Multiple sequence alignment - TraesCS6D01G278400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G278400 chr6D 100.000 2345 0 0 1 2345 386520281 386517937 0.000000e+00 4331.0
1 TraesCS6D01G278400 chr6D 95.667 300 13 0 1688 1987 386518506 386518207 1.260000e-132 483.0
2 TraesCS6D01G278400 chr6D 95.667 300 13 0 1776 2075 386518594 386518295 1.260000e-132 483.0
3 TraesCS6D01G278400 chr6D 94.340 212 12 0 1688 1899 386518418 386518207 2.250000e-85 326.0
4 TraesCS6D01G278400 chr6D 94.340 212 12 0 1864 2075 386518594 386518383 2.250000e-85 326.0
5 TraesCS6D01G278400 chr6D 93.220 118 8 0 1694 1811 386518324 386518207 8.610000e-40 174.0
6 TraesCS6D01G278400 chr6D 93.220 118 8 0 1958 2075 386518588 386518471 8.610000e-40 174.0
7 TraesCS6D01G278400 chr6D 100.000 36 0 0 1653 1688 386518472 386518437 1.500000e-07 67.6
8 TraesCS6D01G278400 chr6D 100.000 36 0 0 1653 1688 386518560 386518525 1.500000e-07 67.6
9 TraesCS6D01G278400 chr6D 100.000 36 0 0 1810 1845 386518629 386518594 1.500000e-07 67.6
10 TraesCS6D01G278400 chr6D 100.000 36 0 0 1722 1757 386518629 386518594 1.500000e-07 67.6
11 TraesCS6D01G278400 chr6A 86.358 1510 87 36 201 1688 531718251 531716839 0.000000e+00 1537.0
12 TraesCS6D01G278400 chr6A 90.863 197 14 1 201 393 531749179 531748983 6.430000e-66 261.0
13 TraesCS6D01G278400 chr6A 93.103 174 9 2 1982 2153 531716877 531716705 3.870000e-63 252.0
14 TraesCS6D01G278400 chr6B 85.152 1320 93 41 434 1688 577461859 577460578 0.000000e+00 1256.0
15 TraesCS6D01G278400 chr6B 88.889 369 18 10 1986 2345 577460615 577460261 1.290000e-117 433.0
16 TraesCS6D01G278400 chr6B 91.500 200 10 1 201 393 577469941 577469742 3.840000e-68 268.0
17 TraesCS6D01G278400 chr6B 93.548 93 2 3 1810 1899 577460615 577460524 4.060000e-28 135.0
18 TraesCS6D01G278400 chr6B 92.473 93 3 3 1722 1811 577460615 577460524 1.890000e-26 130.0
19 TraesCS6D01G278400 chr6B 91.398 93 4 3 1898 1987 577460615 577460524 8.800000e-25 124.0
20 TraesCS6D01G278400 chr6B 95.556 45 2 0 2142 2186 458812278 458812234 3.230000e-09 73.1
21 TraesCS6D01G278400 chr1B 92.697 178 13 0 1 178 245927321 245927144 8.310000e-65 257.0
22 TraesCS6D01G278400 chr2D 91.160 181 16 0 1 181 366141855 366141675 1.800000e-61 246.0
23 TraesCS6D01G278400 chr2D 85.393 178 26 0 1 178 29147314 29147137 3.980000e-43 185.0
24 TraesCS6D01G278400 chr2D 85.000 180 26 1 1 179 636727836 636727657 5.150000e-42 182.0
25 TraesCS6D01G278400 chr1A 91.228 171 15 0 1 171 556728125 556728295 1.400000e-57 233.0
26 TraesCS6D01G278400 chr5A 89.157 166 18 0 15 180 425495472 425495637 8.490000e-50 207.0
27 TraesCS6D01G278400 chr5A 97.674 43 1 0 2144 2186 635402593 635402551 8.990000e-10 75.0
28 TraesCS6D01G278400 chr3A 87.952 166 20 0 15 180 56770322 56770487 1.840000e-46 196.0
29 TraesCS6D01G278400 chr4B 86.111 180 23 2 1 179 382231406 382231584 2.380000e-45 193.0
30 TraesCS6D01G278400 chr3B 85.475 179 22 4 2 178 539091560 539091736 1.430000e-42 183.0
31 TraesCS6D01G278400 chr2A 97.727 44 1 0 2143 2186 759455622 759455579 2.500000e-10 76.8
32 TraesCS6D01G278400 chr7A 97.674 43 1 0 2144 2186 63444531 63444489 8.990000e-10 75.0
33 TraesCS6D01G278400 chr2B 89.474 57 4 1 2130 2186 398321542 398321488 1.160000e-08 71.3
34 TraesCS6D01G278400 chr2B 100.000 37 0 0 2150 2186 707612202 707612166 4.180000e-08 69.4
35 TraesCS6D01G278400 chr2B 97.368 38 1 0 2150 2187 528572983 528572946 5.410000e-07 65.8
36 TraesCS6D01G278400 chr3D 89.091 55 3 3 2135 2187 20348860 20348807 5.410000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G278400 chr6D 386517937 386520281 2344 True 597.036364 4331 96.950364 1 2345 11 chr6D.!!$R1 2344
1 TraesCS6D01G278400 chr6A 531716705 531718251 1546 True 894.500000 1537 89.730500 201 2153 2 chr6A.!!$R2 1952
2 TraesCS6D01G278400 chr6B 577460261 577461859 1598 True 415.600000 1256 90.292000 434 2345 5 chr6B.!!$R3 1911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.032678 ACCTGTCTGCACGTTGAGAG 59.967 55.0 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 1981 0.110056 CAATCGCATTGCTATCGGGC 60.11 55.0 7.12 0.0 32.92 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.415374 CGATCTGTCGGTTTCGTTGT 58.585 50.000 0.00 0.00 44.00 3.32
41 42 1.790623 CGATCTGTCGGTTTCGTTGTT 59.209 47.619 0.00 0.00 44.00 2.83
42 43 2.220133 CGATCTGTCGGTTTCGTTGTTT 59.780 45.455 0.00 0.00 44.00 2.83
43 44 3.302870 CGATCTGTCGGTTTCGTTGTTTT 60.303 43.478 0.00 0.00 44.00 2.43
44 45 3.661758 TCTGTCGGTTTCGTTGTTTTC 57.338 42.857 0.00 0.00 37.69 2.29
45 46 2.352342 TCTGTCGGTTTCGTTGTTTTCC 59.648 45.455 0.00 0.00 37.69 3.13
46 47 1.401199 TGTCGGTTTCGTTGTTTTCCC 59.599 47.619 0.00 0.00 37.69 3.97
47 48 0.656785 TCGGTTTCGTTGTTTTCCCG 59.343 50.000 0.00 0.00 37.69 5.14
48 49 0.656785 CGGTTTCGTTGTTTTCCCGA 59.343 50.000 0.00 0.00 36.12 5.14
49 50 1.333435 CGGTTTCGTTGTTTTCCCGAG 60.333 52.381 0.00 0.00 36.12 4.63
50 51 1.672363 GGTTTCGTTGTTTTCCCGAGT 59.328 47.619 0.00 0.00 31.54 4.18
51 52 2.871633 GGTTTCGTTGTTTTCCCGAGTA 59.128 45.455 0.00 0.00 31.54 2.59
52 53 3.312146 GGTTTCGTTGTTTTCCCGAGTAA 59.688 43.478 0.00 0.00 31.54 2.24
53 54 4.201901 GGTTTCGTTGTTTTCCCGAGTAAA 60.202 41.667 0.00 0.00 31.54 2.01
54 55 5.506151 GGTTTCGTTGTTTTCCCGAGTAAAT 60.506 40.000 0.00 0.00 31.54 1.40
55 56 4.735662 TCGTTGTTTTCCCGAGTAAATG 57.264 40.909 0.00 0.00 0.00 2.32
56 57 4.378774 TCGTTGTTTTCCCGAGTAAATGA 58.621 39.130 0.00 0.00 0.00 2.57
57 58 4.449743 TCGTTGTTTTCCCGAGTAAATGAG 59.550 41.667 0.00 0.00 0.00 2.90
58 59 4.449743 CGTTGTTTTCCCGAGTAAATGAGA 59.550 41.667 0.00 0.00 0.00 3.27
59 60 5.614013 CGTTGTTTTCCCGAGTAAATGAGAC 60.614 44.000 0.00 0.00 0.00 3.36
60 61 4.963373 TGTTTTCCCGAGTAAATGAGACA 58.037 39.130 0.00 0.00 0.00 3.41
61 62 5.369833 TGTTTTCCCGAGTAAATGAGACAA 58.630 37.500 0.00 0.00 0.00 3.18
62 63 6.001460 TGTTTTCCCGAGTAAATGAGACAAT 58.999 36.000 0.00 0.00 0.00 2.71
63 64 6.148811 TGTTTTCCCGAGTAAATGAGACAATC 59.851 38.462 0.00 0.00 0.00 2.67
64 65 5.414789 TTCCCGAGTAAATGAGACAATCA 57.585 39.130 0.00 0.00 43.70 2.57
65 66 5.011090 TCCCGAGTAAATGAGACAATCAG 57.989 43.478 0.00 0.00 42.53 2.90
66 67 4.466370 TCCCGAGTAAATGAGACAATCAGT 59.534 41.667 0.00 0.00 42.53 3.41
67 68 4.568359 CCCGAGTAAATGAGACAATCAGTG 59.432 45.833 0.00 0.00 42.53 3.66
68 69 4.033358 CCGAGTAAATGAGACAATCAGTGC 59.967 45.833 0.00 0.00 42.53 4.40
69 70 4.867047 CGAGTAAATGAGACAATCAGTGCT 59.133 41.667 0.00 0.00 42.53 4.40
70 71 5.005203 CGAGTAAATGAGACAATCAGTGCTC 59.995 44.000 0.00 0.00 42.53 4.26
71 72 5.181748 AGTAAATGAGACAATCAGTGCTCC 58.818 41.667 0.00 0.00 42.53 4.70
72 73 2.306341 ATGAGACAATCAGTGCTCCG 57.694 50.000 0.00 0.00 42.53 4.63
73 74 0.390340 TGAGACAATCAGTGCTCCGC 60.390 55.000 0.00 0.00 32.53 5.54
74 75 1.416813 GAGACAATCAGTGCTCCGCG 61.417 60.000 0.00 0.00 0.00 6.46
75 76 1.738099 GACAATCAGTGCTCCGCGT 60.738 57.895 4.92 0.00 0.00 6.01
76 77 1.291877 GACAATCAGTGCTCCGCGTT 61.292 55.000 4.92 0.00 0.00 4.84
77 78 0.037697 ACAATCAGTGCTCCGCGTTA 60.038 50.000 4.92 0.00 0.00 3.18
78 79 1.290203 CAATCAGTGCTCCGCGTTAT 58.710 50.000 4.92 0.00 0.00 1.89
79 80 2.159156 ACAATCAGTGCTCCGCGTTATA 60.159 45.455 4.92 0.00 0.00 0.98
80 81 2.423926 ATCAGTGCTCCGCGTTATAG 57.576 50.000 4.92 0.00 0.00 1.31
81 82 1.385528 TCAGTGCTCCGCGTTATAGA 58.614 50.000 4.92 0.00 0.00 1.98
82 83 1.954382 TCAGTGCTCCGCGTTATAGAT 59.046 47.619 4.92 0.00 0.00 1.98
83 84 2.361119 TCAGTGCTCCGCGTTATAGATT 59.639 45.455 4.92 0.00 0.00 2.40
84 85 3.566742 TCAGTGCTCCGCGTTATAGATTA 59.433 43.478 4.92 0.00 0.00 1.75
85 86 3.914966 CAGTGCTCCGCGTTATAGATTAG 59.085 47.826 4.92 0.00 0.00 1.73
86 87 2.662156 GTGCTCCGCGTTATAGATTAGC 59.338 50.000 4.92 0.33 0.00 3.09
87 88 2.260481 GCTCCGCGTTATAGATTAGCC 58.740 52.381 4.92 0.00 0.00 3.93
88 89 2.094649 GCTCCGCGTTATAGATTAGCCT 60.095 50.000 4.92 0.00 0.00 4.58
89 90 3.760537 CTCCGCGTTATAGATTAGCCTC 58.239 50.000 4.92 0.00 0.00 4.70
90 91 3.151554 TCCGCGTTATAGATTAGCCTCA 58.848 45.455 4.92 0.00 0.00 3.86
91 92 3.762288 TCCGCGTTATAGATTAGCCTCAT 59.238 43.478 4.92 0.00 0.00 2.90
92 93 4.219944 TCCGCGTTATAGATTAGCCTCATT 59.780 41.667 4.92 0.00 0.00 2.57
93 94 4.327357 CCGCGTTATAGATTAGCCTCATTG 59.673 45.833 4.92 0.00 0.00 2.82
94 95 4.923871 CGCGTTATAGATTAGCCTCATTGT 59.076 41.667 0.00 0.00 0.00 2.71
95 96 5.405571 CGCGTTATAGATTAGCCTCATTGTT 59.594 40.000 0.00 0.00 0.00 2.83
96 97 6.593978 GCGTTATAGATTAGCCTCATTGTTG 58.406 40.000 0.00 0.00 0.00 3.33
97 98 6.347725 GCGTTATAGATTAGCCTCATTGTTGG 60.348 42.308 0.00 0.00 0.00 3.77
98 99 6.706270 CGTTATAGATTAGCCTCATTGTTGGT 59.294 38.462 0.00 0.00 0.00 3.67
99 100 7.307396 CGTTATAGATTAGCCTCATTGTTGGTG 60.307 40.741 0.00 0.00 0.00 4.17
100 101 3.624777 AGATTAGCCTCATTGTTGGTGG 58.375 45.455 0.00 0.00 0.00 4.61
101 102 2.969821 TTAGCCTCATTGTTGGTGGT 57.030 45.000 0.00 0.00 0.00 4.16
102 103 2.969821 TAGCCTCATTGTTGGTGGTT 57.030 45.000 0.00 0.00 0.00 3.67
103 104 2.086610 AGCCTCATTGTTGGTGGTTT 57.913 45.000 0.00 0.00 0.00 3.27
104 105 2.397597 AGCCTCATTGTTGGTGGTTTT 58.602 42.857 0.00 0.00 0.00 2.43
105 106 2.771372 AGCCTCATTGTTGGTGGTTTTT 59.229 40.909 0.00 0.00 0.00 1.94
125 126 5.428496 TTTTGTGCTCTGTCTCAAATCTG 57.572 39.130 0.00 0.00 31.97 2.90
126 127 4.341366 TTGTGCTCTGTCTCAAATCTGA 57.659 40.909 0.00 0.00 0.00 3.27
127 128 4.548451 TGTGCTCTGTCTCAAATCTGAT 57.452 40.909 0.00 0.00 0.00 2.90
128 129 5.665916 TGTGCTCTGTCTCAAATCTGATA 57.334 39.130 0.00 0.00 0.00 2.15
129 130 5.414360 TGTGCTCTGTCTCAAATCTGATAC 58.586 41.667 0.00 0.00 31.06 2.24
130 131 4.808364 GTGCTCTGTCTCAAATCTGATACC 59.192 45.833 0.00 0.00 29.66 2.73
131 132 4.047822 GCTCTGTCTCAAATCTGATACCG 58.952 47.826 0.00 0.00 29.66 4.02
132 133 4.202060 GCTCTGTCTCAAATCTGATACCGA 60.202 45.833 0.00 0.00 29.66 4.69
133 134 5.508825 GCTCTGTCTCAAATCTGATACCGAT 60.509 44.000 0.00 0.00 29.66 4.18
134 135 6.078202 TCTGTCTCAAATCTGATACCGATC 57.922 41.667 0.00 0.00 29.66 3.69
135 136 5.830457 TCTGTCTCAAATCTGATACCGATCT 59.170 40.000 0.00 0.00 32.79 2.75
136 137 5.836347 TGTCTCAAATCTGATACCGATCTG 58.164 41.667 0.00 0.00 32.79 2.90
137 138 5.360999 TGTCTCAAATCTGATACCGATCTGT 59.639 40.000 0.00 0.00 33.79 3.41
138 139 6.127338 TGTCTCAAATCTGATACCGATCTGTT 60.127 38.462 0.00 0.00 33.79 3.16
139 140 7.068226 TGTCTCAAATCTGATACCGATCTGTTA 59.932 37.037 0.00 0.00 33.79 2.41
140 141 7.380065 GTCTCAAATCTGATACCGATCTGTTAC 59.620 40.741 0.00 0.00 33.79 2.50
141 142 6.513180 TCAAATCTGATACCGATCTGTTACC 58.487 40.000 0.00 0.00 33.79 2.85
142 143 6.097696 TCAAATCTGATACCGATCTGTTACCA 59.902 38.462 0.00 0.00 33.79 3.25
143 144 6.672266 AATCTGATACCGATCTGTTACCAT 57.328 37.500 0.00 0.00 33.79 3.55
144 145 7.776618 AATCTGATACCGATCTGTTACCATA 57.223 36.000 0.00 0.00 33.79 2.74
145 146 6.819397 TCTGATACCGATCTGTTACCATAG 57.181 41.667 0.00 0.00 33.79 2.23
146 147 5.183331 TCTGATACCGATCTGTTACCATAGC 59.817 44.000 0.00 0.00 33.79 2.97
147 148 4.219944 TGATACCGATCTGTTACCATAGCC 59.780 45.833 0.00 0.00 32.79 3.93
148 149 1.692519 ACCGATCTGTTACCATAGCCC 59.307 52.381 0.00 0.00 0.00 5.19
149 150 1.691976 CCGATCTGTTACCATAGCCCA 59.308 52.381 0.00 0.00 0.00 5.36
150 151 2.303022 CCGATCTGTTACCATAGCCCAT 59.697 50.000 0.00 0.00 0.00 4.00
151 152 3.513912 CCGATCTGTTACCATAGCCCATA 59.486 47.826 0.00 0.00 0.00 2.74
152 153 4.020573 CCGATCTGTTACCATAGCCCATAA 60.021 45.833 0.00 0.00 0.00 1.90
153 154 5.338381 CCGATCTGTTACCATAGCCCATAAT 60.338 44.000 0.00 0.00 0.00 1.28
154 155 5.582269 CGATCTGTTACCATAGCCCATAATG 59.418 44.000 0.00 0.00 0.00 1.90
155 156 5.904984 TCTGTTACCATAGCCCATAATGT 57.095 39.130 0.00 0.00 0.00 2.71
156 157 5.620206 TCTGTTACCATAGCCCATAATGTG 58.380 41.667 0.00 0.00 0.00 3.21
162 163 6.179967 ACCATAGCCCATAATGTGGTGGTT 62.180 45.833 3.72 0.00 46.19 3.67
163 164 7.593351 ACCATAGCCCATAATGTGGTGGTTT 62.593 44.000 3.72 0.00 46.19 3.27
164 165 8.974430 ACCATAGCCCATAATGTGGTGGTTTT 62.974 42.308 3.72 0.00 46.19 2.43
167 168 3.608316 CCATAATGTGGTGGTTTTGGG 57.392 47.619 0.00 0.00 43.44 4.12
168 169 2.903135 CCATAATGTGGTGGTTTTGGGT 59.097 45.455 0.00 0.00 43.44 4.51
169 170 4.090090 CCATAATGTGGTGGTTTTGGGTA 58.910 43.478 0.00 0.00 43.44 3.69
170 171 4.528596 CCATAATGTGGTGGTTTTGGGTAA 59.471 41.667 0.00 0.00 43.44 2.85
171 172 5.012148 CCATAATGTGGTGGTTTTGGGTAAA 59.988 40.000 0.00 0.00 43.44 2.01
172 173 6.296145 CCATAATGTGGTGGTTTTGGGTAAAT 60.296 38.462 0.00 0.00 43.44 1.40
173 174 7.093289 CCATAATGTGGTGGTTTTGGGTAAATA 60.093 37.037 0.00 0.00 43.44 1.40
174 175 6.749036 AATGTGGTGGTTTTGGGTAAATAA 57.251 33.333 0.00 0.00 0.00 1.40
175 176 5.532664 TGTGGTGGTTTTGGGTAAATAAC 57.467 39.130 0.00 0.00 0.00 1.89
176 177 5.209659 TGTGGTGGTTTTGGGTAAATAACT 58.790 37.500 0.00 0.00 0.00 2.24
177 178 5.302313 TGTGGTGGTTTTGGGTAAATAACTC 59.698 40.000 0.00 0.00 0.00 3.01
178 179 5.537295 GTGGTGGTTTTGGGTAAATAACTCT 59.463 40.000 0.00 0.00 0.00 3.24
179 180 5.771165 TGGTGGTTTTGGGTAAATAACTCTC 59.229 40.000 0.00 0.00 0.00 3.20
180 181 6.008331 GGTGGTTTTGGGTAAATAACTCTCT 58.992 40.000 0.00 0.00 0.00 3.10
181 182 7.170277 GGTGGTTTTGGGTAAATAACTCTCTA 58.830 38.462 0.00 0.00 0.00 2.43
182 183 7.832685 GGTGGTTTTGGGTAAATAACTCTCTAT 59.167 37.037 0.00 0.00 0.00 1.98
183 184 8.674607 GTGGTTTTGGGTAAATAACTCTCTATG 58.325 37.037 0.00 0.00 0.00 2.23
184 185 7.338449 TGGTTTTGGGTAAATAACTCTCTATGC 59.662 37.037 0.00 0.00 0.00 3.14
185 186 7.338449 GGTTTTGGGTAAATAACTCTCTATGCA 59.662 37.037 0.00 0.00 0.00 3.96
186 187 8.398665 GTTTTGGGTAAATAACTCTCTATGCAG 58.601 37.037 0.00 0.00 0.00 4.41
187 188 5.611374 TGGGTAAATAACTCTCTATGCAGC 58.389 41.667 0.00 0.00 0.00 5.25
188 189 4.998033 GGGTAAATAACTCTCTATGCAGCC 59.002 45.833 0.00 0.00 0.00 4.85
189 190 5.454755 GGGTAAATAACTCTCTATGCAGCCA 60.455 44.000 0.00 0.00 0.00 4.75
190 191 5.467063 GGTAAATAACTCTCTATGCAGCCAC 59.533 44.000 0.00 0.00 0.00 5.01
191 192 3.760580 ATAACTCTCTATGCAGCCACC 57.239 47.619 0.00 0.00 0.00 4.61
192 193 1.279496 AACTCTCTATGCAGCCACCA 58.721 50.000 0.00 0.00 0.00 4.17
193 194 0.539051 ACTCTCTATGCAGCCACCAC 59.461 55.000 0.00 0.00 0.00 4.16
194 195 0.179062 CTCTCTATGCAGCCACCACC 60.179 60.000 0.00 0.00 0.00 4.61
195 196 0.909133 TCTCTATGCAGCCACCACCA 60.909 55.000 0.00 0.00 0.00 4.17
196 197 0.745845 CTCTATGCAGCCACCACCAC 60.746 60.000 0.00 0.00 0.00 4.16
197 198 1.200760 TCTATGCAGCCACCACCACT 61.201 55.000 0.00 0.00 0.00 4.00
198 199 1.002257 TATGCAGCCACCACCACTG 60.002 57.895 0.00 0.00 34.48 3.66
199 200 2.482796 TATGCAGCCACCACCACTGG 62.483 60.000 0.00 0.00 44.26 4.00
227 228 2.510768 AACCATCTCGGAGCGTAATC 57.489 50.000 0.00 0.00 38.63 1.75
270 271 0.032678 ACCTGTCTGCACGTTGAGAG 59.967 55.000 0.00 0.00 0.00 3.20
271 272 1.287730 CCTGTCTGCACGTTGAGAGC 61.288 60.000 0.00 0.00 36.95 4.09
273 274 2.029844 GTCTGCACGTTGAGAGCCC 61.030 63.158 0.00 0.00 35.49 5.19
321 326 2.032528 ACGTCGTGTCTCCCCGTA 59.967 61.111 0.00 0.00 0.00 4.02
327 332 0.390603 CGTGTCTCCCCGTAAATGCA 60.391 55.000 0.00 0.00 0.00 3.96
360 365 3.432782 GACCAATCGTACGAGTTACCAG 58.567 50.000 23.89 8.47 0.00 4.00
493 498 5.464069 TGTAGGTTCTGCTTGGATATAGGA 58.536 41.667 0.00 0.00 0.00 2.94
558 566 1.039233 CACATAGGGGGTACGGACGT 61.039 60.000 1.98 1.98 0.00 4.34
619 656 1.504900 CTGTACGCGGCAGTGTCTA 59.495 57.895 20.11 0.00 41.88 2.59
707 748 0.036306 CCTCCTTTGCCGGTGTAACT 59.964 55.000 1.90 0.00 36.74 2.24
780 832 2.243774 TAGTGGGGGAGCTCAGAGGG 62.244 65.000 17.19 0.00 0.00 4.30
798 850 2.028484 GTTGACCACGCGTCCTCA 59.972 61.111 9.86 10.34 41.18 3.86
921 974 1.344763 CCTCCACCGACTTGACTTCTT 59.655 52.381 0.00 0.00 0.00 2.52
922 975 2.610727 CCTCCACCGACTTGACTTCTTC 60.611 54.545 0.00 0.00 0.00 2.87
923 976 2.297597 CTCCACCGACTTGACTTCTTCT 59.702 50.000 0.00 0.00 0.00 2.85
924 977 2.296471 TCCACCGACTTGACTTCTTCTC 59.704 50.000 0.00 0.00 0.00 2.87
925 978 2.610727 CCACCGACTTGACTTCTTCTCC 60.611 54.545 0.00 0.00 0.00 3.71
926 979 2.297597 CACCGACTTGACTTCTTCTCCT 59.702 50.000 0.00 0.00 0.00 3.69
953 1006 2.365617 TCCTCCTCTCACAAGTCACAAC 59.634 50.000 0.00 0.00 0.00 3.32
954 1007 2.366916 CCTCCTCTCACAAGTCACAACT 59.633 50.000 0.00 0.00 37.32 3.16
955 1008 3.553922 CCTCCTCTCACAAGTCACAACTC 60.554 52.174 0.00 0.00 33.48 3.01
956 1009 3.031013 TCCTCTCACAAGTCACAACTCA 58.969 45.455 0.00 0.00 33.48 3.41
957 1010 3.126831 CCTCTCACAAGTCACAACTCAC 58.873 50.000 0.00 0.00 33.48 3.51
958 1011 3.430790 CCTCTCACAAGTCACAACTCACA 60.431 47.826 0.00 0.00 33.48 3.58
959 1012 4.183865 CTCTCACAAGTCACAACTCACAA 58.816 43.478 0.00 0.00 33.48 3.33
960 1013 3.932710 TCTCACAAGTCACAACTCACAAC 59.067 43.478 0.00 0.00 33.48 3.32
961 1014 3.006940 TCACAAGTCACAACTCACAACC 58.993 45.455 0.00 0.00 33.48 3.77
962 1015 2.097466 CACAAGTCACAACTCACAACCC 59.903 50.000 0.00 0.00 33.48 4.11
977 1030 2.567169 ACAACCCGTCAATCTCATCTCA 59.433 45.455 0.00 0.00 0.00 3.27
989 1042 0.813821 TCATCTCACTGACTCGCCTG 59.186 55.000 0.00 0.00 0.00 4.85
990 1043 0.529833 CATCTCACTGACTCGCCTGT 59.470 55.000 0.00 0.00 0.00 4.00
993 1046 1.527433 CTCACTGACTCGCCTGTCCA 61.527 60.000 1.95 0.00 36.21 4.02
994 1047 1.112916 TCACTGACTCGCCTGTCCAA 61.113 55.000 1.95 0.00 36.21 3.53
995 1048 0.036952 CACTGACTCGCCTGTCCAAT 60.037 55.000 1.95 0.00 36.21 3.16
996 1049 0.247736 ACTGACTCGCCTGTCCAATC 59.752 55.000 1.95 0.00 36.21 2.67
997 1050 0.534412 CTGACTCGCCTGTCCAATCT 59.466 55.000 1.95 0.00 36.21 2.40
1378 1446 3.429043 CGGTGTACGTATGGCAAGT 57.571 52.632 0.00 0.00 37.93 3.16
1379 1447 2.565210 CGGTGTACGTATGGCAAGTA 57.435 50.000 0.00 0.00 37.93 2.24
1403 1471 0.673333 TCGTCGGCGTAAGTCTGGTA 60.673 55.000 10.18 0.00 42.28 3.25
1489 1576 8.857098 AGCGAACATAGTAGGATTTGATTACTA 58.143 33.333 0.00 0.00 35.17 1.82
1520 1607 4.879545 TGTAAGAAAGGTTCGCTCACTTTT 59.120 37.500 0.00 0.00 34.82 2.27
1541 1628 7.451566 ACTTTTATCCTGCACTTTTCCTGTTAT 59.548 33.333 0.00 0.00 0.00 1.89
1542 1629 7.775053 TTTATCCTGCACTTTTCCTGTTATT 57.225 32.000 0.00 0.00 0.00 1.40
1543 1630 8.871629 TTTATCCTGCACTTTTCCTGTTATTA 57.128 30.769 0.00 0.00 0.00 0.98
1603 1690 0.458370 GCCTGCGGTGCCTATTTTTG 60.458 55.000 0.00 0.00 0.00 2.44
1618 1705 4.996062 ATTTTTGCTTCCGATTTTGCTG 57.004 36.364 0.00 0.00 0.00 4.41
1622 1709 2.435422 TGCTTCCGATTTTGCTGATCA 58.565 42.857 0.00 0.00 0.00 2.92
1699 1793 7.524294 TTTTCAGACAAATTTCTGTTTCTGC 57.476 32.000 6.96 0.00 43.19 4.26
1700 1794 5.833406 TCAGACAAATTTCTGTTTCTGCA 57.167 34.783 6.96 0.00 43.19 4.41
1701 1795 5.581605 TCAGACAAATTTCTGTTTCTGCAC 58.418 37.500 6.96 0.00 43.19 4.57
1702 1796 4.438797 CAGACAAATTTCTGTTTCTGCACG 59.561 41.667 0.00 0.00 38.61 5.34
1703 1797 4.335315 AGACAAATTTCTGTTTCTGCACGA 59.665 37.500 0.00 0.00 0.00 4.35
1704 1798 5.009010 AGACAAATTTCTGTTTCTGCACGAT 59.991 36.000 0.00 0.00 0.00 3.73
1705 1799 5.591099 ACAAATTTCTGTTTCTGCACGATT 58.409 33.333 0.00 0.00 0.00 3.34
1706 1800 6.042143 ACAAATTTCTGTTTCTGCACGATTT 58.958 32.000 0.00 0.00 0.00 2.17
1707 1801 6.019640 ACAAATTTCTGTTTCTGCACGATTTG 60.020 34.615 0.00 0.00 37.74 2.32
1715 1809 4.481112 GCACGATTTGCCTGCCCG 62.481 66.667 0.00 0.00 46.63 6.13
1716 1810 2.745884 CACGATTTGCCTGCCCGA 60.746 61.111 0.00 0.00 0.00 5.14
1717 1811 2.114670 CACGATTTGCCTGCCCGAT 61.115 57.895 0.00 0.00 0.00 4.18
1718 1812 0.813610 CACGATTTGCCTGCCCGATA 60.814 55.000 0.00 0.00 0.00 2.92
1719 1813 0.532862 ACGATTTGCCTGCCCGATAG 60.533 55.000 0.00 0.00 0.00 2.08
1720 1814 0.532862 CGATTTGCCTGCCCGATAGT 60.533 55.000 0.00 0.00 0.00 2.12
1721 1815 1.270094 CGATTTGCCTGCCCGATAGTA 60.270 52.381 0.00 0.00 0.00 1.82
1722 1816 2.805295 CGATTTGCCTGCCCGATAGTAA 60.805 50.000 0.00 0.00 0.00 2.24
1723 1817 3.412386 GATTTGCCTGCCCGATAGTAAT 58.588 45.455 0.00 0.00 0.00 1.89
1724 1818 2.254546 TTGCCTGCCCGATAGTAATG 57.745 50.000 0.00 0.00 0.00 1.90
1725 1819 0.250295 TGCCTGCCCGATAGTAATGC 60.250 55.000 0.00 0.00 0.00 3.56
1726 1820 1.291877 GCCTGCCCGATAGTAATGCG 61.292 60.000 0.00 0.00 0.00 4.73
1727 1821 0.317160 CCTGCCCGATAGTAATGCGA 59.683 55.000 0.00 0.00 0.00 5.10
1728 1822 1.419374 CTGCCCGATAGTAATGCGAC 58.581 55.000 0.00 0.00 0.00 5.19
1729 1823 1.000163 CTGCCCGATAGTAATGCGACT 60.000 52.381 0.00 0.00 0.00 4.18
1730 1824 1.269569 TGCCCGATAGTAATGCGACTG 60.270 52.381 0.00 0.00 0.00 3.51
1731 1825 1.000607 GCCCGATAGTAATGCGACTGA 60.001 52.381 0.00 0.00 0.00 3.41
1732 1826 2.545113 GCCCGATAGTAATGCGACTGAA 60.545 50.000 0.00 0.00 0.00 3.02
1733 1827 3.713288 CCCGATAGTAATGCGACTGAAA 58.287 45.455 0.00 0.00 0.00 2.69
1734 1828 4.307432 CCCGATAGTAATGCGACTGAAAT 58.693 43.478 0.00 0.00 0.00 2.17
1735 1829 4.750098 CCCGATAGTAATGCGACTGAAATT 59.250 41.667 0.00 0.00 0.00 1.82
1736 1830 5.236478 CCCGATAGTAATGCGACTGAAATTT 59.764 40.000 0.00 0.00 0.00 1.82
1737 1831 6.422701 CCCGATAGTAATGCGACTGAAATTTA 59.577 38.462 0.00 0.00 0.00 1.40
1738 1832 7.042321 CCCGATAGTAATGCGACTGAAATTTAA 60.042 37.037 0.00 0.00 0.00 1.52
1739 1833 8.495949 CCGATAGTAATGCGACTGAAATTTAAT 58.504 33.333 0.00 0.00 0.00 1.40
1786 1880 4.611943 GGCCTCTTTTGTTTCTGTTTCTC 58.388 43.478 0.00 0.00 0.00 2.87
1787 1881 4.499865 GGCCTCTTTTGTTTCTGTTTCTCC 60.500 45.833 0.00 0.00 0.00 3.71
1788 1882 4.097892 GCCTCTTTTGTTTCTGTTTCTCCA 59.902 41.667 0.00 0.00 0.00 3.86
1789 1883 5.582550 CCTCTTTTGTTTCTGTTTCTCCAC 58.417 41.667 0.00 0.00 0.00 4.02
1790 1884 5.229921 TCTTTTGTTTCTGTTTCTCCACG 57.770 39.130 0.00 0.00 0.00 4.94
1791 1885 4.938832 TCTTTTGTTTCTGTTTCTCCACGA 59.061 37.500 0.00 0.00 0.00 4.35
1792 1886 4.875544 TTTGTTTCTGTTTCTCCACGAG 57.124 40.909 0.00 0.00 0.00 4.18
1793 1887 3.536956 TGTTTCTGTTTCTCCACGAGT 57.463 42.857 0.00 0.00 0.00 4.18
1794 1888 3.869065 TGTTTCTGTTTCTCCACGAGTT 58.131 40.909 0.00 0.00 0.00 3.01
1795 1889 3.621268 TGTTTCTGTTTCTCCACGAGTTG 59.379 43.478 0.00 0.00 0.00 3.16
1796 1890 1.865865 TCTGTTTCTCCACGAGTTGC 58.134 50.000 0.00 0.00 0.00 4.17
1797 1891 0.868406 CTGTTTCTCCACGAGTTGCC 59.132 55.000 0.00 0.00 0.00 4.52
1798 1892 0.468226 TGTTTCTCCACGAGTTGCCT 59.532 50.000 0.00 0.00 0.00 4.75
1799 1893 0.868406 GTTTCTCCACGAGTTGCCTG 59.132 55.000 0.00 0.00 0.00 4.85
1800 1894 0.884704 TTTCTCCACGAGTTGCCTGC 60.885 55.000 0.00 0.00 0.00 4.85
1801 1895 2.731691 TTCTCCACGAGTTGCCTGCC 62.732 60.000 0.00 0.00 0.00 4.85
1802 1896 4.329545 TCCACGAGTTGCCTGCCC 62.330 66.667 0.00 0.00 0.00 5.36
1804 1898 4.680237 CACGAGTTGCCTGCCCGA 62.680 66.667 0.00 0.00 0.00 5.14
1805 1899 3.706373 ACGAGTTGCCTGCCCGAT 61.706 61.111 0.00 0.00 0.00 4.18
1806 1900 2.355986 ACGAGTTGCCTGCCCGATA 61.356 57.895 0.00 0.00 0.00 2.92
1807 1901 1.592669 CGAGTTGCCTGCCCGATAG 60.593 63.158 0.00 0.00 0.00 2.08
1808 1902 1.522569 GAGTTGCCTGCCCGATAGT 59.477 57.895 0.00 0.00 0.00 2.12
1809 1903 0.750850 GAGTTGCCTGCCCGATAGTA 59.249 55.000 0.00 0.00 0.00 1.82
1810 1904 1.138266 GAGTTGCCTGCCCGATAGTAA 59.862 52.381 0.00 0.00 0.00 2.24
1811 1905 1.768870 AGTTGCCTGCCCGATAGTAAT 59.231 47.619 0.00 0.00 0.00 1.89
1812 1906 1.873591 GTTGCCTGCCCGATAGTAATG 59.126 52.381 0.00 0.00 0.00 1.90
1813 1907 0.250295 TGCCTGCCCGATAGTAATGC 60.250 55.000 0.00 0.00 0.00 3.56
1814 1908 1.291877 GCCTGCCCGATAGTAATGCG 61.292 60.000 0.00 0.00 0.00 4.73
1815 1909 0.317160 CCTGCCCGATAGTAATGCGA 59.683 55.000 0.00 0.00 0.00 5.10
1816 1910 1.419374 CTGCCCGATAGTAATGCGAC 58.581 55.000 0.00 0.00 0.00 5.19
1817 1911 1.000163 CTGCCCGATAGTAATGCGACT 60.000 52.381 0.00 0.00 0.00 4.18
1818 1912 1.269569 TGCCCGATAGTAATGCGACTG 60.270 52.381 0.00 0.00 0.00 3.51
1819 1913 1.000607 GCCCGATAGTAATGCGACTGA 60.001 52.381 0.00 0.00 0.00 3.41
1820 1914 2.545113 GCCCGATAGTAATGCGACTGAA 60.545 50.000 0.00 0.00 0.00 3.02
1821 1915 3.713288 CCCGATAGTAATGCGACTGAAA 58.287 45.455 0.00 0.00 0.00 2.69
1822 1916 4.307432 CCCGATAGTAATGCGACTGAAAT 58.693 43.478 0.00 0.00 0.00 2.17
1823 1917 4.750098 CCCGATAGTAATGCGACTGAAATT 59.250 41.667 0.00 0.00 0.00 1.82
1824 1918 5.236478 CCCGATAGTAATGCGACTGAAATTT 59.764 40.000 0.00 0.00 0.00 1.82
1825 1919 6.422701 CCCGATAGTAATGCGACTGAAATTTA 59.577 38.462 0.00 0.00 0.00 1.40
1826 1920 7.042321 CCCGATAGTAATGCGACTGAAATTTAA 60.042 37.037 0.00 0.00 0.00 1.52
1827 1921 8.495949 CCGATAGTAATGCGACTGAAATTTAAT 58.504 33.333 0.00 0.00 0.00 1.40
1853 1947 7.816945 AAATTTTCAGACAAATCAATAGCGG 57.183 32.000 0.00 0.00 0.00 5.52
1854 1948 4.355543 TTTCAGACAAATCAATAGCGGC 57.644 40.909 0.00 0.00 0.00 6.53
1855 1949 2.288666 TCAGACAAATCAATAGCGGCC 58.711 47.619 0.00 0.00 0.00 6.13
1856 1950 2.092968 TCAGACAAATCAATAGCGGCCT 60.093 45.455 0.00 0.00 0.00 5.19
1857 1951 2.289002 CAGACAAATCAATAGCGGCCTC 59.711 50.000 0.00 0.00 0.00 4.70
1858 1952 2.171448 AGACAAATCAATAGCGGCCTCT 59.829 45.455 0.00 0.00 0.00 3.69
1859 1953 2.945668 GACAAATCAATAGCGGCCTCTT 59.054 45.455 0.00 0.00 0.00 2.85
1860 1954 3.356290 ACAAATCAATAGCGGCCTCTTT 58.644 40.909 0.00 0.00 0.00 2.52
1861 1955 3.763897 ACAAATCAATAGCGGCCTCTTTT 59.236 39.130 0.00 0.00 0.00 2.27
1862 1956 4.107622 CAAATCAATAGCGGCCTCTTTTG 58.892 43.478 17.01 17.01 0.00 2.44
1863 1957 2.489938 TCAATAGCGGCCTCTTTTGT 57.510 45.000 20.75 0.00 0.00 2.83
1864 1958 2.790433 TCAATAGCGGCCTCTTTTGTT 58.210 42.857 20.75 2.16 0.00 2.83
1865 1959 3.153919 TCAATAGCGGCCTCTTTTGTTT 58.846 40.909 20.75 0.00 0.00 2.83
1866 1960 3.190535 TCAATAGCGGCCTCTTTTGTTTC 59.809 43.478 20.75 0.00 0.00 2.78
1867 1961 2.561478 TAGCGGCCTCTTTTGTTTCT 57.439 45.000 0.00 0.00 0.00 2.52
1868 1962 0.954452 AGCGGCCTCTTTTGTTTCTG 59.046 50.000 0.00 0.00 0.00 3.02
1869 1963 0.668535 GCGGCCTCTTTTGTTTCTGT 59.331 50.000 0.00 0.00 0.00 3.41
1870 1964 1.067060 GCGGCCTCTTTTGTTTCTGTT 59.933 47.619 0.00 0.00 0.00 3.16
1871 1965 2.481276 GCGGCCTCTTTTGTTTCTGTTT 60.481 45.455 0.00 0.00 0.00 2.83
1872 1966 3.372060 CGGCCTCTTTTGTTTCTGTTTC 58.628 45.455 0.00 0.00 0.00 2.78
1873 1967 3.066760 CGGCCTCTTTTGTTTCTGTTTCT 59.933 43.478 0.00 0.00 0.00 2.52
1874 1968 4.611943 GGCCTCTTTTGTTTCTGTTTCTC 58.388 43.478 0.00 0.00 0.00 2.87
1875 1969 4.499865 GGCCTCTTTTGTTTCTGTTTCTCC 60.500 45.833 0.00 0.00 0.00 3.71
1876 1970 4.097892 GCCTCTTTTGTTTCTGTTTCTCCA 59.902 41.667 0.00 0.00 0.00 3.86
1877 1971 5.582550 CCTCTTTTGTTTCTGTTTCTCCAC 58.417 41.667 0.00 0.00 0.00 4.02
1878 1972 5.229921 TCTTTTGTTTCTGTTTCTCCACG 57.770 39.130 0.00 0.00 0.00 4.94
1879 1973 4.938832 TCTTTTGTTTCTGTTTCTCCACGA 59.061 37.500 0.00 0.00 0.00 4.35
1880 1974 4.875544 TTTGTTTCTGTTTCTCCACGAG 57.124 40.909 0.00 0.00 0.00 4.18
1881 1975 3.536956 TGTTTCTGTTTCTCCACGAGT 57.463 42.857 0.00 0.00 0.00 4.18
1882 1976 3.869065 TGTTTCTGTTTCTCCACGAGTT 58.131 40.909 0.00 0.00 0.00 3.01
1883 1977 3.621268 TGTTTCTGTTTCTCCACGAGTTG 59.379 43.478 0.00 0.00 0.00 3.16
1884 1978 1.865865 TCTGTTTCTCCACGAGTTGC 58.134 50.000 0.00 0.00 0.00 4.17
1885 1979 0.868406 CTGTTTCTCCACGAGTTGCC 59.132 55.000 0.00 0.00 0.00 4.52
1886 1980 0.468226 TGTTTCTCCACGAGTTGCCT 59.532 50.000 0.00 0.00 0.00 4.75
1887 1981 0.868406 GTTTCTCCACGAGTTGCCTG 59.132 55.000 0.00 0.00 0.00 4.85
1888 1982 0.884704 TTTCTCCACGAGTTGCCTGC 60.885 55.000 0.00 0.00 0.00 4.85
1889 1983 2.731691 TTCTCCACGAGTTGCCTGCC 62.732 60.000 0.00 0.00 0.00 4.85
1890 1984 4.329545 TCCACGAGTTGCCTGCCC 62.330 66.667 0.00 0.00 0.00 5.36
1892 1986 4.680237 CACGAGTTGCCTGCCCGA 62.680 66.667 0.00 0.00 0.00 5.14
1893 1987 3.706373 ACGAGTTGCCTGCCCGAT 61.706 61.111 0.00 0.00 0.00 4.18
1894 1988 2.355986 ACGAGTTGCCTGCCCGATA 61.356 57.895 0.00 0.00 0.00 2.92
1895 1989 1.592669 CGAGTTGCCTGCCCGATAG 60.593 63.158 0.00 0.00 0.00 2.08
1896 1990 1.889573 GAGTTGCCTGCCCGATAGC 60.890 63.158 0.00 0.00 0.00 2.97
1897 1991 2.124736 GTTGCCTGCCCGATAGCA 60.125 61.111 0.00 0.00 41.46 3.49
1898 1992 1.748879 GTTGCCTGCCCGATAGCAA 60.749 57.895 0.00 0.00 43.52 3.91
1899 1993 1.103398 GTTGCCTGCCCGATAGCAAT 61.103 55.000 0.00 0.00 46.00 3.56
1900 1994 1.102809 TTGCCTGCCCGATAGCAATG 61.103 55.000 0.00 0.00 43.52 2.82
1901 1995 2.912624 GCCTGCCCGATAGCAATGC 61.913 63.158 0.00 0.00 43.52 3.56
1902 1996 2.610694 CCTGCCCGATAGCAATGCG 61.611 63.158 0.00 0.00 43.52 4.73
1903 1997 1.595109 CTGCCCGATAGCAATGCGA 60.595 57.895 0.00 0.00 43.52 5.10
1904 1998 0.952497 CTGCCCGATAGCAATGCGAT 60.952 55.000 0.00 0.00 43.52 4.58
1905 1999 0.534877 TGCCCGATAGCAATGCGATT 60.535 50.000 1.76 0.00 40.56 3.34
1906 2000 0.110056 GCCCGATAGCAATGCGATTG 60.110 55.000 8.38 8.38 43.06 2.67
1907 2001 1.511850 CCCGATAGCAATGCGATTGA 58.488 50.000 15.72 0.00 42.83 2.57
1908 2002 1.872952 CCCGATAGCAATGCGATTGAA 59.127 47.619 15.72 0.00 42.83 2.69
1909 2003 2.290367 CCCGATAGCAATGCGATTGAAA 59.710 45.455 15.72 1.44 42.83 2.69
1910 2004 3.058016 CCCGATAGCAATGCGATTGAAAT 60.058 43.478 15.72 5.18 42.83 2.17
1911 2005 4.539870 CCGATAGCAATGCGATTGAAATT 58.460 39.130 15.72 0.00 42.83 1.82
1912 2006 4.977963 CCGATAGCAATGCGATTGAAATTT 59.022 37.500 15.72 0.00 42.83 1.82
1913 2007 6.142139 CCGATAGCAATGCGATTGAAATTTA 58.858 36.000 15.72 0.00 42.83 1.40
1914 2008 6.636447 CCGATAGCAATGCGATTGAAATTTAA 59.364 34.615 15.72 0.00 42.83 1.52
1915 2009 7.326789 CCGATAGCAATGCGATTGAAATTTAAT 59.673 33.333 15.72 0.00 42.83 1.40
1916 2010 9.328721 CGATAGCAATGCGATTGAAATTTAATA 57.671 29.630 9.58 0.00 42.83 0.98
1941 2035 7.816945 AAATTTTCAGACAAATCAATAGCGG 57.183 32.000 0.00 0.00 0.00 5.52
1942 2036 4.355543 TTTCAGACAAATCAATAGCGGC 57.644 40.909 0.00 0.00 0.00 6.53
1943 2037 2.288666 TCAGACAAATCAATAGCGGCC 58.711 47.619 0.00 0.00 0.00 6.13
1944 2038 2.092968 TCAGACAAATCAATAGCGGCCT 60.093 45.455 0.00 0.00 0.00 5.19
1945 2039 2.289002 CAGACAAATCAATAGCGGCCTC 59.711 50.000 0.00 0.00 0.00 4.70
1946 2040 2.171448 AGACAAATCAATAGCGGCCTCT 59.829 45.455 0.00 0.00 0.00 3.69
1947 2041 2.945668 GACAAATCAATAGCGGCCTCTT 59.054 45.455 0.00 0.00 0.00 2.85
1948 2042 3.356290 ACAAATCAATAGCGGCCTCTTT 58.644 40.909 0.00 0.00 0.00 2.52
1949 2043 3.763897 ACAAATCAATAGCGGCCTCTTTT 59.236 39.130 0.00 0.00 0.00 2.27
1950 2044 4.107622 CAAATCAATAGCGGCCTCTTTTG 58.892 43.478 17.01 17.01 0.00 2.44
1951 2045 2.489938 TCAATAGCGGCCTCTTTTGT 57.510 45.000 20.75 0.00 0.00 2.83
1952 2046 2.790433 TCAATAGCGGCCTCTTTTGTT 58.210 42.857 20.75 2.16 0.00 2.83
1953 2047 3.153919 TCAATAGCGGCCTCTTTTGTTT 58.846 40.909 20.75 0.00 0.00 2.83
1954 2048 3.190535 TCAATAGCGGCCTCTTTTGTTTC 59.809 43.478 20.75 0.00 0.00 2.78
1955 2049 2.561478 TAGCGGCCTCTTTTGTTTCT 57.439 45.000 0.00 0.00 0.00 2.52
1956 2050 1.692411 AGCGGCCTCTTTTGTTTCTT 58.308 45.000 0.00 0.00 0.00 2.52
1957 2051 2.031870 AGCGGCCTCTTTTGTTTCTTT 58.968 42.857 0.00 0.00 0.00 2.52
1958 2052 2.430694 AGCGGCCTCTTTTGTTTCTTTT 59.569 40.909 0.00 0.00 0.00 2.27
1959 2053 3.118775 AGCGGCCTCTTTTGTTTCTTTTT 60.119 39.130 0.00 0.00 0.00 1.94
1960 2054 3.245284 GCGGCCTCTTTTGTTTCTTTTTC 59.755 43.478 0.00 0.00 0.00 2.29
1961 2055 4.682787 CGGCCTCTTTTGTTTCTTTTTCT 58.317 39.130 0.00 0.00 0.00 2.52
1962 2056 4.504097 CGGCCTCTTTTGTTTCTTTTTCTG 59.496 41.667 0.00 0.00 0.00 3.02
1963 2057 4.271049 GGCCTCTTTTGTTTCTTTTTCTGC 59.729 41.667 0.00 0.00 0.00 4.26
1964 2058 4.869861 GCCTCTTTTGTTTCTTTTTCTGCA 59.130 37.500 0.00 0.00 0.00 4.41
1965 2059 5.220472 GCCTCTTTTGTTTCTTTTTCTGCAC 60.220 40.000 0.00 0.00 0.00 4.57
1966 2060 5.004726 CCTCTTTTGTTTCTTTTTCTGCACG 59.995 40.000 0.00 0.00 0.00 5.34
1967 2061 5.704888 TCTTTTGTTTCTTTTTCTGCACGA 58.295 33.333 0.00 0.00 0.00 4.35
1968 2062 5.799936 TCTTTTGTTTCTTTTTCTGCACGAG 59.200 36.000 0.00 0.00 0.00 4.18
1969 2063 4.695217 TTGTTTCTTTTTCTGCACGAGT 57.305 36.364 0.00 0.00 0.00 4.18
1970 2064 4.695217 TGTTTCTTTTTCTGCACGAGTT 57.305 36.364 0.00 0.00 0.00 3.01
1971 2065 4.411327 TGTTTCTTTTTCTGCACGAGTTG 58.589 39.130 0.00 0.00 0.00 3.16
1980 2074 2.664851 CACGAGTTGCTTGCCCGA 60.665 61.111 0.00 0.00 0.00 5.14
1981 2075 2.034879 CACGAGTTGCTTGCCCGAT 61.035 57.895 0.00 0.00 0.00 4.18
1982 2076 0.739462 CACGAGTTGCTTGCCCGATA 60.739 55.000 0.00 0.00 0.00 2.92
1983 2077 0.460284 ACGAGTTGCTTGCCCGATAG 60.460 55.000 0.00 0.00 0.00 2.08
1984 2078 1.766143 CGAGTTGCTTGCCCGATAGC 61.766 60.000 0.00 0.00 37.89 2.97
1985 2079 0.744414 GAGTTGCTTGCCCGATAGCA 60.744 55.000 0.00 0.00 45.06 3.49
1991 2085 2.503546 TGCCCGATAGCAATGCGA 59.496 55.556 0.00 0.00 40.56 5.10
1992 2086 1.887242 TGCCCGATAGCAATGCGAC 60.887 57.895 0.00 0.00 40.56 5.19
1993 2087 1.595382 GCCCGATAGCAATGCGACT 60.595 57.895 0.00 0.00 0.00 4.18
1994 2088 1.835483 GCCCGATAGCAATGCGACTG 61.835 60.000 0.00 0.00 0.00 3.51
1995 2089 0.249447 CCCGATAGCAATGCGACTGA 60.249 55.000 0.00 0.00 0.00 3.41
1996 2090 1.570813 CCGATAGCAATGCGACTGAA 58.429 50.000 0.00 0.00 0.00 3.02
1997 2091 1.933181 CCGATAGCAATGCGACTGAAA 59.067 47.619 0.00 0.00 0.00 2.69
1998 2092 2.545526 CCGATAGCAATGCGACTGAAAT 59.454 45.455 0.00 0.00 0.00 2.17
1999 2093 3.002656 CCGATAGCAATGCGACTGAAATT 59.997 43.478 0.00 0.00 0.00 1.82
2000 2094 4.496341 CCGATAGCAATGCGACTGAAATTT 60.496 41.667 0.00 0.00 0.00 1.82
2001 2095 5.277297 CCGATAGCAATGCGACTGAAATTTA 60.277 40.000 0.00 0.00 0.00 1.40
2002 2096 6.191661 CGATAGCAATGCGACTGAAATTTAA 58.808 36.000 0.00 0.00 0.00 1.52
2003 2097 6.852853 CGATAGCAATGCGACTGAAATTTAAT 59.147 34.615 0.00 0.00 0.00 1.40
2004 2098 8.009409 CGATAGCAATGCGACTGAAATTTAATA 58.991 33.333 0.00 0.00 0.00 0.98
2005 2099 9.663904 GATAGCAATGCGACTGAAATTTAATAA 57.336 29.630 0.00 0.00 0.00 1.40
2007 2101 8.931385 AGCAATGCGACTGAAATTTAATAAAT 57.069 26.923 0.00 0.00 0.00 1.40
2008 2102 9.369904 AGCAATGCGACTGAAATTTAATAAATT 57.630 25.926 5.23 5.23 42.62 1.82
2030 2124 7.755582 ATTTTTAAGACAAATCAATAGCGGC 57.244 32.000 0.00 0.00 0.00 6.53
2031 2125 6.509418 TTTTAAGACAAATCAATAGCGGCT 57.491 33.333 7.98 7.98 0.00 5.52
2032 2126 6.509418 TTTAAGACAAATCAATAGCGGCTT 57.491 33.333 8.26 0.00 0.00 4.35
2033 2127 4.622701 AAGACAAATCAATAGCGGCTTC 57.377 40.909 8.26 0.00 0.00 3.86
2034 2128 3.878778 AGACAAATCAATAGCGGCTTCT 58.121 40.909 8.26 0.00 0.00 2.85
2035 2129 4.265073 AGACAAATCAATAGCGGCTTCTT 58.735 39.130 8.26 0.00 0.00 2.52
2036 2130 4.702131 AGACAAATCAATAGCGGCTTCTTT 59.298 37.500 8.26 0.00 0.00 2.52
2037 2131 5.183904 AGACAAATCAATAGCGGCTTCTTTT 59.816 36.000 8.26 0.00 0.00 2.27
2038 2132 5.163513 ACAAATCAATAGCGGCTTCTTTTG 58.836 37.500 8.26 13.40 0.00 2.44
2039 2133 5.163513 CAAATCAATAGCGGCTTCTTTTGT 58.836 37.500 8.26 0.00 0.00 2.83
2040 2134 5.391312 AATCAATAGCGGCTTCTTTTGTT 57.609 34.783 8.26 0.72 0.00 2.83
2041 2135 4.846779 TCAATAGCGGCTTCTTTTGTTT 57.153 36.364 8.26 0.00 0.00 2.83
2042 2136 4.794169 TCAATAGCGGCTTCTTTTGTTTC 58.206 39.130 8.26 0.00 0.00 2.78
2043 2137 4.518970 TCAATAGCGGCTTCTTTTGTTTCT 59.481 37.500 8.26 0.00 0.00 2.52
2044 2138 2.781945 AGCGGCTTCTTTTGTTTCTG 57.218 45.000 0.00 0.00 0.00 3.02
2045 2139 2.024414 AGCGGCTTCTTTTGTTTCTGT 58.976 42.857 0.00 0.00 0.00 3.41
2046 2140 2.427095 AGCGGCTTCTTTTGTTTCTGTT 59.573 40.909 0.00 0.00 0.00 3.16
2047 2141 3.119137 AGCGGCTTCTTTTGTTTCTGTTT 60.119 39.130 0.00 0.00 0.00 2.83
2048 2142 3.242944 GCGGCTTCTTTTGTTTCTGTTTC 59.757 43.478 0.00 0.00 0.00 2.78
2049 2143 4.672409 CGGCTTCTTTTGTTTCTGTTTCT 58.328 39.130 0.00 0.00 0.00 2.52
2143 2240 2.288334 GCTGTTGTTGGCATGTTCATGA 60.288 45.455 15.74 0.00 0.00 3.07
2148 2245 3.327626 TGTTGGCATGTTCATGAAATGC 58.672 40.909 28.63 28.63 46.21 3.56
2158 2255 1.634973 TCATGAAATGCACTCCCTCCA 59.365 47.619 0.00 0.00 46.21 3.86
2175 2272 4.563580 CCCTCCATCCCATAATGTAAGACG 60.564 50.000 0.00 0.00 0.00 4.18
2180 2277 6.887545 TCCATCCCATAATGTAAGACGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
2237 2334 2.076100 TCTGCAGCGTGTTAGATTTGG 58.924 47.619 9.47 0.00 0.00 3.28
2254 2351 7.728847 AGATTTGGTAAATTTCAGGCAAAAC 57.271 32.000 0.00 0.00 0.00 2.43
2256 2353 3.983741 TGGTAAATTTCAGGCAAAACCG 58.016 40.909 0.00 0.00 46.52 4.44
2269 2366 3.185594 GGCAAAACCGGTAAATTTTCAGC 59.814 43.478 8.00 5.40 0.00 4.26
2270 2367 3.804873 GCAAAACCGGTAAATTTTCAGCA 59.195 39.130 8.00 0.00 0.00 4.41
2272 2369 5.558083 GCAAAACCGGTAAATTTTCAGCAAG 60.558 40.000 8.00 0.00 0.00 4.01
2291 2391 3.515602 AGAAAAACCCTCTGCTGATGT 57.484 42.857 0.00 0.00 0.00 3.06
2311 2411 2.472695 TGCTAGTACTGCCCTTTGTG 57.527 50.000 5.39 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.494918 CGACAGATCGGACCCACC 59.505 66.667 0.00 0.00 44.99 4.61
22 23 3.872560 AAACAACGAAACCGACAGATC 57.127 42.857 0.00 0.00 0.00 2.75
23 24 3.002965 GGAAAACAACGAAACCGACAGAT 59.997 43.478 0.00 0.00 0.00 2.90
24 25 2.352342 GGAAAACAACGAAACCGACAGA 59.648 45.455 0.00 0.00 0.00 3.41
25 26 2.540157 GGGAAAACAACGAAACCGACAG 60.540 50.000 0.00 0.00 0.00 3.51
26 27 1.401199 GGGAAAACAACGAAACCGACA 59.599 47.619 0.00 0.00 0.00 4.35
27 28 1.595246 CGGGAAAACAACGAAACCGAC 60.595 52.381 0.00 0.00 42.19 4.79
28 29 0.656785 CGGGAAAACAACGAAACCGA 59.343 50.000 0.00 0.00 42.19 4.69
29 30 0.656785 TCGGGAAAACAACGAAACCG 59.343 50.000 0.00 0.00 41.06 4.44
30 31 1.672363 ACTCGGGAAAACAACGAAACC 59.328 47.619 0.00 0.00 36.08 3.27
31 32 4.534794 TTACTCGGGAAAACAACGAAAC 57.465 40.909 0.00 0.00 36.08 2.78
32 33 5.296283 TCATTTACTCGGGAAAACAACGAAA 59.704 36.000 0.00 0.00 36.08 3.46
33 34 4.815308 TCATTTACTCGGGAAAACAACGAA 59.185 37.500 0.00 0.00 36.08 3.85
34 35 4.378774 TCATTTACTCGGGAAAACAACGA 58.621 39.130 0.00 0.00 35.14 3.85
35 36 4.449743 TCTCATTTACTCGGGAAAACAACG 59.550 41.667 0.00 0.00 0.00 4.10
36 37 5.237779 TGTCTCATTTACTCGGGAAAACAAC 59.762 40.000 0.00 0.00 0.00 3.32
37 38 5.369833 TGTCTCATTTACTCGGGAAAACAA 58.630 37.500 0.00 0.00 0.00 2.83
38 39 4.963373 TGTCTCATTTACTCGGGAAAACA 58.037 39.130 0.00 0.00 0.00 2.83
39 40 5.934935 TTGTCTCATTTACTCGGGAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
40 41 6.234920 TGATTGTCTCATTTACTCGGGAAAA 58.765 36.000 0.00 0.00 0.00 2.29
41 42 5.800296 TGATTGTCTCATTTACTCGGGAAA 58.200 37.500 0.00 0.00 0.00 3.13
42 43 5.046591 ACTGATTGTCTCATTTACTCGGGAA 60.047 40.000 0.00 0.00 32.10 3.97
43 44 4.466370 ACTGATTGTCTCATTTACTCGGGA 59.534 41.667 0.00 0.00 32.10 5.14
44 45 4.568359 CACTGATTGTCTCATTTACTCGGG 59.432 45.833 0.00 0.00 32.10 5.14
45 46 4.033358 GCACTGATTGTCTCATTTACTCGG 59.967 45.833 0.00 0.00 32.10 4.63
46 47 4.867047 AGCACTGATTGTCTCATTTACTCG 59.133 41.667 0.00 0.00 32.10 4.18
47 48 5.293079 GGAGCACTGATTGTCTCATTTACTC 59.707 44.000 0.00 0.00 32.10 2.59
48 49 5.181748 GGAGCACTGATTGTCTCATTTACT 58.818 41.667 0.00 0.00 32.10 2.24
49 50 4.033358 CGGAGCACTGATTGTCTCATTTAC 59.967 45.833 0.00 0.00 32.10 2.01
50 51 4.183865 CGGAGCACTGATTGTCTCATTTA 58.816 43.478 0.00 0.00 32.10 1.40
51 52 3.005554 CGGAGCACTGATTGTCTCATTT 58.994 45.455 0.00 0.00 32.10 2.32
52 53 2.625737 CGGAGCACTGATTGTCTCATT 58.374 47.619 0.00 0.00 32.10 2.57
53 54 2.306341 CGGAGCACTGATTGTCTCAT 57.694 50.000 0.00 0.00 32.10 2.90
54 55 3.820595 CGGAGCACTGATTGTCTCA 57.179 52.632 0.00 0.00 0.00 3.27
68 69 3.190744 TGAGGCTAATCTATAACGCGGAG 59.809 47.826 12.47 1.75 0.00 4.63
69 70 3.151554 TGAGGCTAATCTATAACGCGGA 58.848 45.455 12.47 0.00 0.00 5.54
70 71 3.570926 TGAGGCTAATCTATAACGCGG 57.429 47.619 12.47 0.00 0.00 6.46
71 72 4.923871 ACAATGAGGCTAATCTATAACGCG 59.076 41.667 3.53 3.53 0.00 6.01
72 73 6.347725 CCAACAATGAGGCTAATCTATAACGC 60.348 42.308 0.00 0.00 0.00 4.84
73 74 6.706270 ACCAACAATGAGGCTAATCTATAACG 59.294 38.462 0.00 0.00 0.00 3.18
74 75 7.041098 CCACCAACAATGAGGCTAATCTATAAC 60.041 40.741 0.00 0.00 0.00 1.89
75 76 6.998074 CCACCAACAATGAGGCTAATCTATAA 59.002 38.462 0.00 0.00 0.00 0.98
76 77 6.101150 ACCACCAACAATGAGGCTAATCTATA 59.899 38.462 0.00 0.00 0.00 1.31
77 78 5.103940 ACCACCAACAATGAGGCTAATCTAT 60.104 40.000 0.00 0.00 0.00 1.98
78 79 4.227300 ACCACCAACAATGAGGCTAATCTA 59.773 41.667 0.00 0.00 0.00 1.98
79 80 3.010584 ACCACCAACAATGAGGCTAATCT 59.989 43.478 0.00 0.00 0.00 2.40
80 81 3.356290 ACCACCAACAATGAGGCTAATC 58.644 45.455 0.00 0.00 0.00 1.75
81 82 3.456380 ACCACCAACAATGAGGCTAAT 57.544 42.857 0.00 0.00 0.00 1.73
82 83 2.969821 ACCACCAACAATGAGGCTAA 57.030 45.000 0.00 0.00 0.00 3.09
83 84 2.969821 AACCACCAACAATGAGGCTA 57.030 45.000 0.00 0.00 0.00 3.93
84 85 2.086610 AAACCACCAACAATGAGGCT 57.913 45.000 0.00 0.00 0.00 4.58
85 86 2.908688 AAAACCACCAACAATGAGGC 57.091 45.000 0.00 0.00 0.00 4.70
102 103 5.589855 TCAGATTTGAGACAGAGCACAAAAA 59.410 36.000 0.00 0.00 36.19 1.94
103 104 5.125356 TCAGATTTGAGACAGAGCACAAAA 58.875 37.500 0.00 0.00 36.19 2.44
104 105 4.707105 TCAGATTTGAGACAGAGCACAAA 58.293 39.130 0.00 0.00 36.82 2.83
105 106 4.341366 TCAGATTTGAGACAGAGCACAA 57.659 40.909 0.00 0.00 0.00 3.33
106 107 4.548451 ATCAGATTTGAGACAGAGCACA 57.452 40.909 0.00 0.00 36.61 4.57
107 108 4.808364 GGTATCAGATTTGAGACAGAGCAC 59.192 45.833 12.48 0.00 45.21 4.40
108 109 4.440663 CGGTATCAGATTTGAGACAGAGCA 60.441 45.833 12.48 0.00 45.21 4.26
109 110 4.047822 CGGTATCAGATTTGAGACAGAGC 58.952 47.826 12.48 0.00 45.21 4.09
110 111 5.506686 TCGGTATCAGATTTGAGACAGAG 57.493 43.478 12.48 4.26 45.21 3.35
112 113 5.919707 CAGATCGGTATCAGATTTGAGACAG 59.080 44.000 12.48 8.76 45.21 3.51
113 114 5.360999 ACAGATCGGTATCAGATTTGAGACA 59.639 40.000 12.48 0.00 45.21 3.41
114 115 5.837437 ACAGATCGGTATCAGATTTGAGAC 58.163 41.667 2.50 2.50 43.23 3.36
115 116 6.471233 AACAGATCGGTATCAGATTTGAGA 57.529 37.500 0.00 0.00 36.61 3.27
116 117 6.642950 GGTAACAGATCGGTATCAGATTTGAG 59.357 42.308 0.00 0.00 36.61 3.02
117 118 6.097696 TGGTAACAGATCGGTATCAGATTTGA 59.902 38.462 0.00 0.00 46.17 2.69
118 119 6.280643 TGGTAACAGATCGGTATCAGATTTG 58.719 40.000 0.00 0.00 46.17 2.32
119 120 6.479972 TGGTAACAGATCGGTATCAGATTT 57.520 37.500 0.00 0.00 46.17 2.17
148 149 5.730296 TTACCCAAAACCACCACATTATG 57.270 39.130 0.00 0.00 0.00 1.90
149 150 6.943899 ATTTACCCAAAACCACCACATTAT 57.056 33.333 0.00 0.00 0.00 1.28
150 151 7.509659 AGTTATTTACCCAAAACCACCACATTA 59.490 33.333 0.00 0.00 0.00 1.90
151 152 6.327887 AGTTATTTACCCAAAACCACCACATT 59.672 34.615 0.00 0.00 0.00 2.71
152 153 5.841783 AGTTATTTACCCAAAACCACCACAT 59.158 36.000 0.00 0.00 0.00 3.21
153 154 5.209659 AGTTATTTACCCAAAACCACCACA 58.790 37.500 0.00 0.00 0.00 4.17
154 155 5.537295 AGAGTTATTTACCCAAAACCACCAC 59.463 40.000 0.00 0.00 0.00 4.16
155 156 5.707495 AGAGTTATTTACCCAAAACCACCA 58.293 37.500 0.00 0.00 0.00 4.17
156 157 6.008331 AGAGAGTTATTTACCCAAAACCACC 58.992 40.000 0.00 0.00 0.00 4.61
157 158 8.674607 CATAGAGAGTTATTTACCCAAAACCAC 58.325 37.037 0.00 0.00 0.00 4.16
158 159 7.338449 GCATAGAGAGTTATTTACCCAAAACCA 59.662 37.037 0.00 0.00 0.00 3.67
159 160 7.338449 TGCATAGAGAGTTATTTACCCAAAACC 59.662 37.037 0.00 0.00 0.00 3.27
160 161 8.276252 TGCATAGAGAGTTATTTACCCAAAAC 57.724 34.615 0.00 0.00 0.00 2.43
161 162 7.067008 GCTGCATAGAGAGTTATTTACCCAAAA 59.933 37.037 0.00 0.00 0.00 2.44
162 163 6.542370 GCTGCATAGAGAGTTATTTACCCAAA 59.458 38.462 0.00 0.00 0.00 3.28
163 164 6.055588 GCTGCATAGAGAGTTATTTACCCAA 58.944 40.000 0.00 0.00 0.00 4.12
164 165 5.454755 GGCTGCATAGAGAGTTATTTACCCA 60.455 44.000 0.50 0.00 0.00 4.51
165 166 4.998033 GGCTGCATAGAGAGTTATTTACCC 59.002 45.833 0.50 0.00 0.00 3.69
166 167 5.467063 GTGGCTGCATAGAGAGTTATTTACC 59.533 44.000 0.50 0.00 0.00 2.85
167 168 5.467063 GGTGGCTGCATAGAGAGTTATTTAC 59.533 44.000 0.50 0.00 0.00 2.01
168 169 5.130311 TGGTGGCTGCATAGAGAGTTATTTA 59.870 40.000 0.50 0.00 0.00 1.40
169 170 4.080356 TGGTGGCTGCATAGAGAGTTATTT 60.080 41.667 0.50 0.00 0.00 1.40
170 171 3.455910 TGGTGGCTGCATAGAGAGTTATT 59.544 43.478 0.50 0.00 0.00 1.40
171 172 3.041211 TGGTGGCTGCATAGAGAGTTAT 58.959 45.455 0.50 0.00 0.00 1.89
172 173 2.168521 GTGGTGGCTGCATAGAGAGTTA 59.831 50.000 0.50 0.00 0.00 2.24
173 174 1.065854 GTGGTGGCTGCATAGAGAGTT 60.066 52.381 0.50 0.00 0.00 3.01
174 175 0.539051 GTGGTGGCTGCATAGAGAGT 59.461 55.000 0.50 0.00 0.00 3.24
175 176 0.179062 GGTGGTGGCTGCATAGAGAG 60.179 60.000 0.50 0.00 0.00 3.20
176 177 0.909133 TGGTGGTGGCTGCATAGAGA 60.909 55.000 0.50 0.00 0.00 3.10
177 178 0.745845 GTGGTGGTGGCTGCATAGAG 60.746 60.000 0.50 0.00 0.00 2.43
178 179 1.200760 AGTGGTGGTGGCTGCATAGA 61.201 55.000 0.50 0.00 0.00 1.98
179 180 1.028330 CAGTGGTGGTGGCTGCATAG 61.028 60.000 0.50 0.00 0.00 2.23
180 181 1.002257 CAGTGGTGGTGGCTGCATA 60.002 57.895 0.50 0.00 0.00 3.14
181 182 2.282674 CAGTGGTGGTGGCTGCAT 60.283 61.111 0.50 0.00 0.00 3.96
182 183 4.584518 CCAGTGGTGGTGGCTGCA 62.585 66.667 0.00 0.00 39.30 4.41
184 185 3.889692 ACCCAGTGGTGGTGGCTG 61.890 66.667 8.74 0.00 45.58 4.85
221 222 3.060540 ACACGCGCAATGATTAGATTACG 60.061 43.478 15.09 0.00 0.00 3.18
227 228 0.645355 ACGACACGCGCAATGATTAG 59.355 50.000 15.09 5.95 46.04 1.73
240 241 1.525619 GCAGACAGGTAAACACGACAC 59.474 52.381 0.00 0.00 0.00 3.67
270 271 0.745468 TTTGTGGGTTGTTTACGGGC 59.255 50.000 0.00 0.00 0.00 6.13
271 272 2.288518 CCATTTGTGGGTTGTTTACGGG 60.289 50.000 0.00 0.00 0.00 5.28
273 274 3.551250 GGTCCATTTGTGGGTTGTTTACG 60.551 47.826 0.00 0.00 0.00 3.18
297 302 1.336517 GGGAGACACGACGTGATCAAA 60.337 52.381 33.12 0.00 36.96 2.69
321 326 2.678336 GGTCGTTAGCTTAGCTGCATTT 59.322 45.455 17.97 0.00 40.10 2.32
327 332 2.810650 CGATTGGTCGTTAGCTTAGCT 58.189 47.619 12.67 12.67 42.78 3.32
354 359 1.250154 GCTGCATTGGTGGCTGGTAA 61.250 55.000 0.00 0.00 0.00 2.85
360 365 1.660560 CTACTGGCTGCATTGGTGGC 61.661 60.000 0.50 0.00 0.00 5.01
384 389 5.925509 AGCACTCTGTCAAAGTTAAGGTTA 58.074 37.500 0.00 0.00 0.00 2.85
493 498 4.440802 GCATTCAGAGTCTCCAGTTCGTAT 60.441 45.833 0.00 0.00 0.00 3.06
707 748 3.438781 CAGTAGGGAAATGCGCTGTTTTA 59.561 43.478 9.73 0.00 40.42 1.52
717 758 0.676466 TGCGTGGCAGTAGGGAAATG 60.676 55.000 0.00 0.00 33.32 2.32
718 759 0.676782 GTGCGTGGCAGTAGGGAAAT 60.677 55.000 0.00 0.00 40.08 2.17
763 811 3.086600 CCCTCTGAGCTCCCCCAC 61.087 72.222 12.15 0.00 0.00 4.61
881 934 3.160047 AGGAGGCGAGGATGGCAG 61.160 66.667 0.00 0.00 43.90 4.85
921 974 0.047176 AGAGGAGGAGGAGGAGGAGA 59.953 60.000 0.00 0.00 0.00 3.71
922 975 0.478507 GAGAGGAGGAGGAGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
923 976 0.253868 TGAGAGGAGGAGGAGGAGGA 60.254 60.000 0.00 0.00 0.00 3.71
924 977 0.106217 GTGAGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
925 978 0.628522 TGTGAGAGGAGGAGGAGGAG 59.371 60.000 0.00 0.00 0.00 3.69
926 979 1.006519 CTTGTGAGAGGAGGAGGAGGA 59.993 57.143 0.00 0.00 0.00 3.71
953 1006 2.455674 TGAGATTGACGGGTTGTGAG 57.544 50.000 0.00 0.00 0.00 3.51
954 1007 2.567169 AGATGAGATTGACGGGTTGTGA 59.433 45.455 0.00 0.00 0.00 3.58
955 1008 2.932614 GAGATGAGATTGACGGGTTGTG 59.067 50.000 0.00 0.00 0.00 3.33
956 1009 2.567169 TGAGATGAGATTGACGGGTTGT 59.433 45.455 0.00 0.00 0.00 3.32
957 1010 2.932614 GTGAGATGAGATTGACGGGTTG 59.067 50.000 0.00 0.00 0.00 3.77
958 1011 2.834549 AGTGAGATGAGATTGACGGGTT 59.165 45.455 0.00 0.00 0.00 4.11
959 1012 2.167281 CAGTGAGATGAGATTGACGGGT 59.833 50.000 0.00 0.00 0.00 5.28
960 1013 2.428530 TCAGTGAGATGAGATTGACGGG 59.571 50.000 0.00 0.00 0.00 5.28
961 1014 3.130164 AGTCAGTGAGATGAGATTGACGG 59.870 47.826 0.00 0.00 39.76 4.79
962 1015 4.350346 GAGTCAGTGAGATGAGATTGACG 58.650 47.826 0.00 0.00 39.76 4.35
977 1030 0.247736 GATTGGACAGGCGAGTCAGT 59.752 55.000 13.65 1.10 40.29 3.41
996 1049 0.745845 CGGCAACCTTCTCCATGGAG 60.746 60.000 32.60 32.60 43.21 3.86
997 1050 1.299648 CGGCAACCTTCTCCATGGA 59.700 57.895 15.27 15.27 0.00 3.41
1193 1249 4.033776 CCTCGGGGCTGCTGGAAA 62.034 66.667 0.00 0.00 0.00 3.13
1366 1434 2.954318 ACGATACCTACTTGCCATACGT 59.046 45.455 0.00 0.00 0.00 3.57
1370 1438 1.340248 CCGACGATACCTACTTGCCAT 59.660 52.381 0.00 0.00 0.00 4.40
1373 1441 0.933509 CGCCGACGATACCTACTTGC 60.934 60.000 0.00 0.00 43.93 4.01
1376 1444 1.869767 CTTACGCCGACGATACCTACT 59.130 52.381 0.00 0.00 43.93 2.57
1377 1445 1.599542 ACTTACGCCGACGATACCTAC 59.400 52.381 0.00 0.00 43.93 3.18
1378 1446 1.867233 GACTTACGCCGACGATACCTA 59.133 52.381 0.00 0.00 43.93 3.08
1379 1447 0.659957 GACTTACGCCGACGATACCT 59.340 55.000 0.00 0.00 43.93 3.08
1403 1471 6.040166 AGAGAAATTGACAGACAAATTGCAGT 59.960 34.615 0.00 0.00 42.03 4.40
1489 1576 4.321824 GCGAACCTTTCTTACAGGAGTAGT 60.322 45.833 0.00 0.00 35.14 2.73
1520 1607 7.719633 GGATAATAACAGGAAAAGTGCAGGATA 59.280 37.037 0.00 0.00 0.00 2.59
1541 1628 7.201539 CCACGTTCGTATTTACATGTTGGATAA 60.202 37.037 2.30 0.00 0.00 1.75
1542 1629 6.256104 CCACGTTCGTATTTACATGTTGGATA 59.744 38.462 2.30 0.00 0.00 2.59
1543 1630 5.064198 CCACGTTCGTATTTACATGTTGGAT 59.936 40.000 2.30 0.00 0.00 3.41
1590 1677 1.816224 TCGGAAGCAAAAATAGGCACC 59.184 47.619 0.00 0.00 0.00 5.01
1594 1681 5.062558 CAGCAAAATCGGAAGCAAAAATAGG 59.937 40.000 0.00 0.00 0.00 2.57
1603 1690 3.062323 CTGATCAGCAAAATCGGAAGC 57.938 47.619 10.38 0.00 32.25 3.86
1678 1772 5.581605 GTGCAGAAACAGAAATTTGTCTGA 58.418 37.500 12.99 0.14 46.76 3.27
1680 1774 4.335315 TCGTGCAGAAACAGAAATTTGTCT 59.665 37.500 0.00 0.00 0.00 3.41
1681 1775 4.597079 TCGTGCAGAAACAGAAATTTGTC 58.403 39.130 0.00 0.00 0.00 3.18
1682 1776 4.630894 TCGTGCAGAAACAGAAATTTGT 57.369 36.364 0.00 0.00 0.00 2.83
1683 1777 6.349426 CAAATCGTGCAGAAACAGAAATTTG 58.651 36.000 0.00 0.00 0.00 2.32
1684 1778 6.515043 CAAATCGTGCAGAAACAGAAATTT 57.485 33.333 0.00 0.00 0.00 1.82
1699 1793 0.813610 TATCGGGCAGGCAAATCGTG 60.814 55.000 0.00 0.00 0.00 4.35
1700 1794 0.532862 CTATCGGGCAGGCAAATCGT 60.533 55.000 0.00 0.00 0.00 3.73
1701 1795 0.532862 ACTATCGGGCAGGCAAATCG 60.533 55.000 0.00 0.00 0.00 3.34
1702 1796 2.543777 TACTATCGGGCAGGCAAATC 57.456 50.000 0.00 0.00 0.00 2.17
1703 1797 3.149196 CATTACTATCGGGCAGGCAAAT 58.851 45.455 0.00 0.00 0.00 2.32
1704 1798 2.571212 CATTACTATCGGGCAGGCAAA 58.429 47.619 0.00 0.00 0.00 3.68
1705 1799 1.813862 GCATTACTATCGGGCAGGCAA 60.814 52.381 0.00 0.00 0.00 4.52
1706 1800 0.250295 GCATTACTATCGGGCAGGCA 60.250 55.000 0.00 0.00 0.00 4.75
1707 1801 1.291877 CGCATTACTATCGGGCAGGC 61.292 60.000 0.00 0.00 0.00 4.85
1708 1802 0.317160 TCGCATTACTATCGGGCAGG 59.683 55.000 0.00 0.00 0.00 4.85
1709 1803 1.000163 AGTCGCATTACTATCGGGCAG 60.000 52.381 0.00 0.00 0.00 4.85
1710 1804 1.037493 AGTCGCATTACTATCGGGCA 58.963 50.000 0.00 0.00 0.00 5.36
1711 1805 1.000607 TCAGTCGCATTACTATCGGGC 60.001 52.381 0.00 0.00 0.00 6.13
1712 1806 3.364889 TTCAGTCGCATTACTATCGGG 57.635 47.619 0.00 0.00 0.00 5.14
1713 1807 5.907197 AATTTCAGTCGCATTACTATCGG 57.093 39.130 0.00 0.00 0.00 4.18
1739 1833 9.352784 CCGCTATTGATTTGTCTGAAAATTTTA 57.647 29.630 2.75 0.00 29.89 1.52
1740 1834 7.148590 GCCGCTATTGATTTGTCTGAAAATTTT 60.149 33.333 2.28 2.28 29.89 1.82
1741 1835 6.311200 GCCGCTATTGATTTGTCTGAAAATTT 59.689 34.615 0.00 0.00 29.89 1.82
1742 1836 5.807011 GCCGCTATTGATTTGTCTGAAAATT 59.193 36.000 0.00 0.00 29.89 1.82
1743 1837 5.343249 GCCGCTATTGATTTGTCTGAAAAT 58.657 37.500 0.00 0.00 32.43 1.82
1744 1838 4.380444 GGCCGCTATTGATTTGTCTGAAAA 60.380 41.667 0.00 0.00 0.00 2.29
1745 1839 3.128589 GGCCGCTATTGATTTGTCTGAAA 59.871 43.478 0.00 0.00 0.00 2.69
1746 1840 2.682856 GGCCGCTATTGATTTGTCTGAA 59.317 45.455 0.00 0.00 0.00 3.02
1747 1841 2.092968 AGGCCGCTATTGATTTGTCTGA 60.093 45.455 0.00 0.00 0.00 3.27
1792 1886 1.873591 CATTACTATCGGGCAGGCAAC 59.126 52.381 0.00 0.00 0.00 4.17
1793 1887 1.813862 GCATTACTATCGGGCAGGCAA 60.814 52.381 0.00 0.00 0.00 4.52
1794 1888 0.250295 GCATTACTATCGGGCAGGCA 60.250 55.000 0.00 0.00 0.00 4.75
1795 1889 1.291877 CGCATTACTATCGGGCAGGC 61.292 60.000 0.00 0.00 0.00 4.85
1796 1890 0.317160 TCGCATTACTATCGGGCAGG 59.683 55.000 0.00 0.00 0.00 4.85
1797 1891 1.000163 AGTCGCATTACTATCGGGCAG 60.000 52.381 0.00 0.00 0.00 4.85
1798 1892 1.037493 AGTCGCATTACTATCGGGCA 58.963 50.000 0.00 0.00 0.00 5.36
1799 1893 1.000607 TCAGTCGCATTACTATCGGGC 60.001 52.381 0.00 0.00 0.00 6.13
1800 1894 3.364889 TTCAGTCGCATTACTATCGGG 57.635 47.619 0.00 0.00 0.00 5.14
1801 1895 5.907197 AATTTCAGTCGCATTACTATCGG 57.093 39.130 0.00 0.00 0.00 4.18
1827 1921 9.352784 CCGCTATTGATTTGTCTGAAAATTTTA 57.647 29.630 2.75 0.00 29.89 1.52
1828 1922 7.148590 GCCGCTATTGATTTGTCTGAAAATTTT 60.149 33.333 2.28 2.28 29.89 1.82
1829 1923 6.311200 GCCGCTATTGATTTGTCTGAAAATTT 59.689 34.615 0.00 0.00 29.89 1.82
1830 1924 5.807011 GCCGCTATTGATTTGTCTGAAAATT 59.193 36.000 0.00 0.00 29.89 1.82
1831 1925 5.343249 GCCGCTATTGATTTGTCTGAAAAT 58.657 37.500 0.00 0.00 32.43 1.82
1832 1926 4.380444 GGCCGCTATTGATTTGTCTGAAAA 60.380 41.667 0.00 0.00 0.00 2.29
1833 1927 3.128589 GGCCGCTATTGATTTGTCTGAAA 59.871 43.478 0.00 0.00 0.00 2.69
1834 1928 2.682856 GGCCGCTATTGATTTGTCTGAA 59.317 45.455 0.00 0.00 0.00 3.02
1835 1929 2.092968 AGGCCGCTATTGATTTGTCTGA 60.093 45.455 0.00 0.00 0.00 3.27
1836 1930 2.289002 GAGGCCGCTATTGATTTGTCTG 59.711 50.000 0.00 0.00 0.00 3.51
1837 1931 2.171448 AGAGGCCGCTATTGATTTGTCT 59.829 45.455 7.45 0.00 0.00 3.41
1838 1932 2.565841 AGAGGCCGCTATTGATTTGTC 58.434 47.619 7.45 0.00 0.00 3.18
1839 1933 2.717639 AGAGGCCGCTATTGATTTGT 57.282 45.000 7.45 0.00 0.00 2.83
1840 1934 4.107622 CAAAAGAGGCCGCTATTGATTTG 58.892 43.478 10.31 12.54 0.00 2.32
1841 1935 3.763897 ACAAAAGAGGCCGCTATTGATTT 59.236 39.130 10.31 3.07 0.00 2.17
1842 1936 3.356290 ACAAAAGAGGCCGCTATTGATT 58.644 40.909 10.31 0.00 0.00 2.57
1843 1937 3.004752 ACAAAAGAGGCCGCTATTGAT 57.995 42.857 10.31 0.00 0.00 2.57
1844 1938 2.489938 ACAAAAGAGGCCGCTATTGA 57.510 45.000 10.31 0.00 0.00 2.57
1845 1939 3.191371 AGAAACAAAAGAGGCCGCTATTG 59.809 43.478 10.31 10.93 0.00 1.90
1846 1940 3.191371 CAGAAACAAAAGAGGCCGCTATT 59.809 43.478 10.31 3.72 0.00 1.73
1847 1941 2.749621 CAGAAACAAAAGAGGCCGCTAT 59.250 45.455 10.31 0.00 0.00 2.97
1848 1942 2.151202 CAGAAACAAAAGAGGCCGCTA 58.849 47.619 10.31 0.00 0.00 4.26
1849 1943 0.954452 CAGAAACAAAAGAGGCCGCT 59.046 50.000 1.77 1.77 0.00 5.52
1850 1944 0.668535 ACAGAAACAAAAGAGGCCGC 59.331 50.000 0.00 0.00 0.00 6.53
1851 1945 3.066760 AGAAACAGAAACAAAAGAGGCCG 59.933 43.478 0.00 0.00 0.00 6.13
1852 1946 4.499865 GGAGAAACAGAAACAAAAGAGGCC 60.500 45.833 0.00 0.00 0.00 5.19
1853 1947 4.097892 TGGAGAAACAGAAACAAAAGAGGC 59.902 41.667 0.00 0.00 0.00 4.70
1854 1948 5.582550 GTGGAGAAACAGAAACAAAAGAGG 58.417 41.667 0.00 0.00 0.00 3.69
1855 1949 5.064707 TCGTGGAGAAACAGAAACAAAAGAG 59.935 40.000 0.00 0.00 0.00 2.85
1856 1950 4.938832 TCGTGGAGAAACAGAAACAAAAGA 59.061 37.500 0.00 0.00 0.00 2.52
1857 1951 5.163754 ACTCGTGGAGAAACAGAAACAAAAG 60.164 40.000 0.00 0.00 33.32 2.27
1858 1952 4.698304 ACTCGTGGAGAAACAGAAACAAAA 59.302 37.500 0.00 0.00 33.32 2.44
1859 1953 4.258543 ACTCGTGGAGAAACAGAAACAAA 58.741 39.130 0.00 0.00 33.32 2.83
1860 1954 3.869065 ACTCGTGGAGAAACAGAAACAA 58.131 40.909 0.00 0.00 33.32 2.83
1861 1955 3.536956 ACTCGTGGAGAAACAGAAACA 57.463 42.857 0.00 0.00 33.32 2.83
1862 1956 3.546218 GCAACTCGTGGAGAAACAGAAAC 60.546 47.826 0.00 0.00 33.32 2.78
1863 1957 2.612212 GCAACTCGTGGAGAAACAGAAA 59.388 45.455 0.00 0.00 33.32 2.52
1864 1958 2.210116 GCAACTCGTGGAGAAACAGAA 58.790 47.619 0.00 0.00 33.32 3.02
1865 1959 1.540363 GGCAACTCGTGGAGAAACAGA 60.540 52.381 0.00 0.00 33.32 3.41
1866 1960 0.868406 GGCAACTCGTGGAGAAACAG 59.132 55.000 0.00 0.00 33.32 3.16
1867 1961 3.000815 GGCAACTCGTGGAGAAACA 57.999 52.632 0.00 0.00 33.32 2.83
1880 1974 1.103398 ATTGCTATCGGGCAGGCAAC 61.103 55.000 0.00 0.00 45.35 4.17
1881 1975 1.102809 CATTGCTATCGGGCAGGCAA 61.103 55.000 0.00 0.00 46.32 4.52
1882 1976 1.526686 CATTGCTATCGGGCAGGCA 60.527 57.895 0.00 0.00 43.39 4.75
1883 1977 2.912624 GCATTGCTATCGGGCAGGC 61.913 63.158 0.16 0.00 43.39 4.85
1884 1978 2.610694 CGCATTGCTATCGGGCAGG 61.611 63.158 7.12 0.00 43.39 4.85
1885 1979 0.952497 ATCGCATTGCTATCGGGCAG 60.952 55.000 7.12 0.00 43.39 4.85
1886 1980 0.534877 AATCGCATTGCTATCGGGCA 60.535 50.000 7.12 0.00 40.74 5.36
1887 1981 0.110056 CAATCGCATTGCTATCGGGC 60.110 55.000 7.12 0.00 32.92 6.13
1888 1982 1.511850 TCAATCGCATTGCTATCGGG 58.488 50.000 7.12 0.00 40.05 5.14
1889 1983 3.607422 TTTCAATCGCATTGCTATCGG 57.393 42.857 7.12 0.00 40.05 4.18
1890 1984 7.607552 TTAAATTTCAATCGCATTGCTATCG 57.392 32.000 7.12 0.00 40.05 2.92
1915 2009 9.352784 CCGCTATTGATTTGTCTGAAAATTTTA 57.647 29.630 2.75 0.00 29.89 1.52
1916 2010 7.148590 GCCGCTATTGATTTGTCTGAAAATTTT 60.149 33.333 2.28 2.28 29.89 1.82
1917 2011 6.311200 GCCGCTATTGATTTGTCTGAAAATTT 59.689 34.615 0.00 0.00 29.89 1.82
1918 2012 5.807011 GCCGCTATTGATTTGTCTGAAAATT 59.193 36.000 0.00 0.00 29.89 1.82
1919 2013 5.343249 GCCGCTATTGATTTGTCTGAAAAT 58.657 37.500 0.00 0.00 32.43 1.82
1920 2014 4.380444 GGCCGCTATTGATTTGTCTGAAAA 60.380 41.667 0.00 0.00 0.00 2.29
1921 2015 3.128589 GGCCGCTATTGATTTGTCTGAAA 59.871 43.478 0.00 0.00 0.00 2.69
1922 2016 2.682856 GGCCGCTATTGATTTGTCTGAA 59.317 45.455 0.00 0.00 0.00 3.02
1923 2017 2.092968 AGGCCGCTATTGATTTGTCTGA 60.093 45.455 0.00 0.00 0.00 3.27
1924 2018 2.289002 GAGGCCGCTATTGATTTGTCTG 59.711 50.000 0.00 0.00 0.00 3.51
1925 2019 2.171448 AGAGGCCGCTATTGATTTGTCT 59.829 45.455 7.45 0.00 0.00 3.41
1926 2020 2.565841 AGAGGCCGCTATTGATTTGTC 58.434 47.619 7.45 0.00 0.00 3.18
1927 2021 2.717639 AGAGGCCGCTATTGATTTGT 57.282 45.000 7.45 0.00 0.00 2.83
1928 2022 4.107622 CAAAAGAGGCCGCTATTGATTTG 58.892 43.478 10.31 12.54 0.00 2.32
1929 2023 3.763897 ACAAAAGAGGCCGCTATTGATTT 59.236 39.130 10.31 3.07 0.00 2.17
1930 2024 3.356290 ACAAAAGAGGCCGCTATTGATT 58.644 40.909 10.31 0.00 0.00 2.57
1931 2025 3.004752 ACAAAAGAGGCCGCTATTGAT 57.995 42.857 10.31 0.00 0.00 2.57
1932 2026 2.489938 ACAAAAGAGGCCGCTATTGA 57.510 45.000 10.31 0.00 0.00 2.57
1933 2027 3.191371 AGAAACAAAAGAGGCCGCTATTG 59.809 43.478 10.31 10.93 0.00 1.90
1934 2028 3.421844 AGAAACAAAAGAGGCCGCTATT 58.578 40.909 10.31 3.72 0.00 1.73
1935 2029 3.073274 AGAAACAAAAGAGGCCGCTAT 57.927 42.857 10.31 0.00 0.00 2.97
1936 2030 2.561478 AGAAACAAAAGAGGCCGCTA 57.439 45.000 10.31 0.00 0.00 4.26
1937 2031 1.692411 AAGAAACAAAAGAGGCCGCT 58.308 45.000 1.77 1.77 0.00 5.52
1938 2032 2.509052 AAAGAAACAAAAGAGGCCGC 57.491 45.000 0.00 0.00 0.00 6.53
1939 2033 4.504097 CAGAAAAAGAAACAAAAGAGGCCG 59.496 41.667 0.00 0.00 0.00 6.13
1940 2034 4.271049 GCAGAAAAAGAAACAAAAGAGGCC 59.729 41.667 0.00 0.00 0.00 5.19
1941 2035 4.869861 TGCAGAAAAAGAAACAAAAGAGGC 59.130 37.500 0.00 0.00 0.00 4.70
1942 2036 5.004726 CGTGCAGAAAAAGAAACAAAAGAGG 59.995 40.000 0.00 0.00 0.00 3.69
1943 2037 5.799936 TCGTGCAGAAAAAGAAACAAAAGAG 59.200 36.000 0.00 0.00 0.00 2.85
1944 2038 5.704888 TCGTGCAGAAAAAGAAACAAAAGA 58.295 33.333 0.00 0.00 0.00 2.52
1945 2039 5.572896 ACTCGTGCAGAAAAAGAAACAAAAG 59.427 36.000 0.00 0.00 0.00 2.27
1946 2040 5.465935 ACTCGTGCAGAAAAAGAAACAAAA 58.534 33.333 0.00 0.00 0.00 2.44
1947 2041 5.054390 ACTCGTGCAGAAAAAGAAACAAA 57.946 34.783 0.00 0.00 0.00 2.83
1948 2042 4.695217 ACTCGTGCAGAAAAAGAAACAA 57.305 36.364 0.00 0.00 0.00 2.83
1949 2043 4.411327 CAACTCGTGCAGAAAAAGAAACA 58.589 39.130 0.00 0.00 0.00 2.83
1950 2044 4.998979 CAACTCGTGCAGAAAAAGAAAC 57.001 40.909 0.00 0.00 0.00 2.78
1963 2057 0.739462 TATCGGGCAAGCAACTCGTG 60.739 55.000 0.00 0.00 0.00 4.35
1964 2058 0.460284 CTATCGGGCAAGCAACTCGT 60.460 55.000 0.00 0.00 0.00 4.18
1965 2059 1.766143 GCTATCGGGCAAGCAACTCG 61.766 60.000 0.00 0.00 38.63 4.18
1966 2060 0.744414 TGCTATCGGGCAAGCAACTC 60.744 55.000 0.00 0.00 45.36 3.01
1967 2061 1.299648 TGCTATCGGGCAAGCAACT 59.700 52.632 0.00 0.00 45.36 3.16
1968 2062 3.903783 TGCTATCGGGCAAGCAAC 58.096 55.556 0.00 0.00 45.36 4.17
1974 2068 1.887242 GTCGCATTGCTATCGGGCA 60.887 57.895 7.12 0.00 40.74 5.36
1975 2069 1.595382 AGTCGCATTGCTATCGGGC 60.595 57.895 7.12 0.00 0.00 6.13
1976 2070 0.249447 TCAGTCGCATTGCTATCGGG 60.249 55.000 7.12 0.00 0.00 5.14
1977 2071 1.570813 TTCAGTCGCATTGCTATCGG 58.429 50.000 7.12 0.00 0.00 4.18
1978 2072 3.867055 ATTTCAGTCGCATTGCTATCG 57.133 42.857 7.12 0.00 0.00 2.92
1979 2073 9.663904 TTATTAAATTTCAGTCGCATTGCTATC 57.336 29.630 7.12 0.00 0.00 2.08
1982 2076 8.931385 ATTTATTAAATTTCAGTCGCATTGCT 57.069 26.923 7.12 0.00 0.00 3.91
1983 2077 9.971744 AAATTTATTAAATTTCAGTCGCATTGC 57.028 25.926 17.47 0.00 45.32 3.56
2004 2098 8.655970 GCCGCTATTGATTTGTCTTAAAAATTT 58.344 29.630 0.00 0.00 0.00 1.82
2005 2099 8.034804 AGCCGCTATTGATTTGTCTTAAAAATT 58.965 29.630 0.00 0.00 0.00 1.82
2006 2100 7.547227 AGCCGCTATTGATTTGTCTTAAAAAT 58.453 30.769 0.00 0.00 0.00 1.82
2007 2101 6.919721 AGCCGCTATTGATTTGTCTTAAAAA 58.080 32.000 0.00 0.00 0.00 1.94
2008 2102 6.509418 AGCCGCTATTGATTTGTCTTAAAA 57.491 33.333 0.00 0.00 0.00 1.52
2009 2103 6.374333 AGAAGCCGCTATTGATTTGTCTTAAA 59.626 34.615 0.00 0.00 0.00 1.52
2010 2104 5.880332 AGAAGCCGCTATTGATTTGTCTTAA 59.120 36.000 0.00 0.00 0.00 1.85
2011 2105 5.428253 AGAAGCCGCTATTGATTTGTCTTA 58.572 37.500 0.00 0.00 0.00 2.10
2012 2106 4.265073 AGAAGCCGCTATTGATTTGTCTT 58.735 39.130 0.00 0.00 0.00 3.01
2013 2107 3.878778 AGAAGCCGCTATTGATTTGTCT 58.121 40.909 0.00 0.00 0.00 3.41
2014 2108 4.622701 AAGAAGCCGCTATTGATTTGTC 57.377 40.909 0.00 0.00 0.00 3.18
2015 2109 5.163513 CAAAAGAAGCCGCTATTGATTTGT 58.836 37.500 0.00 0.00 0.00 2.83
2016 2110 5.163513 ACAAAAGAAGCCGCTATTGATTTG 58.836 37.500 12.43 12.22 0.00 2.32
2017 2111 5.391312 ACAAAAGAAGCCGCTATTGATTT 57.609 34.783 12.43 1.30 0.00 2.17
2018 2112 5.391312 AACAAAAGAAGCCGCTATTGATT 57.609 34.783 12.43 4.12 0.00 2.57
2019 2113 5.183904 AGAAACAAAAGAAGCCGCTATTGAT 59.816 36.000 12.43 1.91 0.00 2.57
2020 2114 4.518970 AGAAACAAAAGAAGCCGCTATTGA 59.481 37.500 12.43 0.00 0.00 2.57
2021 2115 4.618489 CAGAAACAAAAGAAGCCGCTATTG 59.382 41.667 0.00 0.16 0.00 1.90
2022 2116 4.278419 ACAGAAACAAAAGAAGCCGCTATT 59.722 37.500 0.00 0.00 0.00 1.73
2023 2117 3.821033 ACAGAAACAAAAGAAGCCGCTAT 59.179 39.130 0.00 0.00 0.00 2.97
2024 2118 3.211045 ACAGAAACAAAAGAAGCCGCTA 58.789 40.909 0.00 0.00 0.00 4.26
2025 2119 2.024414 ACAGAAACAAAAGAAGCCGCT 58.976 42.857 0.00 0.00 0.00 5.52
2026 2120 2.492019 ACAGAAACAAAAGAAGCCGC 57.508 45.000 0.00 0.00 0.00 6.53
2027 2121 4.500477 CAGAAACAGAAACAAAAGAAGCCG 59.500 41.667 0.00 0.00 0.00 5.52
2028 2122 4.268644 GCAGAAACAGAAACAAAAGAAGCC 59.731 41.667 0.00 0.00 0.00 4.35
2029 2123 4.864247 TGCAGAAACAGAAACAAAAGAAGC 59.136 37.500 0.00 0.00 0.00 3.86
2030 2124 5.003778 CGTGCAGAAACAGAAACAAAAGAAG 59.996 40.000 0.00 0.00 0.00 2.85
2031 2125 4.856487 CGTGCAGAAACAGAAACAAAAGAA 59.144 37.500 0.00 0.00 0.00 2.52
2032 2126 4.155099 TCGTGCAGAAACAGAAACAAAAGA 59.845 37.500 0.00 0.00 0.00 2.52
2033 2127 4.411327 TCGTGCAGAAACAGAAACAAAAG 58.589 39.130 0.00 0.00 0.00 2.27
2034 2128 4.083003 ACTCGTGCAGAAACAGAAACAAAA 60.083 37.500 0.00 0.00 0.00 2.44
2035 2129 3.438781 ACTCGTGCAGAAACAGAAACAAA 59.561 39.130 0.00 0.00 0.00 2.83
2036 2130 3.006940 ACTCGTGCAGAAACAGAAACAA 58.993 40.909 0.00 0.00 0.00 2.83
2037 2131 2.627945 ACTCGTGCAGAAACAGAAACA 58.372 42.857 0.00 0.00 0.00 2.83
2038 2132 3.354397 CAACTCGTGCAGAAACAGAAAC 58.646 45.455 0.00 0.00 0.00 2.78
2039 2133 3.673746 CAACTCGTGCAGAAACAGAAA 57.326 42.857 0.00 0.00 0.00 2.52
2143 2240 0.259938 GGGATGGAGGGAGTGCATTT 59.740 55.000 0.00 0.00 37.34 2.32
2148 2245 2.713167 ACATTATGGGATGGAGGGAGTG 59.287 50.000 0.00 0.00 0.00 3.51
2180 2277 7.039853 TGCAAATTACTTCCTTCATCATGTCAA 60.040 33.333 0.00 0.00 0.00 3.18
2186 2283 6.294675 CCAGTTGCAAATTACTTCCTTCATCA 60.295 38.462 0.00 0.00 0.00 3.07
2187 2284 6.095377 CCAGTTGCAAATTACTTCCTTCATC 58.905 40.000 0.00 0.00 0.00 2.92
2188 2285 5.539955 ACCAGTTGCAAATTACTTCCTTCAT 59.460 36.000 0.00 0.00 0.00 2.57
2189 2286 4.892934 ACCAGTTGCAAATTACTTCCTTCA 59.107 37.500 0.00 0.00 0.00 3.02
2190 2287 5.453567 ACCAGTTGCAAATTACTTCCTTC 57.546 39.130 0.00 0.00 0.00 3.46
2191 2288 6.969993 TTACCAGTTGCAAATTACTTCCTT 57.030 33.333 0.00 0.00 0.00 3.36
2192 2289 6.969993 TTTACCAGTTGCAAATTACTTCCT 57.030 33.333 0.00 0.00 0.00 3.36
2193 2290 8.088365 AGAATTTACCAGTTGCAAATTACTTCC 58.912 33.333 0.00 0.00 33.26 3.46
2194 2291 8.915654 CAGAATTTACCAGTTGCAAATTACTTC 58.084 33.333 0.00 0.00 33.26 3.01
2195 2292 7.384932 GCAGAATTTACCAGTTGCAAATTACTT 59.615 33.333 0.00 0.00 33.26 2.24
2196 2293 6.868339 GCAGAATTTACCAGTTGCAAATTACT 59.132 34.615 0.00 0.00 33.26 2.24
2197 2294 6.644592 TGCAGAATTTACCAGTTGCAAATTAC 59.355 34.615 0.00 0.00 38.47 1.89
2237 2334 3.985008 ACCGGTTTTGCCTGAAATTTAC 58.015 40.909 0.00 0.00 34.25 2.01
2269 2366 3.571401 ACATCAGCAGAGGGTTTTTCTTG 59.429 43.478 0.00 0.00 0.00 3.02
2270 2367 3.837355 ACATCAGCAGAGGGTTTTTCTT 58.163 40.909 0.00 0.00 0.00 2.52
2272 2369 3.858503 GCAACATCAGCAGAGGGTTTTTC 60.859 47.826 0.00 0.00 0.00 2.29
2277 2377 1.209019 CTAGCAACATCAGCAGAGGGT 59.791 52.381 0.00 0.00 0.00 4.34
2278 2378 1.209019 ACTAGCAACATCAGCAGAGGG 59.791 52.381 0.00 0.00 0.00 4.30
2291 2391 2.105821 ACACAAAGGGCAGTACTAGCAA 59.894 45.455 15.90 0.00 0.00 3.91
2311 2411 4.150098 CGTTTTACACTCTAGGCTCAACAC 59.850 45.833 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.