Multiple sequence alignment - TraesCS6D01G273800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G273800 chr6D 100.000 2846 0 0 1 2846 382563196 382560351 0.000000e+00 5256
1 TraesCS6D01G273800 chr6A 90.066 2265 123 56 1 2209 524363901 524361683 0.000000e+00 2843
2 TraesCS6D01G273800 chr6B 87.542 2071 107 80 1 2013 572112839 572110862 0.000000e+00 2255
3 TraesCS6D01G273800 chr6B 94.221 398 21 2 2450 2846 683318811 683319207 8.720000e-170 606
4 TraesCS6D01G273800 chr6B 94.372 231 13 0 2207 2437 683318366 683318596 3.490000e-94 355
5 TraesCS6D01G273800 chr1D 96.530 634 20 1 2213 2846 192420832 192421463 0.000000e+00 1048
6 TraesCS6D01G273800 chr1D 88.253 647 59 10 2213 2846 34531990 34531348 0.000000e+00 758
7 TraesCS6D01G273800 chr7D 95.584 634 18 5 2213 2846 235450720 235451343 0.000000e+00 1007
8 TraesCS6D01G273800 chr4D 88.837 645 63 3 2211 2846 401644098 401644742 0.000000e+00 784
9 TraesCS6D01G273800 chr2D 91.506 518 35 3 2219 2727 391294480 391293963 0.000000e+00 704
10 TraesCS6D01G273800 chr2D 84.341 645 59 20 2213 2846 514348801 514349414 6.790000e-166 593
11 TraesCS6D01G273800 chr5D 91.313 518 36 3 2219 2727 254343912 254344429 0.000000e+00 699
12 TraesCS6D01G273800 chr3D 91.313 518 36 3 2219 2727 141459930 141459413 0.000000e+00 699
13 TraesCS6D01G273800 chr3D 86.233 523 58 10 2337 2846 21600181 21599660 3.200000e-154 555
14 TraesCS6D01G273800 chr1B 87.558 217 17 6 2379 2585 669884213 669884429 2.830000e-60 243
15 TraesCS6D01G273800 chr7B 87.442 215 17 6 2381 2585 587960040 587960254 3.660000e-59 239
16 TraesCS6D01G273800 chr4B 86.175 217 20 6 2379 2585 25450490 25450274 2.850000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G273800 chr6D 382560351 382563196 2845 True 5256.0 5256 100.0000 1 2846 1 chr6D.!!$R1 2845
1 TraesCS6D01G273800 chr6A 524361683 524363901 2218 True 2843.0 2843 90.0660 1 2209 1 chr6A.!!$R1 2208
2 TraesCS6D01G273800 chr6B 572110862 572112839 1977 True 2255.0 2255 87.5420 1 2013 1 chr6B.!!$R1 2012
3 TraesCS6D01G273800 chr6B 683318366 683319207 841 False 480.5 606 94.2965 2207 2846 2 chr6B.!!$F1 639
4 TraesCS6D01G273800 chr1D 192420832 192421463 631 False 1048.0 1048 96.5300 2213 2846 1 chr1D.!!$F1 633
5 TraesCS6D01G273800 chr1D 34531348 34531990 642 True 758.0 758 88.2530 2213 2846 1 chr1D.!!$R1 633
6 TraesCS6D01G273800 chr7D 235450720 235451343 623 False 1007.0 1007 95.5840 2213 2846 1 chr7D.!!$F1 633
7 TraesCS6D01G273800 chr4D 401644098 401644742 644 False 784.0 784 88.8370 2211 2846 1 chr4D.!!$F1 635
8 TraesCS6D01G273800 chr2D 391293963 391294480 517 True 704.0 704 91.5060 2219 2727 1 chr2D.!!$R1 508
9 TraesCS6D01G273800 chr2D 514348801 514349414 613 False 593.0 593 84.3410 2213 2846 1 chr2D.!!$F1 633
10 TraesCS6D01G273800 chr5D 254343912 254344429 517 False 699.0 699 91.3130 2219 2727 1 chr5D.!!$F1 508
11 TraesCS6D01G273800 chr3D 141459413 141459930 517 True 699.0 699 91.3130 2219 2727 1 chr3D.!!$R2 508
12 TraesCS6D01G273800 chr3D 21599660 21600181 521 True 555.0 555 86.2330 2337 2846 1 chr3D.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 440 0.460987 GCTATGCTGACACGCTCCTT 60.461 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2251 0.096976 CCGACATGACGTTTGATGGC 59.903 55.0 15.98 3.18 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.723870 CCGTTCTACGTACTCCCCG 59.276 63.158 0.00 0.00 40.58 5.73
63 64 0.973632 TTAGCGCCTCCTGTTCTGAA 59.026 50.000 2.29 0.00 0.00 3.02
161 162 3.753434 CAGAGAGAGCCGCGGTGT 61.753 66.667 28.70 15.17 0.00 4.16
170 171 1.142314 GCCGCGGTGTATCTGGTTA 59.858 57.895 28.70 0.00 0.00 2.85
173 174 2.348660 CCGCGGTGTATCTGGTTAAAA 58.651 47.619 19.50 0.00 0.00 1.52
181 182 6.311723 GGTGTATCTGGTTAAAAACATCGTG 58.688 40.000 0.00 0.00 0.00 4.35
236 237 2.859806 GCCATTGCGGAATGAATGTAGC 60.860 50.000 28.69 18.49 41.49 3.58
298 299 1.447314 GAAGTTACGCCGTGGGAGG 60.447 63.158 0.00 0.00 0.00 4.30
307 308 2.572284 CGTGGGAGGAGAACGGAC 59.428 66.667 0.00 0.00 33.77 4.79
308 309 2.979649 GTGGGAGGAGAACGGACC 59.020 66.667 0.00 0.00 0.00 4.46
381 382 2.430244 CGTAGAGCACGCCGTTGT 60.430 61.111 0.00 0.00 45.03 3.32
438 440 0.460987 GCTATGCTGACACGCTCCTT 60.461 55.000 0.00 0.00 0.00 3.36
484 486 4.410400 CTCCTTGTGTCCCGGGCC 62.410 72.222 18.49 4.39 0.00 5.80
646 652 1.214673 AGCTCCGTAGTCCATACCAGA 59.785 52.381 0.00 0.00 0.00 3.86
647 653 1.337387 GCTCCGTAGTCCATACCAGAC 59.663 57.143 0.00 0.00 34.31 3.51
648 654 1.955080 CTCCGTAGTCCATACCAGACC 59.045 57.143 0.00 0.00 34.67 3.85
871 878 2.359354 TCATCACAAACGGCCCCG 60.359 61.111 4.96 4.96 46.03 5.73
958 977 2.016704 GTGCACACACTCGAGACCG 61.017 63.158 21.68 9.53 43.85 4.79
959 978 2.190841 TGCACACACTCGAGACCGA 61.191 57.895 21.68 0.00 43.35 4.69
972 1005 2.202703 ACCGACGGTAGCATTCGC 60.203 61.111 20.23 0.00 32.11 4.70
991 1024 2.838225 GCCGGGGAGCTAGCAGTA 60.838 66.667 18.83 0.00 0.00 2.74
1137 1196 4.759096 ACGCACCGCCGTACGTAC 62.759 66.667 15.90 15.90 40.19 3.67
1186 1245 1.001048 TGGTCTGGTTAACGACGTGAG 60.001 52.381 0.00 0.00 0.00 3.51
1390 1449 4.388499 TCGCCTTCGGGTTCTGCC 62.388 66.667 0.00 0.00 37.45 4.85
1410 1475 1.929806 CTACACTCGCACCGCCAGTA 61.930 60.000 0.00 0.00 0.00 2.74
1411 1476 1.525718 TACACTCGCACCGCCAGTAA 61.526 55.000 0.00 0.00 0.00 2.24
1412 1477 1.447838 CACTCGCACCGCCAGTAAT 60.448 57.895 0.00 0.00 0.00 1.89
1413 1478 1.447838 ACTCGCACCGCCAGTAATG 60.448 57.895 0.00 0.00 0.00 1.90
1414 1479 1.447838 CTCGCACCGCCAGTAATGT 60.448 57.895 0.00 0.00 0.00 2.71
1415 1480 0.179121 CTCGCACCGCCAGTAATGTA 60.179 55.000 0.00 0.00 0.00 2.29
1416 1481 0.246910 TCGCACCGCCAGTAATGTAA 59.753 50.000 0.00 0.00 0.00 2.41
1436 1513 2.052782 TCACTCGCCATCTGCTAGTA 57.947 50.000 0.00 0.00 43.57 1.82
1438 1515 0.663688 ACTCGCCATCTGCTAGTACG 59.336 55.000 0.00 0.00 43.58 3.67
1439 1516 0.663688 CTCGCCATCTGCTAGTACGT 59.336 55.000 0.00 0.00 38.05 3.57
1440 1517 1.871676 CTCGCCATCTGCTAGTACGTA 59.128 52.381 0.00 0.00 38.05 3.57
1467 1547 1.242076 ACAGTGCTGTGCCATCTTTC 58.758 50.000 3.80 0.00 43.11 2.62
1540 1620 2.202440 CGCCTGGTACGTCGTCAG 60.202 66.667 0.00 3.95 0.00 3.51
1582 1665 2.972713 ACCGGTGCATCTATCCTTGTAT 59.027 45.455 6.12 0.00 0.00 2.29
1605 1689 0.035458 ACTGCTTTTCCTCTCGGTGG 59.965 55.000 0.00 0.00 0.00 4.61
1611 1695 3.851098 CTTTTCCTCTCGGTGGTTCTAG 58.149 50.000 0.00 0.00 0.00 2.43
1626 1710 7.518370 CGGTGGTTCTAGTTATGAATTATGTGC 60.518 40.741 0.00 0.00 0.00 4.57
1859 1946 0.808755 GCATGACCAAAACTACCGGG 59.191 55.000 6.32 0.00 0.00 5.73
1864 1951 2.224354 TGACCAAAACTACCGGGAACTC 60.224 50.000 6.32 0.00 0.00 3.01
1895 1982 1.732259 GAGTGCCAACAACTGTATCGG 59.268 52.381 0.00 0.00 0.00 4.18
1917 2004 1.811266 CAGTTCATCGGGCACTCGG 60.811 63.158 0.00 0.00 0.00 4.63
1921 2008 1.338973 GTTCATCGGGCACTCGGTATA 59.661 52.381 0.00 0.00 0.00 1.47
1942 2029 0.167908 TGAGCAATTTACCAAGCGCG 59.832 50.000 0.00 0.00 0.00 6.86
1952 2039 3.853330 CAAGCGCGGGATGACACG 61.853 66.667 8.83 0.00 46.60 4.49
2013 2108 4.040952 ACTCAGGACAATAGGGATACATGC 59.959 45.833 0.00 0.00 39.74 4.06
2051 2147 5.556915 TGATGGAAATACAGACGGACTTTT 58.443 37.500 0.00 0.00 0.00 2.27
2053 2149 7.162761 TGATGGAAATACAGACGGACTTTTTA 58.837 34.615 0.00 0.00 0.00 1.52
2055 2151 7.605410 TGGAAATACAGACGGACTTTTTATC 57.395 36.000 0.00 0.00 0.00 1.75
2056 2152 7.391620 TGGAAATACAGACGGACTTTTTATCT 58.608 34.615 0.00 0.00 0.00 1.98
2059 2156 8.713737 AAATACAGACGGACTTTTTATCTACC 57.286 34.615 0.00 0.00 0.00 3.18
2121 2218 7.756395 TCGGTCCTCGATATAGTTTTTAGAT 57.244 36.000 0.00 0.00 43.74 1.98
2123 2220 7.446319 TCGGTCCTCGATATAGTTTTTAGATCA 59.554 37.037 0.00 0.00 43.74 2.92
2129 2226 8.988064 TCGATATAGTTTTTAGATCATGAGGC 57.012 34.615 0.09 0.00 0.00 4.70
2130 2227 8.585018 TCGATATAGTTTTTAGATCATGAGGCA 58.415 33.333 0.09 0.00 0.00 4.75
2131 2228 9.376075 CGATATAGTTTTTAGATCATGAGGCAT 57.624 33.333 0.09 0.00 0.00 4.40
2135 2232 7.573968 AGTTTTTAGATCATGAGGCATTACC 57.426 36.000 0.09 0.00 39.61 2.85
2136 2233 6.547510 AGTTTTTAGATCATGAGGCATTACCC 59.452 38.462 0.09 0.00 40.58 3.69
2145 2242 1.819632 GGCATTACCCTCCACAGCG 60.820 63.158 0.00 0.00 0.00 5.18
2146 2243 2.472909 GCATTACCCTCCACAGCGC 61.473 63.158 0.00 0.00 0.00 5.92
2147 2244 1.819632 CATTACCCTCCACAGCGCC 60.820 63.158 2.29 0.00 0.00 6.53
2148 2245 3.385749 ATTACCCTCCACAGCGCCG 62.386 63.158 2.29 0.00 0.00 6.46
2164 2261 2.096406 CGCACGAGCCATCAAACG 59.904 61.111 0.00 0.00 37.52 3.60
2178 2275 1.862201 TCAAACGTCATGTCGGACAAC 59.138 47.619 15.72 8.82 37.66 3.32
2181 2278 0.320374 ACGTCATGTCGGACAACCAT 59.680 50.000 15.72 0.00 37.66 3.55
2183 2280 1.808411 GTCATGTCGGACAACCATGT 58.192 50.000 15.72 0.00 44.25 3.21
2195 2292 2.884012 ACAACCATGTTTCTCGCATCAA 59.116 40.909 0.00 0.00 35.91 2.57
2196 2293 3.236816 CAACCATGTTTCTCGCATCAAC 58.763 45.455 0.00 0.00 0.00 3.18
2197 2294 1.812571 ACCATGTTTCTCGCATCAACC 59.187 47.619 0.00 0.00 0.00 3.77
2198 2295 2.086869 CCATGTTTCTCGCATCAACCT 58.913 47.619 0.00 0.00 0.00 3.50
2199 2296 2.489329 CCATGTTTCTCGCATCAACCTT 59.511 45.455 0.00 0.00 0.00 3.50
2200 2297 3.495193 CATGTTTCTCGCATCAACCTTG 58.505 45.455 0.00 0.00 0.00 3.61
2201 2298 2.844946 TGTTTCTCGCATCAACCTTGA 58.155 42.857 0.00 0.00 42.14 3.02
2202 2299 3.210227 TGTTTCTCGCATCAACCTTGAA 58.790 40.909 0.00 0.00 41.13 2.69
2203 2300 3.820467 TGTTTCTCGCATCAACCTTGAAT 59.180 39.130 0.00 0.00 41.13 2.57
2204 2301 4.083324 TGTTTCTCGCATCAACCTTGAATC 60.083 41.667 0.00 0.00 41.13 2.52
2205 2302 2.632377 TCTCGCATCAACCTTGAATCC 58.368 47.619 0.00 0.00 41.13 3.01
2216 2313 8.739039 CATCAACCTTGAATCCATGTAAACTAA 58.261 33.333 0.00 0.00 41.13 2.24
2234 2331 0.889186 AAGAGAATGCCCGTGCGTTT 60.889 50.000 0.00 0.00 46.55 3.60
2235 2332 1.154225 GAGAATGCCCGTGCGTTTG 60.154 57.895 0.00 0.00 46.55 2.93
2260 2357 2.229792 GGCAAAAGCCGGATGATCATA 58.770 47.619 8.54 0.00 0.00 2.15
2493 2798 3.604582 TCAATTCACACGTCCATGCATA 58.395 40.909 0.00 0.00 0.00 3.14
2743 3052 3.669939 AGCAATAGGTTTGTAGCCCAT 57.330 42.857 0.00 0.00 0.00 4.00
2804 3116 2.168728 GAGAAAAGGTCCGCAGATAGGT 59.831 50.000 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 7.908827 TTAGCACGATGTTTTTAACCAGATA 57.091 32.000 0.00 0.00 0.00 1.98
170 171 6.364976 GCCTTAACAATTAGCACGATGTTTTT 59.635 34.615 0.00 0.00 37.25 1.94
173 174 4.436852 CGCCTTAACAATTAGCACGATGTT 60.437 41.667 0.00 0.00 39.23 2.71
181 182 3.861689 ACGTAGACGCCTTAACAATTAGC 59.138 43.478 1.14 0.00 44.43 3.09
224 225 5.119279 CCTATACTGCGTGCTACATTCATTC 59.881 44.000 0.00 0.00 0.00 2.67
225 226 4.991056 CCTATACTGCGTGCTACATTCATT 59.009 41.667 0.00 0.00 0.00 2.57
226 227 4.039245 ACCTATACTGCGTGCTACATTCAT 59.961 41.667 0.00 0.00 0.00 2.57
227 228 3.383505 ACCTATACTGCGTGCTACATTCA 59.616 43.478 0.00 0.00 0.00 2.57
236 237 1.862815 GCACGGTACCTATACTGCGTG 60.863 57.143 10.90 11.07 43.79 5.34
270 271 1.405661 GGCGTAACTTCTCCCCTCTTG 60.406 57.143 0.00 0.00 0.00 3.02
350 351 4.077184 TACGGCGCTTCTGGGTGG 62.077 66.667 6.90 0.00 0.00 4.61
381 382 1.303561 GCAGGTGAGAACATGGCCA 60.304 57.895 8.56 8.56 0.00 5.36
438 440 1.982395 CCAGGGACGCACAGGACTA 60.982 63.158 0.00 0.00 0.00 2.59
484 486 5.010749 CGCAAAAGCATCAAATCAAATTCG 58.989 37.500 0.00 0.00 0.00 3.34
635 641 0.981183 TGTGGTGGTCTGGTATGGAC 59.019 55.000 0.00 0.00 0.00 4.02
646 652 0.323629 CTACGGGACAATGTGGTGGT 59.676 55.000 0.00 0.00 0.00 4.16
647 653 0.392461 CCTACGGGACAATGTGGTGG 60.392 60.000 0.00 0.00 33.58 4.61
648 654 0.611200 TCCTACGGGACAATGTGGTG 59.389 55.000 0.00 0.00 36.57 4.17
724 730 2.515523 CATGGGCCAGCTTCGGAG 60.516 66.667 13.78 0.00 0.00 4.63
958 977 3.627218 GCCGCGAATGCTACCGTC 61.627 66.667 8.23 0.00 39.65 4.79
991 1024 2.591753 CACGGCCATGGATCCACT 59.408 61.111 18.99 3.52 0.00 4.00
1137 1196 0.318360 TGTCGCACACAAGGACGTAG 60.318 55.000 0.00 0.00 33.45 3.51
1186 1245 2.730672 GATCTGCACACCGCGTCAC 61.731 63.158 4.92 0.00 46.97 3.67
1187 1246 1.591504 TAGATCTGCACACCGCGTCA 61.592 55.000 5.18 0.00 46.97 4.35
1188 1247 0.867753 CTAGATCTGCACACCGCGTC 60.868 60.000 5.18 0.00 46.97 5.19
1189 1248 1.139734 CTAGATCTGCACACCGCGT 59.860 57.895 5.18 0.00 46.97 6.01
1281 1340 4.371417 ACGTGGAGTAGGGCGGGA 62.371 66.667 0.00 0.00 0.00 5.14
1390 1449 3.989698 CTGGCGGTGCGAGTGTAGG 62.990 68.421 0.00 0.00 29.93 3.18
1410 1475 2.874701 GCAGATGGCGAGTGATTACATT 59.125 45.455 0.00 0.00 0.00 2.71
1411 1476 2.487934 GCAGATGGCGAGTGATTACAT 58.512 47.619 0.00 0.00 0.00 2.29
1412 1477 1.939974 GCAGATGGCGAGTGATTACA 58.060 50.000 0.00 0.00 0.00 2.41
1436 1513 2.621998 ACAGCACTGTGAGTTACTACGT 59.378 45.455 12.86 0.00 43.11 3.57
1467 1547 1.093159 GAGGCTGCAGATGTTCAAGG 58.907 55.000 20.43 0.00 0.00 3.61
1540 1620 0.097674 CGTGCAGAACTAGCATTGGC 59.902 55.000 0.00 0.00 44.79 4.52
1605 1689 8.354011 ACGAGCACATAATTCATAACTAGAAC 57.646 34.615 0.00 0.00 0.00 3.01
1611 1695 5.904080 GCAAGACGAGCACATAATTCATAAC 59.096 40.000 0.00 0.00 0.00 1.89
1626 1710 1.098869 TCCTCTGCTAGCAAGACGAG 58.901 55.000 19.86 19.77 0.00 4.18
1723 1807 1.672356 GTCCAACTCCATGCACGCT 60.672 57.895 0.00 0.00 0.00 5.07
1725 1809 1.300971 CCTGTCCAACTCCATGCACG 61.301 60.000 0.00 0.00 0.00 5.34
1859 1946 3.368236 GGCACTCAGTACAATTCGAGTTC 59.632 47.826 0.00 0.00 36.60 3.01
1864 1951 2.805671 TGTTGGCACTCAGTACAATTCG 59.194 45.455 0.00 0.00 0.00 3.34
1895 1982 2.359850 TGCCCGATGAACTGCACC 60.360 61.111 0.00 0.00 0.00 5.01
1917 2004 5.738370 CGCTTGGTAAATTGCTCACTATAC 58.262 41.667 0.00 0.00 0.00 1.47
1921 2008 1.200020 GCGCTTGGTAAATTGCTCACT 59.800 47.619 0.00 0.00 0.00 3.41
1924 2011 0.523335 CCGCGCTTGGTAAATTGCTC 60.523 55.000 5.56 0.00 0.00 4.26
1952 2039 1.206523 GCCTACGGAAATACACGAGC 58.793 55.000 0.00 0.00 0.00 5.03
2059 2156 8.339714 TCGAACACTTAAGATTTAAACCACTTG 58.660 33.333 10.09 0.00 0.00 3.16
2121 2218 1.490490 GTGGAGGGTAATGCCTCATGA 59.510 52.381 0.00 0.00 37.43 3.07
2123 2220 1.492176 CTGTGGAGGGTAATGCCTCAT 59.508 52.381 0.00 0.00 37.43 2.90
2127 2224 1.819632 CGCTGTGGAGGGTAATGCC 60.820 63.158 0.00 0.00 0.00 4.40
2129 2226 1.819632 GGCGCTGTGGAGGGTAATG 60.820 63.158 7.64 0.00 34.59 1.90
2130 2227 2.590092 GGCGCTGTGGAGGGTAAT 59.410 61.111 7.64 0.00 34.59 1.89
2131 2228 4.077184 CGGCGCTGTGGAGGGTAA 62.077 66.667 8.45 0.00 34.59 2.85
2145 2242 3.430862 TTTGATGGCTCGTGCGGC 61.431 61.111 3.02 0.00 40.82 6.53
2146 2243 2.480555 GTTTGATGGCTCGTGCGG 59.519 61.111 3.02 0.00 40.82 5.69
2147 2244 2.096406 CGTTTGATGGCTCGTGCG 59.904 61.111 3.02 0.00 40.82 5.34
2148 2245 1.132640 GACGTTTGATGGCTCGTGC 59.867 57.895 0.00 0.00 36.67 5.34
2149 2246 1.078709 ATGACGTTTGATGGCTCGTG 58.921 50.000 0.00 0.00 36.67 4.35
2150 2247 1.078709 CATGACGTTTGATGGCTCGT 58.921 50.000 0.00 0.00 39.21 4.18
2151 2248 1.061131 GACATGACGTTTGATGGCTCG 59.939 52.381 0.00 0.00 0.00 5.03
2152 2249 1.061131 CGACATGACGTTTGATGGCTC 59.939 52.381 9.46 0.00 0.00 4.70
2153 2250 1.078709 CGACATGACGTTTGATGGCT 58.921 50.000 9.46 0.00 0.00 4.75
2154 2251 0.096976 CCGACATGACGTTTGATGGC 59.903 55.000 15.98 3.18 0.00 4.40
2164 2261 1.808411 ACATGGTTGTCCGACATGAC 58.192 50.000 10.47 0.00 43.46 3.06
2178 2275 2.086869 AGGTTGATGCGAGAAACATGG 58.913 47.619 0.00 0.00 0.00 3.66
2181 2278 2.844946 TCAAGGTTGATGCGAGAAACA 58.155 42.857 0.00 0.00 31.01 2.83
2183 2280 3.440173 GGATTCAAGGTTGATGCGAGAAA 59.560 43.478 0.00 0.00 37.00 2.52
2195 2292 7.918076 TCTCTTAGTTTACATGGATTCAAGGT 58.082 34.615 0.00 0.00 0.00 3.50
2196 2293 8.792830 TTCTCTTAGTTTACATGGATTCAAGG 57.207 34.615 0.00 0.00 0.00 3.61
2198 2295 8.677300 GCATTCTCTTAGTTTACATGGATTCAA 58.323 33.333 0.00 0.00 0.00 2.69
2199 2296 7.283127 GGCATTCTCTTAGTTTACATGGATTCA 59.717 37.037 0.00 0.00 0.00 2.57
2200 2297 7.255277 GGGCATTCTCTTAGTTTACATGGATTC 60.255 40.741 0.00 0.00 0.00 2.52
2201 2298 6.547510 GGGCATTCTCTTAGTTTACATGGATT 59.452 38.462 0.00 0.00 0.00 3.01
2202 2299 6.064717 GGGCATTCTCTTAGTTTACATGGAT 58.935 40.000 0.00 0.00 0.00 3.41
2203 2300 5.437060 GGGCATTCTCTTAGTTTACATGGA 58.563 41.667 0.00 0.00 0.00 3.41
2204 2301 4.273480 CGGGCATTCTCTTAGTTTACATGG 59.727 45.833 0.00 0.00 0.00 3.66
2205 2302 4.876107 ACGGGCATTCTCTTAGTTTACATG 59.124 41.667 0.00 0.00 0.00 3.21
2216 2313 1.302511 AAACGCACGGGCATTCTCT 60.303 52.632 11.77 0.00 41.24 3.10
2493 2798 9.569122 AGTTTTTGTGTACCTTGTAATAGTGAT 57.431 29.630 0.00 0.00 0.00 3.06
2722 3030 3.449746 TGGGCTACAAACCTATTGCTT 57.550 42.857 0.00 0.00 0.00 3.91
2743 3052 2.851263 AAGTACAAACCGATGCCAGA 57.149 45.000 0.00 0.00 0.00 3.86
2804 3116 4.452825 TGTGACAATCGGTTCCTTTTGTA 58.547 39.130 6.36 0.00 32.73 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.