Multiple sequence alignment - TraesCS6D01G282100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G282100 chr6D 100.000 2315 0 0 1 2315 389608383 389606069 0.000000e+00 4276.0
1 TraesCS6D01G282100 chr6B 93.225 1727 88 13 1 1720 583191710 583190006 0.000000e+00 2514.0
2 TraesCS6D01G282100 chr6B 91.935 124 9 1 1739 1862 583190023 583189901 3.060000e-39 172.0
3 TraesCS6D01G282100 chr6A 92.626 1451 73 14 287 1720 535994786 535993353 0.000000e+00 2056.0
4 TraesCS6D01G282100 chr6A 91.121 214 9 5 1 206 535994996 535994785 4.870000e-72 281.0
5 TraesCS6D01G282100 chr6A 93.600 125 4 4 1739 1860 535993370 535993247 1.410000e-42 183.0
6 TraesCS6D01G282100 chr4D 81.854 1003 145 25 654 1640 31762690 31763671 0.000000e+00 809.0
7 TraesCS6D01G282100 chr4D 93.137 102 4 3 195 294 333063367 333063267 1.850000e-31 147.0
8 TraesCS6D01G282100 chr4D 92.233 103 6 2 198 299 236940120 236940221 6.670000e-31 145.0
9 TraesCS6D01G282100 chr4D 84.375 64 7 3 1911 1972 133481773 133481835 2.480000e-05 60.2
10 TraesCS6D01G282100 chr4B 82.599 931 116 28 721 1640 45206043 45206938 0.000000e+00 780.0
11 TraesCS6D01G282100 chr4A 80.636 1007 140 36 664 1644 571031940 571030963 0.000000e+00 728.0
12 TraesCS6D01G282100 chr4A 93.814 97 4 2 203 298 685751096 685751191 6.670000e-31 145.0
13 TraesCS6D01G282100 chr5A 83.955 268 43 0 1000 1267 138202311 138202578 8.210000e-65 257.0
14 TraesCS6D01G282100 chr5A 85.714 63 8 1 1911 1972 494395117 494395179 5.340000e-07 65.8
15 TraesCS6D01G282100 chr5A 75.138 181 19 18 2020 2180 476443087 476442913 6.910000e-06 62.1
16 TraesCS6D01G282100 chr2D 99.000 100 1 0 2216 2315 131814034 131813935 1.830000e-41 180.0
17 TraesCS6D01G282100 chr2D 97.087 103 3 0 2213 2315 444471033 444471135 8.500000e-40 174.0
18 TraesCS6D01G282100 chr1D 99.000 100 1 0 2216 2315 23199402 23199303 1.830000e-41 180.0
19 TraesCS6D01G282100 chr1D 98.039 102 1 1 2215 2315 180666737 180666838 2.360000e-40 176.0
20 TraesCS6D01G282100 chr1D 91.597 119 7 3 2198 2315 327601887 327601771 6.620000e-36 161.0
21 TraesCS6D01G282100 chr1D 94.845 97 3 2 194 288 90208042 90207946 1.430000e-32 150.0
22 TraesCS6D01G282100 chr7D 98.020 101 2 0 2215 2315 425828965 425829065 2.360000e-40 176.0
23 TraesCS6D01G282100 chr7D 94.595 111 3 3 2205 2313 319110377 319110486 3.960000e-38 169.0
24 TraesCS6D01G282100 chr7D 95.699 93 2 2 200 291 141292176 141292085 5.150000e-32 148.0
25 TraesCS6D01G282100 chr7D 94.737 95 2 2 205 296 79628428 79628334 6.670000e-31 145.0
26 TraesCS6D01G282100 chr3D 97.115 104 1 2 2214 2315 172812487 172812384 8.500000e-40 174.0
27 TraesCS6D01G282100 chr3D 97.087 103 2 1 2213 2315 372460305 372460406 3.060000e-39 172.0
28 TraesCS6D01G282100 chr3D 94.737 95 3 2 205 298 84113413 84113320 1.850000e-31 147.0
29 TraesCS6D01G282100 chr2B 95.699 93 4 0 204 296 483458000 483458092 1.430000e-32 150.0
30 TraesCS6D01G282100 chr2B 100.000 28 0 0 1 28 342302554 342302581 4.000000e-03 52.8
31 TraesCS6D01G282100 chrUn 95.699 93 2 2 202 292 84435468 84435376 5.150000e-32 148.0
32 TraesCS6D01G282100 chr5D 83.178 107 11 6 2075 2177 365442558 365442661 8.810000e-15 91.6
33 TraesCS6D01G282100 chr7A 97.222 36 1 0 1863 1898 498321272 498321307 6.910000e-06 62.1
34 TraesCS6D01G282100 chr3A 100.000 30 0 0 1863 1892 477313232 477313203 3.210000e-04 56.5
35 TraesCS6D01G282100 chr3A 100.000 30 0 0 1863 1892 477318789 477318760 3.210000e-04 56.5
36 TraesCS6D01G282100 chr3A 80.822 73 10 4 2114 2183 554655544 554655473 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G282100 chr6D 389606069 389608383 2314 True 4276 4276 100.000 1 2315 1 chr6D.!!$R1 2314
1 TraesCS6D01G282100 chr6B 583189901 583191710 1809 True 1343 2514 92.580 1 1862 2 chr6B.!!$R1 1861
2 TraesCS6D01G282100 chr6A 535993247 535994996 1749 True 840 2056 92.449 1 1860 3 chr6A.!!$R1 1859
3 TraesCS6D01G282100 chr4D 31762690 31763671 981 False 809 809 81.854 654 1640 1 chr4D.!!$F1 986
4 TraesCS6D01G282100 chr4B 45206043 45206938 895 False 780 780 82.599 721 1640 1 chr4B.!!$F1 919
5 TraesCS6D01G282100 chr4A 571030963 571031940 977 True 728 728 80.636 664 1644 1 chr4A.!!$R1 980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 1262 0.181114 TGCAGCATGATGGTACTCCC 59.819 55.0 13.73 0.0 39.69 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 2133 0.662374 CAGCAGCTTCAGCAAAACCG 60.662 55.0 0.75 0.0 45.16 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.550437 AGCTTGCCACTTGGTATCTAG 57.450 47.619 0.00 0.00 37.57 2.43
116 117 2.371910 TAATCATGCCGTCGTGAACA 57.628 45.000 0.00 0.00 41.18 3.18
143 152 0.908198 GTGCCTTCCCTCATCTCTGT 59.092 55.000 0.00 0.00 0.00 3.41
170 179 7.509546 AGTTGAGGAATCAAGTAGTTCTTCAA 58.490 34.615 8.09 8.09 43.58 2.69
183 192 6.763610 AGTAGTTCTTCAAAGTTGAGAGTTGG 59.236 38.462 0.00 0.00 38.61 3.77
185 194 5.946377 AGTTCTTCAAAGTTGAGAGTTGGTT 59.054 36.000 0.00 0.00 38.61 3.67
213 222 5.602978 TCATTCCTTCATAGTTACTCCCTCC 59.397 44.000 0.00 0.00 0.00 4.30
231 240 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
232 241 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
278 288 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
336 346 8.424918 GGTTCATCCTCTGTAAGATGAGATAAA 58.575 37.037 3.23 0.00 47.00 1.40
409 419 9.991906 ATTTCATTGAGAGTTGTTGAATCATTT 57.008 25.926 0.00 0.00 0.00 2.32
447 457 6.132791 TGAGATGACGTTACAAGATAGACC 57.867 41.667 0.00 0.00 0.00 3.85
514 524 6.046593 TCGATTTAAGCATGGTCTCGTATTT 58.953 36.000 0.00 0.00 0.00 1.40
515 525 7.204604 TCGATTTAAGCATGGTCTCGTATTTA 58.795 34.615 0.00 0.00 0.00 1.40
516 526 7.870954 TCGATTTAAGCATGGTCTCGTATTTAT 59.129 33.333 0.00 0.00 0.00 1.40
517 527 9.135843 CGATTTAAGCATGGTCTCGTATTTATA 57.864 33.333 0.00 0.00 0.00 0.98
521 531 9.865321 TTAAGCATGGTCTCGTATTTATATACC 57.135 33.333 0.00 0.00 34.37 2.73
522 532 7.476540 AGCATGGTCTCGTATTTATATACCA 57.523 36.000 0.00 0.00 39.66 3.25
523 533 7.903145 AGCATGGTCTCGTATTTATATACCAA 58.097 34.615 0.00 0.00 38.88 3.67
524 534 8.372459 AGCATGGTCTCGTATTTATATACCAAA 58.628 33.333 0.00 0.00 38.88 3.28
525 535 9.162764 GCATGGTCTCGTATTTATATACCAAAT 57.837 33.333 0.00 1.10 38.88 2.32
531 541 9.850628 TCTCGTATTTATATACCAAATTCTCGG 57.149 33.333 0.00 0.00 34.37 4.63
532 542 9.635520 CTCGTATTTATATACCAAATTCTCGGT 57.364 33.333 0.00 0.00 39.41 4.69
538 548 8.597662 TTATATACCAAATTCTCGGTACTTGC 57.402 34.615 4.07 0.00 40.50 4.01
539 549 3.134574 ACCAAATTCTCGGTACTTGCA 57.865 42.857 0.00 0.00 32.31 4.08
540 550 3.074412 ACCAAATTCTCGGTACTTGCAG 58.926 45.455 0.00 0.00 32.31 4.41
541 551 2.159517 CCAAATTCTCGGTACTTGCAGC 60.160 50.000 0.00 0.00 0.00 5.25
542 552 2.472695 AATTCTCGGTACTTGCAGCA 57.527 45.000 0.00 0.00 0.00 4.41
543 553 2.698855 ATTCTCGGTACTTGCAGCAT 57.301 45.000 0.00 0.00 0.00 3.79
544 554 1.725641 TTCTCGGTACTTGCAGCATG 58.274 50.000 6.74 6.74 40.87 4.06
545 555 0.894835 TCTCGGTACTTGCAGCATGA 59.105 50.000 14.99 0.00 39.69 3.07
546 556 1.482182 TCTCGGTACTTGCAGCATGAT 59.518 47.619 14.99 0.00 39.69 2.45
547 557 1.863454 CTCGGTACTTGCAGCATGATC 59.137 52.381 14.99 7.01 39.69 2.92
548 558 1.206849 TCGGTACTTGCAGCATGATCA 59.793 47.619 14.99 0.00 39.69 2.92
549 559 2.158914 TCGGTACTTGCAGCATGATCAT 60.159 45.455 14.99 1.18 39.69 2.45
550 560 2.222678 CGGTACTTGCAGCATGATCATC 59.777 50.000 14.99 1.17 39.69 2.92
551 561 2.222678 GGTACTTGCAGCATGATCATCG 59.777 50.000 14.99 3.09 39.69 3.84
552 562 2.034104 ACTTGCAGCATGATCATCGT 57.966 45.000 14.99 0.00 39.69 3.73
553 563 2.362736 ACTTGCAGCATGATCATCGTT 58.637 42.857 14.99 0.00 39.69 3.85
554 564 3.534554 ACTTGCAGCATGATCATCGTTA 58.465 40.909 14.99 0.00 39.69 3.18
555 565 4.132336 ACTTGCAGCATGATCATCGTTAT 58.868 39.130 14.99 0.00 39.69 1.89
556 566 4.577693 ACTTGCAGCATGATCATCGTTATT 59.422 37.500 14.99 0.00 39.69 1.40
557 567 5.066893 ACTTGCAGCATGATCATCGTTATTT 59.933 36.000 14.99 0.00 39.69 1.40
558 568 5.503662 TGCAGCATGATCATCGTTATTTT 57.496 34.783 4.86 0.00 39.69 1.82
559 569 5.893687 TGCAGCATGATCATCGTTATTTTT 58.106 33.333 4.86 0.00 39.69 1.94
579 589 6.663480 TTTTTACGTAAGCGCTCAATTTTC 57.337 33.333 12.06 0.00 42.83 2.29
580 590 5.600908 TTTACGTAAGCGCTCAATTTTCT 57.399 34.783 12.06 0.00 42.83 2.52
581 591 3.455619 ACGTAAGCGCTCAATTTTCTG 57.544 42.857 12.06 0.00 42.83 3.02
582 592 3.064207 ACGTAAGCGCTCAATTTTCTGA 58.936 40.909 12.06 0.00 42.83 3.27
583 593 3.684788 ACGTAAGCGCTCAATTTTCTGAT 59.315 39.130 12.06 0.00 42.83 2.90
584 594 4.024438 CGTAAGCGCTCAATTTTCTGATG 58.976 43.478 12.06 0.00 0.00 3.07
585 595 4.201714 CGTAAGCGCTCAATTTTCTGATGA 60.202 41.667 12.06 0.00 0.00 2.92
586 596 4.771590 AAGCGCTCAATTTTCTGATGAA 57.228 36.364 12.06 0.00 0.00 2.57
587 597 4.088823 AGCGCTCAATTTTCTGATGAAC 57.911 40.909 2.64 0.00 31.02 3.18
588 598 3.119708 AGCGCTCAATTTTCTGATGAACC 60.120 43.478 2.64 0.00 31.02 3.62
589 599 3.119708 GCGCTCAATTTTCTGATGAACCT 60.120 43.478 0.00 0.00 31.02 3.50
590 600 4.616835 GCGCTCAATTTTCTGATGAACCTT 60.617 41.667 0.00 0.00 31.02 3.50
591 601 5.091431 CGCTCAATTTTCTGATGAACCTTC 58.909 41.667 0.00 0.00 31.02 3.46
592 602 5.106396 CGCTCAATTTTCTGATGAACCTTCT 60.106 40.000 0.00 0.00 31.02 2.85
593 603 6.092670 CGCTCAATTTTCTGATGAACCTTCTA 59.907 38.462 0.00 0.00 31.02 2.10
594 604 7.201679 CGCTCAATTTTCTGATGAACCTTCTAT 60.202 37.037 0.00 0.00 31.02 1.98
595 605 8.127954 GCTCAATTTTCTGATGAACCTTCTATC 58.872 37.037 0.00 0.00 31.02 2.08
596 606 8.511604 TCAATTTTCTGATGAACCTTCTATCC 57.488 34.615 0.00 0.00 31.02 2.59
597 607 8.331740 TCAATTTTCTGATGAACCTTCTATCCT 58.668 33.333 0.00 0.00 31.02 3.24
598 608 8.619546 CAATTTTCTGATGAACCTTCTATCCTC 58.380 37.037 0.00 0.00 31.02 3.71
599 609 5.878406 TTCTGATGAACCTTCTATCCTCC 57.122 43.478 0.00 0.00 0.00 4.30
600 610 5.149584 TCTGATGAACCTTCTATCCTCCT 57.850 43.478 0.00 0.00 0.00 3.69
601 611 5.533112 TCTGATGAACCTTCTATCCTCCTT 58.467 41.667 0.00 0.00 0.00 3.36
602 612 5.966935 TCTGATGAACCTTCTATCCTCCTTT 59.033 40.000 0.00 0.00 0.00 3.11
603 613 5.994250 TGATGAACCTTCTATCCTCCTTTG 58.006 41.667 0.00 0.00 0.00 2.77
604 614 4.844349 TGAACCTTCTATCCTCCTTTGG 57.156 45.455 0.00 0.00 0.00 3.28
605 615 4.175962 TGAACCTTCTATCCTCCTTTGGT 58.824 43.478 0.00 0.00 0.00 3.67
606 616 4.601857 TGAACCTTCTATCCTCCTTTGGTT 59.398 41.667 0.00 0.00 38.98 3.67
607 617 5.788533 TGAACCTTCTATCCTCCTTTGGTTA 59.211 40.000 0.00 0.00 36.78 2.85
608 618 5.959583 ACCTTCTATCCTCCTTTGGTTAG 57.040 43.478 0.00 0.00 33.09 2.34
609 619 5.600749 ACCTTCTATCCTCCTTTGGTTAGA 58.399 41.667 0.00 0.00 36.91 2.10
610 620 5.663556 ACCTTCTATCCTCCTTTGGTTAGAG 59.336 44.000 0.00 0.00 38.72 2.43
611 621 5.900123 CCTTCTATCCTCCTTTGGTTAGAGA 59.100 44.000 0.00 0.00 38.72 3.10
612 622 6.556874 CCTTCTATCCTCCTTTGGTTAGAGAT 59.443 42.308 0.00 0.00 38.72 2.75
613 623 7.730784 CCTTCTATCCTCCTTTGGTTAGAGATA 59.269 40.741 0.00 0.00 38.72 1.98
614 624 9.148879 CTTCTATCCTCCTTTGGTTAGAGATAA 57.851 37.037 0.00 0.00 38.72 1.75
615 625 9.676129 TTCTATCCTCCTTTGGTTAGAGATAAT 57.324 33.333 0.00 0.00 38.72 1.28
644 654 8.682936 ATTAGGCAGTTATGAACTCTATTTGG 57.317 34.615 0.00 0.00 40.46 3.28
645 655 6.067217 AGGCAGTTATGAACTCTATTTGGT 57.933 37.500 0.00 0.00 40.46 3.67
646 656 5.882557 AGGCAGTTATGAACTCTATTTGGTG 59.117 40.000 0.00 0.00 40.46 4.17
647 657 5.066505 GGCAGTTATGAACTCTATTTGGTGG 59.933 44.000 0.00 0.00 40.46 4.61
648 658 5.648092 GCAGTTATGAACTCTATTTGGTGGT 59.352 40.000 0.00 0.00 40.46 4.16
649 659 6.151144 GCAGTTATGAACTCTATTTGGTGGTT 59.849 38.462 0.00 0.00 40.46 3.67
650 660 7.530010 CAGTTATGAACTCTATTTGGTGGTTG 58.470 38.462 0.00 0.00 40.46 3.77
651 661 6.151144 AGTTATGAACTCTATTTGGTGGTTGC 59.849 38.462 0.00 0.00 37.02 4.17
652 662 4.098914 TGAACTCTATTTGGTGGTTGCT 57.901 40.909 0.00 0.00 0.00 3.91
661 671 0.482446 TGGTGGTTGCTCCCATCTTT 59.518 50.000 6.97 0.00 36.51 2.52
662 672 0.890683 GGTGGTTGCTCCCATCTTTG 59.109 55.000 0.00 0.00 36.74 2.77
668 678 4.263905 TGGTTGCTCCCATCTTTGATAGTT 60.264 41.667 0.00 0.00 34.77 2.24
675 685 6.387192 TCCCATCTTTGATAGTTGAGGAAA 57.613 37.500 0.00 0.00 0.00 3.13
676 686 6.973642 TCCCATCTTTGATAGTTGAGGAAAT 58.026 36.000 0.00 0.00 0.00 2.17
682 692 9.606631 ATCTTTGATAGTTGAGGAAATGAGTAC 57.393 33.333 0.00 0.00 0.00 2.73
684 694 6.769134 TGATAGTTGAGGAAATGAGTACGA 57.231 37.500 0.00 0.00 0.00 3.43
692 702 5.243060 TGAGGAAATGAGTACGACTTCAGAA 59.757 40.000 0.00 0.00 0.00 3.02
695 705 6.814146 AGGAAATGAGTACGACTTCAGAATTC 59.186 38.462 0.00 0.00 0.00 2.17
703 713 3.743396 ACGACTTCAGAATTCAGAGTTGC 59.257 43.478 8.44 0.00 0.00 4.17
713 723 6.921857 CAGAATTCAGAGTTGCTGTTTTCATT 59.078 34.615 8.44 0.00 45.14 2.57
716 726 7.750229 ATTCAGAGTTGCTGTTTTCATTCTA 57.250 32.000 0.00 0.00 45.14 2.10
717 727 7.750229 TTCAGAGTTGCTGTTTTCATTCTAT 57.250 32.000 0.00 0.00 45.14 1.98
719 729 9.453572 TTCAGAGTTGCTGTTTTCATTCTATAT 57.546 29.630 0.00 0.00 45.14 0.86
779 1151 7.561251 TCTTTGTGAGATGAAATTACGGGATA 58.439 34.615 0.00 0.00 0.00 2.59
889 1262 0.181114 TGCAGCATGATGGTACTCCC 59.819 55.000 13.73 0.00 39.69 4.30
890 1263 0.536006 GCAGCATGATGGTACTCCCC 60.536 60.000 13.73 0.00 39.69 4.81
897 1270 2.626785 TGATGGTACTCCCCTGTTTCA 58.373 47.619 0.00 0.00 0.00 2.69
948 1321 5.859495 ACCTTTTGTCCTTGTTTTGTCAAA 58.141 33.333 0.00 0.00 0.00 2.69
949 1322 6.292150 ACCTTTTGTCCTTGTTTTGTCAAAA 58.708 32.000 6.65 6.65 34.90 2.44
1084 1457 1.098712 TGAAGGCCGCGAGTTGTTTT 61.099 50.000 8.23 0.00 0.00 2.43
1119 1492 1.915614 GCCATGAGGTGCAGTTCACG 61.916 60.000 0.00 0.00 46.56 4.35
1227 1600 1.565305 GAGCTGTCCGATGCAGTAAG 58.435 55.000 0.00 0.00 36.42 2.34
1322 1695 4.067896 CAGCAGAAGAAGTAACACATGGT 58.932 43.478 0.00 0.00 0.00 3.55
1323 1696 4.067896 AGCAGAAGAAGTAACACATGGTG 58.932 43.478 0.00 0.00 39.75 4.17
1324 1697 3.189287 GCAGAAGAAGTAACACATGGTGG 59.811 47.826 0.00 0.00 37.94 4.61
1331 1704 4.440826 AGTAACACATGGTGGGTAAACA 57.559 40.909 0.00 0.00 28.95 2.83
1362 1738 4.214971 TCGACTTCTAGCTTGTTAAGACGT 59.785 41.667 15.64 6.77 37.98 4.34
1393 1769 3.053291 TGGTGCCGCGGATTTCAC 61.053 61.111 33.48 26.05 0.00 3.18
1418 1798 1.295792 TTTCTCGTGCCGGATTATGC 58.704 50.000 5.05 0.00 0.00 3.14
1433 1813 0.830444 TATGCCTAGCCCCAGTACCG 60.830 60.000 0.00 0.00 0.00 4.02
1471 1855 9.504710 GTAATAATACTCCGTATGCTATGTGAG 57.495 37.037 0.00 0.00 0.00 3.51
1473 1857 6.406692 AATACTCCGTATGCTATGTGAGTT 57.593 37.500 0.00 0.00 35.01 3.01
1489 1873 3.620374 GTGAGTTATCTGGTGAGCATGTG 59.380 47.826 0.00 0.00 0.00 3.21
1587 1972 5.104527 TGCATGTAACCTACTTCAATAGCCT 60.105 40.000 0.00 0.00 0.00 4.58
1711 2098 7.313951 TCTAGATGTATGATCTGTGATAGCG 57.686 40.000 0.00 0.00 0.00 4.26
1712 2099 5.321959 AGATGTATGATCTGTGATAGCGG 57.678 43.478 0.00 0.00 0.00 5.52
1713 2100 4.769488 AGATGTATGATCTGTGATAGCGGT 59.231 41.667 0.00 0.00 0.00 5.68
1714 2101 4.937201 TGTATGATCTGTGATAGCGGTT 57.063 40.909 0.00 0.00 0.00 4.44
1715 2102 5.276461 TGTATGATCTGTGATAGCGGTTT 57.724 39.130 0.00 0.00 0.00 3.27
1716 2103 5.670485 TGTATGATCTGTGATAGCGGTTTT 58.330 37.500 0.00 0.00 0.00 2.43
1717 2104 5.523552 TGTATGATCTGTGATAGCGGTTTTG 59.476 40.000 0.00 0.00 0.00 2.44
1718 2105 2.677836 TGATCTGTGATAGCGGTTTTGC 59.322 45.455 0.00 0.00 0.00 3.68
1720 2107 2.778299 TCTGTGATAGCGGTTTTGCTT 58.222 42.857 0.00 0.00 44.46 3.91
1721 2108 2.742053 TCTGTGATAGCGGTTTTGCTTC 59.258 45.455 0.00 0.00 44.46 3.86
1722 2109 2.744202 CTGTGATAGCGGTTTTGCTTCT 59.256 45.455 0.00 0.00 44.46 2.85
1723 2110 3.146066 TGTGATAGCGGTTTTGCTTCTT 58.854 40.909 0.00 0.00 44.46 2.52
1724 2111 3.568007 TGTGATAGCGGTTTTGCTTCTTT 59.432 39.130 0.00 0.00 44.46 2.52
1725 2112 4.037446 TGTGATAGCGGTTTTGCTTCTTTT 59.963 37.500 0.00 0.00 44.46 2.27
1726 2113 4.982295 GTGATAGCGGTTTTGCTTCTTTTT 59.018 37.500 0.00 0.00 44.46 1.94
1813 2200 1.202510 AGATGAGCTTGCATCCGAGAC 60.203 52.381 10.88 0.00 44.47 3.36
1862 2252 0.249699 TATAGGTCAATGCCCGTGCG 60.250 55.000 0.00 0.00 41.78 5.34
1892 2282 6.506429 CGTTGCAACGCGATATAAATATTC 57.494 37.500 35.89 0.25 46.06 1.75
1893 2283 5.503376 CGTTGCAACGCGATATAAATATTCC 59.497 40.000 35.89 0.00 46.06 3.01
1894 2284 6.367421 GTTGCAACGCGATATAAATATTCCA 58.633 36.000 15.93 0.00 0.00 3.53
1895 2285 6.164408 TGCAACGCGATATAAATATTCCAG 57.836 37.500 15.93 0.00 0.00 3.86
1896 2286 5.699001 TGCAACGCGATATAAATATTCCAGT 59.301 36.000 15.93 0.00 0.00 4.00
1897 2287 6.869388 TGCAACGCGATATAAATATTCCAGTA 59.131 34.615 15.93 0.00 0.00 2.74
1898 2288 7.547722 TGCAACGCGATATAAATATTCCAGTAT 59.452 33.333 15.93 0.00 0.00 2.12
1899 2289 7.846107 GCAACGCGATATAAATATTCCAGTATG 59.154 37.037 15.93 0.00 0.00 2.39
1900 2290 9.083080 CAACGCGATATAAATATTCCAGTATGA 57.917 33.333 15.93 0.00 39.69 2.15
1901 2291 8.630278 ACGCGATATAAATATTCCAGTATGAC 57.370 34.615 15.93 0.00 39.69 3.06
1902 2292 8.248253 ACGCGATATAAATATTCCAGTATGACA 58.752 33.333 15.93 0.00 39.69 3.58
1903 2293 9.083080 CGCGATATAAATATTCCAGTATGACAA 57.917 33.333 0.00 0.00 39.69 3.18
1952 2342 4.274421 GCATCAAGCCGATATGATCATG 57.726 45.455 18.72 2.36 34.12 3.07
1953 2343 3.937079 GCATCAAGCCGATATGATCATGA 59.063 43.478 18.72 6.16 34.12 3.07
1954 2344 4.575236 GCATCAAGCCGATATGATCATGAT 59.425 41.667 18.72 8.25 34.12 2.45
1955 2345 5.504173 GCATCAAGCCGATATGATCATGATG 60.504 44.000 18.72 19.53 34.12 3.07
1956 2346 5.410355 TCAAGCCGATATGATCATGATGA 57.590 39.130 18.72 4.76 0.00 2.92
1957 2347 5.416947 TCAAGCCGATATGATCATGATGAG 58.583 41.667 18.72 4.56 0.00 2.90
1958 2348 3.794717 AGCCGATATGATCATGATGAGC 58.205 45.455 18.72 13.56 32.56 4.26
1960 2350 3.937079 GCCGATATGATCATGATGAGCAA 59.063 43.478 17.84 7.63 46.47 3.91
1961 2351 4.201792 GCCGATATGATCATGATGAGCAAC 60.202 45.833 17.84 10.81 46.47 4.17
1962 2352 4.933400 CCGATATGATCATGATGAGCAACA 59.067 41.667 17.84 8.97 46.47 3.33
1963 2353 5.163884 CCGATATGATCATGATGAGCAACAC 60.164 44.000 17.84 10.17 46.47 3.32
1964 2354 5.163884 CGATATGATCATGATGAGCAACACC 60.164 44.000 17.84 6.57 46.47 4.16
1965 2355 3.353370 TGATCATGATGAGCAACACCA 57.647 42.857 14.30 0.00 40.12 4.17
1966 2356 3.275999 TGATCATGATGAGCAACACCAG 58.724 45.455 14.30 0.00 40.12 4.00
1967 2357 3.054948 TGATCATGATGAGCAACACCAGA 60.055 43.478 14.30 0.00 40.12 3.86
1968 2358 2.703416 TCATGATGAGCAACACCAGAC 58.297 47.619 0.00 0.00 0.00 3.51
1969 2359 1.741706 CATGATGAGCAACACCAGACC 59.258 52.381 0.00 0.00 0.00 3.85
1970 2360 1.059098 TGATGAGCAACACCAGACCT 58.941 50.000 0.00 0.00 0.00 3.85
1971 2361 1.002430 TGATGAGCAACACCAGACCTC 59.998 52.381 0.00 0.00 0.00 3.85
1972 2362 1.002430 GATGAGCAACACCAGACCTCA 59.998 52.381 0.00 0.00 37.01 3.86
1973 2363 1.059098 TGAGCAACACCAGACCTCAT 58.941 50.000 0.00 0.00 0.00 2.90
1974 2364 1.002430 TGAGCAACACCAGACCTCATC 59.998 52.381 0.00 0.00 0.00 2.92
1975 2365 1.002430 GAGCAACACCAGACCTCATCA 59.998 52.381 0.00 0.00 0.00 3.07
1976 2366 1.632409 AGCAACACCAGACCTCATCAT 59.368 47.619 0.00 0.00 0.00 2.45
1977 2367 2.840038 AGCAACACCAGACCTCATCATA 59.160 45.455 0.00 0.00 0.00 2.15
1978 2368 3.457380 AGCAACACCAGACCTCATCATAT 59.543 43.478 0.00 0.00 0.00 1.78
1979 2369 3.812053 GCAACACCAGACCTCATCATATC 59.188 47.826 0.00 0.00 0.00 1.63
1980 2370 4.684214 GCAACACCAGACCTCATCATATCA 60.684 45.833 0.00 0.00 0.00 2.15
1981 2371 5.430886 CAACACCAGACCTCATCATATCAA 58.569 41.667 0.00 0.00 0.00 2.57
1982 2372 5.287674 ACACCAGACCTCATCATATCAAG 57.712 43.478 0.00 0.00 0.00 3.02
1983 2373 4.718774 ACACCAGACCTCATCATATCAAGT 59.281 41.667 0.00 0.00 0.00 3.16
1984 2374 5.899547 ACACCAGACCTCATCATATCAAGTA 59.100 40.000 0.00 0.00 0.00 2.24
1985 2375 6.384015 ACACCAGACCTCATCATATCAAGTAA 59.616 38.462 0.00 0.00 0.00 2.24
1986 2376 7.092891 ACACCAGACCTCATCATATCAAGTAAA 60.093 37.037 0.00 0.00 0.00 2.01
1987 2377 7.225538 CACCAGACCTCATCATATCAAGTAAAC 59.774 40.741 0.00 0.00 0.00 2.01
1988 2378 7.126421 ACCAGACCTCATCATATCAAGTAAACT 59.874 37.037 0.00 0.00 0.00 2.66
1989 2379 7.440556 CCAGACCTCATCATATCAAGTAAACTG 59.559 40.741 0.00 0.00 0.00 3.16
1990 2380 7.984050 CAGACCTCATCATATCAAGTAAACTGT 59.016 37.037 0.00 0.00 0.00 3.55
1991 2381 9.201989 AGACCTCATCATATCAAGTAAACTGTA 57.798 33.333 0.00 0.00 0.00 2.74
1992 2382 9.988815 GACCTCATCATATCAAGTAAACTGTAT 57.011 33.333 0.00 0.00 0.00 2.29
2006 2396 8.575565 AGTAAACTGTATATATGCACTCAACG 57.424 34.615 0.00 0.00 0.00 4.10
2007 2397 8.410912 AGTAAACTGTATATATGCACTCAACGA 58.589 33.333 0.00 0.00 0.00 3.85
2008 2398 9.193133 GTAAACTGTATATATGCACTCAACGAT 57.807 33.333 0.00 0.00 0.00 3.73
2009 2399 7.643528 AACTGTATATATGCACTCAACGATG 57.356 36.000 0.00 0.00 0.00 3.84
2010 2400 6.981722 ACTGTATATATGCACTCAACGATGA 58.018 36.000 0.00 0.00 0.00 2.92
2011 2401 6.863645 ACTGTATATATGCACTCAACGATGAC 59.136 38.462 0.00 0.00 0.00 3.06
2012 2402 5.856455 TGTATATATGCACTCAACGATGACG 59.144 40.000 0.00 0.00 45.75 4.35
2013 2403 2.931512 TATGCACTCAACGATGACGA 57.068 45.000 0.00 0.00 42.66 4.20
2014 2404 2.078849 ATGCACTCAACGATGACGAA 57.921 45.000 0.00 0.00 42.66 3.85
2015 2405 1.859383 TGCACTCAACGATGACGAAA 58.141 45.000 0.00 0.00 42.66 3.46
2016 2406 1.525197 TGCACTCAACGATGACGAAAC 59.475 47.619 0.00 0.00 42.66 2.78
2017 2407 1.525197 GCACTCAACGATGACGAAACA 59.475 47.619 0.00 0.00 42.66 2.83
2018 2408 2.157668 GCACTCAACGATGACGAAACAT 59.842 45.455 0.00 0.00 42.66 2.71
2019 2409 3.366724 GCACTCAACGATGACGAAACATA 59.633 43.478 0.00 0.00 42.66 2.29
2020 2410 4.143200 GCACTCAACGATGACGAAACATAA 60.143 41.667 0.00 0.00 42.66 1.90
2021 2411 5.613795 GCACTCAACGATGACGAAACATAAA 60.614 40.000 0.00 0.00 42.66 1.40
2022 2412 6.534059 CACTCAACGATGACGAAACATAAAT 58.466 36.000 0.00 0.00 42.66 1.40
2023 2413 7.015289 CACTCAACGATGACGAAACATAAATT 58.985 34.615 0.00 0.00 42.66 1.82
2024 2414 7.533900 CACTCAACGATGACGAAACATAAATTT 59.466 33.333 0.00 0.00 42.66 1.82
2025 2415 8.714179 ACTCAACGATGACGAAACATAAATTTA 58.286 29.630 0.00 0.00 42.66 1.40
2026 2416 9.199184 CTCAACGATGACGAAACATAAATTTAG 57.801 33.333 3.94 0.00 42.66 1.85
2027 2417 8.927721 TCAACGATGACGAAACATAAATTTAGA 58.072 29.630 3.94 0.00 42.66 2.10
2028 2418 9.536558 CAACGATGACGAAACATAAATTTAGAA 57.463 29.630 3.94 0.00 42.66 2.10
2030 2420 9.537848 ACGATGACGAAACATAAATTTAGAAAC 57.462 29.630 3.94 0.00 42.66 2.78
2031 2421 9.755064 CGATGACGAAACATAAATTTAGAAACT 57.245 29.630 3.94 0.00 42.66 2.66
2083 2473 9.651913 AAAAGTGTATTGAAAAGTGTTCAATGT 57.348 25.926 25.46 8.87 45.55 2.71
2084 2474 8.633075 AAGTGTATTGAAAAGTGTTCAATGTG 57.367 30.769 25.46 0.00 45.55 3.21
2085 2475 6.697019 AGTGTATTGAAAAGTGTTCAATGTGC 59.303 34.615 25.46 17.12 45.55 4.57
2086 2476 6.475076 GTGTATTGAAAAGTGTTCAATGTGCA 59.525 34.615 25.46 18.90 45.55 4.57
2087 2477 5.971895 ATTGAAAAGTGTTCAATGTGCAC 57.028 34.783 18.64 10.75 44.67 4.57
2088 2478 4.446994 TGAAAAGTGTTCAATGTGCACA 57.553 36.364 24.08 24.08 35.75 4.57
2089 2479 4.814147 TGAAAAGTGTTCAATGTGCACAA 58.186 34.783 25.72 4.24 35.75 3.33
2090 2480 5.233225 TGAAAAGTGTTCAATGTGCACAAA 58.767 33.333 25.72 11.28 35.75 2.83
2091 2481 5.698089 TGAAAAGTGTTCAATGTGCACAAAA 59.302 32.000 25.72 15.45 35.75 2.44
2092 2482 6.203530 TGAAAAGTGTTCAATGTGCACAAAAA 59.796 30.769 25.72 15.09 35.75 1.94
2173 2563 9.539825 AATGTGTACAAAAATGTTTCTAATGCA 57.460 25.926 0.00 0.00 0.00 3.96
2174 2564 9.709495 ATGTGTACAAAAATGTTTCTAATGCAT 57.291 25.926 0.00 0.00 0.00 3.96
2185 2575 9.846248 AATGTTTCTAATGCATACAAAGAAGAC 57.154 29.630 0.00 8.72 34.91 3.01
2186 2576 7.816640 TGTTTCTAATGCATACAAAGAAGACC 58.183 34.615 0.00 1.38 34.91 3.85
2187 2577 7.446931 TGTTTCTAATGCATACAAAGAAGACCA 59.553 33.333 0.00 3.61 34.91 4.02
2188 2578 7.994425 TTCTAATGCATACAAAGAAGACCAA 57.006 32.000 0.00 0.00 31.69 3.67
2189 2579 7.377766 TCTAATGCATACAAAGAAGACCAAC 57.622 36.000 0.00 0.00 0.00 3.77
2190 2580 4.685169 ATGCATACAAAGAAGACCAACG 57.315 40.909 0.00 0.00 0.00 4.10
2191 2581 3.472652 TGCATACAAAGAAGACCAACGT 58.527 40.909 0.00 0.00 0.00 3.99
2192 2582 3.249799 TGCATACAAAGAAGACCAACGTG 59.750 43.478 0.00 0.00 0.00 4.49
2193 2583 3.250040 GCATACAAAGAAGACCAACGTGT 59.750 43.478 0.00 0.00 0.00 4.49
2194 2584 4.261031 GCATACAAAGAAGACCAACGTGTT 60.261 41.667 0.00 0.00 0.00 3.32
2195 2585 3.757745 ACAAAGAAGACCAACGTGTTG 57.242 42.857 5.76 5.76 40.13 3.33
2196 2586 3.340034 ACAAAGAAGACCAACGTGTTGA 58.660 40.909 14.06 0.00 42.93 3.18
2197 2587 3.754323 ACAAAGAAGACCAACGTGTTGAA 59.246 39.130 14.06 0.00 42.93 2.69
2198 2588 4.216687 ACAAAGAAGACCAACGTGTTGAAA 59.783 37.500 14.06 0.00 42.93 2.69
2199 2589 5.157781 CAAAGAAGACCAACGTGTTGAAAA 58.842 37.500 14.06 0.00 42.93 2.29
2200 2590 5.576447 AAGAAGACCAACGTGTTGAAAAT 57.424 34.783 14.06 0.00 42.93 1.82
2201 2591 6.687081 AAGAAGACCAACGTGTTGAAAATA 57.313 33.333 14.06 0.00 42.93 1.40
2202 2592 6.687081 AGAAGACCAACGTGTTGAAAATAA 57.313 33.333 14.06 0.00 42.93 1.40
2203 2593 7.272037 AGAAGACCAACGTGTTGAAAATAAT 57.728 32.000 14.06 0.00 42.93 1.28
2204 2594 8.385898 AGAAGACCAACGTGTTGAAAATAATA 57.614 30.769 14.06 0.00 42.93 0.98
2205 2595 8.842280 AGAAGACCAACGTGTTGAAAATAATAA 58.158 29.630 14.06 0.00 42.93 1.40
2206 2596 9.453325 GAAGACCAACGTGTTGAAAATAATAAA 57.547 29.630 14.06 0.00 42.93 1.40
2207 2597 9.804758 AAGACCAACGTGTTGAAAATAATAAAA 57.195 25.926 14.06 0.00 42.93 1.52
2208 2598 9.974980 AGACCAACGTGTTGAAAATAATAAAAT 57.025 25.926 14.06 0.00 42.93 1.82
2280 2670 9.516546 ACATAGATCATCTTTTGCATATCATGT 57.483 29.630 0.00 0.00 0.00 3.21
2284 2674 9.529325 AGATCATCTTTTGCATATCATGTTTTG 57.471 29.630 0.00 0.00 0.00 2.44
2285 2675 9.309516 GATCATCTTTTGCATATCATGTTTTGT 57.690 29.630 0.00 0.00 0.00 2.83
2286 2676 9.661563 ATCATCTTTTGCATATCATGTTTTGTT 57.338 25.926 0.00 0.00 0.00 2.83
2287 2677 8.927721 TCATCTTTTGCATATCATGTTTTGTTG 58.072 29.630 0.00 0.00 0.00 3.33
2288 2678 7.119605 TCTTTTGCATATCATGTTTTGTTGC 57.880 32.000 0.00 0.00 0.00 4.17
2289 2679 6.704937 TCTTTTGCATATCATGTTTTGTTGCA 59.295 30.769 0.00 0.00 36.09 4.08
2290 2680 7.388224 TCTTTTGCATATCATGTTTTGTTGCAT 59.612 29.630 0.00 0.00 36.99 3.96
2291 2681 7.436430 TTTGCATATCATGTTTTGTTGCATT 57.564 28.000 0.00 0.00 36.99 3.56
2292 2682 7.436430 TTGCATATCATGTTTTGTTGCATTT 57.564 28.000 0.00 0.00 36.99 2.32
2293 2683 7.436430 TGCATATCATGTTTTGTTGCATTTT 57.564 28.000 0.00 0.00 34.38 1.82
2294 2684 7.298854 TGCATATCATGTTTTGTTGCATTTTG 58.701 30.769 0.00 0.00 34.38 2.44
2295 2685 7.172703 TGCATATCATGTTTTGTTGCATTTTGA 59.827 29.630 0.00 0.00 34.38 2.69
2296 2686 7.479291 GCATATCATGTTTTGTTGCATTTTGAC 59.521 33.333 0.00 0.00 31.59 3.18
2297 2687 6.922247 ATCATGTTTTGTTGCATTTTGACA 57.078 29.167 0.00 0.00 0.00 3.58
2298 2688 6.732531 TCATGTTTTGTTGCATTTTGACAA 57.267 29.167 0.00 0.00 0.00 3.18
2299 2689 7.137490 TCATGTTTTGTTGCATTTTGACAAA 57.863 28.000 9.09 9.09 40.39 2.83
2300 2690 7.759465 TCATGTTTTGTTGCATTTTGACAAAT 58.241 26.923 12.96 0.00 41.34 2.32
2301 2691 7.909121 TCATGTTTTGTTGCATTTTGACAAATC 59.091 29.630 12.96 12.51 41.34 2.17
2302 2692 6.549952 TGTTTTGTTGCATTTTGACAAATCC 58.450 32.000 12.96 8.54 41.34 3.01
2303 2693 6.373774 TGTTTTGTTGCATTTTGACAAATCCT 59.626 30.769 12.96 0.00 41.34 3.24
2304 2694 6.601741 TTTGTTGCATTTTGACAAATCCTC 57.398 33.333 9.09 0.00 38.09 3.71
2305 2695 4.297510 TGTTGCATTTTGACAAATCCTCG 58.702 39.130 0.50 0.00 29.41 4.63
2306 2696 4.037327 TGTTGCATTTTGACAAATCCTCGA 59.963 37.500 0.50 0.00 29.41 4.04
2307 2697 5.163513 GTTGCATTTTGACAAATCCTCGAT 58.836 37.500 0.50 0.00 29.41 3.59
2308 2698 6.072230 TGTTGCATTTTGACAAATCCTCGATA 60.072 34.615 0.50 0.00 29.41 2.92
2309 2699 6.507958 TGCATTTTGACAAATCCTCGATAA 57.492 33.333 0.50 0.00 29.41 1.75
2310 2700 6.918626 TGCATTTTGACAAATCCTCGATAAA 58.081 32.000 0.50 0.00 29.41 1.40
2311 2701 7.546358 TGCATTTTGACAAATCCTCGATAAAT 58.454 30.769 0.50 0.00 29.41 1.40
2312 2702 7.701924 TGCATTTTGACAAATCCTCGATAAATC 59.298 33.333 0.50 0.00 29.41 2.17
2313 2703 7.168135 GCATTTTGACAAATCCTCGATAAATCC 59.832 37.037 0.50 0.00 29.41 3.01
2314 2704 7.938140 TTTTGACAAATCCTCGATAAATCCT 57.062 32.000 0.50 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.147302 ACAGGGAATATATATACCATTCCAGGC 60.147 40.741 25.41 15.58 46.37 4.85
116 117 0.329596 GAGGGAAGGCACCAATCAGT 59.670 55.000 3.41 0.00 0.00 3.41
143 152 8.647796 TGAAGAACTACTTGATTCCTCAACTAA 58.352 33.333 0.00 0.00 39.13 2.24
170 179 6.039829 GGAATGAAAGAACCAACTCTCAACTT 59.960 38.462 0.00 0.00 0.00 2.66
183 192 8.884726 GGAGTAACTATGAAGGAATGAAAGAAC 58.115 37.037 0.00 0.00 0.00 3.01
185 194 7.403231 AGGGAGTAACTATGAAGGAATGAAAGA 59.597 37.037 0.00 0.00 0.00 2.52
213 222 8.548721 GTCAAAACACTCTTATATTATGGGACG 58.451 37.037 0.00 0.00 0.00 4.79
245 255 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
248 258 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
249 259 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
250 260 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
251 261 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
252 262 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
253 263 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
254 264 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
255 265 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
278 288 6.070710 ACAACTCTTACTGAAATACTCCCTCC 60.071 42.308 0.00 0.00 0.00 4.30
409 419 7.275183 ACGTCATCTCATAAAGGATGAAATGA 58.725 34.615 7.12 0.47 45.71 2.57
467 477 8.773645 TCGATTATTTTCAGAACATCGCAATAT 58.226 29.630 7.77 0.00 34.79 1.28
469 479 7.015226 TCGATTATTTTCAGAACATCGCAAT 57.985 32.000 7.77 0.00 34.79 3.56
514 524 7.728148 TGCAAGTACCGAGAATTTGGTATATA 58.272 34.615 8.01 0.00 43.66 0.86
515 525 6.588204 TGCAAGTACCGAGAATTTGGTATAT 58.412 36.000 8.01 0.35 43.66 0.86
516 526 5.979993 TGCAAGTACCGAGAATTTGGTATA 58.020 37.500 8.01 0.00 43.66 1.47
517 527 4.839121 TGCAAGTACCGAGAATTTGGTAT 58.161 39.130 8.01 0.00 43.66 2.73
518 528 4.250464 CTGCAAGTACCGAGAATTTGGTA 58.750 43.478 0.00 2.14 41.55 3.25
519 529 3.074412 CTGCAAGTACCGAGAATTTGGT 58.926 45.455 0.00 3.82 43.78 3.67
520 530 2.159517 GCTGCAAGTACCGAGAATTTGG 60.160 50.000 0.00 0.00 35.30 3.28
521 531 2.483877 TGCTGCAAGTACCGAGAATTTG 59.516 45.455 0.00 0.00 35.30 2.32
522 532 2.778299 TGCTGCAAGTACCGAGAATTT 58.222 42.857 0.00 0.00 35.30 1.82
523 533 2.472695 TGCTGCAAGTACCGAGAATT 57.527 45.000 0.00 0.00 35.30 2.17
524 534 2.093500 TCATGCTGCAAGTACCGAGAAT 60.093 45.455 6.36 0.00 35.30 2.40
525 535 1.275010 TCATGCTGCAAGTACCGAGAA 59.725 47.619 6.36 0.00 35.30 2.87
526 536 0.894835 TCATGCTGCAAGTACCGAGA 59.105 50.000 6.36 0.00 35.30 4.04
527 537 1.863454 GATCATGCTGCAAGTACCGAG 59.137 52.381 6.36 0.00 35.30 4.63
528 538 1.206849 TGATCATGCTGCAAGTACCGA 59.793 47.619 6.36 0.00 35.30 4.69
529 539 1.655484 TGATCATGCTGCAAGTACCG 58.345 50.000 6.36 0.00 35.30 4.02
530 540 2.222678 CGATGATCATGCTGCAAGTACC 59.777 50.000 14.30 0.00 35.30 3.34
531 541 2.868583 ACGATGATCATGCTGCAAGTAC 59.131 45.455 14.30 1.96 35.30 2.73
532 542 3.183793 ACGATGATCATGCTGCAAGTA 57.816 42.857 14.30 0.00 35.30 2.24
533 543 2.034104 ACGATGATCATGCTGCAAGT 57.966 45.000 14.30 0.00 35.30 3.16
534 544 4.744136 ATAACGATGATCATGCTGCAAG 57.256 40.909 14.30 1.39 0.00 4.01
535 545 5.503662 AAATAACGATGATCATGCTGCAA 57.496 34.783 14.30 0.00 0.00 4.08
536 546 5.503662 AAAATAACGATGATCATGCTGCA 57.496 34.783 14.30 4.13 0.00 4.41
556 566 6.358558 CAGAAAATTGAGCGCTTACGTAAAAA 59.641 34.615 13.26 0.00 42.83 1.94
557 567 5.849081 CAGAAAATTGAGCGCTTACGTAAAA 59.151 36.000 13.26 0.00 42.83 1.52
558 568 5.177881 TCAGAAAATTGAGCGCTTACGTAAA 59.822 36.000 13.26 0.00 42.83 2.01
559 569 4.687018 TCAGAAAATTGAGCGCTTACGTAA 59.313 37.500 13.26 7.94 42.83 3.18
560 570 4.239304 TCAGAAAATTGAGCGCTTACGTA 58.761 39.130 13.26 0.00 42.83 3.57
561 571 3.064207 TCAGAAAATTGAGCGCTTACGT 58.936 40.909 13.26 0.00 42.83 3.57
562 572 3.722555 TCAGAAAATTGAGCGCTTACG 57.277 42.857 13.26 0.00 44.07 3.18
563 573 5.221891 TCATCAGAAAATTGAGCGCTTAC 57.778 39.130 13.26 0.00 0.00 2.34
564 574 5.391950 GGTTCATCAGAAAATTGAGCGCTTA 60.392 40.000 13.26 3.74 35.08 3.09
565 575 4.479619 GTTCATCAGAAAATTGAGCGCTT 58.520 39.130 13.26 0.00 35.08 4.68
566 576 3.119708 GGTTCATCAGAAAATTGAGCGCT 60.120 43.478 11.27 11.27 35.08 5.92
567 577 3.119708 AGGTTCATCAGAAAATTGAGCGC 60.120 43.478 0.00 0.00 35.08 5.92
568 578 4.691860 AGGTTCATCAGAAAATTGAGCG 57.308 40.909 0.00 0.00 35.08 5.03
569 579 6.264841 AGAAGGTTCATCAGAAAATTGAGC 57.735 37.500 0.00 0.00 35.08 4.26
570 580 8.619546 GGATAGAAGGTTCATCAGAAAATTGAG 58.380 37.037 0.00 0.00 35.08 3.02
571 581 8.331740 AGGATAGAAGGTTCATCAGAAAATTGA 58.668 33.333 0.00 0.00 35.08 2.57
572 582 8.517062 AGGATAGAAGGTTCATCAGAAAATTG 57.483 34.615 0.00 0.00 35.08 2.32
573 583 7.777440 GGAGGATAGAAGGTTCATCAGAAAATT 59.223 37.037 0.00 0.00 35.08 1.82
574 584 7.128573 AGGAGGATAGAAGGTTCATCAGAAAAT 59.871 37.037 0.00 0.00 35.08 1.82
575 585 6.445139 AGGAGGATAGAAGGTTCATCAGAAAA 59.555 38.462 0.00 0.00 35.08 2.29
576 586 5.966935 AGGAGGATAGAAGGTTCATCAGAAA 59.033 40.000 0.00 0.00 35.08 2.52
577 587 5.533112 AGGAGGATAGAAGGTTCATCAGAA 58.467 41.667 0.00 0.00 0.00 3.02
578 588 5.149584 AGGAGGATAGAAGGTTCATCAGA 57.850 43.478 0.00 0.00 0.00 3.27
579 589 5.885449 AAGGAGGATAGAAGGTTCATCAG 57.115 43.478 0.00 0.00 0.00 2.90
580 590 5.104360 CCAAAGGAGGATAGAAGGTTCATCA 60.104 44.000 0.00 0.00 0.00 3.07
581 591 5.104318 ACCAAAGGAGGATAGAAGGTTCATC 60.104 44.000 0.00 0.00 0.00 2.92
582 592 4.790790 ACCAAAGGAGGATAGAAGGTTCAT 59.209 41.667 0.00 0.00 0.00 2.57
583 593 4.175962 ACCAAAGGAGGATAGAAGGTTCA 58.824 43.478 0.00 0.00 0.00 3.18
584 594 4.846168 ACCAAAGGAGGATAGAAGGTTC 57.154 45.455 0.00 0.00 0.00 3.62
585 595 6.030082 TCTAACCAAAGGAGGATAGAAGGTT 58.970 40.000 0.00 0.00 39.30 3.50
586 596 5.600749 TCTAACCAAAGGAGGATAGAAGGT 58.399 41.667 0.00 0.00 39.30 3.50
587 597 5.900123 TCTCTAACCAAAGGAGGATAGAAGG 59.100 44.000 0.00 0.00 40.96 3.46
588 598 7.610580 ATCTCTAACCAAAGGAGGATAGAAG 57.389 40.000 0.00 0.00 40.96 2.85
589 599 9.676129 ATTATCTCTAACCAAAGGAGGATAGAA 57.324 33.333 0.00 0.00 40.96 2.10
618 628 9.125026 CCAAATAGAGTTCATAACTGCCTAATT 57.875 33.333 0.00 0.00 43.03 1.40
619 629 8.275040 ACCAAATAGAGTTCATAACTGCCTAAT 58.725 33.333 0.00 0.00 43.03 1.73
620 630 7.552687 CACCAAATAGAGTTCATAACTGCCTAA 59.447 37.037 0.00 0.00 43.03 2.69
621 631 7.047891 CACCAAATAGAGTTCATAACTGCCTA 58.952 38.462 0.00 0.00 43.03 3.93
622 632 5.882557 CACCAAATAGAGTTCATAACTGCCT 59.117 40.000 0.00 0.00 43.03 4.75
623 633 5.066505 CCACCAAATAGAGTTCATAACTGCC 59.933 44.000 0.00 0.00 43.03 4.85
624 634 5.648092 ACCACCAAATAGAGTTCATAACTGC 59.352 40.000 0.00 0.00 43.03 4.40
625 635 7.530010 CAACCACCAAATAGAGTTCATAACTG 58.470 38.462 0.00 0.00 43.03 3.16
626 636 6.151144 GCAACCACCAAATAGAGTTCATAACT 59.849 38.462 0.00 0.00 46.38 2.24
627 637 6.151144 AGCAACCACCAAATAGAGTTCATAAC 59.849 38.462 0.00 0.00 0.00 1.89
628 638 6.245408 AGCAACCACCAAATAGAGTTCATAA 58.755 36.000 0.00 0.00 0.00 1.90
629 639 5.815581 AGCAACCACCAAATAGAGTTCATA 58.184 37.500 0.00 0.00 0.00 2.15
630 640 4.666512 AGCAACCACCAAATAGAGTTCAT 58.333 39.130 0.00 0.00 0.00 2.57
631 641 4.072131 GAGCAACCACCAAATAGAGTTCA 58.928 43.478 0.00 0.00 0.00 3.18
632 642 3.440522 GGAGCAACCACCAAATAGAGTTC 59.559 47.826 0.00 0.00 38.79 3.01
633 643 3.421844 GGAGCAACCACCAAATAGAGTT 58.578 45.455 0.00 0.00 38.79 3.01
634 644 2.290960 GGGAGCAACCACCAAATAGAGT 60.291 50.000 2.58 0.00 41.20 3.24
635 645 2.290896 TGGGAGCAACCACCAAATAGAG 60.291 50.000 0.00 0.00 41.20 2.43
636 646 1.707989 TGGGAGCAACCACCAAATAGA 59.292 47.619 0.00 0.00 41.20 1.98
637 647 2.214376 TGGGAGCAACCACCAAATAG 57.786 50.000 0.00 0.00 41.20 1.73
638 648 2.311542 AGATGGGAGCAACCACCAAATA 59.688 45.455 1.10 0.00 44.72 1.40
639 649 1.077663 AGATGGGAGCAACCACCAAAT 59.922 47.619 1.10 0.00 44.72 2.32
640 650 0.482446 AGATGGGAGCAACCACCAAA 59.518 50.000 1.10 0.00 44.72 3.28
641 651 0.482446 AAGATGGGAGCAACCACCAA 59.518 50.000 1.10 0.00 44.72 3.67
642 652 0.482446 AAAGATGGGAGCAACCACCA 59.518 50.000 1.10 0.00 44.72 4.17
643 653 0.890683 CAAAGATGGGAGCAACCACC 59.109 55.000 1.10 0.00 44.72 4.61
644 654 1.909700 TCAAAGATGGGAGCAACCAC 58.090 50.000 1.10 0.00 44.72 4.16
645 655 2.905415 ATCAAAGATGGGAGCAACCA 57.095 45.000 1.61 1.61 46.24 3.67
646 656 3.891049 ACTATCAAAGATGGGAGCAACC 58.109 45.455 0.00 0.00 38.08 3.77
647 657 4.943705 TCAACTATCAAAGATGGGAGCAAC 59.056 41.667 0.00 0.00 0.00 4.17
648 658 5.178096 TCAACTATCAAAGATGGGAGCAA 57.822 39.130 0.00 0.00 0.00 3.91
649 659 4.384537 CCTCAACTATCAAAGATGGGAGCA 60.385 45.833 0.00 0.00 29.99 4.26
650 660 4.133078 CCTCAACTATCAAAGATGGGAGC 58.867 47.826 0.00 0.00 29.99 4.70
651 661 5.620738 TCCTCAACTATCAAAGATGGGAG 57.379 43.478 0.00 0.00 29.99 4.30
652 662 6.387192 TTTCCTCAACTATCAAAGATGGGA 57.613 37.500 0.00 0.00 29.99 4.37
661 671 6.377429 AGTCGTACTCATTTCCTCAACTATCA 59.623 38.462 0.00 0.00 0.00 2.15
662 672 6.797454 AGTCGTACTCATTTCCTCAACTATC 58.203 40.000 0.00 0.00 0.00 2.08
668 678 4.765339 TCTGAAGTCGTACTCATTTCCTCA 59.235 41.667 0.00 0.00 0.00 3.86
675 685 6.151985 ACTCTGAATTCTGAAGTCGTACTCAT 59.848 38.462 14.97 0.00 0.00 2.90
676 686 5.473846 ACTCTGAATTCTGAAGTCGTACTCA 59.526 40.000 14.97 0.00 0.00 3.41
682 692 3.993081 AGCAACTCTGAATTCTGAAGTCG 59.007 43.478 14.97 8.00 0.00 4.18
684 694 4.712476 ACAGCAACTCTGAATTCTGAAGT 58.288 39.130 14.97 12.06 45.72 3.01
692 702 6.645790 AGAATGAAAACAGCAACTCTGAAT 57.354 33.333 0.00 0.00 45.72 2.57
740 1104 7.692460 TCTCACAAAGAATGAAATGTATGCT 57.308 32.000 0.00 0.00 0.00 3.79
779 1151 8.332996 AGATTCGGTACAATATACACGAGTAT 57.667 34.615 10.40 10.40 43.23 2.12
889 1262 6.741992 TGAGCACTAATGTAATGAAACAGG 57.258 37.500 0.00 0.00 31.70 4.00
890 1263 9.630098 AAATTGAGCACTAATGTAATGAAACAG 57.370 29.630 0.00 0.00 31.70 3.16
1227 1600 1.339151 CCCTTGTACACTTCTGGAGGC 60.339 57.143 0.00 0.00 0.00 4.70
1324 1697 3.277142 AGTCGAATGGGGATGTTTACC 57.723 47.619 0.00 0.00 0.00 2.85
1331 1704 2.683768 AGCTAGAAGTCGAATGGGGAT 58.316 47.619 0.00 0.00 0.00 3.85
1340 1713 4.474113 ACGTCTTAACAAGCTAGAAGTCG 58.526 43.478 0.00 11.78 36.80 4.18
1362 1738 1.501292 CACCACAAATGCGATGCGA 59.499 52.632 0.00 0.00 0.00 5.10
1418 1798 2.842936 CCCGGTACTGGGGCTAGG 60.843 72.222 29.96 4.94 46.17 3.02
1433 1813 6.534079 CGGAGTATTATTACGAAATCCATCCC 59.466 42.308 0.00 0.00 33.32 3.85
1587 1972 8.445275 AAGTAGTGACATCAACAAACACATTA 57.555 30.769 0.00 0.00 34.47 1.90
1727 2114 9.781834 CAAAACCGCTATCACATAATCTAAAAA 57.218 29.630 0.00 0.00 0.00 1.94
1728 2115 7.913297 GCAAAACCGCTATCACATAATCTAAAA 59.087 33.333 0.00 0.00 0.00 1.52
1729 2116 7.282224 AGCAAAACCGCTATCACATAATCTAAA 59.718 33.333 0.00 0.00 41.55 1.85
1730 2117 6.765989 AGCAAAACCGCTATCACATAATCTAA 59.234 34.615 0.00 0.00 41.55 2.10
1731 2118 6.202762 CAGCAAAACCGCTATCACATAATCTA 59.797 38.462 0.00 0.00 41.38 1.98
1732 2119 5.008019 CAGCAAAACCGCTATCACATAATCT 59.992 40.000 0.00 0.00 41.38 2.40
1733 2120 5.007626 TCAGCAAAACCGCTATCACATAATC 59.992 40.000 0.00 0.00 41.38 1.75
1734 2121 4.881273 TCAGCAAAACCGCTATCACATAAT 59.119 37.500 0.00 0.00 41.38 1.28
1735 2122 4.257731 TCAGCAAAACCGCTATCACATAA 58.742 39.130 0.00 0.00 41.38 1.90
1736 2123 3.867857 TCAGCAAAACCGCTATCACATA 58.132 40.909 0.00 0.00 41.38 2.29
1737 2124 2.710377 TCAGCAAAACCGCTATCACAT 58.290 42.857 0.00 0.00 41.38 3.21
1738 2125 2.177394 TCAGCAAAACCGCTATCACA 57.823 45.000 0.00 0.00 41.38 3.58
1739 2126 2.729156 GCTTCAGCAAAACCGCTATCAC 60.729 50.000 0.00 0.00 41.38 3.06
1740 2127 1.468520 GCTTCAGCAAAACCGCTATCA 59.531 47.619 0.00 0.00 41.38 2.15
1741 2128 1.740025 AGCTTCAGCAAAACCGCTATC 59.260 47.619 0.75 0.00 41.38 2.08
1742 2129 1.470098 CAGCTTCAGCAAAACCGCTAT 59.530 47.619 0.75 0.00 41.38 2.97
1743 2130 0.874390 CAGCTTCAGCAAAACCGCTA 59.126 50.000 0.75 0.00 41.38 4.26
1744 2131 1.656441 CAGCTTCAGCAAAACCGCT 59.344 52.632 0.75 0.00 45.21 5.52
1745 2132 2.018324 GCAGCTTCAGCAAAACCGC 61.018 57.895 0.75 0.00 45.16 5.68
1746 2133 0.662374 CAGCAGCTTCAGCAAAACCG 60.662 55.000 0.75 0.00 45.16 4.44
1813 2200 4.326504 AAAATGTTGTGGGCTCTTTCTG 57.673 40.909 0.00 0.00 0.00 3.02
1839 2229 3.493699 GCACGGGCATTGACCTATAAGTA 60.494 47.826 3.77 0.00 40.72 2.24
1870 2260 6.367421 TGGAATATTTATATCGCGTTGCAAC 58.633 36.000 19.89 19.89 0.00 4.17
1871 2261 6.203915 ACTGGAATATTTATATCGCGTTGCAA 59.796 34.615 5.77 0.00 0.00 4.08
1872 2262 5.699001 ACTGGAATATTTATATCGCGTTGCA 59.301 36.000 5.77 0.00 0.00 4.08
1873 2263 6.165659 ACTGGAATATTTATATCGCGTTGC 57.834 37.500 5.77 0.00 0.00 4.17
1874 2264 9.083080 TCATACTGGAATATTTATATCGCGTTG 57.917 33.333 5.77 0.00 0.00 4.10
1875 2265 9.084164 GTCATACTGGAATATTTATATCGCGTT 57.916 33.333 5.77 0.00 0.00 4.84
1876 2266 8.248253 TGTCATACTGGAATATTTATATCGCGT 58.752 33.333 5.77 0.00 0.00 6.01
1877 2267 8.628882 TGTCATACTGGAATATTTATATCGCG 57.371 34.615 0.00 0.00 0.00 5.87
1922 2312 8.565896 TCATATCGGCTTGATGCTATATTTTT 57.434 30.769 2.76 0.00 42.39 1.94
1923 2313 8.743085 ATCATATCGGCTTGATGCTATATTTT 57.257 30.769 2.76 0.00 42.39 1.82
1924 2314 7.989170 TGATCATATCGGCTTGATGCTATATTT 59.011 33.333 0.00 0.00 42.39 1.40
1925 2315 7.503549 TGATCATATCGGCTTGATGCTATATT 58.496 34.615 0.00 0.00 42.39 1.28
1926 2316 7.059202 TGATCATATCGGCTTGATGCTATAT 57.941 36.000 0.00 0.00 42.39 0.86
1927 2317 6.469782 TGATCATATCGGCTTGATGCTATA 57.530 37.500 0.00 0.00 42.39 1.31
1928 2318 5.349061 TGATCATATCGGCTTGATGCTAT 57.651 39.130 0.00 0.00 42.39 2.97
1929 2319 4.806640 TGATCATATCGGCTTGATGCTA 57.193 40.909 0.00 0.00 42.39 3.49
1930 2320 3.690475 TGATCATATCGGCTTGATGCT 57.310 42.857 0.00 0.00 42.39 3.79
1931 2321 3.937079 TCATGATCATATCGGCTTGATGC 59.063 43.478 8.15 0.00 37.99 3.91
1932 2322 5.815740 TCATCATGATCATATCGGCTTGATG 59.184 40.000 18.97 18.97 37.99 3.07
1933 2323 5.985911 TCATCATGATCATATCGGCTTGAT 58.014 37.500 8.15 3.11 41.30 2.57
1934 2324 5.410355 TCATCATGATCATATCGGCTTGA 57.590 39.130 8.15 0.49 0.00 3.02
1935 2325 4.034163 GCTCATCATGATCATATCGGCTTG 59.966 45.833 8.15 0.00 0.00 4.01
1936 2326 4.190001 GCTCATCATGATCATATCGGCTT 58.810 43.478 8.15 0.00 0.00 4.35
1937 2327 3.197116 TGCTCATCATGATCATATCGGCT 59.803 43.478 8.15 0.00 0.00 5.52
1938 2328 3.528532 TGCTCATCATGATCATATCGGC 58.471 45.455 8.15 9.82 0.00 5.54
1939 2329 4.933400 TGTTGCTCATCATGATCATATCGG 59.067 41.667 8.15 0.00 0.00 4.18
1940 2330 5.163884 GGTGTTGCTCATCATGATCATATCG 60.164 44.000 8.15 0.00 0.00 2.92
1941 2331 5.704053 TGGTGTTGCTCATCATGATCATATC 59.296 40.000 8.15 0.00 31.53 1.63
1942 2332 5.627135 TGGTGTTGCTCATCATGATCATAT 58.373 37.500 8.15 0.12 31.53 1.78
1943 2333 5.038651 TGGTGTTGCTCATCATGATCATA 57.961 39.130 8.15 0.00 31.53 2.15
1944 2334 3.883489 CTGGTGTTGCTCATCATGATCAT 59.117 43.478 4.86 1.18 36.50 2.45
1945 2335 3.054948 TCTGGTGTTGCTCATCATGATCA 60.055 43.478 4.86 0.00 36.50 2.92
1946 2336 3.311871 GTCTGGTGTTGCTCATCATGATC 59.688 47.826 4.86 0.00 36.50 2.92
1947 2337 3.276857 GTCTGGTGTTGCTCATCATGAT 58.723 45.455 1.18 1.18 36.50 2.45
1948 2338 2.616256 GGTCTGGTGTTGCTCATCATGA 60.616 50.000 0.00 0.00 36.50 3.07
1949 2339 1.741706 GGTCTGGTGTTGCTCATCATG 59.258 52.381 0.00 0.00 36.50 3.07
1950 2340 1.632409 AGGTCTGGTGTTGCTCATCAT 59.368 47.619 0.00 0.00 36.50 2.45
1951 2341 1.002430 GAGGTCTGGTGTTGCTCATCA 59.998 52.381 0.00 0.00 35.67 3.07
1952 2342 1.002430 TGAGGTCTGGTGTTGCTCATC 59.998 52.381 0.00 0.00 0.00 2.92
1953 2343 1.059098 TGAGGTCTGGTGTTGCTCAT 58.941 50.000 0.00 0.00 0.00 2.90
1954 2344 1.002430 GATGAGGTCTGGTGTTGCTCA 59.998 52.381 0.00 0.00 0.00 4.26
1955 2345 1.002430 TGATGAGGTCTGGTGTTGCTC 59.998 52.381 0.00 0.00 0.00 4.26
1956 2346 1.059098 TGATGAGGTCTGGTGTTGCT 58.941 50.000 0.00 0.00 0.00 3.91
1957 2347 2.119801 ATGATGAGGTCTGGTGTTGC 57.880 50.000 0.00 0.00 0.00 4.17
1958 2348 5.027293 TGATATGATGAGGTCTGGTGTTG 57.973 43.478 0.00 0.00 0.00 3.33
1959 2349 5.190528 ACTTGATATGATGAGGTCTGGTGTT 59.809 40.000 0.00 0.00 0.00 3.32
1960 2350 4.718774 ACTTGATATGATGAGGTCTGGTGT 59.281 41.667 0.00 0.00 0.00 4.16
1961 2351 5.287674 ACTTGATATGATGAGGTCTGGTG 57.712 43.478 0.00 0.00 0.00 4.17
1962 2352 7.126421 AGTTTACTTGATATGATGAGGTCTGGT 59.874 37.037 0.00 0.00 0.00 4.00
1963 2353 7.440556 CAGTTTACTTGATATGATGAGGTCTGG 59.559 40.741 0.00 0.00 0.00 3.86
1964 2354 7.984050 ACAGTTTACTTGATATGATGAGGTCTG 59.016 37.037 0.00 0.00 0.00 3.51
1965 2355 8.083828 ACAGTTTACTTGATATGATGAGGTCT 57.916 34.615 0.00 0.00 0.00 3.85
1966 2356 9.988815 ATACAGTTTACTTGATATGATGAGGTC 57.011 33.333 0.00 0.00 0.00 3.85
1980 2370 9.031360 CGTTGAGTGCATATATACAGTTTACTT 57.969 33.333 0.00 0.00 0.00 2.24
1981 2371 8.410912 TCGTTGAGTGCATATATACAGTTTACT 58.589 33.333 0.00 0.00 0.00 2.24
1982 2372 8.570096 TCGTTGAGTGCATATATACAGTTTAC 57.430 34.615 0.00 0.00 0.00 2.01
1983 2373 9.191995 CATCGTTGAGTGCATATATACAGTTTA 57.808 33.333 0.00 0.00 0.00 2.01
1984 2374 7.926018 TCATCGTTGAGTGCATATATACAGTTT 59.074 33.333 0.00 0.00 0.00 2.66
1985 2375 7.382488 GTCATCGTTGAGTGCATATATACAGTT 59.618 37.037 0.00 0.00 30.85 3.16
1986 2376 6.863645 GTCATCGTTGAGTGCATATATACAGT 59.136 38.462 0.00 0.00 30.85 3.55
1987 2377 6.032880 CGTCATCGTTGAGTGCATATATACAG 59.967 42.308 0.00 0.00 30.85 2.74
1988 2378 5.856455 CGTCATCGTTGAGTGCATATATACA 59.144 40.000 0.00 0.00 30.85 2.29
1989 2379 6.084277 TCGTCATCGTTGAGTGCATATATAC 58.916 40.000 0.00 0.00 38.33 1.47
1990 2380 6.249035 TCGTCATCGTTGAGTGCATATATA 57.751 37.500 0.00 0.00 38.33 0.86
1991 2381 5.121221 TCGTCATCGTTGAGTGCATATAT 57.879 39.130 0.00 0.00 38.33 0.86
1992 2382 4.561735 TCGTCATCGTTGAGTGCATATA 57.438 40.909 0.00 0.00 38.33 0.86
1993 2383 3.436700 TCGTCATCGTTGAGTGCATAT 57.563 42.857 0.00 0.00 38.33 1.78
1994 2384 2.931512 TCGTCATCGTTGAGTGCATA 57.068 45.000 0.00 0.00 38.33 3.14
1995 2385 2.078849 TTCGTCATCGTTGAGTGCAT 57.921 45.000 0.00 0.00 38.33 3.96
1996 2386 1.525197 GTTTCGTCATCGTTGAGTGCA 59.475 47.619 0.00 0.00 38.33 4.57
1997 2387 1.525197 TGTTTCGTCATCGTTGAGTGC 59.475 47.619 0.00 0.00 38.33 4.40
1998 2388 5.509605 TTATGTTTCGTCATCGTTGAGTG 57.490 39.130 0.00 0.00 38.33 3.51
1999 2389 6.721571 ATTTATGTTTCGTCATCGTTGAGT 57.278 33.333 0.00 0.00 38.33 3.41
2000 2390 9.199184 CTAAATTTATGTTTCGTCATCGTTGAG 57.801 33.333 0.00 0.00 38.33 3.02
2001 2391 8.927721 TCTAAATTTATGTTTCGTCATCGTTGA 58.072 29.630 0.00 0.00 38.33 3.18
2002 2392 9.536558 TTCTAAATTTATGTTTCGTCATCGTTG 57.463 29.630 0.00 0.00 38.33 4.10
2004 2394 9.537848 GTTTCTAAATTTATGTTTCGTCATCGT 57.462 29.630 0.00 0.00 38.33 3.73
2005 2395 9.755064 AGTTTCTAAATTTATGTTTCGTCATCG 57.245 29.630 0.00 0.00 38.55 3.84
2057 2447 9.651913 ACATTGAACACTTTTCAATACACTTTT 57.348 25.926 10.99 0.00 44.60 2.27
2058 2448 9.086336 CACATTGAACACTTTTCAATACACTTT 57.914 29.630 10.99 0.00 44.60 2.66
2059 2449 7.222611 GCACATTGAACACTTTTCAATACACTT 59.777 33.333 10.99 0.00 44.60 3.16
2060 2450 6.697019 GCACATTGAACACTTTTCAATACACT 59.303 34.615 10.99 0.00 44.60 3.55
2061 2451 6.475076 TGCACATTGAACACTTTTCAATACAC 59.525 34.615 10.99 5.46 44.60 2.90
2062 2452 6.475076 GTGCACATTGAACACTTTTCAATACA 59.525 34.615 13.17 7.99 44.60 2.29
2063 2453 6.475076 TGTGCACATTGAACACTTTTCAATAC 59.525 34.615 17.42 7.38 44.60 1.89
2064 2454 6.567959 TGTGCACATTGAACACTTTTCAATA 58.432 32.000 17.42 0.00 44.60 1.90
2065 2455 5.417811 TGTGCACATTGAACACTTTTCAAT 58.582 33.333 17.42 6.44 46.59 2.57
2066 2456 4.814147 TGTGCACATTGAACACTTTTCAA 58.186 34.783 17.42 2.11 41.91 2.69
2067 2457 4.446994 TGTGCACATTGAACACTTTTCA 57.553 36.364 17.42 0.00 35.33 2.69
2068 2458 5.776519 TTTGTGCACATTGAACACTTTTC 57.223 34.783 22.39 0.00 35.33 2.29
2069 2459 6.551385 TTTTTGTGCACATTGAACACTTTT 57.449 29.167 22.39 0.00 35.33 2.27
2147 2537 9.539825 TGCATTAGAAACATTTTTGTACACATT 57.460 25.926 0.00 0.00 0.00 2.71
2148 2538 9.709495 ATGCATTAGAAACATTTTTGTACACAT 57.291 25.926 0.00 0.00 0.00 3.21
2159 2549 9.846248 GTCTTCTTTGTATGCATTAGAAACATT 57.154 29.630 3.54 0.00 30.53 2.71
2160 2550 8.462016 GGTCTTCTTTGTATGCATTAGAAACAT 58.538 33.333 3.54 0.00 30.53 2.71
2161 2551 7.446931 TGGTCTTCTTTGTATGCATTAGAAACA 59.553 33.333 3.54 0.00 30.53 2.83
2162 2552 7.816640 TGGTCTTCTTTGTATGCATTAGAAAC 58.183 34.615 3.54 0.00 30.53 2.78
2163 2553 7.994425 TGGTCTTCTTTGTATGCATTAGAAA 57.006 32.000 3.54 0.91 30.53 2.52
2164 2554 7.360861 CGTTGGTCTTCTTTGTATGCATTAGAA 60.361 37.037 3.54 8.55 0.00 2.10
2165 2555 6.092122 CGTTGGTCTTCTTTGTATGCATTAGA 59.908 38.462 3.54 0.31 0.00 2.10
2166 2556 6.128282 ACGTTGGTCTTCTTTGTATGCATTAG 60.128 38.462 3.54 0.00 0.00 1.73
2167 2557 5.703592 ACGTTGGTCTTCTTTGTATGCATTA 59.296 36.000 3.54 0.00 0.00 1.90
2168 2558 4.518970 ACGTTGGTCTTCTTTGTATGCATT 59.481 37.500 3.54 0.00 0.00 3.56
2169 2559 4.072131 ACGTTGGTCTTCTTTGTATGCAT 58.928 39.130 3.79 3.79 0.00 3.96
2170 2560 3.249799 CACGTTGGTCTTCTTTGTATGCA 59.750 43.478 0.00 0.00 0.00 3.96
2171 2561 3.250040 ACACGTTGGTCTTCTTTGTATGC 59.750 43.478 0.00 0.00 0.00 3.14
2172 2562 5.007234 TCAACACGTTGGTCTTCTTTGTATG 59.993 40.000 9.90 0.00 40.78 2.39
2173 2563 5.120399 TCAACACGTTGGTCTTCTTTGTAT 58.880 37.500 9.90 0.00 40.78 2.29
2174 2564 4.505808 TCAACACGTTGGTCTTCTTTGTA 58.494 39.130 9.90 0.00 40.78 2.41
2175 2565 3.340034 TCAACACGTTGGTCTTCTTTGT 58.660 40.909 9.90 0.00 40.78 2.83
2176 2566 4.349663 TTCAACACGTTGGTCTTCTTTG 57.650 40.909 9.90 0.00 40.78 2.77
2177 2567 5.379732 TTTTCAACACGTTGGTCTTCTTT 57.620 34.783 9.90 0.00 40.78 2.52
2178 2568 5.576447 ATTTTCAACACGTTGGTCTTCTT 57.424 34.783 9.90 0.00 40.78 2.52
2179 2569 6.687081 TTATTTTCAACACGTTGGTCTTCT 57.313 33.333 9.90 0.00 40.78 2.85
2180 2570 9.453325 TTTATTATTTTCAACACGTTGGTCTTC 57.547 29.630 9.90 0.00 40.78 2.87
2181 2571 9.804758 TTTTATTATTTTCAACACGTTGGTCTT 57.195 25.926 9.90 0.00 40.78 3.01
2182 2572 9.974980 ATTTTATTATTTTCAACACGTTGGTCT 57.025 25.926 9.90 0.00 40.78 3.85
2254 2644 9.516546 ACATGATATGCAAAAGATGATCTATGT 57.483 29.630 0.00 0.00 0.00 2.29
2258 2648 9.529325 CAAAACATGATATGCAAAAGATGATCT 57.471 29.630 0.00 0.00 0.00 2.75
2259 2649 9.309516 ACAAAACATGATATGCAAAAGATGATC 57.690 29.630 0.00 0.00 0.00 2.92
2260 2650 9.661563 AACAAAACATGATATGCAAAAGATGAT 57.338 25.926 0.00 0.00 0.00 2.45
2261 2651 8.927721 CAACAAAACATGATATGCAAAAGATGA 58.072 29.630 0.00 0.00 0.00 2.92
2262 2652 7.690637 GCAACAAAACATGATATGCAAAAGATG 59.309 33.333 0.00 0.00 36.96 2.90
2263 2653 7.388224 TGCAACAAAACATGATATGCAAAAGAT 59.612 29.630 0.00 0.00 40.70 2.40
2264 2654 6.704937 TGCAACAAAACATGATATGCAAAAGA 59.295 30.769 0.00 0.00 40.70 2.52
2265 2655 6.889494 TGCAACAAAACATGATATGCAAAAG 58.111 32.000 0.00 0.00 40.70 2.27
2266 2656 6.856135 TGCAACAAAACATGATATGCAAAA 57.144 29.167 0.00 0.00 40.70 2.44
2267 2657 7.436430 AATGCAACAAAACATGATATGCAAA 57.564 28.000 0.00 0.00 43.83 3.68
2268 2658 7.436430 AAATGCAACAAAACATGATATGCAA 57.564 28.000 0.00 0.00 43.83 4.08
2269 2659 7.172703 TCAAAATGCAACAAAACATGATATGCA 59.827 29.630 0.00 7.69 44.30 3.96
2270 2660 7.479291 GTCAAAATGCAACAAAACATGATATGC 59.521 33.333 0.00 1.85 37.25 3.14
2271 2661 8.496751 TGTCAAAATGCAACAAAACATGATATG 58.503 29.630 0.00 0.00 0.00 1.78
2272 2662 8.604640 TGTCAAAATGCAACAAAACATGATAT 57.395 26.923 0.00 0.00 0.00 1.63
2273 2663 8.429493 TTGTCAAAATGCAACAAAACATGATA 57.571 26.923 0.00 0.00 30.39 2.15
2274 2664 6.922247 TGTCAAAATGCAACAAAACATGAT 57.078 29.167 0.00 0.00 0.00 2.45
2275 2665 6.732531 TTGTCAAAATGCAACAAAACATGA 57.267 29.167 0.00 0.00 30.39 3.07
2276 2666 7.166142 GGATTTGTCAAAATGCAACAAAACATG 59.834 33.333 15.46 0.00 43.71 3.21
2277 2667 7.067251 AGGATTTGTCAAAATGCAACAAAACAT 59.933 29.630 15.46 9.37 44.23 2.71
2278 2668 6.373774 AGGATTTGTCAAAATGCAACAAAACA 59.626 30.769 15.46 4.47 44.23 2.83
2279 2669 6.784176 AGGATTTGTCAAAATGCAACAAAAC 58.216 32.000 15.46 13.05 44.23 2.43
2280 2670 6.238049 CGAGGATTTGTCAAAATGCAACAAAA 60.238 34.615 15.46 2.80 44.23 2.44
2281 2671 5.233902 CGAGGATTTGTCAAAATGCAACAAA 59.766 36.000 14.22 14.22 44.23 2.83
2282 2672 4.744137 CGAGGATTTGTCAAAATGCAACAA 59.256 37.500 1.31 0.00 44.23 2.83
2283 2673 4.037327 TCGAGGATTTGTCAAAATGCAACA 59.963 37.500 1.31 0.00 44.23 3.33
2284 2674 4.545610 TCGAGGATTTGTCAAAATGCAAC 58.454 39.130 1.31 0.00 44.23 4.17
2285 2675 4.844998 TCGAGGATTTGTCAAAATGCAA 57.155 36.364 1.31 0.00 44.23 4.08
2286 2676 6.507958 TTATCGAGGATTTGTCAAAATGCA 57.492 33.333 1.31 0.00 44.23 3.96
2287 2677 7.168135 GGATTTATCGAGGATTTGTCAAAATGC 59.832 37.037 1.31 0.00 42.66 3.56
2288 2678 8.408601 AGGATTTATCGAGGATTTGTCAAAATG 58.591 33.333 1.31 0.00 36.10 2.32
2289 2679 8.525290 AGGATTTATCGAGGATTTGTCAAAAT 57.475 30.769 1.31 0.00 38.74 1.82
2290 2680 7.938140 AGGATTTATCGAGGATTTGTCAAAA 57.062 32.000 1.31 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.