AutoCloner

Multiple sequence alignment - TraesCS6D01G276100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G276100	chr6D	100.000	2507	0	0	1	2507	384535398	384532892	0.000000e+00	4630.0
1	TraesCS6D01G276100	chr6D	95.697	674	20	3	277	944	384552331	384551661	0.000000e+00	1075.0
2	TraesCS6D01G276100	chr6D	92.830	265	12	1	23	287	384552763	384552506	6.550000e-101	377.0
3	TraesCS6D01G276100	chr6B	93.930	1598	82	12	921	2507	574736404	574734811	0.000000e+00	2399.0
4	TraesCS6D01G276100	chr6B	89.105	514	31	9	420	922	574736934	574736435	1.270000e-172	616.0
5	TraesCS6D01G276100	chr6B	89.333	75	6	2	321	394	512188515	512188588	2.660000e-15	93.5
6	TraesCS6D01G276100	chr6A	92.809	1335	67	16	306	1621	529049183	529047859	0.000000e+00	1906.0
7	TraesCS6D01G276100	chr6A	94.262	244	13	1	68	311	207793765	207794007	3.050000e-99	372.0
8	TraesCS6D01G276100	chr6A	89.837	246	20	4	1605	1845	529046912	529046667	6.730000e-81	311.0
9	TraesCS6D01G276100	chr6A	84.188	234	33	4	459	691	535814788	535815018	9.020000e-55	224.0
10	TraesCS6D01G276100	chr6A	82.379	227	36	4	461	686	600532764	600532541	7.080000e-46	195.0
11	TraesCS6D01G276100	chr6A	90.667	75	5	2	321	394	64260715	64260788	5.710000e-17	99.0
12	TraesCS6D01G276100	chr2D	94.400	250	14	0	62	311	541547282	541547531	3.910000e-103	385.0
13	TraesCS6D01G276100	chr2D	100.000	28	0	0	1	28	52832425	52832398	5.000000e-03	52.8
14	TraesCS6D01G276100	chr4A	94.650	243	13	0	69	311	615435032	615435274	6.550000e-101	377.0
15	TraesCS6D01G276100	chr3D	94.650	243	13	0	69	311	269465749	269465507	6.550000e-101	377.0
16	TraesCS6D01G276100	chr1D	94.650	243	13	0	69	311	448103137	448103379	6.550000e-101	377.0
17	TraesCS6D01G276100	chr1D	82.251	231	36	5	462	690	1131749	1131976	7.080000e-46	195.0
18	TraesCS6D01G276100	chr4D	94.239	243	14	0	69	311	115044279	115044521	3.050000e-99	372.0
19	TraesCS6D01G276100	chr4D	92.578	256	16	2	69	321	477414581	477414326	5.100000e-97	364.0
20	TraesCS6D01G276100	chr5D	93.200	250	17	0	62	311	486285071	486284822	3.940000e-98	368.0
21	TraesCS6D01G276100	chr5D	86.567	67	7	2	1424	1489	246766777	246766842	3.460000e-09	73.1
22	TraesCS6D01G276100	chr5D	100.000	29	0	0	1	29	535524413	535524441	1.000000e-03	54.7
23	TraesCS6D01G276100	chr7D	86.752	234	27	3	459	691	339118812	339118582	8.900000e-65	257.0
24	TraesCS6D01G276100	chr5A	86.266	233	28	4	461	692	663304011	663303782	1.490000e-62	250.0
25	TraesCS6D01G276100	chr5A	86.567	67	7	2	1424	1489	330964462	330964527	3.460000e-09	73.1
26	TraesCS6D01G276100	chr1A	85.776	232	27	5	461	691	337949489	337949263	8.960000e-60	241.0
27	TraesCS6D01G276100	chr7A	84.188	234	32	4	459	690	711188194	711187964	3.250000e-54	222.0
28	TraesCS6D01G276100	chr7A	88.235	85	5	5	320	403	563508476	563508556	2.050000e-16	97.1
29	TraesCS6D01G276100	chr2B	90.789	76	5	2	321	395	754008461	754008535	1.590000e-17	100.0
30	TraesCS6D01G276100	chr7B	88.235	85	5	4	320	403	526430891	526430971	2.050000e-16	97.1
31	TraesCS6D01G276100	chr3B	85.882	85	9	2	321	403	525236501	525236418	1.240000e-13	87.9
32	TraesCS6D01G276100	chr3B	100.000	28	0	0	1	28	538261701	538261674	5.000000e-03	52.8
33	TraesCS6D01G276100	chr3A	84.884	86	11	2	310	394	617425826	617425910	4.440000e-13	86.1
34	TraesCS6D01G276100	chr5B	88.060	67	6	2	1424	1489	281644316	281644251	7.430000e-11	78.7
35	TraesCS6D01G276100	chr5B	100.000	28	0	0	1	28	320084805	320084778	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G276100	chr6D	384532892	384535398	2506	True	4630.0	4630	100.0000	1	2507	1	chr6D.!!$R1	2506
1	TraesCS6D01G276100	chr6D	384551661	384552763	1102	True	726.0	1075	94.2635	23	944	2	chr6D.!!$R2	921
2	TraesCS6D01G276100	chr6B	574734811	574736934	2123	True	1507.5	2399	91.5175	420	2507	2	chr6B.!!$R1	2087
3	TraesCS6D01G276100	chr6A	529046667	529049183	2516	True	1108.5	1906	91.3230	306	1845	2	chr6A.!!$R2	1539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
945	1197	0.542702	CAGAGCCCAAAACCCCACAT	60.543	55.0	0.0	0.0	0.0	3.21	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2147	3376	0.451383	GTTCACATGCATTAGCGGCA	59.549	50.0	1.45	0.0	46.23	5.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
92	93	2.483877	AGTCAATGTGTACGTGCAATGG	59.516	45.455	8.25	2.66	0.00	3.16
104	105	3.816091	CGTGCAATGGACGTTAATTTGA	58.184	40.909	18.94	0.00	32.06	2.69
124	125	8.786937	ATTTGAAAGTATATTAAGTGCATGCG	57.213	30.769	14.09	0.00	0.00	4.73
234	235	3.428180	GCTCGACATTGAAGCAGTCTAGA	60.428	47.826	0.00	0.00	29.49	2.43
243	244	5.883685	TGAAGCAGTCTAGATCATTGGAT	57.116	39.130	0.00	0.00	36.13	3.41
244	245	6.244552	TGAAGCAGTCTAGATCATTGGATT	57.755	37.500	0.00	0.00	32.67	3.01
245	246	6.053650	TGAAGCAGTCTAGATCATTGGATTG	58.946	40.000	0.00	0.00	32.67	2.67
246	247	5.883685	AGCAGTCTAGATCATTGGATTGA	57.116	39.130	0.00	0.00	32.67	2.57
247	248	5.609423	AGCAGTCTAGATCATTGGATTGAC	58.391	41.667	0.00	0.00	32.67	3.18
248	249	5.129980	AGCAGTCTAGATCATTGGATTGACA	59.870	40.000	0.00	0.00	34.22	3.58
249	250	5.996513	GCAGTCTAGATCATTGGATTGACAT	59.003	40.000	0.00	0.00	34.22	3.06
259	260	7.648039	TCATTGGATTGACATGATTTGATGA	57.352	32.000	0.00	0.00	0.00	2.92
298	484	6.086011	TCTGCCCCTTTGGATCTTTTTATA	57.914	37.500	0.00	0.00	35.39	0.98
405	598	9.799106	CTTATGGAGGGAGTACATTATTTTCAT	57.201	33.333	0.00	0.00	0.00	2.57
457	650	4.763279	CGGTACTTTGTAAAATCAAGGGGT	59.237	41.667	0.00	0.00	0.00	4.95
608	802	8.558973	TTTTTCCAGAAAATTGTCATGTTTGT	57.441	26.923	6.40	0.00	39.69	2.83
609	803	7.536895	TTTCCAGAAAATTGTCATGTTTGTG	57.463	32.000	0.00	0.00	0.00	3.33
945	1197	0.542702	CAGAGCCCAAAACCCCACAT	60.543	55.000	0.00	0.00	0.00	3.21
947	1199	1.595093	GAGCCCAAAACCCCACATCG	61.595	60.000	0.00	0.00	0.00	3.84
1247	1500	2.650196	CGACGGGTACGGGTTGAA	59.350	61.111	0.00	0.00	46.48	2.69
1260	1513	1.610624	GGGTTGAACAGCATCGAGGAA	60.611	52.381	0.00	0.00	0.00	3.36
1520	1773	2.809601	GTGATCCGTTCGCGCTGT	60.810	61.111	5.56	0.00	39.70	4.40
1630	2846	7.343357	TGTAATGGGATTAGTTAGTTTCTGGG	58.657	38.462	0.00	0.00	0.00	4.45
1631	2847	4.230745	TGGGATTAGTTAGTTTCTGGGC	57.769	45.455	0.00	0.00	0.00	5.36
1781	2999	7.167302	CGATCGCATTAGGAAGATATGAATCTC	59.833	40.741	0.26	0.00	41.81	2.75
1824	3045	6.470235	GCCGACACATATTTTCTTTCTGATTG	59.530	38.462	0.00	0.00	0.00	2.67
1834	3055	7.496529	TTTTCTTTCTGATTGTCTCGAATGT	57.503	32.000	0.00	0.00	0.00	2.71
1863	3084	8.314751	AGCAGTGGTATGTTAGAATGTATATCC	58.685	37.037	0.00	0.00	0.00	2.59
1941	3163	2.033448	TCCGGGGTGCAATCACAC	59.967	61.111	0.00	0.00	45.77	3.82
1951	3173	4.397730	GGGTGCAATCACACAATATGTACA	59.602	41.667	0.00	0.00	45.79	2.90
1956	3178	7.218773	GTGCAATCACACAATATGTACATGTTC	59.781	37.037	18.81	0.00	40.64	3.18
1974	3196	7.910304	ACATGTTCGAGTGCTTCTAAATATTC	58.090	34.615	0.00	0.00	0.00	1.75
1975	3197	7.549134	ACATGTTCGAGTGCTTCTAAATATTCA	59.451	33.333	0.00	0.00	0.00	2.57
1986	3208	8.530311	TGCTTCTAAATATTCATGGCAAAAGAA	58.470	29.630	0.00	0.00	0.00	2.52
1987	3209	9.028185	GCTTCTAAATATTCATGGCAAAAGAAG	57.972	33.333	0.00	12.63	39.31	2.85
2008	3231	7.039882	AGAAGTCTTTTCTACGTGAACTTTGA	58.960	34.615	0.00	0.00	33.88	2.69
2014	3237	4.585955	TCTACGTGAACTTTGAGAGCTT	57.414	40.909	0.00	0.00	0.00	3.74
2015	3238	4.547532	TCTACGTGAACTTTGAGAGCTTC	58.452	43.478	0.00	0.00	0.00	3.86
2019	3242	4.636206	ACGTGAACTTTGAGAGCTTCTTTT	59.364	37.500	0.00	0.00	0.00	2.27
2026	3253	8.877808	AACTTTGAGAGCTTCTTTTTAAATGG	57.122	30.769	0.00	0.00	0.00	3.16
2053	3280	4.094294	ACCCACGATTTCATAAATCACACG	59.906	41.667	11.69	0.00	45.94	4.49
2064	3291	3.350219	AAATCACACGGGCTCAGTAAT	57.650	42.857	0.00	0.00	0.00	1.89
2066	3293	4.481368	AATCACACGGGCTCAGTAATAA	57.519	40.909	0.00	0.00	0.00	1.40
2073	3300	5.163237	ACACGGGCTCAGTAATAATATTGGT	60.163	40.000	0.00	0.00	0.00	3.67
2080	3307	7.149973	GCTCAGTAATAATATTGGTCCGTACA	58.850	38.462	0.00	0.00	0.00	2.90
2084	3311	9.100554	CAGTAATAATATTGGTCCGTACAAACA	57.899	33.333	0.00	0.00	0.00	2.83
2098	3325	5.965334	CCGTACAAACATTTACATCATCAGC	59.035	40.000	0.00	0.00	0.00	4.26
2109	3338	9.880064	CATTTACATCATCAGCTAAATCTTCAG	57.120	33.333	0.00	0.00	0.00	3.02
2132	3361	0.467290	AAACTTGGCCGTCATGGTGT	60.467	50.000	0.00	0.00	41.21	4.16
2147	3376	2.629002	GTGTCCACGAGCACCAAAT	58.371	52.632	0.00	0.00	0.00	2.32
2175	3404	0.961019	TGCATGTGAACTTTGGGAGC	59.039	50.000	0.00	0.00	0.00	4.70
2180	3409	4.798574	CATGTGAACTTTGGGAGCTTTAC	58.201	43.478	0.00	0.00	0.00	2.01
2197	3426	5.521735	AGCTTTACTGATTGATAGCAAGTCG	59.478	40.000	0.00	0.00	37.45	4.18
2209	3438	6.573434	TGATAGCAAGTCGATTACAATCAGT	58.427	36.000	3.07	0.00	35.11	3.41
2242	3471	1.882623	CACAAGGAAGTCCAGGCTTTC	59.117	52.381	0.00	0.00	38.89	2.62
2244	3473	1.882623	CAAGGAAGTCCAGGCTTTCAC	59.117	52.381	0.00	0.00	38.89	3.18
2250	3479	1.202818	AGTCCAGGCTTTCACTGAACC	60.203	52.381	0.00	0.00	38.20	3.62
2263	3492	1.835483	CTGAACCAGCAGTCGCACAC	61.835	60.000	0.00	0.00	42.27	3.82
2286	3515	1.677576	TCAGAGTGCAAACAAGCTTGG	59.322	47.619	29.18	13.54	34.99	3.61
2319	3548	8.125448	GGAAAGATATGCCGAATTATTAGCATC	58.875	37.037	15.32	6.58	44.48	3.91
2394	3623	7.435488	CCTATTTCAACTAAGATAGGTGTCACG	59.565	40.741	2.62	0.00	43.90	4.35
2418	3647	2.029380	CCATCTGGAGTTGTGACGTGTA	60.029	50.000	0.00	0.00	37.39	2.90
2419	3648	3.368427	CCATCTGGAGTTGTGACGTGTAT	60.368	47.826	0.00	0.00	37.39	2.29
2422	3651	3.192001	TCTGGAGTTGTGACGTGTATACC	59.808	47.826	0.00	0.00	0.00	2.73
2423	3652	2.095110	TGGAGTTGTGACGTGTATACCG	60.095	50.000	0.00	10.87	0.00	4.02
2443	3672	2.029470	CGGAGGATGATGGTCTCTAAGC	60.029	54.545	0.00	0.00	0.00	3.09
2463	3692	2.422519	GCAATCCATCTCCATCACCACT	60.423	50.000	0.00	0.00	0.00	4.00
2487	3716	2.034053	CGCCCTCTAAGTTGTGCAAAAA	59.966	45.455	0.00	0.00	0.00	1.94
2499	3728	3.030291	TGTGCAAAAACCACTCCTTCAT	58.970	40.909	0.00	0.00	34.38	2.57
2501	3730	3.030291	TGCAAAAACCACTCCTTCATGT	58.970	40.909	0.00	0.00	0.00	3.21

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.031611	CCACTACTAGGAAAAGGCCTACT	58.968	47.826	5.16	4.94	39.50	2.57
1	2	4.028825	TCCACTACTAGGAAAAGGCCTAC	58.971	47.826	5.16	0.00	39.50	3.18
2	3	4.341863	TCCACTACTAGGAAAAGGCCTA	57.658	45.455	5.16	0.00	39.50	3.93
3	4	3.200958	TCCACTACTAGGAAAAGGCCT	57.799	47.619	0.00	0.00	42.15	5.19
4	5	3.518303	TCTTCCACTACTAGGAAAAGGCC	59.482	47.826	0.00	0.00	44.07	5.19
5	6	4.820894	TCTTCCACTACTAGGAAAAGGC	57.179	45.455	0.00	0.00	44.07	4.35
6	7	5.484290	TCCTTCTTCCACTACTAGGAAAAGG	59.516	44.000	19.01	19.01	44.07	3.11
7	8	6.211785	AGTCCTTCTTCCACTACTAGGAAAAG	59.788	42.308	0.00	0.00	44.07	2.27
8	9	6.082707	AGTCCTTCTTCCACTACTAGGAAAA	58.917	40.000	0.00	0.00	44.07	2.29
9	10	5.652324	AGTCCTTCTTCCACTACTAGGAAA	58.348	41.667	0.00	0.00	44.07	3.13
10	11	5.272405	AGTCCTTCTTCCACTACTAGGAA	57.728	43.478	0.00	0.00	42.62	3.36
11	12	4.949966	AGTCCTTCTTCCACTACTAGGA	57.050	45.455	0.00	0.00	0.00	2.94
12	13	6.404513	CGTTTAGTCCTTCTTCCACTACTAGG	60.405	46.154	0.00	0.00	0.00	3.02
13	14	6.404513	CCGTTTAGTCCTTCTTCCACTACTAG	60.405	46.154	0.00	0.00	0.00	2.57
14	15	5.416952	CCGTTTAGTCCTTCTTCCACTACTA	59.583	44.000	0.00	0.00	0.00	1.82
15	16	4.220163	CCGTTTAGTCCTTCTTCCACTACT	59.780	45.833	0.00	0.00	0.00	2.57
16	17	4.492611	CCGTTTAGTCCTTCTTCCACTAC	58.507	47.826	0.00	0.00	0.00	2.73
17	18	3.056322	GCCGTTTAGTCCTTCTTCCACTA	60.056	47.826	0.00	0.00	0.00	2.74
18	19	2.289506	GCCGTTTAGTCCTTCTTCCACT	60.290	50.000	0.00	0.00	0.00	4.00
19	20	2.074576	GCCGTTTAGTCCTTCTTCCAC	58.925	52.381	0.00	0.00	0.00	4.02
20	21	1.695242	TGCCGTTTAGTCCTTCTTCCA	59.305	47.619	0.00	0.00	0.00	3.53
21	22	2.467566	TGCCGTTTAGTCCTTCTTCC	57.532	50.000	0.00	0.00	0.00	3.46
104	105	8.792830	ATATCCGCATGCACTTAATATACTTT	57.207	30.769	19.57	0.00	0.00	2.66
177	178	1.467883	GCGTGCAGCTAATTTCATGCA	60.468	47.619	6.96	6.96	45.82	3.96
234	235	8.141909	GTCATCAAATCATGTCAATCCAATGAT	58.858	33.333	0.00	0.00	33.84	2.45
243	244	4.831107	TCTCGGTCATCAAATCATGTCAA	58.169	39.130	0.00	0.00	0.00	3.18
244	245	4.470334	TCTCGGTCATCAAATCATGTCA	57.530	40.909	0.00	0.00	0.00	3.58
245	246	5.998454	AATCTCGGTCATCAAATCATGTC	57.002	39.130	0.00	0.00	0.00	3.06
246	247	8.347771	CAATTAATCTCGGTCATCAAATCATGT	58.652	33.333	0.00	0.00	0.00	3.21
247	248	7.806487	CCAATTAATCTCGGTCATCAAATCATG	59.194	37.037	0.00	0.00	0.00	3.07
248	249	7.720957	TCCAATTAATCTCGGTCATCAAATCAT	59.279	33.333	0.00	0.00	0.00	2.45
249	250	7.053498	TCCAATTAATCTCGGTCATCAAATCA	58.947	34.615	0.00	0.00	0.00	2.57
259	260	3.496870	GGGCAGATCCAATTAATCTCGGT	60.497	47.826	0.62	0.00	36.21	4.69
379	572	9.799106	ATGAAAATAATGTACTCCCTCCATAAG	57.201	33.333	0.00	0.00	0.00	1.73
405	598	6.052360	TGTATGCATCACGGCTAAGAAATTA	58.948	36.000	0.19	0.00	34.04	1.40
457	650	2.286595	CGGACGTTCGAGATTTATCGGA	60.287	50.000	11.86	0.00	42.93	4.55
559	752	2.092807	ACCCGAACTGGTACAAAGTTGT	60.093	45.455	15.61	1.75	37.98	3.32
608	802	2.223876	ACTTTAGTTCACGCGAGGTTCA	60.224	45.455	15.93	0.00	0.00	3.18
609	803	2.401351	ACTTTAGTTCACGCGAGGTTC	58.599	47.619	15.93	0.00	0.00	3.62
825	1042	4.303086	TCGGCGTTAACAAAATTGGAAA	57.697	36.364	6.85	0.00	0.00	3.13
945	1197	3.007516	CGTTTCCGTGTGTTGCGA	58.992	55.556	0.00	0.00	0.00	5.10
947	1199	1.937362	GTGCGTTTCCGTGTGTTGC	60.937	57.895	0.00	0.00	36.15	4.17
1237	1490	0.604073	TCGATGCTGTTCAACCCGTA	59.396	50.000	0.00	0.00	0.00	4.02
1305	1558	2.028484	TCAAACTCCGCGAACGCT	59.972	55.556	8.23	0.00	39.32	5.07
1315	1568	0.662374	TCGCCGTTCTCGTCAAACTC	60.662	55.000	0.00	0.00	35.01	3.01
1520	1773	4.037327	CGAAGGAGAAGCATAGACAGATCA	59.963	45.833	0.00	0.00	0.00	2.92
1555	1808	0.961019	ACACTTGCCGGTAACTACGA	59.039	50.000	0.00	0.00	0.00	3.43
1630	2846	3.465871	GGATCATCCTCTCAAGTTCTGC	58.534	50.000	0.00	0.00	32.53	4.26
1631	2847	3.492309	CCGGATCATCCTCTCAAGTTCTG	60.492	52.174	1.10	0.00	33.30	3.02
1824	3045	1.728971	CCACTGCTTCACATTCGAGAC	59.271	52.381	0.00	0.00	0.00	3.36
1834	3055	5.804639	ACATTCTAACATACCACTGCTTCA	58.195	37.500	0.00	0.00	0.00	3.02
1863	3084	8.301720	TGCCATACACGTATAGACCTATAAAAG	58.698	37.037	0.00	0.00	30.60	2.27
1941	3163	5.973651	AGCACTCGAACATGTACATATTG	57.026	39.130	8.32	4.99	0.00	1.90
1942	3164	6.341316	AGAAGCACTCGAACATGTACATATT	58.659	36.000	8.32	2.89	0.00	1.28
1951	3173	8.554528	CATGAATATTTAGAAGCACTCGAACAT	58.445	33.333	0.00	0.00	0.00	2.71
1956	3178	5.237127	TGCCATGAATATTTAGAAGCACTCG	59.763	40.000	0.00	0.00	0.00	4.18
1986	3208	6.570692	TCTCAAAGTTCACGTAGAAAAGACT	58.429	36.000	0.00	0.00	38.13	3.24
1987	3209	6.562455	GCTCTCAAAGTTCACGTAGAAAAGAC	60.562	42.308	0.00	0.00	38.13	3.01
1989	3211	5.463724	AGCTCTCAAAGTTCACGTAGAAAAG	59.536	40.000	0.00	0.00	38.13	2.27
1994	3217	4.551388	AGAAGCTCTCAAAGTTCACGTAG	58.449	43.478	0.00	0.00	0.00	3.51
2008	3231	6.239317	GGGTGTTCCATTTAAAAAGAAGCTCT	60.239	38.462	0.00	0.00	35.00	4.09
2040	3267	2.236146	ACTGAGCCCGTGTGATTTATGA	59.764	45.455	0.00	0.00	0.00	2.15
2053	3280	4.935808	CGGACCAATATTATTACTGAGCCC	59.064	45.833	0.00	0.00	0.00	5.19
2064	3291	9.445878	TGTAAATGTTTGTACGGACCAATATTA	57.554	29.630	6.95	0.00	26.75	0.98
2066	3293	7.925043	TGTAAATGTTTGTACGGACCAATAT	57.075	32.000	0.00	0.00	0.00	1.28
2073	3300	6.183360	GCTGATGATGTAAATGTTTGTACGGA	60.183	38.462	0.00	0.00	0.00	4.69
2084	3311	9.064706	CCTGAAGATTTAGCTGATGATGTAAAT	57.935	33.333	0.00	0.00	0.00	1.40
2098	3325	5.064441	CCAAGTTTGGCCTGAAGATTTAG	57.936	43.478	3.32	0.00	42.21	1.85
2147	3376	0.451383	GTTCACATGCATTAGCGGCA	59.549	50.000	1.45	0.00	46.23	5.69
2175	3404	7.706281	ATCGACTTGCTATCAATCAGTAAAG	57.294	36.000	0.00	0.00	0.00	1.85
2180	3409	7.468922	TTGTAATCGACTTGCTATCAATCAG	57.531	36.000	0.00	0.00	0.00	2.90
2209	3438	7.622081	TGGACTTCCTTGTGAATAGTATCCTAA	59.378	37.037	0.00	0.00	36.82	2.69
2242	3471	1.595109	TGCGACTGCTGGTTCAGTG	60.595	57.895	0.72	0.00	46.40	3.66
2244	3473	1.595109	TGTGCGACTGCTGGTTCAG	60.595	57.895	0.00	0.00	43.34	3.02
2250	3479	1.632948	CTGATGGTGTGCGACTGCTG	61.633	60.000	0.00	0.00	43.34	4.41
2263	3492	1.884579	AGCTTGTTTGCACTCTGATGG	59.115	47.619	0.00	0.00	34.99	3.51
2274	3503	1.950630	GTGCCGCCAAGCTTGTTTG	60.951	57.895	24.35	13.25	0.00	2.93
2286	3515	1.279840	GCATATCTTTCCGTGCCGC	59.720	57.895	0.00	0.00	0.00	6.53
2293	3522	7.377766	TGCTAATAATTCGGCATATCTTTCC	57.622	36.000	0.00	0.00	0.00	3.13
2319	3548	1.000283	CGGTTAGGCATGCTAGGAGAG	60.000	57.143	18.92	0.45	0.00	3.20
2374	3603	5.067413	GGATCGTGACACCTATCTTAGTTGA	59.933	44.000	12.78	0.00	0.00	3.18
2377	3606	4.533815	TGGATCGTGACACCTATCTTAGT	58.466	43.478	12.78	0.00	0.00	2.24
2394	3623	2.093973	ACGTCACAACTCCAGATGGATC	60.094	50.000	1.15	0.00	44.46	3.36
2418	3647	2.110899	AGAGACCATCATCCTCCGGTAT	59.889	50.000	0.00	0.00	0.00	2.73
2419	3648	1.499438	AGAGACCATCATCCTCCGGTA	59.501	52.381	0.00	0.00	0.00	4.02
2422	3651	2.029470	GCTTAGAGACCATCATCCTCCG	60.029	54.545	0.00	0.00	0.00	4.63
2423	3652	2.968574	TGCTTAGAGACCATCATCCTCC	59.031	50.000	0.00	0.00	0.00	4.30
2428	3657	5.579753	ATGGATTGCTTAGAGACCATCAT	57.420	39.130	0.00	0.00	33.63	2.45
2443	3672	3.572632	AGTGGTGATGGAGATGGATTG	57.427	47.619	0.00	0.00	0.00	2.67
2463	3692	1.234615	GCACAACTTAGAGGGCGCAA	61.235	55.000	10.83	0.00	0.00	4.85
2487	3716	0.912486	GCCCTACATGAAGGAGTGGT	59.088	55.000	0.00	0.00	39.15	4.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.