>input_sequence_84123
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------------ATGGAAGCCAAGTTCTTTCGGTTCCTGAAGCTTGTTGGAGTTGGCTTCAAAGCCAGGACAGAGCGTGA
AGGCCGCGAGTTGTTTTTGAAACTAGGCTACAGCCATGAGGTGCAGTTCACGGCTCCACCTGCCGTCCGCGTCTTCTGCT
TCAAGCCCAACATAATATGCTGTACTGGCATTGACAAGCATAGAGTGCACCATTTCGCTGGAGCTGTCCGATGCAGTAAG
CCTCCAGAAGTGTACAAGGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAGCCGGGGAAGAAGCAGCAGAA
GAAGTAA-------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G282100
CAAAATGGTGAATTTACGTATCCATATCAATGCATTTTAGCTTGCCACTTGGTATCTAGCCTGGAATGGTATATATATTC
CCTGTTTTGAGATAAGATAATCATGCCGTCGTGAACACTGATTG--------GTGCCTTCCCTCATCTCTGTTAGTTGAG
GAATCAAGTAGTTCTTCAAAGTTGAGAGTTGGTTCTTTCATTCCTTCATAGTTACTCCCTCCGTCCCATAATATAAGAGT
G-TTTTGACACTACACTAGTGTCAAAAACGCTCTTATATTATGGGACGGAGGGAGTATTTCAGTAAGAGTTGTTGAATTG
GTTCATCCTCTGTAAGATGAGATAAAGGAATGAACTGATAGAGTTCAGAGTTACTGTTCCCATTCTTTAGTTATTTCATT
GAGAGTTGTTGAATCATTTCATTTCATCCTTTATGAGATGACGTTACAAGATAGACCCCTATATATTGTATCAAATATAT
TGCGATGTTCTGAAAATAATCGATTTAAGCATGGTCTCGTATTTATATACCAAATTCTCGGTACTTGCAGCATGATCATC
GTTATTTTTTACGTAAGCGCTCAATTTTCTGATGAACCTTCTATCCTCCTTTGGTTAGAGATAATATAATTAGGCAGTTA
TGAACTCTATTTGGTGGTTGCTCCCATCTTTGATAGTTGAGGAAATGAGTACGACTTCAGAATTCAGAGTTGCTGTTTTC
ATTCTATATTTATTTCAGTA--AGAGTT----------------------------------------------------
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------------------------------------------------------------TGAAGCATACATTTCATTCT
TTGTGAG--------ATGAAATTACGGGATATACTCGTGTATATTGTACCGAATCTCTTGCAATGCTCTGAAAATAGTCG
A-TTTAACTATGGTCTTGTGTATATATCGAATTCTCAATACTTGCAGCATGATGGTACTCCCCTGTTTCATTACATTAGT
GCTCAATTTTCTGATGAACCTTTTGTCCTTGTTTTGTCAAAAGTAAAGTCGGAAACAAATATTTCATCCTCGGACGGACT
TCTCATCTCGCAATGGAAGCCAAGTTCTTTCGGTTCCTGAAGCTTGTTGGAGTTGGCTTCAAAGCCAGGACAGAGCGTGA
AGGCCGCGAGTTGTTTTTGAAACTAGGCTACAGCCATGAGGTGCAGTTCACGGCTCCACCTGCCGTCCGCGTCTTCTGCT
TCAAGCCCAACATAATATGCTGTACTGGCATTGACAAGCATAGAGTGCACCATTTCGCTGGAGCTGTCCGATGCAGTAAG
CCTCCAGAAGTGTACAAGGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAGCCGGGGAAGAAGCAGCAGAA
GAAGTAACACATGGTGGGTAAACATCCCCATTCGACTTCTAGCTTGTT---AAGACGTCGCATCGCATTTGTGGTGCCGC
GGATTTCACGCGG-TTTTCTCGTGCCGGATTA---TGCCTAGCCCCAGTACCGGGATGGATTTCGTAATAATACTCCGTA
TGC----TATGTGAGTTATCTGGTGAGCATGTGCTGTATGACGTGCATACCGTGGGGGCGGATCAGCACATTCAAACATT
TGTGTTTTTGTTTTGGGCTGGCTAGATGCATGTAACCTACTT-CAATAGCCTAATGTGTTTGTTGATGTCACTA--CTTT
CTTCATATTTTCTCTACACAATATTAGCTCGTTGCTTTGTTACAATCTTTGTTCCGCGCTAAAAATCTGTGGTTCTAGAT
GTATGATCTGTGATAGCGGTTTTGCTTCTTTTTTTTTTAGATTATGTGATAGCGGTTTTGCTGAAGCTGCTGTTTGGGGT
TGAAATTGTTTTAGCTGTGAGATGAGCTTGCATCCGAGACAGAAAGAGCCCACAACA---TTTTTTTTTACTTATAGGTC
AATGCCCGTGCGCCCGTGCGTTGCAACGCGATATAAATATTCCAGTATGACAAGTATACTTTTATTAACTAAAAAATATA
GCATCAAGCCGATATGATCATGATGAGCAACACCAGACCTCATCATATCAAGTAAACTGTATATATGCACTCAACGATGA
CGAAACATAAATTTAGAAACTTTTAATCATGCATTTGAAAATTCTTAAAAGTGTATTGAAAAGTGTTCAATGTGCACAAA
AAAGTAAACATCCAAACATATATTTTTTAAATGTTAATCATGTATTTAAAATGTAAAATGTGTACAAAAATGTTTCTAAT
GCATACAAAGAAGACCAACGTGTTGAAAATAATAAAATAAAAGAGAATATGTAACATCCCAAATTTTCAATTTGGAATGT
TATACATAGATCATCTTTTGCATATCATGTTTTGTTGCATTTTGACAAATCCTCGATAAATCCT
>chr6B_1
CAAAATGGCGAATTTACGTATCCGTATCAACGCATTTTAGCTTGCCACTTGGTATCTAACCTGGAATTGTATATATATTC
CCTGTTTTGAGATAAGATAATCATGCCATCGTGAACTCTGTTTG--------GTGCCTTCCCTCATCTCTGATAGTTGAG
GAATCAAGTAGTTCTTCAGAGTTGAGAGTTGTTGCTTTCATTCCTTCATAGTTACTCCCTCTGTCCCATAATATAAGAGC
ATTTTTGACACTAC-----------AAACGCTCTTATATTATGGGACAGAGGGAGTATTTCAGTAAGAGTTGTTGAATTG
GTTCATCCTCTGTAAGATGAGATAATGGAATGAACTGATAGAGTTCAGAATTTCTGTTCCCATTCTTTAGTTATTTCATT
GAGAGTTGTTGAATCATTACATTTCATCCTTTATGAGATGACGTTACAAGATAGACTCCTTTATATTGTATCAAATCTCT
TGCGATGTTCTGAAAATAATCGATTTAAGCACGGTTTCGTATT-------------------------------------
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----------------------------------------------------------------------TATATATCAA
ATTCTCGGTGCTTGCAGCATGATCATACTACTGTTATTTTTTATGTAAGCGCTCAATTTTCTGATGAATCTTCTATCCTC
CTTTGTTTAGAGATAATATAATTAGGCAGTTATGAACTCTATTTGGTGGTTGCTCCCATCTTTGATAGTTGAGGAACTGA
GTACGCCTTCAGAATTCAGAGTTGCTGTTTTCATTCTATATTTATTTCAGTAAGAGTT--TGACGCATATATTTCATTCT
TTGTGAG--------ATGAAATTACGGGATGTACTCGTGTATATTGTACCGAATCTCTTGCAATGCTCTGAAAATAGTGG
A-TTTAACTATGGTCTTGTGTATATATCAAATTCTCAGTACTTGCAGCATGAGTGTACTCC--TGTTTGTTTACATTAGT
GTTCAA-TTTCTGATGAACCTTTTGTCCTCGTTTTGTGAAG-GTAAAGTCGGAAACAAATATTTCATCCTTGGAAGGACT
TCTCATCTTGCAATGGAAGCCAAGTTCTTTCGGTTTCTGAAGCTTGTTGGAGTTGGCTTCAAAGCAAGGACCGAGCGTGA
AGGCCGCGAGTTGTTTCTGAAACTGGGCTACAGTCATGAGGTGCAGTTCACCGCTCCACCTGCCGTCCGCGTCTTCTGCT
TCAAACCCAACATAATATGCTGTACTGGCATTGACAAGCATAGAGTGCACCATTTTGCTGGAGCTGTCCGATGCAGCAAA
CCTCCAGAAGTGTACAAAGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAACCGGGGAAGAAGCAGCAGAA
GAAGTAACACATGG---GT-AACCTCCCCATTTGACTTCTAGCTTGTT---TAGATACCGCATCACATTTGTGGTGCCG-
--ATTTCATGTGG-TTTTCTCGTGCCGGATTG---TGGCTAGCCCCAGTGCCATGCTGGACTTCGTAATAATACTCTGTA
TGC----TATGTGAATCATCTGGTGAGCATGTACTGTATGACTTGCATACCTTGGGGGCGGATCAGCACATTCAAACATT
TGTGTTTTTGTTTTGGGCTGGCTAGATGCATGTAACCTACTTTCAATAGCCCAGTGTGTTTGTTGATGTCACTA--CTTT
CTTCATATTTTCTCTATACAATATTAGCTCGTTGCTTTGTTACAATCTTTGTTCCGCGCTAAAAATCTGTGGTTCTAGAT
GTATGATCTGTGATAGC------------------------------------GGTTTTGCTGAAGCTGCTGTTTGGGGT
TGAAATTGTTTTAGCTGTGAGATGAGCTTGCATCCGAGATGGAAAGAGCACACAGCAGC----TTTTTAACTTATAGGAC
AATGCCCATGC---------------------------------------------------------------------
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>chr6A_1
CAAAATGGTGAATTTACGTATCCATATCAATGCATTTTAGCTTGCCACTTGGTATCTAACCTGGAATGGTATATAC--TC
CCTGTTTTGAGATAAGATAATCATGCCGTCGTGTACTCTGAATCTCTGATTCGTGCCTTCCCTCATCTCTGATAGTTGAG
GAGTCAAGTAGTTCTTCAGAGTTGAGAGTTGTTGCTTTCATTCCTTCATAGT----------------------------
-------------------------------------------------------TATTTCAGTAAGAGTTGTTGAATTG
GTTCATCCTCTGTGAGATGAGATAATGGAATGAACTGATAGAGTTCAGAATTACTGTTCCCATTCTTTAGTTATTTCATT
GAGAGTTGTTGAATCATTACATTTCATCCATTATGAGGTGAGGTTACAAGATAGACTCCTATATATTGTATCAAATCTCT
TGCGATGTTCTGAAAATAATCGATTTAAGCACGGCCTCGTATT-------------------------------------
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----------------------------------------------------------------------TATATATCAA
ATTCTCGGTACTTGCAGCATGATCATACTACTGTTATTTTTTACGTAACCGCTCAATTTTCTGATGAACCTTCTATCCTC
CTTTGTTTAGAGATAATATAATTAGGCAGTTATGAACTCTATTTGGTGATTGCTCCTATCTTTGATAGTTGAGGAACTGA
GTAGGGCTTCAGAGTTCAGAGTTGCTGTTT-CATTCTGTATTTATTTCAGTCAGAGTTGTTGAGGCATACATTTCAATCT
TTGTGAGATGAAATCATGAAATTACGGGATGTACTCGTGTATATTGTACCGAATTTCTTGCAATGTTCTGAAAACAACCT
ATTTTAACTACGGTCCTGTGTATACATCGAATTCTCAATACTTGCAGCATGATGGTACTCC--TGTTTCTTTACATTAGT
GCTCAATTTTCTGATGAACCTTTTGTCCTTGTTTTGTCAAG-GTCAAGCCGGAAACAAATATTTCATCCTCGTTCGGACT
TCTCATCTCGCAATGGAAGCCAAGTTCTTTCGGTTCCTGAAGCTTGTTGGAGTTGGCTTCAAAGCCAGGACAGAGCGCGA
AGGCCGCGAGTTGTTTCTGAAACTGGGCTACAGCCATGAGGTGCAGTTCACCGCTCCACCTGCCGTCCGCGTCTTCTGCT
TCAAGCCCAACATAATATGCTGTACTGGCATTGACAAGCATAGAGTGCACCATTTCGCTGGAGCTGTCCGATGCAGTAAA
CCTCCAGAAGTGTACAAGGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAGCCGGGGAAGAAACAGCAGAA
GAAGTAACACATGG---GTAAACCTCCCCATTTGACTTCTAGCTTGTT---TAGACGCCCCATCACATTTGTGGTGCCGC
GGATTTCATGTGGTTTTTCTCGTGCCGGGTTT---TGGCTAGCCCTAGTACCATGCTGGACTTCGTAATAATACTCTGTA
TGC----TATGGGAATCATCTGGTGAGCATGTACTGTATGACTTGCATACCGTGGGGGCGGATCAGCACATTTGAACATT
TGTGTTTTTGTTTTGGGCTGGCTAGATGCATGTAACAGCC-----------CAATGTGTTTGTTGATGTCACTA--CTTT
CTTCATATTTTCTCTACACAATATTAGCTCGTTGCTTTGTTACAATCTTTGTTCCGCGCTAAAAATCTGTGGTTTTAGAT
GTATGATCTGTGATAGC------------------------------------GGTTTTGCTGAAGCTGCTGTTTGGGGT
TGAAATTGTTTTAGCCGTGAGATGAGCTTGCATCCGAGATAGAAGGAGCCCACAACAGTTTTTTTTTTAACTTATAG-AC
AATGCCCGT-----------------------------------------------------------------------
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>chr4D_654
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----------------------CCCATCTTCAATAGTCGAGGAACCGAGTAGGGCTTCAGAGTTTTGAGTCGGTG-TTTC
ATCCTGCGGTTATTTCAGTATAAGAGTTGTTTAATTGTTACAGTTCATCCTTTGCAATAAGAGATTATGTGATGAACTCA
TATGTATT-CTACTGAATCTCTTGCGGTGTTCTGAAAATAATTTATCTAAATACTGTCT-------TATATA-ATATCAA
ATTGTCAGTACTTGCAGCATGATCATACT---------------------------------------------------
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-----------------------------------------------------------CC--TGTTTGTTTACATGACT
GCTCAGTTTTGTGATGTACCTTTTGTCCTTGTTTTGTGAAG-GTAA-GCCGGAATCAAACAGTTCATCCTCAGACGAACT
TCCCTTGTTGCAATGGAATCCAAGTTCTTTCGGTTCCTGAAGCTTGTCGGAGTTGGTTTCAAAGCAAGGACAGAGCAAGG
AGGCCGTGAGTTGTTTCTGAAACTTGGCTACAGCCACGAGGTGCAGTTCACCGCTCCACCCGCCGTCCGTGTCTTCTGCT
TCAAACCCAACATAATATGCTGCACTGGCATCGACAAGCACAGGGTGCACCATTTCGCGGGAGCCGTCCGAAGCAGTAAA
CCTCCGGAAGTGTACAAGGGGAAGGGCATACTGTACATCGATGAGGTCATAAAGCTGAAGCCGGGGAAGAAGCAGCAGAA
GAAGTAACACATGG---GTGAGCTTCCCCATTTGACTTCTAGCCTGTTGTTAAGACGCCGCGCTGCATTTGTGGTTCCGC
AGATTTCATGTGGTTTTCTCTGTGCCGGATTT---TGGCAGGCCCCGGTACCAGGCTGGACCTAGTAATAATACTCTGTA
TGCGACGTATGTGAAACGTCTGATGAATTTGTTGTATATGACTTGCATACCGTGGGGT-GGATCGGCGGATTCCAACTTT
TTTG-TTTTGTTTTGAGCTGGCTAGATGTG----ACGTATCTTCAATAGTTCAATGTGTTTGTTGCTGCCACAA--CTC-
---CATCTTTTCTCTACACAATATTA------------------------------------------------------
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>chr4A_664
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--------------------------------ATAGTCGGGGAACCGAGTAGAGCTTCAGAGTTTAGAGTTAGCATTTTC
ATCCTCCAGTTATTTCAGTA--AGAGTTGTTTATTTGTGACCGTGCATCCTTTTTTATATGAGATTATCTGATGAATTCA
TATGTATTTCTACTGAATTTCTTGTCTTGGTCTGAAAATCATTTATCTAAGTAGTAAGTTCTGATCTGTATATATGTCAA
ATTGTCAGTACTTGCAGCATGACCATACT---------------------------------------------------
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-----------------------------------------------------------CC--TGTTTGTTTACATGAGT
GCTCAGTTTTGTGATGAACCTTTTGTCTTTGTTTTGTTAAG-GTAA-CCCGGAATCAAACATTTCATCCTCAGACAAACT
TCCCTTGTTGCTATGGAATCCAAGTTCTTTCAGTTCCTGAAGCTTGTCGGAGTTGGTTTCAAAGCAAGGACAGAGCAAGG
AGGCCGCGAGTTGTTTCTGAAACTAGGTTACAGCCATGAGGTGCAGTTCACTGCTCCACCCGCCGTCCGTGTCTTCTGCT
TCAAACCCAACATAATATGCTGCACTGGCATCGACAAGCATAGAGTGCACCATTTCGCCGGAGCCGTGCGAAGCAGTAAA
CCTCCGGAAGTGTACAAGGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAGCCGGGGAAGAAGCAGCAGAA
GAAGTAACACATGG---GTGAGCCTCCCCATTTGACTTCTAGCCTGTTGTTAAGGCGCCGCGACGCG--TTTGTTGCCGC
AGAATTCATGTGGTTTTCTCTGTGCTGGGCTAGTATGGCTAGCCCCGGTACCAGGCTGGACTTTGTAATAATACTCCGTA
TGCGACGTATGTGAATCGTCTGATGAACATGCATATCGTTGG---------GTGGGGGTGGATCAGCGGATTCCAACATT
TTTG-TTTTGTTTTGAGCTGGCTGGATGTG----ACGTATCTTCAATAGTTCAATGTGTTTGTTGCTGACACAACTCTC-
---CATCTTTTCTCTACAAAATATTACTC---------------------------------------------------
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>chr4B_721
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---------TTATTTCAGTA--AGAGTTGTTTAATTTTTACCGTTCATCCTTTGTAATAAGAGATTATGTGATGAACTCA
TATGTATT-CTGCTGAATCTCTTGCAGTGTTCTGAAAATAATTTATCTAAATACTGTCT-------TGTATGTATATCAA
ATTGTCAGTACTTGCAGCATGATCATACT---------------------------------------------------
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-----------------------------------------------------------CC--TGTTTATTTACATGACT
GCTCTGTTT-----TGAACCTTTTGTCCTTGTTTTGTTAAG-GTAA-GTCAGAAAGAAATATTCCATCCTCGGACAAACT
TCTCTTGTTGCAATGGAATCCAAGTTCTTTCGGTTCCTGAAGCTTGTCGGAGTTGGTTTCAAAGCAAGGACAGAGCAAGG
AGGCCGCGAGTTGTTTCTGAAACTAGGCTACAGCCATGAGGTGCAGTTCACCGCTCCACCCGCCGTCCGCGTCTTCTGCT
TCAAACCCAACATAATATGCTGCACTGGCATTGACAAGCATAGAGTGCACCATTTTGCCGGAGCCGTCCGAAGCAGTAAA
CCTCCGGAAGTGTACAAGGGGAAGGGCATACTGTACATTGATGAGGTCATAAAGCTGAAGCCGGGGAAGAAGCAGCAGAA
GAAGTAACACGTGG---GTGAGCCTCCCCATTTGACTTCTAGCCTGCTGTTAAGGCGCCGCGTAGCG--TTTGTTGCTGC
AGATTTCATGTGGTTTTCTCTGTGCTGGGCTATTATGGCTAGCCCCGGTACCAGGCTGGACTTCGTAATAATACTCCG--
-------TATGTGAATCGTCTGATGAACATGCATACCGTTGG---------GTGGGGGTGGATCAGCGGATTCCAACATT
TTTG-TTTTGTTTTGAGCTGGCTGGATGTG----ACGTATCTTCAATAGTTCAATGTGTTTGTTGCTGACACAACTCTC-
---CATCTTTTCTCTACACAATATTA------------------------------------------------------
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>SNPs
----------------------------------------------------------S---------------------
------------------------------------S----------------------------------S--------
------------------S------------S-S---------------------------S-----------------S
S-------------SSSSSSSSSSS----------------------S--------------------------------
-------------------------S-----------------------S------------------------------
------------------S-------------------------------------S-------------------S-S-
-------------------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--------SS-----S------SS-----S-S-------S--S-------S-------
--S--SS-S-----------------------------------------------------------------------
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---------------------------------------------------------------S----------------
------------------------------S-------------------------------------------------
-------------------------------------------------------------SS------S----------
----------------------------------------SS--------------------------------------
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----------------S----------------------------------S----------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
--------------SSS------S--------S------------------------S----------------------
--------S-S--------------------------S--------------S--S----S-------------------
--------------S-S---------------S---------S-------------------------------------
---------------------------------------------------S----------------------------
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-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
---------------------------------------S----------------------------S---------S-
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1262
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------------------------------------------TGCAGCATGATGGTACTCCC------------------
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>reverse_2133
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----------------------------------------------------CGGTTTTGCTGAAGCTGCTG--------
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