Multiple sequence alignment - TraesCS6D01G281000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G281000 chr6D 100.000 4315 0 0 1 4315 388339947 388335633 0.000000e+00 7969
1 TraesCS6D01G281000 chr6D 88.849 278 22 6 4045 4315 372770032 372770307 2.490000e-87 333
2 TraesCS6D01G281000 chr6B 92.032 3878 225 44 149 3984 580380895 580377060 0.000000e+00 5373
3 TraesCS6D01G281000 chr6B 79.767 257 41 6 2631 2885 580378720 580378473 4.430000e-40 176
4 TraesCS6D01G281000 chr6A 83.227 1574 180 51 2222 3744 534963199 534961659 0.000000e+00 1367
5 TraesCS6D01G281000 chr6A 82.175 1352 157 46 907 2204 534964580 534963259 0.000000e+00 1085
6 TraesCS6D01G281000 chr6A 83.744 203 27 3 3807 4007 534961659 534961461 2.050000e-43 187
7 TraesCS6D01G281000 chr3D 79.072 1013 173 29 2330 3317 1215800 1214802 0.000000e+00 660
8 TraesCS6D01G281000 chr3D 87.456 287 23 7 4042 4315 39163099 39162813 6.960000e-83 318
9 TraesCS6D01G281000 chrUn 77.948 653 102 26 2330 2964 34301459 34300831 1.900000e-98 370
10 TraesCS6D01G281000 chr4D 89.170 277 20 6 4048 4315 479408652 479408377 1.920000e-88 337
11 TraesCS6D01G281000 chr2D 89.130 276 22 5 4046 4313 65658710 65658435 1.920000e-88 337
12 TraesCS6D01G281000 chr2D 88.214 280 22 7 4045 4315 306336422 306336699 1.500000e-84 324
13 TraesCS6D01G281000 chr2D 87.770 278 26 5 4046 4315 186957365 186957088 6.960000e-83 318
14 TraesCS6D01G281000 chr2D 87.726 277 27 5 4046 4315 544581458 544581182 2.500000e-82 316
15 TraesCS6D01G281000 chr1D 88.889 279 23 5 4045 4315 447062028 447062306 1.920000e-88 337
16 TraesCS6D01G281000 chr5D 88.129 278 21 9 4046 4314 400267109 400267383 1.940000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G281000 chr6D 388335633 388339947 4314 True 7969.000000 7969 100.000000 1 4315 1 chr6D.!!$R1 4314
1 TraesCS6D01G281000 chr6B 580377060 580380895 3835 True 2774.500000 5373 85.899500 149 3984 2 chr6B.!!$R1 3835
2 TraesCS6D01G281000 chr6A 534961461 534964580 3119 True 879.666667 1367 83.048667 907 4007 3 chr6A.!!$R1 3100
3 TraesCS6D01G281000 chr3D 1214802 1215800 998 True 660.000000 660 79.072000 2330 3317 1 chr3D.!!$R1 987
4 TraesCS6D01G281000 chrUn 34300831 34301459 628 True 370.000000 370 77.948000 2330 2964 1 chrUn.!!$R1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.179012 TCTCGGTTTTTGTCCCCACC 60.179 55.000 0.0 0.0 0.00 4.61 F
47 48 1.202348 CCACCGATTTTTGGGAGCTTC 59.798 52.381 0.0 0.0 0.00 3.86 F
1683 1729 0.944386 ACAATGCACTGGTTCGTGTC 59.056 50.000 0.0 0.0 37.24 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1633 0.674895 AACAGTCTGGCCTCGCAATC 60.675 55.000 3.32 0.00 0.0 2.67 R
1749 1800 2.832129 ACAGACAATAGACCGGACATGT 59.168 45.455 9.46 9.21 0.0 3.21 R
3379 3536 0.248289 TACGAGCTTACCCAGGCAAC 59.752 55.000 0.00 0.00 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.663826 GAGACAGCTCATTCTCGGTT 57.336 50.000 1.67 0.00 40.96 4.44
20 21 2.966050 GAGACAGCTCATTCTCGGTTT 58.034 47.619 1.67 0.00 40.96 3.27
21 22 3.330267 GAGACAGCTCATTCTCGGTTTT 58.670 45.455 1.67 0.00 40.96 2.43
22 23 3.744660 AGACAGCTCATTCTCGGTTTTT 58.255 40.909 0.00 0.00 0.00 1.94
23 24 3.499918 AGACAGCTCATTCTCGGTTTTTG 59.500 43.478 0.00 0.00 0.00 2.44
24 25 3.214328 ACAGCTCATTCTCGGTTTTTGT 58.786 40.909 0.00 0.00 0.00 2.83
25 26 3.251004 ACAGCTCATTCTCGGTTTTTGTC 59.749 43.478 0.00 0.00 0.00 3.18
26 27 2.814336 AGCTCATTCTCGGTTTTTGTCC 59.186 45.455 0.00 0.00 0.00 4.02
27 28 2.095212 GCTCATTCTCGGTTTTTGTCCC 60.095 50.000 0.00 0.00 0.00 4.46
28 29 2.488153 CTCATTCTCGGTTTTTGTCCCC 59.512 50.000 0.00 0.00 0.00 4.81
29 30 2.158593 TCATTCTCGGTTTTTGTCCCCA 60.159 45.455 0.00 0.00 0.00 4.96
30 31 1.682740 TTCTCGGTTTTTGTCCCCAC 58.317 50.000 0.00 0.00 0.00 4.61
31 32 0.179012 TCTCGGTTTTTGTCCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
32 33 3.035727 CGGTTTTTGTCCCCACCG 58.964 61.111 0.00 0.00 45.75 4.94
33 34 4.583086 GGTTTTTGTCCCCACCGA 57.417 55.556 0.00 0.00 0.00 4.69
34 35 3.045518 GGTTTTTGTCCCCACCGAT 57.954 52.632 0.00 0.00 0.00 4.18
35 36 1.334160 GGTTTTTGTCCCCACCGATT 58.666 50.000 0.00 0.00 0.00 3.34
36 37 1.689813 GGTTTTTGTCCCCACCGATTT 59.310 47.619 0.00 0.00 0.00 2.17
37 38 2.103432 GGTTTTTGTCCCCACCGATTTT 59.897 45.455 0.00 0.00 0.00 1.82
38 39 3.432467 GGTTTTTGTCCCCACCGATTTTT 60.432 43.478 0.00 0.00 0.00 1.94
39 40 3.460857 TTTTGTCCCCACCGATTTTTG 57.539 42.857 0.00 0.00 0.00 2.44
40 41 1.333177 TTGTCCCCACCGATTTTTGG 58.667 50.000 0.00 0.00 0.00 3.28
45 46 2.961424 CCACCGATTTTTGGGAGCT 58.039 52.632 0.00 0.00 0.00 4.09
46 47 1.256812 CCACCGATTTTTGGGAGCTT 58.743 50.000 0.00 0.00 0.00 3.74
47 48 1.202348 CCACCGATTTTTGGGAGCTTC 59.798 52.381 0.00 0.00 0.00 3.86
48 49 1.202348 CACCGATTTTTGGGAGCTTCC 59.798 52.381 3.12 3.12 35.23 3.46
58 59 2.070639 GGAGCTTCCCTCAACCAGT 58.929 57.895 0.00 0.00 42.62 4.00
59 60 1.276622 GGAGCTTCCCTCAACCAGTA 58.723 55.000 0.00 0.00 42.62 2.74
60 61 1.840635 GGAGCTTCCCTCAACCAGTAT 59.159 52.381 0.00 0.00 42.62 2.12
61 62 2.239907 GGAGCTTCCCTCAACCAGTATT 59.760 50.000 0.00 0.00 42.62 1.89
62 63 3.308473 GGAGCTTCCCTCAACCAGTATTT 60.308 47.826 0.00 0.00 42.62 1.40
63 64 4.336280 GAGCTTCCCTCAACCAGTATTTT 58.664 43.478 0.00 0.00 40.45 1.82
64 65 4.336280 AGCTTCCCTCAACCAGTATTTTC 58.664 43.478 0.00 0.00 0.00 2.29
65 66 4.079253 GCTTCCCTCAACCAGTATTTTCA 58.921 43.478 0.00 0.00 0.00 2.69
66 67 4.706962 GCTTCCCTCAACCAGTATTTTCAT 59.293 41.667 0.00 0.00 0.00 2.57
67 68 5.185828 GCTTCCCTCAACCAGTATTTTCATT 59.814 40.000 0.00 0.00 0.00 2.57
68 69 6.295292 GCTTCCCTCAACCAGTATTTTCATTT 60.295 38.462 0.00 0.00 0.00 2.32
69 70 7.610580 TTCCCTCAACCAGTATTTTCATTTT 57.389 32.000 0.00 0.00 0.00 1.82
70 71 7.610580 TCCCTCAACCAGTATTTTCATTTTT 57.389 32.000 0.00 0.00 0.00 1.94
71 72 7.666623 TCCCTCAACCAGTATTTTCATTTTTC 58.333 34.615 0.00 0.00 0.00 2.29
72 73 7.508977 TCCCTCAACCAGTATTTTCATTTTTCT 59.491 33.333 0.00 0.00 0.00 2.52
73 74 7.599998 CCCTCAACCAGTATTTTCATTTTTCTG 59.400 37.037 0.00 0.00 0.00 3.02
74 75 8.143835 CCTCAACCAGTATTTTCATTTTTCTGT 58.856 33.333 0.00 0.00 0.00 3.41
75 76 9.533253 CTCAACCAGTATTTTCATTTTTCTGTT 57.467 29.630 0.00 0.00 0.00 3.16
76 77 9.883142 TCAACCAGTATTTTCATTTTTCTGTTT 57.117 25.926 0.00 0.00 0.00 2.83
88 89 9.487790 TTCATTTTTCTGTTTTCTGTTTTCTGT 57.512 25.926 0.00 0.00 0.00 3.41
89 90 9.487790 TCATTTTTCTGTTTTCTGTTTTCTGTT 57.512 25.926 0.00 0.00 0.00 3.16
269 270 8.679288 AAAATCATAAACATTTCTCAGCTTCG 57.321 30.769 0.00 0.00 0.00 3.79
273 274 6.595326 TCATAAACATTTCTCAGCTTCGTGAT 59.405 34.615 0.00 0.00 0.00 3.06
274 275 5.695851 AAACATTTCTCAGCTTCGTGATT 57.304 34.783 0.00 0.00 0.00 2.57
275 276 4.675190 ACATTTCTCAGCTTCGTGATTG 57.325 40.909 0.00 0.00 0.00 2.67
293 296 7.871973 TCGTGATTGTTTTGGAAAATCATGAAT 59.128 29.630 14.12 0.00 46.03 2.57
294 297 8.497554 CGTGATTGTTTTGGAAAATCATGAATT 58.502 29.630 0.00 0.00 44.56 2.17
347 350 7.776107 TGAAATTAGGAACATTTTGTGACACA 58.224 30.769 3.56 3.56 0.00 3.72
357 360 4.427096 TTTTGTGACACACGTGAACATT 57.573 36.364 25.01 0.00 37.14 2.71
376 379 8.396390 TGAACATTGTTTTGAATTGGTGAATTG 58.604 29.630 3.08 0.00 31.58 2.32
377 380 7.862512 ACATTGTTTTGAATTGGTGAATTGT 57.137 28.000 0.00 0.00 31.58 2.71
378 381 8.278729 ACATTGTTTTGAATTGGTGAATTGTT 57.721 26.923 0.00 0.00 31.58 2.83
386 389 6.743110 TGAATTGGTGAATTGTTTTGATCGA 58.257 32.000 0.00 0.00 31.58 3.59
388 391 5.506686 TTGGTGAATTGTTTTGATCGACA 57.493 34.783 0.00 0.00 0.00 4.35
401 404 9.179552 TGTTTTGATCGACAAACATATTTTCTG 57.820 29.630 12.93 0.00 46.32 3.02
409 412 9.393249 TCGACAAACATATTTTCTGAAATTCAC 57.607 29.630 3.31 0.00 36.82 3.18
491 495 9.658799 TGGAACAAATTTTGAAATTCTTGTACA 57.341 25.926 15.81 0.00 37.62 2.90
561 568 9.790344 AAATCCACAAACATTTTTGGAATATGA 57.210 25.926 14.52 0.00 46.55 2.15
562 569 9.439500 AATCCACAAACATTTTTGGAATATGAG 57.561 29.630 14.52 0.00 46.55 2.90
640 649 9.743057 AATCGTGAAAAACATTTTGAATCTACA 57.257 25.926 0.00 0.00 0.00 2.74
643 652 9.398170 CGTGAAAAACATTTTGAATCTACAGAT 57.602 29.630 0.00 0.00 36.07 2.90
696 705 9.771534 TGATTTCCCGACTATTTTTCAAAATTT 57.228 25.926 2.91 0.00 39.24 1.82
787 796 8.334632 GCATTTTTGTAATCCCGAATTATTTGG 58.665 33.333 4.23 4.23 32.53 3.28
846 855 9.863845 AAAGGAAAAGAGAAAAACGAAATGTAA 57.136 25.926 0.00 0.00 0.00 2.41
926 936 3.901797 CTCGCCGCCCCTTCTTTGT 62.902 63.158 0.00 0.00 0.00 2.83
969 979 1.521457 CTAGATTTGCGGCCGCTCA 60.521 57.895 45.79 33.66 42.51 4.26
1137 1150 2.100603 GACGAGAAGTCCGCTCCG 59.899 66.667 0.00 0.00 43.95 4.63
1438 1451 2.164219 ACTGGCTGTGTTTTGACACTTG 59.836 45.455 10.59 5.42 40.97 3.16
1515 1541 6.366332 GTCAGCGTATTATATGAGGAGGTTTG 59.634 42.308 0.00 0.00 0.00 2.93
1522 1548 7.881775 ATTATATGAGGAGGTTTGGTTGTTC 57.118 36.000 0.00 0.00 0.00 3.18
1523 1549 2.358322 TGAGGAGGTTTGGTTGTTCC 57.642 50.000 0.00 0.00 0.00 3.62
1536 1562 1.792949 GTTGTTCCTGCTGTAGTGTCG 59.207 52.381 0.00 0.00 0.00 4.35
1581 1615 4.144297 GTGGAATTGCATTGCTATAGGGA 58.856 43.478 10.49 0.00 0.00 4.20
1585 1619 5.336213 GGAATTGCATTGCTATAGGGACATG 60.336 44.000 10.49 0.00 0.00 3.21
1599 1633 2.081462 GGACATGGGGTTAGTGTTTCG 58.919 52.381 0.00 0.00 0.00 3.46
1606 1640 2.070783 GGGTTAGTGTTTCGATTGCGA 58.929 47.619 0.00 0.00 46.33 5.10
1632 1672 3.873952 CAGACTGTTATTTGCTAGAGCCC 59.126 47.826 0.00 0.00 41.18 5.19
1683 1729 0.944386 ACAATGCACTGGTTCGTGTC 59.056 50.000 0.00 0.00 37.24 3.67
1732 1778 1.812571 GTCTTGGTGTGCTTATGGTGG 59.187 52.381 0.00 0.00 0.00 4.61
1749 1800 3.585289 TGGTGGCCAGTAGTTTAGAATGA 59.415 43.478 5.11 0.00 0.00 2.57
1788 1839 9.725019 ATTGTCTGTGATAAGTGAGTAAAATCA 57.275 29.630 0.00 0.00 0.00 2.57
1943 2004 8.955061 ATACAAATGAAGACAGATGTTTTTCG 57.045 30.769 0.00 0.00 33.21 3.46
1976 2037 7.508687 TCTGCATTCAACATATTAGCCTTCTA 58.491 34.615 0.00 0.00 0.00 2.10
2020 2081 6.127758 TGAGGGTTGTGATTACATTATTGTGC 60.128 38.462 0.48 0.00 36.53 4.57
2037 2098 1.398390 GTGCTATGCTACTTGTGCACC 59.602 52.381 15.69 0.00 43.59 5.01
2049 2110 1.908344 TGTGCACCATGTATGTGCTT 58.092 45.000 21.21 0.00 43.74 3.91
2070 2131 7.701924 GTGCTTGTGCTAGAAATTGCATAATTA 59.298 33.333 0.00 0.00 41.45 1.40
2085 2155 8.749026 TTGCATAATTAAATTGGCATCCATTT 57.251 26.923 0.00 0.00 35.07 2.32
2087 2157 8.212312 TGCATAATTAAATTGGCATCCATTTCT 58.788 29.630 0.00 0.00 31.53 2.52
2088 2158 9.059260 GCATAATTAAATTGGCATCCATTTCTT 57.941 29.630 0.00 0.00 31.53 2.52
2105 2175 6.825721 CCATTTCTTAGAGCACAAGATAAGGT 59.174 38.462 0.00 0.00 32.27 3.50
2136 2206 9.585099 AATATGTAAATGTGTTTATTGCTGTGG 57.415 29.630 0.00 0.00 32.76 4.17
2138 2208 3.317603 AATGTGTTTATTGCTGTGGCC 57.682 42.857 0.00 0.00 37.74 5.36
2156 2226 4.576463 GTGGCCATTATCCTGTTCTTACTG 59.424 45.833 9.72 0.00 0.00 2.74
2158 2228 3.248602 GCCATTATCCTGTTCTTACTGCG 59.751 47.826 0.00 0.00 0.00 5.18
2172 2242 1.305201 ACTGCGGTGTGTTTGTTAGG 58.695 50.000 0.00 0.00 0.00 2.69
2280 2394 8.172741 AGTACATCAAATGGATATAATTGGCCT 58.827 33.333 3.32 0.00 33.95 5.19
2571 2686 1.806542 CCAGGTTCTGTTGGATGTTCG 59.193 52.381 0.00 0.00 36.55 3.95
2596 2713 7.307219 CGTCGAATGGATATAACTTTCCCTTTC 60.307 40.741 0.00 0.00 0.00 2.62
2664 2791 7.767745 AATATGCTTGAGTATGCGATAGATG 57.232 36.000 0.00 0.00 39.76 2.90
2971 3116 2.624838 CAGATGGCCACTTTGTTTCACT 59.375 45.455 8.16 0.00 0.00 3.41
3003 3148 7.130269 ACTACGAAATAACTGAACAAAAGCAC 58.870 34.615 0.00 0.00 0.00 4.40
3027 3181 9.759259 CACATATATGGCTGAATTGTTTATACG 57.241 33.333 16.96 0.00 0.00 3.06
3218 3374 3.904339 AGAAGAAGAAGGGTTCTGCTGTA 59.096 43.478 0.00 0.00 45.14 2.74
3269 3425 0.316442 GGCAATCGTCACATGCATCG 60.316 55.000 0.00 0.00 41.80 3.84
3374 3531 6.777213 AACTGTACACTAGGTAGAATCCAG 57.223 41.667 0.00 0.66 31.13 3.86
3376 3533 6.966751 ACTGTACACTAGGTAGAATCCAGTA 58.033 40.000 0.00 0.00 31.13 2.74
3378 3535 8.060075 ACTGTACACTAGGTAGAATCCAGTATT 58.940 37.037 0.00 0.00 31.13 1.89
3379 3536 8.234136 TGTACACTAGGTAGAATCCAGTATTG 57.766 38.462 0.00 0.00 31.13 1.90
3387 3544 3.624777 AGAATCCAGTATTGTTGCCTGG 58.375 45.455 0.00 0.00 45.81 4.45
3399 3556 1.134491 GTTGCCTGGGTAAGCTCGTAT 60.134 52.381 0.00 0.00 0.00 3.06
3407 3564 1.478137 GTAAGCTCGTATCACTGCGG 58.522 55.000 0.00 0.00 0.00 5.69
3447 3604 6.534793 AGGTTTGTTTCTTGTATTTGCAGTTG 59.465 34.615 0.00 0.00 0.00 3.16
3469 3641 0.179004 TGCCACACTCGGATTGGTTT 60.179 50.000 0.29 0.00 32.50 3.27
3471 3643 1.890876 CCACACTCGGATTGGTTTGA 58.109 50.000 0.29 0.00 0.00 2.69
3486 3658 7.148423 GGATTGGTTTGATAAAATGTTTCCAGC 60.148 37.037 0.00 0.00 0.00 4.85
3488 3660 5.010112 TGGTTTGATAAAATGTTTCCAGCGA 59.990 36.000 0.00 0.00 0.00 4.93
3489 3661 5.923684 GGTTTGATAAAATGTTTCCAGCGAA 59.076 36.000 0.00 0.00 0.00 4.70
3490 3662 6.089417 GGTTTGATAAAATGTTTCCAGCGAAG 59.911 38.462 0.00 0.00 0.00 3.79
3491 3663 5.957842 TGATAAAATGTTTCCAGCGAAGT 57.042 34.783 0.00 0.00 0.00 3.01
3493 3665 5.471797 TGATAAAATGTTTCCAGCGAAGTCA 59.528 36.000 0.00 0.00 0.00 3.41
3494 3666 3.904136 AAATGTTTCCAGCGAAGTCAG 57.096 42.857 0.00 0.00 0.00 3.51
3495 3667 1.813513 ATGTTTCCAGCGAAGTCAGG 58.186 50.000 0.00 0.00 0.00 3.86
3496 3668 0.468226 TGTTTCCAGCGAAGTCAGGT 59.532 50.000 0.00 0.00 0.00 4.00
3499 3671 3.135994 GTTTCCAGCGAAGTCAGGTTTA 58.864 45.455 0.00 0.00 0.00 2.01
3505 3679 4.753107 CCAGCGAAGTCAGGTTTAAGTAAA 59.247 41.667 0.00 0.00 0.00 2.01
3515 3689 5.876460 TCAGGTTTAAGTAAATTACTCGGGC 59.124 40.000 6.09 0.00 38.26 6.13
3517 3691 4.943093 GGTTTAAGTAAATTACTCGGGCCA 59.057 41.667 4.39 0.00 38.26 5.36
3530 3704 0.109132 CGGGCCATCTTTTGCTTCAC 60.109 55.000 4.39 0.00 0.00 3.18
3564 3738 4.159879 CCTGAATCTACCCGTAACTGAACT 59.840 45.833 0.00 0.00 0.00 3.01
3575 3749 3.302480 CGTAACTGAACTGTGTCTTGTGC 60.302 47.826 0.00 0.00 0.00 4.57
3581 3755 3.002246 TGAACTGTGTCTTGTGCGAAATC 59.998 43.478 0.00 0.00 0.00 2.17
3583 3757 2.802816 ACTGTGTCTTGTGCGAAATCTC 59.197 45.455 0.00 0.00 0.00 2.75
3595 3769 2.095718 GCGAAATCTCGGCATAATTCCC 60.096 50.000 0.00 0.00 45.55 3.97
3597 3771 3.187227 CGAAATCTCGGCATAATTCCCAG 59.813 47.826 0.00 0.00 41.57 4.45
3603 3777 1.750332 CGGCATAATTCCCAGGAAGCA 60.750 52.381 5.21 0.00 37.56 3.91
3605 3779 2.560105 GGCATAATTCCCAGGAAGCATC 59.440 50.000 5.21 0.00 37.56 3.91
3687 3866 6.100279 ACATGGAAATCTTAGCTCATAGTCCA 59.900 38.462 0.00 0.00 37.07 4.02
3694 3873 9.692325 AAATCTTAGCTCATAGTCCAAAATTCT 57.308 29.630 0.00 0.00 0.00 2.40
3734 3913 3.054875 TCATAGAAGCCTGCAGTGTTGAT 60.055 43.478 13.81 0.00 0.00 2.57
3768 3947 1.585592 TGATCAAGGGGAGGGATAGGT 59.414 52.381 0.00 0.00 0.00 3.08
3796 3975 9.860898 GTTTTAGCAAATCTGGAGATGTTAAAT 57.139 29.630 0.00 0.00 34.49 1.40
3797 3976 9.859427 TTTTAGCAAATCTGGAGATGTTAAATG 57.141 29.630 0.00 0.00 34.49 2.32
3798 3977 5.899299 AGCAAATCTGGAGATGTTAAATGC 58.101 37.500 0.00 0.00 34.49 3.56
3799 3978 4.736793 GCAAATCTGGAGATGTTAAATGCG 59.263 41.667 0.00 0.00 34.49 4.73
3800 3979 5.449041 GCAAATCTGGAGATGTTAAATGCGA 60.449 40.000 0.00 0.00 34.49 5.10
3861 4041 1.237285 AACATGAGAGCAACCCACGC 61.237 55.000 0.00 0.00 0.00 5.34
3863 4043 1.672356 ATGAGAGCAACCCACGCAC 60.672 57.895 0.00 0.00 0.00 5.34
3864 4044 3.414700 GAGAGCAACCCACGCACG 61.415 66.667 0.00 0.00 0.00 5.34
3865 4045 4.988598 AGAGCAACCCACGCACGG 62.989 66.667 0.00 0.00 0.00 4.94
3880 4060 0.460284 CACGGGGAAGAACAGATCCG 60.460 60.000 0.00 0.00 42.69 4.18
3925 4105 0.107848 ATTAGTACCCTGTGCCGTGC 60.108 55.000 0.00 0.00 0.00 5.34
3926 4106 2.175035 TTAGTACCCTGTGCCGTGCC 62.175 60.000 0.00 0.00 0.00 5.01
3978 4160 0.762418 TGGGACACGTTCATGGTCTT 59.238 50.000 3.37 0.00 0.00 3.01
3986 4168 2.744202 ACGTTCATGGTCTTCAATGCTC 59.256 45.455 0.00 0.00 0.00 4.26
3990 4172 3.959293 TCATGGTCTTCAATGCTCATGT 58.041 40.909 0.00 0.00 35.07 3.21
4000 4182 7.487189 GTCTTCAATGCTCATGTCTTTATTTGG 59.513 37.037 0.00 0.00 0.00 3.28
4002 4184 7.230849 TCAATGCTCATGTCTTTATTTGGTT 57.769 32.000 0.00 0.00 0.00 3.67
4007 4189 7.271511 TGCTCATGTCTTTATTTGGTTTTGTT 58.728 30.769 0.00 0.00 0.00 2.83
4008 4190 7.768120 TGCTCATGTCTTTATTTGGTTTTGTTT 59.232 29.630 0.00 0.00 0.00 2.83
4009 4191 8.063630 GCTCATGTCTTTATTTGGTTTTGTTTG 58.936 33.333 0.00 0.00 0.00 2.93
4010 4192 9.311916 CTCATGTCTTTATTTGGTTTTGTTTGA 57.688 29.630 0.00 0.00 0.00 2.69
4011 4193 9.311916 TCATGTCTTTATTTGGTTTTGTTTGAG 57.688 29.630 0.00 0.00 0.00 3.02
4012 4194 9.311916 CATGTCTTTATTTGGTTTTGTTTGAGA 57.688 29.630 0.00 0.00 0.00 3.27
4013 4195 8.925161 TGTCTTTATTTGGTTTTGTTTGAGAG 57.075 30.769 0.00 0.00 0.00 3.20
4014 4196 7.978975 TGTCTTTATTTGGTTTTGTTTGAGAGG 59.021 33.333 0.00 0.00 0.00 3.69
4015 4197 7.979537 GTCTTTATTTGGTTTTGTTTGAGAGGT 59.020 33.333 0.00 0.00 0.00 3.85
4016 4198 7.978975 TCTTTATTTGGTTTTGTTTGAGAGGTG 59.021 33.333 0.00 0.00 0.00 4.00
4017 4199 5.675684 ATTTGGTTTTGTTTGAGAGGTGT 57.324 34.783 0.00 0.00 0.00 4.16
4018 4200 4.712122 TTGGTTTTGTTTGAGAGGTGTC 57.288 40.909 0.00 0.00 0.00 3.67
4019 4201 3.020984 TGGTTTTGTTTGAGAGGTGTCC 58.979 45.455 0.00 0.00 0.00 4.02
4020 4202 2.361119 GGTTTTGTTTGAGAGGTGTCCC 59.639 50.000 0.00 0.00 0.00 4.46
4021 4203 3.288092 GTTTTGTTTGAGAGGTGTCCCT 58.712 45.455 0.00 0.00 46.66 4.20
4036 4218 7.125792 AGGTGTCCCTCATATTTGTTACTAG 57.874 40.000 0.00 0.00 35.62 2.57
4037 4219 6.672657 AGGTGTCCCTCATATTTGTTACTAGT 59.327 38.462 0.00 0.00 35.62 2.57
4038 4220 7.842743 AGGTGTCCCTCATATTTGTTACTAGTA 59.157 37.037 0.00 0.00 35.62 1.82
4039 4221 7.924947 GGTGTCCCTCATATTTGTTACTAGTAC 59.075 40.741 0.91 0.00 0.00 2.73
4040 4222 8.693625 GTGTCCCTCATATTTGTTACTAGTACT 58.306 37.037 0.91 0.00 0.00 2.73
4041 4223 9.925545 TGTCCCTCATATTTGTTACTAGTACTA 57.074 33.333 0.91 1.89 0.00 1.82
4063 4245 8.184304 ACTACTATAAGAGCAACTCTAATGGG 57.816 38.462 0.00 0.00 40.28 4.00
4064 4246 5.859495 ACTATAAGAGCAACTCTAATGGGC 58.141 41.667 0.00 0.00 40.28 5.36
4065 4247 2.029838 AAGAGCAACTCTAATGGGCG 57.970 50.000 0.00 0.00 40.28 6.13
4066 4248 1.195115 AGAGCAACTCTAATGGGCGA 58.805 50.000 0.00 0.00 39.28 5.54
4067 4249 1.765314 AGAGCAACTCTAATGGGCGAT 59.235 47.619 0.00 0.00 39.28 4.58
4068 4250 2.139118 GAGCAACTCTAATGGGCGATC 58.861 52.381 0.00 0.00 0.00 3.69
4069 4251 1.202698 AGCAACTCTAATGGGCGATCC 60.203 52.381 0.00 0.00 0.00 3.36
4077 4259 4.532490 TGGGCGATCCATTTCGTC 57.468 55.556 0.00 0.00 41.46 4.20
4078 4260 1.904771 TGGGCGATCCATTTCGTCT 59.095 52.632 0.00 0.00 43.09 4.18
4079 4261 0.251916 TGGGCGATCCATTTCGTCTT 59.748 50.000 0.00 0.00 43.09 3.01
4080 4262 0.938008 GGGCGATCCATTTCGTCTTC 59.062 55.000 0.00 0.00 43.09 2.87
4081 4263 0.938008 GGCGATCCATTTCGTCTTCC 59.062 55.000 0.00 0.00 40.47 3.46
4082 4264 0.577269 GCGATCCATTTCGTCTTCCG 59.423 55.000 0.00 0.00 41.16 4.30
4083 4265 0.577269 CGATCCATTTCGTCTTCCGC 59.423 55.000 0.00 0.00 36.19 5.54
4084 4266 0.938008 GATCCATTTCGTCTTCCGCC 59.062 55.000 0.00 0.00 36.19 6.13
4085 4267 0.251916 ATCCATTTCGTCTTCCGCCA 59.748 50.000 0.00 0.00 36.19 5.69
4086 4268 0.251916 TCCATTTCGTCTTCCGCCAT 59.748 50.000 0.00 0.00 36.19 4.40
4087 4269 0.657840 CCATTTCGTCTTCCGCCATC 59.342 55.000 0.00 0.00 36.19 3.51
4088 4270 0.657840 CATTTCGTCTTCCGCCATCC 59.342 55.000 0.00 0.00 36.19 3.51
4089 4271 0.810031 ATTTCGTCTTCCGCCATCCG 60.810 55.000 0.00 0.00 36.19 4.18
4090 4272 2.162338 TTTCGTCTTCCGCCATCCGT 62.162 55.000 0.00 0.00 36.19 4.69
4091 4273 2.125673 CGTCTTCCGCCATCCGTT 60.126 61.111 0.00 0.00 34.38 4.44
4092 4274 1.740296 CGTCTTCCGCCATCCGTTT 60.740 57.895 0.00 0.00 34.38 3.60
4093 4275 1.794222 GTCTTCCGCCATCCGTTTG 59.206 57.895 0.00 0.00 34.38 2.93
4094 4276 1.376683 TCTTCCGCCATCCGTTTGG 60.377 57.895 0.00 0.00 39.94 3.28
4095 4277 2.360600 TTCCGCCATCCGTTTGGG 60.361 61.111 3.35 0.00 37.24 4.12
4096 4278 3.198953 TTCCGCCATCCGTTTGGGT 62.199 57.895 3.35 0.00 37.24 4.51
4097 4279 3.131478 CCGCCATCCGTTTGGGTC 61.131 66.667 3.35 0.00 37.24 4.46
4098 4280 3.496131 CGCCATCCGTTTGGGTCG 61.496 66.667 3.35 0.00 37.24 4.79
4100 4282 3.131478 CCATCCGTTTGGGTCGGC 61.131 66.667 0.00 0.00 46.49 5.54
4101 4283 3.496131 CATCCGTTTGGGTCGGCG 61.496 66.667 0.00 0.00 46.49 6.46
4112 4294 3.641986 GTCGGCGCGGACACAAAA 61.642 61.111 34.74 4.76 36.91 2.44
4113 4295 2.895865 TCGGCGCGGACACAAAAA 60.896 55.556 14.27 0.00 0.00 1.94
4114 4296 2.426752 CGGCGCGGACACAAAAAG 60.427 61.111 9.72 0.00 0.00 2.27
4115 4297 2.729491 GGCGCGGACACAAAAAGC 60.729 61.111 8.83 0.00 0.00 3.51
4117 4299 2.426752 CGCGGACACAAAAAGCGG 60.427 61.111 0.00 0.00 46.06 5.52
4118 4300 2.719354 GCGGACACAAAAAGCGGT 59.281 55.556 0.00 0.00 0.00 5.68
4119 4301 1.370051 GCGGACACAAAAAGCGGTC 60.370 57.895 0.00 0.00 0.00 4.79
4120 4302 1.281656 CGGACACAAAAAGCGGTCC 59.718 57.895 0.00 0.00 44.97 4.46
4123 4305 1.835121 GACACAAAAAGCGGTCCAAC 58.165 50.000 0.00 0.00 0.00 3.77
4124 4306 0.099791 ACACAAAAAGCGGTCCAACG 59.900 50.000 0.00 0.00 0.00 4.10
4135 4317 4.287781 TCCAACGCGCCGACTCAA 62.288 61.111 5.73 0.00 0.00 3.02
4136 4318 3.342627 CCAACGCGCCGACTCAAA 61.343 61.111 5.73 0.00 0.00 2.69
4137 4319 2.127758 CAACGCGCCGACTCAAAC 60.128 61.111 5.73 0.00 0.00 2.93
4138 4320 2.586635 AACGCGCCGACTCAAACA 60.587 55.556 5.73 0.00 0.00 2.83
4139 4321 2.877974 AACGCGCCGACTCAAACAC 61.878 57.895 5.73 0.00 0.00 3.32
4140 4322 4.409588 CGCGCCGACTCAAACACG 62.410 66.667 0.00 0.00 0.00 4.49
4141 4323 3.335534 GCGCCGACTCAAACACGT 61.336 61.111 0.00 0.00 0.00 4.49
4142 4324 2.544359 CGCCGACTCAAACACGTG 59.456 61.111 15.48 15.48 0.00 4.49
4143 4325 2.235016 CGCCGACTCAAACACGTGT 61.235 57.895 17.22 17.22 0.00 4.49
4144 4326 1.563173 GCCGACTCAAACACGTGTC 59.437 57.895 23.61 7.23 0.00 3.67
4145 4327 1.828331 GCCGACTCAAACACGTGTCC 61.828 60.000 23.61 6.40 0.00 4.02
4146 4328 1.545614 CCGACTCAAACACGTGTCCG 61.546 60.000 23.61 15.96 40.83 4.79
4147 4329 1.563173 GACTCAAACACGTGTCCGC 59.437 57.895 23.61 4.99 37.70 5.54
4148 4330 0.874607 GACTCAAACACGTGTCCGCT 60.875 55.000 23.61 2.59 37.70 5.52
4149 4331 0.461339 ACTCAAACACGTGTCCGCTT 60.461 50.000 23.61 9.78 37.70 4.68
4150 4332 0.655733 CTCAAACACGTGTCCGCTTT 59.344 50.000 23.61 9.36 37.70 3.51
4151 4333 1.063469 CTCAAACACGTGTCCGCTTTT 59.937 47.619 23.61 8.55 37.70 2.27
4152 4334 1.062880 TCAAACACGTGTCCGCTTTTC 59.937 47.619 23.61 0.00 37.70 2.29
4153 4335 0.027063 AAACACGTGTCCGCTTTTCG 59.973 50.000 23.61 0.00 37.70 3.46
4154 4336 1.085501 AACACGTGTCCGCTTTTCGT 61.086 50.000 23.61 0.00 37.70 3.85
4155 4337 1.200839 CACGTGTCCGCTTTTCGTC 59.799 57.895 7.58 0.00 37.70 4.20
4156 4338 1.952635 ACGTGTCCGCTTTTCGTCC 60.953 57.895 0.00 0.00 37.70 4.79
4157 4339 2.851104 GTGTCCGCTTTTCGTCCG 59.149 61.111 0.00 0.00 36.19 4.79
4158 4340 1.952635 GTGTCCGCTTTTCGTCCGT 60.953 57.895 0.00 0.00 36.19 4.69
4159 4341 1.952133 TGTCCGCTTTTCGTCCGTG 60.952 57.895 0.00 0.00 36.19 4.94
4160 4342 2.356553 TCCGCTTTTCGTCCGTGG 60.357 61.111 0.00 0.00 36.19 4.94
4161 4343 3.419759 CCGCTTTTCGTCCGTGGG 61.420 66.667 0.00 0.00 36.19 4.61
4162 4344 4.084888 CGCTTTTCGTCCGTGGGC 62.085 66.667 0.00 0.00 0.00 5.36
4163 4345 4.084888 GCTTTTCGTCCGTGGGCG 62.085 66.667 6.55 6.55 37.95 6.13
4164 4346 2.356553 CTTTTCGTCCGTGGGCGA 60.357 61.111 12.21 12.21 41.33 5.54
4165 4347 2.662527 TTTTCGTCCGTGGGCGAC 60.663 61.111 16.17 0.00 41.33 5.19
4180 4362 3.820843 GACCCATTCCCGGCCCAT 61.821 66.667 0.00 0.00 0.00 4.00
4181 4363 3.355344 ACCCATTCCCGGCCCATT 61.355 61.111 0.00 0.00 0.00 3.16
4182 4364 2.042025 CCCATTCCCGGCCCATTT 60.042 61.111 0.00 0.00 0.00 2.32
4183 4365 1.688884 CCCATTCCCGGCCCATTTT 60.689 57.895 0.00 0.00 0.00 1.82
4184 4366 1.271127 CCCATTCCCGGCCCATTTTT 61.271 55.000 0.00 0.00 0.00 1.94
4185 4367 1.490574 CCATTCCCGGCCCATTTTTA 58.509 50.000 0.00 0.00 0.00 1.52
4186 4368 1.412343 CCATTCCCGGCCCATTTTTAG 59.588 52.381 0.00 0.00 0.00 1.85
4187 4369 1.119684 ATTCCCGGCCCATTTTTAGC 58.880 50.000 0.00 0.00 0.00 3.09
4188 4370 0.973496 TTCCCGGCCCATTTTTAGCC 60.973 55.000 0.00 0.00 43.53 3.93
4191 4373 4.347865 GGCCCATTTTTAGCCGGA 57.652 55.556 5.05 0.00 36.84 5.14
4192 4374 2.820845 GGCCCATTTTTAGCCGGAT 58.179 52.632 5.05 0.00 36.84 4.18
4193 4375 1.119684 GGCCCATTTTTAGCCGGATT 58.880 50.000 5.05 0.00 36.84 3.01
4194 4376 1.484653 GGCCCATTTTTAGCCGGATTT 59.515 47.619 5.05 0.00 36.84 2.17
4195 4377 2.549926 GCCCATTTTTAGCCGGATTTG 58.450 47.619 5.05 0.00 0.00 2.32
4196 4378 2.549926 CCCATTTTTAGCCGGATTTGC 58.450 47.619 5.05 0.00 0.00 3.68
4197 4379 2.192624 CCATTTTTAGCCGGATTTGCG 58.807 47.619 5.05 0.00 0.00 4.85
4198 4380 2.416701 CCATTTTTAGCCGGATTTGCGT 60.417 45.455 5.05 0.00 0.00 5.24
4199 4381 2.622546 TTTTTAGCCGGATTTGCGTC 57.377 45.000 5.05 0.00 0.00 5.19
4200 4382 0.444651 TTTTAGCCGGATTTGCGTCG 59.555 50.000 5.05 0.00 0.00 5.12
4201 4383 1.363145 TTTAGCCGGATTTGCGTCGG 61.363 55.000 5.05 0.00 45.84 4.79
4242 4424 3.144193 CGCTCGCCCTCTCCTCTT 61.144 66.667 0.00 0.00 0.00 2.85
4243 4425 2.811799 GCTCGCCCTCTCCTCTTC 59.188 66.667 0.00 0.00 0.00 2.87
4244 4426 2.791868 GCTCGCCCTCTCCTCTTCC 61.792 68.421 0.00 0.00 0.00 3.46
4245 4427 2.042843 TCGCCCTCTCCTCTTCCC 60.043 66.667 0.00 0.00 0.00 3.97
4246 4428 3.532155 CGCCCTCTCCTCTTCCCG 61.532 72.222 0.00 0.00 0.00 5.14
4247 4429 3.157949 GCCCTCTCCTCTTCCCGG 61.158 72.222 0.00 0.00 0.00 5.73
4248 4430 2.364961 CCCTCTCCTCTTCCCGGT 59.635 66.667 0.00 0.00 0.00 5.28
4249 4431 1.758906 CCCTCTCCTCTTCCCGGTC 60.759 68.421 0.00 0.00 0.00 4.79
4250 4432 1.758906 CCTCTCCTCTTCCCGGTCC 60.759 68.421 0.00 0.00 0.00 4.46
4251 4433 1.758906 CTCTCCTCTTCCCGGTCCC 60.759 68.421 0.00 0.00 0.00 4.46
4252 4434 3.148279 CTCCTCTTCCCGGTCCCG 61.148 72.222 0.00 0.00 39.44 5.14
4255 4437 4.148825 CTCTTCCCGGTCCCGCTG 62.149 72.222 0.00 0.00 38.24 5.18
4269 4451 2.672996 GCTGGTCGGTGGCACATT 60.673 61.111 20.82 0.00 44.52 2.71
4270 4452 2.981560 GCTGGTCGGTGGCACATTG 61.982 63.158 20.82 8.68 44.52 2.82
4271 4453 2.981560 CTGGTCGGTGGCACATTGC 61.982 63.158 20.82 6.09 44.52 3.56
4280 4462 2.440980 GCACATTGCCCTCTCCCC 60.441 66.667 0.00 0.00 37.42 4.81
4281 4463 3.089838 CACATTGCCCTCTCCCCA 58.910 61.111 0.00 0.00 0.00 4.96
4282 4464 1.616921 CACATTGCCCTCTCCCCAT 59.383 57.895 0.00 0.00 0.00 4.00
4283 4465 0.466922 CACATTGCCCTCTCCCCATC 60.467 60.000 0.00 0.00 0.00 3.51
4284 4466 1.152368 CATTGCCCTCTCCCCATCC 59.848 63.158 0.00 0.00 0.00 3.51
4285 4467 1.309013 ATTGCCCTCTCCCCATCCA 60.309 57.895 0.00 0.00 0.00 3.41
4286 4468 0.925720 ATTGCCCTCTCCCCATCCAA 60.926 55.000 0.00 0.00 0.00 3.53
4287 4469 1.863155 TTGCCCTCTCCCCATCCAAC 61.863 60.000 0.00 0.00 0.00 3.77
4288 4470 2.308722 GCCCTCTCCCCATCCAACA 61.309 63.158 0.00 0.00 0.00 3.33
4289 4471 1.649271 GCCCTCTCCCCATCCAACAT 61.649 60.000 0.00 0.00 0.00 2.71
4290 4472 0.475906 CCCTCTCCCCATCCAACATC 59.524 60.000 0.00 0.00 0.00 3.06
4291 4473 0.107456 CCTCTCCCCATCCAACATCG 59.893 60.000 0.00 0.00 0.00 3.84
4292 4474 0.533755 CTCTCCCCATCCAACATCGC 60.534 60.000 0.00 0.00 0.00 4.58
4293 4475 1.526917 CTCCCCATCCAACATCGCC 60.527 63.158 0.00 0.00 0.00 5.54
4294 4476 2.519302 CCCCATCCAACATCGCCC 60.519 66.667 0.00 0.00 0.00 6.13
4295 4477 2.519302 CCCATCCAACATCGCCCC 60.519 66.667 0.00 0.00 0.00 5.80
4296 4478 2.597340 CCATCCAACATCGCCCCT 59.403 61.111 0.00 0.00 0.00 4.79
4297 4479 1.526917 CCATCCAACATCGCCCCTC 60.527 63.158 0.00 0.00 0.00 4.30
4298 4480 1.889105 CATCCAACATCGCCCCTCG 60.889 63.158 0.00 0.00 40.15 4.63
4299 4481 3.757248 ATCCAACATCGCCCCTCGC 62.757 63.158 0.00 0.00 38.27 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.663826 AACCGAGAATGAGCTGTCTC 57.336 50.000 0.00 0.00 39.78 3.36
1 2 3.409026 AAAACCGAGAATGAGCTGTCT 57.591 42.857 0.00 0.00 0.00 3.41
2 3 3.251004 ACAAAAACCGAGAATGAGCTGTC 59.749 43.478 0.00 0.00 0.00 3.51
3 4 3.214328 ACAAAAACCGAGAATGAGCTGT 58.786 40.909 0.00 0.00 0.00 4.40
4 5 3.365364 GGACAAAAACCGAGAATGAGCTG 60.365 47.826 0.00 0.00 0.00 4.24
5 6 2.814336 GGACAAAAACCGAGAATGAGCT 59.186 45.455 0.00 0.00 0.00 4.09
6 7 2.095212 GGGACAAAAACCGAGAATGAGC 60.095 50.000 0.00 0.00 0.00 4.26
7 8 2.488153 GGGGACAAAAACCGAGAATGAG 59.512 50.000 0.00 0.00 0.00 2.90
8 9 2.158593 TGGGGACAAAAACCGAGAATGA 60.159 45.455 0.00 0.00 37.44 2.57
9 10 2.030274 GTGGGGACAAAAACCGAGAATG 60.030 50.000 0.00 0.00 46.06 2.67
10 11 2.235891 GTGGGGACAAAAACCGAGAAT 58.764 47.619 0.00 0.00 46.06 2.40
11 12 1.682740 GTGGGGACAAAAACCGAGAA 58.317 50.000 0.00 0.00 46.06 2.87
12 13 0.179012 GGTGGGGACAAAAACCGAGA 60.179 55.000 0.00 0.00 46.06 4.04
13 14 2.337361 GGTGGGGACAAAAACCGAG 58.663 57.895 0.00 0.00 46.06 4.63
14 15 4.583086 GGTGGGGACAAAAACCGA 57.417 55.556 0.00 0.00 46.06 4.69
16 17 1.334160 AATCGGTGGGGACAAAAACC 58.666 50.000 0.00 0.00 46.06 3.27
17 18 3.462483 AAAATCGGTGGGGACAAAAAC 57.538 42.857 0.00 0.00 46.06 2.43
18 19 3.432326 CCAAAAATCGGTGGGGACAAAAA 60.432 43.478 0.00 0.00 46.06 1.94
19 20 2.103263 CCAAAAATCGGTGGGGACAAAA 59.897 45.455 0.00 0.00 46.06 2.44
20 21 1.689273 CCAAAAATCGGTGGGGACAAA 59.311 47.619 0.00 0.00 46.06 2.83
21 22 1.333177 CCAAAAATCGGTGGGGACAA 58.667 50.000 0.00 0.00 46.06 3.18
22 23 3.043998 CCAAAAATCGGTGGGGACA 57.956 52.632 0.00 0.00 38.70 4.02
27 28 1.202348 GAAGCTCCCAAAAATCGGTGG 59.798 52.381 0.00 0.00 34.44 4.61
28 29 1.202348 GGAAGCTCCCAAAAATCGGTG 59.798 52.381 0.00 0.00 0.00 4.94
29 30 1.545841 GGAAGCTCCCAAAAATCGGT 58.454 50.000 0.00 0.00 0.00 4.69
40 41 1.276622 TACTGGTTGAGGGAAGCTCC 58.723 55.000 0.00 0.00 35.23 4.70
41 42 3.636153 AATACTGGTTGAGGGAAGCTC 57.364 47.619 0.00 0.00 32.90 4.09
42 43 4.202567 TGAAAATACTGGTTGAGGGAAGCT 60.203 41.667 0.00 0.00 32.90 3.74
43 44 4.079253 TGAAAATACTGGTTGAGGGAAGC 58.921 43.478 0.00 0.00 0.00 3.86
44 45 6.840780 AATGAAAATACTGGTTGAGGGAAG 57.159 37.500 0.00 0.00 0.00 3.46
45 46 7.610580 AAAATGAAAATACTGGTTGAGGGAA 57.389 32.000 0.00 0.00 0.00 3.97
46 47 7.508977 AGAAAAATGAAAATACTGGTTGAGGGA 59.491 33.333 0.00 0.00 0.00 4.20
47 48 7.599998 CAGAAAAATGAAAATACTGGTTGAGGG 59.400 37.037 0.00 0.00 0.00 4.30
48 49 8.143835 ACAGAAAAATGAAAATACTGGTTGAGG 58.856 33.333 0.00 0.00 0.00 3.86
49 50 9.533253 AACAGAAAAATGAAAATACTGGTTGAG 57.467 29.630 0.00 0.00 0.00 3.02
50 51 9.883142 AAACAGAAAAATGAAAATACTGGTTGA 57.117 25.926 0.00 0.00 33.54 3.18
62 63 9.487790 ACAGAAAACAGAAAACAGAAAAATGAA 57.512 25.926 0.00 0.00 0.00 2.57
63 64 9.487790 AACAGAAAACAGAAAACAGAAAAATGA 57.512 25.926 0.00 0.00 0.00 2.57
264 265 5.461737 TGATTTTCCAAAACAATCACGAAGC 59.538 36.000 0.00 0.00 33.03 3.86
318 321 9.528018 GTCACAAAATGTTCCTAATTTCAGAAA 57.472 29.630 0.00 0.00 0.00 2.52
330 333 3.105203 CACGTGTGTCACAAAATGTTCC 58.895 45.455 7.38 0.00 33.40 3.62
340 343 3.398954 AACAATGTTCACGTGTGTCAC 57.601 42.857 16.51 8.96 0.00 3.67
347 350 5.290643 CACCAATTCAAAACAATGTTCACGT 59.709 36.000 0.00 0.00 0.00 4.49
357 360 8.327941 TCAAAACAATTCACCAATTCAAAACA 57.672 26.923 0.00 0.00 28.97 2.83
376 379 9.393249 TCAGAAAATATGTTTGTCGATCAAAAC 57.607 29.630 12.60 12.30 45.84 2.43
377 380 9.958234 TTCAGAAAATATGTTTGTCGATCAAAA 57.042 25.926 12.60 1.79 45.84 2.44
378 381 9.958234 TTTCAGAAAATATGTTTGTCGATCAAA 57.042 25.926 8.47 8.47 42.79 2.69
386 389 9.743057 TTCGTGAATTTCAGAAAATATGTTTGT 57.257 25.926 0.00 0.00 33.93 2.83
388 391 9.743057 TGTTCGTGAATTTCAGAAAATATGTTT 57.257 25.926 0.00 0.00 33.93 2.83
617 626 8.781067 TCTGTAGATTCAAAATGTTTTTCACG 57.219 30.769 0.00 0.00 0.00 4.35
676 685 8.983724 TGCTTAAAATTTTGAAAAATAGTCGGG 58.016 29.630 13.76 0.00 37.62 5.14
756 765 3.126171 TCGGGATTACAAAAATGCTCGTG 59.874 43.478 0.00 0.00 0.00 4.35
758 767 4.349663 TTCGGGATTACAAAAATGCTCG 57.650 40.909 0.00 0.00 0.00 5.03
892 902 3.240134 GAGGTCCCTCTGCACGCAA 62.240 63.158 6.08 0.00 39.80 4.85
969 979 0.188342 TTCTTGGGCTTTCCTGGCTT 59.812 50.000 0.00 0.00 36.20 4.35
1357 1370 7.816640 TGCTGGAAAATTAGCAGTAGTTTAAG 58.183 34.615 0.00 0.00 44.36 1.85
1400 1413 1.528586 CAGTTCTGAACCAGCACGAAG 59.471 52.381 16.48 0.00 33.19 3.79
1438 1451 4.737855 TCTACCACTAAATCCTCACTGC 57.262 45.455 0.00 0.00 0.00 4.40
1464 1477 7.761409 TGTGCCATGTTTGAACTATAGAATTC 58.239 34.615 6.78 0.00 0.00 2.17
1481 1494 1.372582 AATACGCTGACTGTGCCATG 58.627 50.000 0.00 0.00 0.00 3.66
1515 1541 2.143925 GACACTACAGCAGGAACAACC 58.856 52.381 0.00 0.00 39.35 3.77
1522 1548 2.029828 AGAAAGTCGACACTACAGCAGG 60.030 50.000 19.50 0.00 30.14 4.85
1523 1549 3.290308 AGAAAGTCGACACTACAGCAG 57.710 47.619 19.50 0.00 30.14 4.24
1536 1562 4.875561 ACCAGAGACCACTAAGAAAGTC 57.124 45.455 0.00 0.00 35.76 3.01
1581 1615 3.713826 ATCGAAACACTAACCCCATGT 57.286 42.857 0.00 0.00 0.00 3.21
1585 1619 1.129811 CGCAATCGAAACACTAACCCC 59.870 52.381 0.00 0.00 38.10 4.95
1599 1633 0.674895 AACAGTCTGGCCTCGCAATC 60.675 55.000 3.32 0.00 0.00 2.67
1606 1640 2.887151 AGCAAATAACAGTCTGGCCT 57.113 45.000 3.32 0.00 0.00 5.19
1632 1672 5.006165 GCTAGAATCAAATCGACCAACTCTG 59.994 44.000 0.00 0.00 0.00 3.35
1732 1778 5.294552 GGACATGTCATTCTAAACTACTGGC 59.705 44.000 26.47 0.00 0.00 4.85
1749 1800 2.832129 ACAGACAATAGACCGGACATGT 59.168 45.455 9.46 9.21 0.00 3.21
1788 1839 3.023832 CAGAAAACAACACCAGTTCCCT 58.976 45.455 0.00 0.00 35.28 4.20
1943 2004 9.722056 CTAATATGTTGAATGCAGAACTAAACC 57.278 33.333 0.00 0.00 0.00 3.27
1976 2037 7.175104 ACCCTCATTGTGTACATCAAACTAAT 58.825 34.615 12.68 0.00 0.00 1.73
2020 2081 3.273434 ACATGGTGCACAAGTAGCATAG 58.727 45.455 20.43 8.74 44.89 2.23
2037 2098 5.550232 TTTCTAGCACAAGCACATACATG 57.450 39.130 0.00 0.00 45.49 3.21
2070 2131 5.422970 TGCTCTAAGAAATGGATGCCAATTT 59.577 36.000 0.00 0.00 36.95 1.82
2085 2155 5.952347 TCTCACCTTATCTTGTGCTCTAAGA 59.048 40.000 0.00 0.00 38.42 2.10
2087 2157 6.605471 TTCTCACCTTATCTTGTGCTCTAA 57.395 37.500 0.00 0.00 32.51 2.10
2088 2158 6.605471 TTTCTCACCTTATCTTGTGCTCTA 57.395 37.500 0.00 0.00 32.51 2.43
2089 2159 5.489792 TTTCTCACCTTATCTTGTGCTCT 57.510 39.130 0.00 0.00 32.51 4.09
2091 2161 7.341805 ACATATTTCTCACCTTATCTTGTGCT 58.658 34.615 0.00 0.00 32.51 4.40
2092 2162 7.559590 ACATATTTCTCACCTTATCTTGTGC 57.440 36.000 0.00 0.00 32.51 4.57
2127 2197 2.313317 CAGGATAATGGCCACAGCAAT 58.687 47.619 8.16 0.00 42.56 3.56
2128 2198 1.005805 ACAGGATAATGGCCACAGCAA 59.994 47.619 8.16 0.00 42.56 3.91
2136 2206 3.248602 CGCAGTAAGAACAGGATAATGGC 59.751 47.826 0.00 0.00 0.00 4.40
2138 2208 4.271049 CACCGCAGTAAGAACAGGATAATG 59.729 45.833 0.00 0.00 0.00 1.90
2156 2226 1.529865 GTCTCCTAACAAACACACCGC 59.470 52.381 0.00 0.00 0.00 5.68
2158 2228 5.850614 TCTAAGTCTCCTAACAAACACACC 58.149 41.667 0.00 0.00 0.00 4.16
2172 2242 9.403583 CCCAGATATATAGTCCTTCTAAGTCTC 57.596 40.741 0.00 0.00 31.94 3.36
2205 2275 3.846588 ACCTATTTCCTCCTGCAAGAAGA 59.153 43.478 0.00 0.00 34.07 2.87
2571 2686 7.715686 AGAAAGGGAAAGTTATATCCATTCGAC 59.284 37.037 0.00 0.00 38.67 4.20
2608 2725 5.652994 TTCCGCCAATAAGTAATTTTGCT 57.347 34.783 0.00 0.00 0.00 3.91
2624 2741 4.455877 AGCATATTAACAAGCTATTCCGCC 59.544 41.667 0.00 0.00 35.19 6.13
2664 2791 9.388506 AGCACATATGATAATATCTGCTTTACC 57.611 33.333 10.38 0.00 35.99 2.85
2992 3137 6.135290 TCAGCCATATATGTGCTTTTGTTC 57.865 37.500 19.86 0.00 33.87 3.18
3027 3181 6.148480 GCATATACCAGGAATGACAACAGATC 59.852 42.308 0.00 0.00 0.00 2.75
3089 3243 4.095483 CACTGGAGGCACATTCTACAAATC 59.905 45.833 0.00 0.00 0.00 2.17
3218 3374 5.825151 CCTCTTCACTTTCTCCTTGTCTTTT 59.175 40.000 0.00 0.00 0.00 2.27
3269 3425 2.440539 TCTCAGTTTCGCTCTTCCAC 57.559 50.000 0.00 0.00 0.00 4.02
3343 3499 8.138928 TCTACCTAGTGTACAGTTACAGACTA 57.861 38.462 8.85 0.00 38.95 2.59
3374 3531 2.683362 GAGCTTACCCAGGCAACAATAC 59.317 50.000 0.00 0.00 41.41 1.89
3376 3533 1.839424 GAGCTTACCCAGGCAACAAT 58.161 50.000 0.00 0.00 41.41 2.71
3378 3535 1.003839 CGAGCTTACCCAGGCAACA 60.004 57.895 0.00 0.00 41.41 3.33
3379 3536 0.248289 TACGAGCTTACCCAGGCAAC 59.752 55.000 0.00 0.00 0.00 4.17
3387 3544 1.478137 CGCAGTGATACGAGCTTACC 58.522 55.000 0.00 0.00 0.00 2.85
3413 3570 2.666317 AGAAACAAACCTTGGGACCAG 58.334 47.619 0.00 0.00 34.12 4.00
3418 3575 5.236263 GCAAATACAAGAAACAAACCTTGGG 59.764 40.000 0.00 0.00 42.86 4.12
3422 3579 6.220726 ACTGCAAATACAAGAAACAAACCT 57.779 33.333 0.00 0.00 0.00 3.50
3423 3580 6.312672 ACAACTGCAAATACAAGAAACAAACC 59.687 34.615 0.00 0.00 0.00 3.27
3424 3581 7.275560 AGACAACTGCAAATACAAGAAACAAAC 59.724 33.333 0.00 0.00 0.00 2.93
3447 3604 1.021390 CCAATCCGAGTGTGGCAGAC 61.021 60.000 6.68 6.68 0.00 3.51
3469 3641 5.471797 TGACTTCGCTGGAAACATTTTATCA 59.528 36.000 0.00 0.00 41.51 2.15
3471 3643 5.106157 CCTGACTTCGCTGGAAACATTTTAT 60.106 40.000 0.00 0.00 41.51 1.40
3486 3658 8.371053 CGAGTAATTTACTTAAACCTGACTTCG 58.629 37.037 10.32 2.00 39.59 3.79
3488 3660 7.605309 CCCGAGTAATTTACTTAAACCTGACTT 59.395 37.037 10.32 0.00 39.59 3.01
3489 3661 7.101700 CCCGAGTAATTTACTTAAACCTGACT 58.898 38.462 10.32 0.00 39.59 3.41
3490 3662 6.183360 GCCCGAGTAATTTACTTAAACCTGAC 60.183 42.308 10.32 0.00 39.59 3.51
3491 3663 5.876460 GCCCGAGTAATTTACTTAAACCTGA 59.124 40.000 10.32 0.00 39.59 3.86
3493 3665 5.188434 GGCCCGAGTAATTTACTTAAACCT 58.812 41.667 10.32 0.00 39.59 3.50
3494 3666 4.943093 TGGCCCGAGTAATTTACTTAAACC 59.057 41.667 10.32 10.37 39.59 3.27
3495 3667 6.541278 AGATGGCCCGAGTAATTTACTTAAAC 59.459 38.462 10.32 2.28 39.59 2.01
3496 3668 6.655930 AGATGGCCCGAGTAATTTACTTAAA 58.344 36.000 10.32 0.00 39.59 1.52
3499 3671 4.772886 AGATGGCCCGAGTAATTTACTT 57.227 40.909 10.32 0.00 39.59 2.24
3505 3679 2.024414 GCAAAAGATGGCCCGAGTAAT 58.976 47.619 0.00 0.00 0.00 1.89
3515 3689 1.200020 GTCCCGTGAAGCAAAAGATGG 59.800 52.381 0.00 0.00 0.00 3.51
3517 3691 2.270352 TGTCCCGTGAAGCAAAAGAT 57.730 45.000 0.00 0.00 0.00 2.40
3545 3719 4.282703 ACACAGTTCAGTTACGGGTAGATT 59.717 41.667 0.00 0.00 0.00 2.40
3564 3738 1.792367 CGAGATTTCGCACAAGACACA 59.208 47.619 0.00 0.00 40.36 3.72
3575 3749 3.138304 TGGGAATTATGCCGAGATTTCG 58.862 45.455 0.00 0.00 46.29 3.46
3581 3755 2.498167 CTTCCTGGGAATTATGCCGAG 58.502 52.381 2.28 0.00 40.61 4.63
3583 3757 0.954452 GCTTCCTGGGAATTATGCCG 59.046 55.000 2.28 0.00 40.61 5.69
3595 3769 2.166459 TCTGTAGTTCGGATGCTTCCTG 59.834 50.000 16.03 9.90 40.17 3.86
3597 3771 2.961526 TCTGTAGTTCGGATGCTTCC 57.038 50.000 8.60 8.60 38.81 3.46
3603 3777 1.482593 CAGGGCTTCTGTAGTTCGGAT 59.517 52.381 0.49 0.00 38.64 4.18
3605 3779 0.895530 TCAGGGCTTCTGTAGTTCGG 59.104 55.000 7.32 0.00 43.76 4.30
3611 3785 4.777896 AGTTCAGTATTCAGGGCTTCTGTA 59.222 41.667 7.32 0.00 43.76 2.74
3613 3787 3.937706 CAGTTCAGTATTCAGGGCTTCTG 59.062 47.826 1.98 1.98 44.68 3.02
3687 3866 9.813446 GATTAGCAAGAATCCAATGAGAATTTT 57.187 29.630 0.00 0.00 30.81 1.82
3694 3873 9.281371 CTTCTATGATTAGCAAGAATCCAATGA 57.719 33.333 4.22 0.00 35.34 2.57
3734 3913 5.070714 CCCCTTGATCAAATGCATAATTGGA 59.929 40.000 9.88 0.00 32.54 3.53
3768 3947 6.899393 ACATCTCCAGATTTGCTAAAACAA 57.101 33.333 0.00 0.00 31.21 2.83
3796 3975 1.754803 CATTACTAGACCCACCTCGCA 59.245 52.381 0.00 0.00 0.00 5.10
3797 3976 1.755380 ACATTACTAGACCCACCTCGC 59.245 52.381 0.00 0.00 0.00 5.03
3798 3977 2.100916 CCACATTACTAGACCCACCTCG 59.899 54.545 0.00 0.00 0.00 4.63
3799 3978 2.158943 GCCACATTACTAGACCCACCTC 60.159 54.545 0.00 0.00 0.00 3.85
3800 3979 1.838077 GCCACATTACTAGACCCACCT 59.162 52.381 0.00 0.00 0.00 4.00
3861 4041 0.460284 CGGATCTGTTCTTCCCCGTG 60.460 60.000 0.00 0.00 33.02 4.94
3863 4043 1.144057 CCGGATCTGTTCTTCCCCG 59.856 63.158 0.00 0.00 36.98 5.73
3864 4044 0.178301 GACCGGATCTGTTCTTCCCC 59.822 60.000 9.46 0.00 0.00 4.81
3865 4045 0.178301 GGACCGGATCTGTTCTTCCC 59.822 60.000 9.46 0.00 0.00 3.97
3866 4046 1.134670 CAGGACCGGATCTGTTCTTCC 60.135 57.143 9.46 0.00 0.00 3.46
3896 4076 6.098017 GCACAGGGTACTAATAATACGATCC 58.902 44.000 0.00 0.00 0.00 3.36
3925 4105 0.958876 GACAAGGCCCTGGTAAACGG 60.959 60.000 6.25 0.00 0.00 4.44
3926 4106 0.036306 AGACAAGGCCCTGGTAAACG 59.964 55.000 6.25 0.00 0.00 3.60
3927 4107 2.160205 GAAGACAAGGCCCTGGTAAAC 58.840 52.381 6.25 0.00 0.00 2.01
3928 4108 2.062636 AGAAGACAAGGCCCTGGTAAA 58.937 47.619 6.25 0.00 0.00 2.01
3978 4160 6.839124 ACCAAATAAAGACATGAGCATTGA 57.161 33.333 0.00 0.00 0.00 2.57
3986 4168 9.311916 TCTCAAACAAAACCAAATAAAGACATG 57.688 29.630 0.00 0.00 0.00 3.21
3990 4172 7.978975 CACCTCTCAAACAAAACCAAATAAAGA 59.021 33.333 0.00 0.00 0.00 2.52
4000 4182 3.288092 AGGGACACCTCTCAAACAAAAC 58.712 45.455 0.00 0.00 46.95 2.43
4013 4195 6.885922 ACTAGTAACAAATATGAGGGACACC 58.114 40.000 0.00 0.00 0.00 4.16
4014 4196 8.693625 AGTACTAGTAACAAATATGAGGGACAC 58.306 37.037 3.61 0.00 0.00 3.67
4015 4197 8.834004 AGTACTAGTAACAAATATGAGGGACA 57.166 34.615 3.61 0.00 0.00 4.02
4037 4219 9.298250 CCCATTAGAGTTGCTCTTATAGTAGTA 57.702 37.037 3.87 0.00 41.50 1.82
4038 4220 7.256012 GCCCATTAGAGTTGCTCTTATAGTAGT 60.256 40.741 3.87 0.00 41.50 2.73
4039 4221 7.093992 GCCCATTAGAGTTGCTCTTATAGTAG 58.906 42.308 3.87 0.00 41.50 2.57
4040 4222 6.294564 CGCCCATTAGAGTTGCTCTTATAGTA 60.295 42.308 3.87 0.00 41.50 1.82
4041 4223 5.509840 CGCCCATTAGAGTTGCTCTTATAGT 60.510 44.000 3.87 0.00 41.50 2.12
4042 4224 4.926238 CGCCCATTAGAGTTGCTCTTATAG 59.074 45.833 3.87 0.00 41.50 1.31
4043 4225 4.587262 TCGCCCATTAGAGTTGCTCTTATA 59.413 41.667 3.87 0.00 41.50 0.98
4044 4226 3.388024 TCGCCCATTAGAGTTGCTCTTAT 59.612 43.478 3.87 0.00 41.50 1.73
4045 4227 2.764010 TCGCCCATTAGAGTTGCTCTTA 59.236 45.455 3.87 0.00 41.50 2.10
4046 4228 1.555075 TCGCCCATTAGAGTTGCTCTT 59.445 47.619 3.87 0.00 41.50 2.85
4047 4229 1.195115 TCGCCCATTAGAGTTGCTCT 58.805 50.000 4.02 4.02 43.83 4.09
4048 4230 2.139118 GATCGCCCATTAGAGTTGCTC 58.861 52.381 0.00 0.00 0.00 4.26
4049 4231 1.202698 GGATCGCCCATTAGAGTTGCT 60.203 52.381 0.00 0.00 34.14 3.91
4050 4232 1.230324 GGATCGCCCATTAGAGTTGC 58.770 55.000 0.00 0.00 34.14 4.17
4051 4233 2.620251 TGGATCGCCCATTAGAGTTG 57.380 50.000 0.00 0.00 40.82 3.16
4061 4243 0.938008 GAAGACGAAATGGATCGCCC 59.062 55.000 0.00 0.00 46.51 6.13
4062 4244 0.938008 GGAAGACGAAATGGATCGCC 59.062 55.000 0.00 0.00 46.51 5.54
4075 4257 1.644786 CCAAACGGATGGCGGAAGAC 61.645 60.000 0.00 0.00 42.12 3.01
4076 4258 1.376683 CCAAACGGATGGCGGAAGA 60.377 57.895 0.00 0.00 32.78 2.87
4077 4259 2.406616 CCCAAACGGATGGCGGAAG 61.407 63.158 3.36 0.00 39.26 3.46
4078 4260 2.360600 CCCAAACGGATGGCGGAA 60.361 61.111 3.36 0.00 39.26 4.30
4079 4261 3.615509 GACCCAAACGGATGGCGGA 62.616 63.158 3.36 0.00 39.26 5.54
4080 4262 3.131478 GACCCAAACGGATGGCGG 61.131 66.667 3.36 0.00 39.26 6.13
4081 4263 3.496131 CGACCCAAACGGATGGCG 61.496 66.667 3.36 0.00 39.26 5.69
4095 4277 3.170810 TTTTTGTGTCCGCGCCGAC 62.171 57.895 20.04 20.04 0.00 4.79
4096 4278 2.887889 CTTTTTGTGTCCGCGCCGA 61.888 57.895 0.00 0.00 0.00 5.54
4097 4279 2.426752 CTTTTTGTGTCCGCGCCG 60.427 61.111 0.00 0.00 0.00 6.46
4098 4280 2.729491 GCTTTTTGTGTCCGCGCC 60.729 61.111 0.00 0.00 0.00 6.53
4099 4281 3.091022 CGCTTTTTGTGTCCGCGC 61.091 61.111 0.00 0.00 37.29 6.86
4100 4282 2.426752 CCGCTTTTTGTGTCCGCG 60.427 61.111 0.00 0.00 43.08 6.46
4101 4283 1.370051 GACCGCTTTTTGTGTCCGC 60.370 57.895 0.00 0.00 0.00 5.54
4102 4284 1.281656 GGACCGCTTTTTGTGTCCG 59.718 57.895 0.00 0.00 0.00 4.79
4103 4285 0.741915 TTGGACCGCTTTTTGTGTCC 59.258 50.000 0.00 0.00 0.00 4.02
4104 4286 1.835121 GTTGGACCGCTTTTTGTGTC 58.165 50.000 0.00 0.00 0.00 3.67
4105 4287 0.099791 CGTTGGACCGCTTTTTGTGT 59.900 50.000 0.00 0.00 0.00 3.72
4106 4288 2.866688 CGTTGGACCGCTTTTTGTG 58.133 52.632 0.00 0.00 0.00 3.33
4118 4300 3.793775 TTTGAGTCGGCGCGTTGGA 62.794 57.895 8.43 0.00 0.00 3.53
4119 4301 3.342627 TTTGAGTCGGCGCGTTGG 61.343 61.111 8.43 0.00 0.00 3.77
4120 4302 2.127758 GTTTGAGTCGGCGCGTTG 60.128 61.111 8.43 0.00 0.00 4.10
4121 4303 2.586635 TGTTTGAGTCGGCGCGTT 60.587 55.556 8.43 0.00 0.00 4.84
4122 4304 3.335534 GTGTTTGAGTCGGCGCGT 61.336 61.111 8.43 0.00 0.00 6.01
4123 4305 4.409588 CGTGTTTGAGTCGGCGCG 62.410 66.667 0.00 0.00 0.00 6.86
4124 4306 3.335534 ACGTGTTTGAGTCGGCGC 61.336 61.111 0.00 0.00 0.00 6.53
4125 4307 2.142418 GACACGTGTTTGAGTCGGCG 62.142 60.000 24.26 0.00 0.00 6.46
4126 4308 1.563173 GACACGTGTTTGAGTCGGC 59.437 57.895 24.26 2.24 0.00 5.54
4127 4309 1.545614 CGGACACGTGTTTGAGTCGG 61.546 60.000 24.26 9.18 34.81 4.79
4128 4310 1.844003 CGGACACGTGTTTGAGTCG 59.156 57.895 24.26 15.10 34.81 4.18
4129 4311 0.874607 AGCGGACACGTGTTTGAGTC 60.875 55.000 24.26 8.52 43.45 3.36
4130 4312 0.461339 AAGCGGACACGTGTTTGAGT 60.461 50.000 24.26 5.98 43.45 3.41
4131 4313 0.655733 AAAGCGGACACGTGTTTGAG 59.344 50.000 24.26 14.86 43.45 3.02
4132 4314 1.062880 GAAAAGCGGACACGTGTTTGA 59.937 47.619 24.26 0.00 43.45 2.69
4133 4315 1.462791 GAAAAGCGGACACGTGTTTG 58.537 50.000 24.26 18.64 43.45 2.93
4134 4316 0.027063 CGAAAAGCGGACACGTGTTT 59.973 50.000 24.26 11.89 43.45 2.83
4135 4317 1.085501 ACGAAAAGCGGACACGTGTT 61.086 50.000 24.26 4.27 46.49 3.32
4136 4318 1.485032 GACGAAAAGCGGACACGTGT 61.485 55.000 23.64 23.64 46.49 4.49
4137 4319 1.200839 GACGAAAAGCGGACACGTG 59.799 57.895 15.48 15.48 46.49 4.49
4138 4320 1.952635 GGACGAAAAGCGGACACGT 60.953 57.895 0.00 0.00 46.49 4.49
4139 4321 2.851104 GGACGAAAAGCGGACACG 59.149 61.111 0.00 0.00 46.49 4.49
4140 4322 1.952635 ACGGACGAAAAGCGGACAC 60.953 57.895 0.00 0.00 46.49 3.67
4141 4323 1.952133 CACGGACGAAAAGCGGACA 60.952 57.895 0.00 0.00 46.49 4.02
4142 4324 2.664436 CCACGGACGAAAAGCGGAC 61.664 63.158 0.00 0.00 46.49 4.79
4143 4325 2.356553 CCACGGACGAAAAGCGGA 60.357 61.111 0.00 0.00 46.49 5.54
4144 4326 3.419759 CCCACGGACGAAAAGCGG 61.420 66.667 0.00 0.00 46.49 5.52
4146 4328 4.084888 CGCCCACGGACGAAAAGC 62.085 66.667 0.00 0.00 34.97 3.51
4147 4329 2.356553 TCGCCCACGGACGAAAAG 60.357 61.111 0.00 0.00 40.63 2.27
4148 4330 2.662527 GTCGCCCACGGACGAAAA 60.663 61.111 0.00 0.00 40.47 2.29
4149 4331 4.668118 GGTCGCCCACGGACGAAA 62.668 66.667 0.00 0.00 40.47 3.46
4163 4345 2.871795 AAATGGGCCGGGAATGGGTC 62.872 60.000 2.18 0.00 0.00 4.46
4164 4346 2.469563 AAAATGGGCCGGGAATGGGT 62.470 55.000 2.18 0.00 0.00 4.51
4165 4347 1.271127 AAAAATGGGCCGGGAATGGG 61.271 55.000 2.18 0.00 0.00 4.00
4166 4348 1.412343 CTAAAAATGGGCCGGGAATGG 59.588 52.381 2.18 0.00 0.00 3.16
4167 4349 1.202521 GCTAAAAATGGGCCGGGAATG 60.203 52.381 2.18 0.00 0.00 2.67
4168 4350 1.119684 GCTAAAAATGGGCCGGGAAT 58.880 50.000 2.18 0.00 0.00 3.01
4169 4351 0.973496 GGCTAAAAATGGGCCGGGAA 60.973 55.000 2.18 0.00 36.37 3.97
4170 4352 1.380650 GGCTAAAAATGGGCCGGGA 60.381 57.895 2.18 0.00 36.37 5.14
4171 4353 3.216237 GGCTAAAAATGGGCCGGG 58.784 61.111 2.18 0.00 36.37 5.73
4174 4356 1.119684 AATCCGGCTAAAAATGGGCC 58.880 50.000 0.00 0.00 42.18 5.80
4175 4357 2.549926 CAAATCCGGCTAAAAATGGGC 58.450 47.619 0.00 0.00 0.00 5.36
4176 4358 2.549926 GCAAATCCGGCTAAAAATGGG 58.450 47.619 0.00 0.00 0.00 4.00
4177 4359 2.192624 CGCAAATCCGGCTAAAAATGG 58.807 47.619 0.00 0.00 0.00 3.16
4178 4360 2.851824 GACGCAAATCCGGCTAAAAATG 59.148 45.455 0.00 0.00 32.31 2.32
4179 4361 2.477189 CGACGCAAATCCGGCTAAAAAT 60.477 45.455 0.00 0.00 33.03 1.82
4180 4362 1.135916 CGACGCAAATCCGGCTAAAAA 60.136 47.619 0.00 0.00 33.03 1.94
4181 4363 0.444651 CGACGCAAATCCGGCTAAAA 59.555 50.000 0.00 0.00 33.03 1.52
4182 4364 1.363145 CCGACGCAAATCCGGCTAAA 61.363 55.000 0.00 0.00 36.62 1.85
4183 4365 1.812093 CCGACGCAAATCCGGCTAA 60.812 57.895 0.00 0.00 36.62 3.09
4184 4366 2.202824 CCGACGCAAATCCGGCTA 60.203 61.111 0.00 0.00 36.62 3.93
4225 4407 3.132481 GAAGAGGAGAGGGCGAGCG 62.132 68.421 0.00 0.00 0.00 5.03
4226 4408 2.791868 GGAAGAGGAGAGGGCGAGC 61.792 68.421 0.00 0.00 0.00 5.03
4227 4409 2.131067 GGGAAGAGGAGAGGGCGAG 61.131 68.421 0.00 0.00 0.00 5.03
4228 4410 2.042843 GGGAAGAGGAGAGGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
4229 4411 3.532155 CGGGAAGAGGAGAGGGCG 61.532 72.222 0.00 0.00 0.00 6.13
4230 4412 3.157949 CCGGGAAGAGGAGAGGGC 61.158 72.222 0.00 0.00 0.00 5.19
4231 4413 1.758906 GACCGGGAAGAGGAGAGGG 60.759 68.421 6.32 0.00 0.00 4.30
4232 4414 1.758906 GGACCGGGAAGAGGAGAGG 60.759 68.421 6.32 0.00 0.00 3.69
4233 4415 1.758906 GGGACCGGGAAGAGGAGAG 60.759 68.421 6.32 0.00 0.00 3.20
4234 4416 2.363361 GGGACCGGGAAGAGGAGA 59.637 66.667 6.32 0.00 0.00 3.71
4235 4417 3.148279 CGGGACCGGGAAGAGGAG 61.148 72.222 6.32 0.00 35.56 3.69
4238 4420 4.148825 CAGCGGGACCGGGAAGAG 62.149 72.222 13.21 0.00 40.19 2.85
4252 4434 2.672996 AATGTGCCACCGACCAGC 60.673 61.111 0.00 0.00 0.00 4.85
4253 4435 2.981560 GCAATGTGCCACCGACCAG 61.982 63.158 0.00 0.00 37.42 4.00
4254 4436 2.983030 GCAATGTGCCACCGACCA 60.983 61.111 0.00 0.00 37.42 4.02
4263 4445 2.440980 GGGGAGAGGGCAATGTGC 60.441 66.667 0.00 0.00 44.08 4.57
4264 4446 0.466922 GATGGGGAGAGGGCAATGTG 60.467 60.000 0.00 0.00 0.00 3.21
4265 4447 1.649271 GGATGGGGAGAGGGCAATGT 61.649 60.000 0.00 0.00 0.00 2.71
4266 4448 1.152368 GGATGGGGAGAGGGCAATG 59.848 63.158 0.00 0.00 0.00 2.82
4267 4449 0.925720 TTGGATGGGGAGAGGGCAAT 60.926 55.000 0.00 0.00 0.00 3.56
4268 4450 1.543642 TTGGATGGGGAGAGGGCAA 60.544 57.895 0.00 0.00 0.00 4.52
4269 4451 2.127065 TTGGATGGGGAGAGGGCA 59.873 61.111 0.00 0.00 0.00 5.36
4270 4452 1.649271 ATGTTGGATGGGGAGAGGGC 61.649 60.000 0.00 0.00 0.00 5.19
4271 4453 0.475906 GATGTTGGATGGGGAGAGGG 59.524 60.000 0.00 0.00 0.00 4.30
4272 4454 0.107456 CGATGTTGGATGGGGAGAGG 59.893 60.000 0.00 0.00 0.00 3.69
4273 4455 0.533755 GCGATGTTGGATGGGGAGAG 60.534 60.000 0.00 0.00 0.00 3.20
4274 4456 1.526887 GCGATGTTGGATGGGGAGA 59.473 57.895 0.00 0.00 0.00 3.71
4275 4457 1.526917 GGCGATGTTGGATGGGGAG 60.527 63.158 0.00 0.00 0.00 4.30
4276 4458 2.595095 GGCGATGTTGGATGGGGA 59.405 61.111 0.00 0.00 0.00 4.81
4277 4459 2.519302 GGGCGATGTTGGATGGGG 60.519 66.667 0.00 0.00 0.00 4.96
4278 4460 2.519302 GGGGCGATGTTGGATGGG 60.519 66.667 0.00 0.00 0.00 4.00
4279 4461 1.526917 GAGGGGCGATGTTGGATGG 60.527 63.158 0.00 0.00 0.00 3.51
4280 4462 1.889105 CGAGGGGCGATGTTGGATG 60.889 63.158 0.00 0.00 44.57 3.51
4281 4463 2.505982 CGAGGGGCGATGTTGGAT 59.494 61.111 0.00 0.00 44.57 3.41
4282 4464 4.467084 GCGAGGGGCGATGTTGGA 62.467 66.667 0.00 0.00 44.57 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.