>input_sequence_78028
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----------------------------------------------------ATGGGTCAAGCTGTCTCCGCCGCTTCTT
CCCCCTTCCGCCGCAAATCGCAGCCGCCGCCGGTTCCTCGGGCCACCGCCCCTCCAGCAGCAAAGGACCACGACACGGAG
CTCGTCCGCATCTTCCGCCGCTACGACACCGACGGGGACGGCCGCATCTCGGCCGCGGAGATACGCGAGATTTGGGGCTG
CACGGACGCGGAGGCGCAGGAGATGGTCGCCCAGGCGGACAGCGACGGGTACGGGTTGAACAGCATCGAGGAACTCGGGG
CGCTGCTGAAGGGCGGGGGCTCGGAGGACTTGCCGGCAGCGTTCGCGGAGTTTGACGAGAACGGCGACGGGGTGATCACC
CCCGATGAGCTGCGCCGAGCGTTTCTCCAGCCGCTGCTCGGCCGGGAGAAGCACACGATTGAGGAGTGCTCCAGGATGAT
CGCGGCGTTTGACCAAGACGGCGACGGCGTCCTCTCCTTCGACGAGTTCAAGGCCATGATGGCGCCCAAGAGCGCGTGA-
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>chr6D_1_TraesCS6D01G276100
AGTAGGCCTTTTCCTAGTAGTGGAAGAAGGACTAAACGGCAAGGCAAAGCGCGTCTTCAGCTTCTAGCACTAGTCAATGT
GTACGTGCAATGGACGTTAATTTGAAAGTATATTAAGTGCATGCGGATATTAAGTAGGATACTATTTGCATGTTATTATG
CGATTAGCACTATTTTTTGCATGAAATTAGCTGCACGCTAAACGTGTTGAGCGCTCGACATTGAAGCAGTCTAGATCATT
GGATTGACATGATTTGATGACCGAGATTAATTGGAT--------------------------------------------
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-------------------------------------------------------------CTGCCCCTTTGGATCTTTT
TATATTGGTATAGAT------ACAACATTGTTATCAAAACGTAAGACTTT-TTTGGTTTTGCATAGGGCATAAAAAACAT
CTTACATAATTCTTATGGAGGGAGTACATTATTTTCATAATTTCTTAGCCGTGATGCATACAGCATCGGTACTTTGTAAA
ATCAAGGGGTCCGATAAATCTCGAACGTCCGGATTTAAGCATGTCATCCCGAACATTTTTTCATGGCAAGTTTAGTTGAC
CCGAGGTGGCAAATTTAATTGTTAAAACATGACAACTTTGTACCAGTTC-GGGTTTTTTTTCCAGAAAATTGTCATGTTT
GTGAACCTCG--------CGTGAACTAAAGTTGTGATGAAAAACGTTCGGATTGCCATGCTTTAAAATTCAAACATTCGG
AATTTATCATTTTCAAAAATCAATCATCAATACGCTGCATATATTCCAAAAACAAAATCCACTACGTGCCTTTTAGAACA
---------------CGTTTGTGGCAGAGATGGACGCGGAAACAATATTTACCATGGTTCACAAACATGCAACGCGCATT
ATTTCCAATTTTGTTAACGCCGAAACCAAAAGTAATTGGTACTCGTAGGAGCCTCCG-CGATCCGAGCCCAAACCCACGC
GGTTGAGAGAGCCC----TATA------------------------------TCGACCAGAGCCCAAAACCCCACATCGC
-AACACACGGAAACGCACGCCGCACGGAACCCACCTAGCTCGATCGATCACCATGGGTCAAGCTGTCTCCGCCGCTTCTT
CCCCCTTCCGCCGCAAATCGCAGCCGCCGCCGGTTCCTCGGGCCACCGCCCCTCCAGCAGCAAAGGACCACGACACGGAG
CTCGTCCGCATCTTCCGCCGCTACGACACCGACGGGGACGGCCGCATCTCGGCCGCGGAGATACGCGAGATTTGGGGCTG
CACGGACGCGGAGGCGCAGGAGATGGTCGCCCAGGCGGACAGCGACGGGTACGGGTTGAACAGCATCGAGGAACTCGGGG
CGCTGCTGAAGGGCGGGGGCTCGGAGGACTTGCCGGCAGCGTTCGCGGAGTTTGACGAGAACGGCGACGGGGTGATCACC
CCCGATGAGCTGCGCCGAGCGTTTCTCCAGCCGCTGCTCGGCCGGGAGAAGCACACGATTGAGGAGTGCTCCAGGATGAT
CGCGGCGTTTGACCAAGACGGCGACGGCGTCCTCTCCTTCGACGAGTTCAAGGCCATGATGGCGCCCAAGAGCGCGTGAT
CCGTTCGCGCTGTGATCTGTCTATGCTTCTCCTTCGTTCATCGATGCTCGTAGTTACCGGCAAGTGTAAAGTGGGACCAG
TTTTTTACGTTACAAGTTGTAATGGGATTAGTTA----------------------------------------------
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-------------------------------------GTTTCTGGGCAGAACTTGAGAGGATGATCCGGGAATTTAATTC
CACCAAATGTTTCGATGTGATTTCCCTATGCAAACTCACCTA--GATATTCATATTGATCAATCTTGATCCAAGGAAGTT
ATCTTATACGATCGATCGCATTAGGAAGATATGAATCTCATAAG-AGAGGCGTTAGCGCCGACACATA--TTTTCTTTCT
GATTGTCTCGAATGTGAAGCAGTGGTATGTTAGAATGTATATCCTTTTATAGGTCTATACGTGTATGGCACTTGCGTTAG
CACAAGGAGTTTTAGGCTTCTAGCTCC-GGGGTGCAATCACACAATATGTACATGTTCGAGTGCTTCTAAATATTCATGG
CAAAAGAAGTC-TTTTCTACGTGAACTTTGAGAGCTTCTTTTT----AAATGGAACACCCACGATTTCATAAATCACACG
GGCTCAGTAATAATATTGGTCCGTACAAACATTTACATCATCAGCTAA--ATCTTCAGGCCAAACTTGGCCGTCATGGTG
TCCACGAGCACCAAATGCCGCTAATGCATGTGAACTTTGGGAGCTTTACTGATTGATAGCAAGTCGATTACAATCAGTTA
GGATACTATTCACAAGGAAGTCCAGGCTTTCACTGAACCAGCAGTCGCACACCATCAGAGTGCAAACAAGCTTGGCGGCA
CGGAAAGATATGCCGAATTATTAGCATCTCTCCTAGCATGCCTAACCGAAAAAGAGGCAAAACATGGAGATCTCTCCCTA
TTTCAACTAAGATAGGTGTCACGATCCATCTGGAGTTGTGACGTGTATACCGGAGGATGATGGTCTCTAAGCAATCCATC
TCCATCACCACTTGCGCCCTCTAAGTTGTGCAAAAACCACTCCTTCATGTAGGGC
>chr6D_23
----------------------GAAGAAGGACTAAACGGCAAGGCAAAGCGCGTCTTCAGCTTCTAGCACTAGTCAATGT
GTACGTGCAATGCACGTTAATTTGGAAGTATATTAAGTGCATGCAGATATTAAGTAGGATACTATTTGCGTGTTATTATG
TGATTAGCACTATTTTTGGAATGAAGTTAACTGCACGCTAAACGTGTTGAGCGCTCGACATTGAAGCAGTCTAGGTCATT
GGA-------GATTTGATGGCCGAGATTAATTGGATATGCCCCTTTGCAGTGGCGGAGCTTGGGCTGATTTTGTGGAGGG
GCAAATAGGCTAGAGGGGAAAGAAACATGACTTTAGGCTGAATTTTAACTGGCATATGGGCTGAATAGTAGGGAATATAT
GCTAGCTTTCTCATGGGCTGGGGGGGCAATGGCCCAGGTTGCTCTCCACTAAGCTCCGCCACTGCCCCTTTGGATCTTTT
TATTTTGGTATATATATGGATACAACCTTGTTACCAAAACGTAAGACTTTTTT-GGTTTTGCATAGGGCACAAAAAACAT
CTTACGTAATTATTATGGAGGGAGTACATTATTTTCAGAATTTCTTAGCCGTGATGCATACAGCATCGGTACTTTGTAAA
ATCAAGGGGCCTGATAAATCTTGAAAGTACGGATTTAAGCATGTCATCCCGAACATTTTTTCATGGCAAGTTTAGTTGAC
CCGAGGTGGCAAATTTAATTGTTAAAACATGGCAACTTTGTCCCAGTTC-GGG--TTTTTTCCAGAAAATTGTCATGTTT
GCCAACCTCG--------CGTGAACTAAAGTTGTGATGAAAAACGTTCGGATTGCCATGCTTTAAAATTCAAACGTTCGG
AATTTATCATTTTCAAAAATCAATCATCAATACGCTGCATATATTCCAAAAACAAAATCCACTACGTGCCTTTTAGAACA
---------------CGTTTGTGGCAGAGATGGACACGGAAACAA-ATTTACCATGGTTCACAAACATGCAACGCGCATT
AATTCCAATTTTGTCAACGCCGAAACCAAAAGTAATTGGTACTCGTAGGAGCCTCCG-CGATCCGAGCCCAAACCCACGC
GGTTGAGAGAGCCC----TATA------------------------------TCGACCAGAGCCCAAAACCCCAC-----
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>chr6A_306
TAGC----------------------------------------------------------------------------
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-------------------ATACAACCTTGTTACCAAAACGTAAGACTTTTTTTGGTTTTGCATAGGGCATAAAAAACAT
CTTACGTAATTATTATCGAGGGAGTACATTATTTTCAGAATTTCTTAGCCGTGATGCATACAGCATCGGTACTTTGTAAA
ATCAAGGGCCCCGATAAATCTCGAACGTCCGGATTTAAGCATGTCATTCCGAACGTTTTCTCATGGCAAGTTTAGTTGAC
CCGAGGTGGCAAATTTAGTTGTTAAAACATGGCAACTTTGTCCCAGTTT--GGTTTTTTTTTCAGAAAATTGTTATGTCT
GCCAACCTCG--------CGTGAACTAAAGTTGTCATGAAAAATGTTCGGATTGCCATGCTTTAAAATTCAAACATTCAG
GATTTATCATTTCCAAAAGTCAATCATCAATACGCTGCATATATTCCAAAAA--AAATCCACTACGCGTCTTTTTTTTTG
GAATTGTTTGGATTGCGTTTGTGGCAGAGATGGACGCGGAAACAATATTTACCATGGTTCACAAACATGCAACGCGCATT
CATTCCAATTTTGTTAACGCCGAAACCAAAAGTAATTGGTACTCGTAAGAGCCTCTCCCGATCCGAGCCCAAACCCACGC
GGTTGAGAGAGCCC----TATATATAAGACGGGCTTAAACCCTCTCCCCCAATCCACCAAAGCCCCAAACCCCA------
-------------------------------CACCTAGCTCGATCGATCACCATGGGTCAAGCCGTCTCCGCCGCTTCTT
CCCCCTTCCGCCGCAAATCGCAGCCGCCGCCGGTTCCTCTGGCTACCGCCCCTCCAGCAGCAAACGACCACGACACGGAG
CTCGTCCGCATCTTCCGCCGCTACGACACCGACGGGGACGGCCGCATCTCGGCCGCGGAGATACGCGAGATTTGGGGCTG
CACGGACGCGGAGGCGCAGGAGATGGTCGCCCAGGCGGACAGCGACGGGGACGGGTTGATCAGCATCGAGGAGCTCGGGG
CGCTGCTGAAGGGCGGGGGCTCGGAGGACTTGCCGGCGGCGTTCGCGAAGTTTGACGAGAACGGCGACGGGGTGATCACC
CCCGATGAGCTGCGCCGAGCGTTTCTCCAGCCGCTGCTCGGCCAGGAGAAGCACACGATTGAGGAGTGCTCCAGGATGAT
CGCGGCGTTTGACCAAGACGGCGACGGCGTCCTCTCCTTCGACGAGTTCAAGGCCATGATGGCGCCCAAGAGCGCGTGAT
CCGTTCGCACTGCGATCTGTCTATGCTTCTCCTTCGTTCATCGATGCGCGTAGTTACCGGCAAGTGTAAAGTGGGACCAG
TTTTTTACGTTACAAGTTGTAATGGGATTAGTTTTTTTTTTTGAGGGAAAAGCCTTATGGCATTTTATTCAATTTGGGAA
AGTGTTACATCAAAGATTACATGAGGTAATAAGAAAGAAGGCATCTAATCTAACCACTTTTCACATATTTTTGAATCATA
GCATCGCCTAGCTAGAAAGTGTGCAACTTTGTTTGCTTCTCCCGGACAATGAGCAAAAAAATATTCGGGATGTCATGGGC
GAGATGAAAACAATCAGCAAGGGTAGCTGAGTAGGGGCTTCAAATTTCTATCTCTCCATTACATGCATGTACCAGTTCTT
CACAGTCTGATTCTACTTTAACATTCCTGCACCCCACTGCATAAACCGGCCGTAGCCCCAAGCGAAGAGCAATTGCTTCA
GCTGATTGTGCACTAAGAGTGTTATCTATAAGCTCTGAGACCCCGGCAATCGCTTCTCCACGGCAATTACGAAGAACAGC
AGCTGCAGCCCCACTCCCGTCCTCGAAGAAGGACGCGTCCACATTCAGTTTGTACGACCCAAGAGCTGGATGTTGCCATC
GAGCTTCAGAAGTTACCGCAGCTGGACGTGTCGCGTGATTTGAAGTTATAGCTTGGATAGCAAACGAGGAACTTGGTGCA
GGTTTGACATTCACCCCCTTTACAGCTTCACGGCGTTCCCACCAGATGTACCATGCGCCAGCGGCAACCGTTTCCTGGAG
CCCCAGTTGTCCCAAGACAGGAGATTTTTTCACCGGATTTCTGAGTAACTCCTCCATTACCACTGAGCCCGAGCGATCAG
TGCGAATAGCTGCATCTATTATCTCATCCAAACCCAAGGACTTTCAAAACTGACGTGCACGAACACAAGTGAAAGCCAAA
TGACGAATATCCTCTGGTCCTTGGTGACATATAGGACATGAAGGTGAGACTTTGATATGTCTACTTCGCAATACTCATAT
AGGACATGAAGGTGAGACTTTGTAATGGGATTAGTTTGTTTCTGGCTAGAACTTGAGAGGATGATCCGGGAATTTAGTTC
CACCAAATGTTTCGATGTGATTTCCCTATGCAAACTCACCTAGTGATATTCATATTGATCAATCTTGTTCCAAGGAAGTT
ATCTTATACGATCGACCGCATTAGGAAGACATGAATCCGAGAAGCAGAGGCTTTAGCACTAACACATTTTTTTTCTTCCT
GATTTTCTCGAATGCGAAGTAGCGG-------------------------------------------------------
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>chr6B_420
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---------------------------------------------------TGATGCATACAACATTGGTACTTTGTAAA
ATCAAGGGCCCCGATAAA---------TCCGGATTTAAGCATGTCACCCCGAATGTTTTTTTATGGCTAGTTCAGTTGAC
CTGAGGTGGCAAATTTAGTTGTTAAAACATGG-AACTTTGTCCCAGTTCCGGG--TTTTCTTCAGAAAATTATCATGTTT
GCCAACCTCGCGTGAAGCCGTGAACTAAAGTTGTCATGAAAAACGTTTGGATTGCCATGCTTTCAAATTCAAACATTCAG
ATTTATCA--TTTCCAAAATCAATCATCAATACGCTGCATATATTCCAAAACCAAAATCCACTACGCGTC-TTTAGAACA
---------------CGTTTGTGGCAGAGATGGACGCGGAAACAATATTTACCATGGTTCACAAACATGCAACGCGCATT
CATTCCAATTTTGTTAACGCCGAAACCAAAAGTAATTGGTACTCGTAGGAGCCTCCGCCGATCCGAGCCCAACCCCACGC
GGTTGAGAGAGAGCCCTATATATCTAAGGCGGGCTTAAACCCTCTCCCGCAATCCACCAGAGCCCAAAACCCCACACCAC
AAACACACGGAAACGCACGCCGCACGGAACCCACCTAGCTCGATCGATCACCATGGGTCAAGCTGTCTCCGCCGCTTCTT
CCCCCTTCCGCCGCAAATCGCAGCCGCCGCCGGTTCCTCAGGCTACCGCCCCTCCAGCAGCAAAGGACCACGACACGGAG
CTCGTCCGCATCTTCCGCCGCTACGACACGGACGGGGACGGCCGCATCTCGGCCGCGGAGATACGCGAGATTTGGGGCTG
CACGGACGCGGAGGCGCAGGAGATGGTCGCCCAGGCGGACAGCGACGGGGACGGGTTGATCAGCATCGAGGAGCTCGGGG
CGCTGCTGAAGGGCGGGGGCTCGGAGGACTTGCCGGCGGCGTTCGCCAAGTTTGACGAGAACGGCGACGGGGTGATCACC
CCCGATGAGCTGCGCCGAGCGTTTCTCCAGCCGCTGCTCGGCCGGGAGAAGCACACGCTGGAGGAGTGCACCAGGATGGT
CGCCGCGTTTGACCAAGACGGCGACGGCGTCCTCTCCTTCGACGAGTTCAAGACCATGATGGCGCCCAAGAGTGCGTGAT
CTGTTCGCGTTGCGATCTGTCTATGCTTCTCCTTCGTTCATCGATGCGCGTAGTTACCGGCAAGTGTAAAGTTGGACCAG
TTTTTTACGTTACAAGTTGTAATGGGCTTAGTTA----------------------------------------------
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-------------------------------------GTTTCTGGCTAGAACTTGAGAGGATGATCCGGGAATTTAATTC
CACCAAATGTTTCGATGTGATTTCCCTATGCAAACTCACCTAGTGATATTCATATTGATCAATCTTGATCCAAGGAAGTT
ATCTTAAACGATCGATCGCATTAGGAAGATATGAATCTGATAAG-AGAGGCGTTAGCGCCGACACATA--TTTTCTTTCT
GATTTTCTCGAATGCAAAGCAGTGGTATGTTAGAATGTATATCTTTTTATAGGTCTACT--TGTATGGCACTTGCGTTAG
CACAAGGAGTTTTAGGCTTCTAGCTCCGGGGGTGCAATCACAACATATGTACGTGTTTGAGTGCTTCTAAATATTTGTGG
CAAAAGATTTTTTTTTTTACGTGAACTTTGGGAGCTATTTTGTTCTGAAATGAAACACCCACGATTCCATAAATCACACA
GGCTCAGTAACAGTATTGG-CCGTACGAACCTTTACATCATCAGGTAAATATCTTCATGCCAAACTTGGCCGTCATGGTG
ACCACGAGCACCAAAAGCCGCTAATGCATGTGAACTTTGGGAGTTTTATTGATTGATAGCAAGTCTATTACAATCAGCTA
GGATACTATTCACAAGGAAGTCCAGGCTTTTAATGAACTAGCAGTCGCACAACATCAGAGTGTAAACAAGCTTGACGGCA
CAGAAAGATATGCCGAATTATTAGCATGTCTCCTAGCATGCCTAACCGAAAAAGAGGCCAAACATGGAGATCTCTCCCTA
TTCCATCTAAGATAGGTGTCACAATCCATCTGGAGTTGTGACGTGTTGACTAGAGGTTGATGGTCTCTAAGGAATCCATC
TCCATCACCACATGCGCCCTCTAAGTTGTGCAAAA-CCACTCCTTCACGAAGGGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------------
------------S-----------S-------------------S------------------------S----------
S----------------S-S-----S---S--------------------------------------------S-----
---SSSSSSS---------S------------------------------------------------------------
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---S--------S-------------S------S----------------------------------------------
-----S-----S-------------------------S------------------------------------------
---------S----------------------------------------------------------------------
-------------------------------S---------S--------------------------------------
-SS-----------------------------------------------------------------------------
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-S------------------------------------------------------------------------------
----------------------------------------------------------------------------S-S-
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---------------------------------------S---S------------------------------------
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-------------------------------------------------S---------S------------S-------
-------------------------------------S---------S--------------------------------
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------------S----------------------------------S--------------------------------
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---------------------------------------------SS---------------------------------
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--------------------------------------S-----------------------------------------
----S---------S----------------------------S-------------SSSS-------------------
------------------------------------------SS--------S----S-----------------SS---
-------SS-S-----S-------------S-----SS---S----------S-------------S------------S
----------S-S------S------S---S-------------S------------S----------------------
S--------------S---------------------------S----S----------------S-----------S--
------------------------------S-S-----S------------S----------S-----------S-----
-S-------------------------S------------------------------S---------------------
--S--S----------------S-----------------------SS--SS----S--------------S--------
-----------S-----------------------S-----------S-S-----
>forward_1197
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---------------------------------------------------------CAGAGCCCAAAACCCCACAT---
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>reverse_3376
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---------------TGCCGCTAATGCATGTGAAC---------------------------------------------
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