------------------------
-----------------S-----S--------------------------------------------------------
-------------------------------------------------------S---------------S--------
------S----------------------------------------------------------S--------------
-------------------------------------------------------------S------------------
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---------------------------------------------------S----------------------------
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---------------S-------S---------------------------------------------------S----
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------S-----S------------------------------------------------------S------------
------------------------------------------------------------------S-------------
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------SSSSSS--------------------------------------------------------------------
---------------S----------SS----------------------------S----S--S---------S-----
-SSS-----------------S--------S---S----S-----SS------SS-------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_687
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---------------------------CACTCTCCACCCACCACAAA---------------------------------
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>reverse_2643
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--TGCTGCTGTCTTCAACTCGT----------------------------------------------------------
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