Multiple sequence alignment - TraesCS6D01G268900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G268900 chr6D 100.000 2213 0 0 1 2213 379334741 379332529 0.000000e+00 4087
1 TraesCS6D01G268900 chr6D 78.903 237 40 7 1015 1246 379339126 379339357 3.810000e-33 152
2 TraesCS6D01G268900 chr6A 92.193 1678 85 21 42 1698 521880456 521882108 0.000000e+00 2331
3 TraesCS6D01G268900 chr6A 91.915 1546 79 18 276 1803 521857856 521859373 0.000000e+00 2121
4 TraesCS6D01G268900 chr6A 88.793 348 19 7 41 388 521857536 521857863 2.050000e-110 409
5 TraesCS6D01G268900 chr6A 78.059 237 42 7 1015 1246 521648900 521648669 8.240000e-30 141
6 TraesCS6D01G268900 chr6B 96.607 1120 28 1 105 1214 567710786 567711905 0.000000e+00 1849
7 TraesCS6D01G268900 chr6B 91.595 583 36 10 1207 1789 567712489 567713058 0.000000e+00 793
8 TraesCS6D01G268900 chr6B 79.325 237 39 7 1015 1246 567611657 567611426 8.180000e-35 158
9 TraesCS6D01G268900 chr6B 79.310 203 35 6 1015 1215 213467273 213467076 3.830000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G268900 chr6D 379332529 379334741 2212 True 4087 4087 100.000 1 2213 1 chr6D.!!$R1 2212
1 TraesCS6D01G268900 chr6A 521880456 521882108 1652 False 2331 2331 92.193 42 1698 1 chr6A.!!$F1 1656
2 TraesCS6D01G268900 chr6A 521857536 521859373 1837 False 1265 2121 90.354 41 1803 2 chr6A.!!$F2 1762
3 TraesCS6D01G268900 chr6B 567710786 567713058 2272 False 1321 1849 94.101 105 1789 2 chr6B.!!$F1 1684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1092 0.802607 GTGGTCGATCGAGTGGAAGC 60.803 60.0 20.09 6.26 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 2801 0.035317 TGAAATCTGTGAGCCGCAGT 59.965 50.0 13.25 2.07 41.99 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.929819 TTTTCCAACCTAAACTCCAAGC 57.070 40.909 0.00 0.00 0.00 4.01
23 24 3.586470 TTCCAACCTAAACTCCAAGCA 57.414 42.857 0.00 0.00 0.00 3.91
24 25 3.586470 TCCAACCTAAACTCCAAGCAA 57.414 42.857 0.00 0.00 0.00 3.91
25 26 3.904717 TCCAACCTAAACTCCAAGCAAA 58.095 40.909 0.00 0.00 0.00 3.68
26 27 3.888930 TCCAACCTAAACTCCAAGCAAAG 59.111 43.478 0.00 0.00 0.00 2.77
27 28 3.888930 CCAACCTAAACTCCAAGCAAAGA 59.111 43.478 0.00 0.00 0.00 2.52
28 29 4.022849 CCAACCTAAACTCCAAGCAAAGAG 60.023 45.833 0.00 0.00 36.16 2.85
29 30 4.706842 ACCTAAACTCCAAGCAAAGAGA 57.293 40.909 4.16 0.00 34.13 3.10
30 31 4.390264 ACCTAAACTCCAAGCAAAGAGAC 58.610 43.478 4.16 0.00 34.13 3.36
31 32 3.753797 CCTAAACTCCAAGCAAAGAGACC 59.246 47.826 4.16 0.00 34.13 3.85
32 33 3.584733 AAACTCCAAGCAAAGAGACCT 57.415 42.857 4.16 0.00 34.13 3.85
33 34 2.557920 ACTCCAAGCAAAGAGACCTG 57.442 50.000 4.16 0.00 34.13 4.00
34 35 1.771255 ACTCCAAGCAAAGAGACCTGT 59.229 47.619 4.16 0.00 34.13 4.00
35 36 2.972713 ACTCCAAGCAAAGAGACCTGTA 59.027 45.455 4.16 0.00 34.13 2.74
36 37 3.584848 ACTCCAAGCAAAGAGACCTGTAT 59.415 43.478 4.16 0.00 34.13 2.29
37 38 4.187694 CTCCAAGCAAAGAGACCTGTATC 58.812 47.826 0.00 0.00 31.43 2.24
38 39 2.932614 CCAAGCAAAGAGACCTGTATCG 59.067 50.000 0.00 0.00 0.00 2.92
39 40 3.589988 CAAGCAAAGAGACCTGTATCGT 58.410 45.455 0.00 0.00 0.00 3.73
47 48 6.388435 AAGAGACCTGTATCGTATAACACC 57.612 41.667 0.00 0.00 0.00 4.16
59 60 3.692101 CGTATAACACCCTGCATCCAAAA 59.308 43.478 0.00 0.00 0.00 2.44
77 78 3.467374 AAACCATTCCGTTTGTGCAAT 57.533 38.095 0.00 0.00 34.68 3.56
82 83 3.919804 CCATTCCGTTTGTGCAATTACAG 59.080 43.478 0.00 0.00 0.00 2.74
88 89 4.472286 CGTTTGTGCAATTACAGTTAGGG 58.528 43.478 0.00 0.00 0.00 3.53
89 90 4.214545 CGTTTGTGCAATTACAGTTAGGGA 59.785 41.667 0.00 0.00 0.00 4.20
93 94 5.626142 TGTGCAATTACAGTTAGGGAGAAA 58.374 37.500 0.00 0.00 0.00 2.52
94 95 5.705441 TGTGCAATTACAGTTAGGGAGAAAG 59.295 40.000 0.00 0.00 0.00 2.62
97 98 6.430000 TGCAATTACAGTTAGGGAGAAAGAAC 59.570 38.462 0.00 0.00 0.00 3.01
99 100 7.040686 GCAATTACAGTTAGGGAGAAAGAACAA 60.041 37.037 0.00 0.00 0.00 2.83
100 101 7.981102 ATTACAGTTAGGGAGAAAGAACAAC 57.019 36.000 0.00 0.00 0.00 3.32
101 102 4.715713 ACAGTTAGGGAGAAAGAACAACC 58.284 43.478 0.00 0.00 0.00 3.77
102 103 4.165372 ACAGTTAGGGAGAAAGAACAACCA 59.835 41.667 0.00 0.00 0.00 3.67
103 104 5.130350 CAGTTAGGGAGAAAGAACAACCAA 58.870 41.667 0.00 0.00 0.00 3.67
109 110 4.390264 GGAGAAAGAACAACCAAGTAGCT 58.610 43.478 0.00 0.00 0.00 3.32
113 114 0.881796 GAACAACCAAGTAGCTGGGC 59.118 55.000 0.00 0.00 41.16 5.36
574 683 4.347453 GGCGTTGTGCTTGGCCTG 62.347 66.667 3.32 0.00 45.43 4.85
973 1092 0.802607 GTGGTCGATCGAGTGGAAGC 60.803 60.000 20.09 6.26 0.00 3.86
1325 2041 2.039624 GGCAGTGGAGGAGGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
1486 2211 4.087892 CGTCCCAGGCTCACAGGG 62.088 72.222 1.15 1.15 44.22 4.45
1487 2212 3.721706 GTCCCAGGCTCACAGGGG 61.722 72.222 7.72 4.21 43.03 4.79
1495 2220 3.775654 CTCACAGGGGAGGCGGAC 61.776 72.222 0.00 0.00 0.00 4.79
1561 2294 5.185442 TGGAATAATTTGCAATGCTGTCTCA 59.815 36.000 6.82 0.00 29.34 3.27
1609 2342 3.152261 GCACGTAGCTGACTACTTGAT 57.848 47.619 12.32 0.00 46.42 2.57
1663 2396 2.561885 CGAACGACGTGCTCTCCT 59.438 61.111 0.00 0.00 37.22 3.69
1734 2468 2.550606 GGATCGACTAGCTGGAGTACTG 59.449 54.545 3.17 0.00 0.00 2.74
1735 2469 2.783609 TCGACTAGCTGGAGTACTGT 57.216 50.000 3.17 0.00 0.00 3.55
1767 2501 5.804692 ACATATCTAATCTAGCGTCTCCG 57.195 43.478 0.00 0.00 37.07 4.63
1770 2504 0.110147 CTAATCTAGCGTCTCCGGCG 60.110 60.000 0.00 0.00 35.00 6.46
1792 2526 2.289819 ACGTCTCTCCGTTCTTCTCTCT 60.290 50.000 0.00 0.00 37.96 3.10
1793 2527 2.350498 CGTCTCTCCGTTCTTCTCTCTC 59.650 54.545 0.00 0.00 0.00 3.20
1799 2533 0.247894 CGTTCTTCTCTCTCGCCTCG 60.248 60.000 0.00 0.00 0.00 4.63
1803 2537 0.525242 CTTCTCTCTCGCCTCGCTTG 60.525 60.000 0.00 0.00 0.00 4.01
1804 2538 2.549611 TTCTCTCTCGCCTCGCTTGC 62.550 60.000 0.00 0.00 0.00 4.01
1805 2539 3.348055 CTCTCTCGCCTCGCTTGCA 62.348 63.158 0.00 0.00 0.00 4.08
1806 2540 2.202851 CTCTCGCCTCGCTTGCAT 60.203 61.111 0.00 0.00 0.00 3.96
1807 2541 1.812922 CTCTCGCCTCGCTTGCATT 60.813 57.895 0.00 0.00 0.00 3.56
1808 2542 0.528466 CTCTCGCCTCGCTTGCATTA 60.528 55.000 0.00 0.00 0.00 1.90
1809 2543 0.104855 TCTCGCCTCGCTTGCATTAT 59.895 50.000 0.00 0.00 0.00 1.28
1810 2544 0.510359 CTCGCCTCGCTTGCATTATC 59.490 55.000 0.00 0.00 0.00 1.75
1811 2545 1.202568 CGCCTCGCTTGCATTATCG 59.797 57.895 0.00 0.00 0.00 2.92
1812 2546 1.215014 CGCCTCGCTTGCATTATCGA 61.215 55.000 0.00 0.00 0.00 3.59
1813 2547 0.233332 GCCTCGCTTGCATTATCGAC 59.767 55.000 0.00 0.00 0.00 4.20
1814 2548 0.861837 CCTCGCTTGCATTATCGACC 59.138 55.000 0.00 0.00 0.00 4.79
1815 2549 1.570813 CTCGCTTGCATTATCGACCA 58.429 50.000 0.00 0.00 0.00 4.02
1816 2550 2.138320 CTCGCTTGCATTATCGACCAT 58.862 47.619 0.00 0.00 0.00 3.55
1817 2551 2.135139 TCGCTTGCATTATCGACCATC 58.865 47.619 0.00 0.00 0.00 3.51
1818 2552 2.138320 CGCTTGCATTATCGACCATCT 58.862 47.619 0.00 0.00 0.00 2.90
1819 2553 2.156504 CGCTTGCATTATCGACCATCTC 59.843 50.000 0.00 0.00 0.00 2.75
1820 2554 3.397482 GCTTGCATTATCGACCATCTCT 58.603 45.455 0.00 0.00 0.00 3.10
1821 2555 3.431572 GCTTGCATTATCGACCATCTCTC 59.568 47.826 0.00 0.00 0.00 3.20
1822 2556 3.667497 TGCATTATCGACCATCTCTCC 57.333 47.619 0.00 0.00 0.00 3.71
1823 2557 3.234353 TGCATTATCGACCATCTCTCCT 58.766 45.455 0.00 0.00 0.00 3.69
1824 2558 3.256879 TGCATTATCGACCATCTCTCCTC 59.743 47.826 0.00 0.00 0.00 3.71
1825 2559 3.256879 GCATTATCGACCATCTCTCCTCA 59.743 47.826 0.00 0.00 0.00 3.86
1826 2560 4.804108 CATTATCGACCATCTCTCCTCAC 58.196 47.826 0.00 0.00 0.00 3.51
1827 2561 2.443958 ATCGACCATCTCTCCTCACA 57.556 50.000 0.00 0.00 0.00 3.58
1828 2562 2.443958 TCGACCATCTCTCCTCACAT 57.556 50.000 0.00 0.00 0.00 3.21
1829 2563 2.302260 TCGACCATCTCTCCTCACATC 58.698 52.381 0.00 0.00 0.00 3.06
1830 2564 2.027385 CGACCATCTCTCCTCACATCA 58.973 52.381 0.00 0.00 0.00 3.07
1831 2565 2.223688 CGACCATCTCTCCTCACATCAC 60.224 54.545 0.00 0.00 0.00 3.06
1832 2566 3.030291 GACCATCTCTCCTCACATCACT 58.970 50.000 0.00 0.00 0.00 3.41
1833 2567 3.030291 ACCATCTCTCCTCACATCACTC 58.970 50.000 0.00 0.00 0.00 3.51
1834 2568 2.364970 CCATCTCTCCTCACATCACTCC 59.635 54.545 0.00 0.00 0.00 3.85
1835 2569 2.151502 TCTCTCCTCACATCACTCCC 57.848 55.000 0.00 0.00 0.00 4.30
1836 2570 0.743688 CTCTCCTCACATCACTCCCG 59.256 60.000 0.00 0.00 0.00 5.14
1837 2571 1.142748 CTCCTCACATCACTCCCGC 59.857 63.158 0.00 0.00 0.00 6.13
1838 2572 2.187946 CCTCACATCACTCCCGCC 59.812 66.667 0.00 0.00 0.00 6.13
1839 2573 2.362369 CCTCACATCACTCCCGCCT 61.362 63.158 0.00 0.00 0.00 5.52
1840 2574 1.142748 CTCACATCACTCCCGCCTC 59.857 63.158 0.00 0.00 0.00 4.70
1841 2575 2.202797 CACATCACTCCCGCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
1842 2576 4.148825 ACATCACTCCCGCCTCGC 62.149 66.667 0.00 0.00 0.00 5.03
1843 2577 3.842923 CATCACTCCCGCCTCGCT 61.843 66.667 0.00 0.00 0.00 4.93
1844 2578 3.532155 ATCACTCCCGCCTCGCTC 61.532 66.667 0.00 0.00 0.00 5.03
1845 2579 4.742649 TCACTCCCGCCTCGCTCT 62.743 66.667 0.00 0.00 0.00 4.09
1846 2580 3.764466 CACTCCCGCCTCGCTCTT 61.764 66.667 0.00 0.00 0.00 2.85
1847 2581 2.997897 ACTCCCGCCTCGCTCTTT 60.998 61.111 0.00 0.00 0.00 2.52
1848 2582 2.202810 CTCCCGCCTCGCTCTTTC 60.203 66.667 0.00 0.00 0.00 2.62
1849 2583 2.680352 TCCCGCCTCGCTCTTTCT 60.680 61.111 0.00 0.00 0.00 2.52
1850 2584 2.202810 CCCGCCTCGCTCTTTCTC 60.203 66.667 0.00 0.00 0.00 2.87
1851 2585 2.202810 CCGCCTCGCTCTTTCTCC 60.203 66.667 0.00 0.00 0.00 3.71
1852 2586 2.716017 CCGCCTCGCTCTTTCTCCT 61.716 63.158 0.00 0.00 0.00 3.69
1853 2587 1.518133 CGCCTCGCTCTTTCTCCTG 60.518 63.158 0.00 0.00 0.00 3.86
1854 2588 1.594310 GCCTCGCTCTTTCTCCTGT 59.406 57.895 0.00 0.00 0.00 4.00
1855 2589 0.036858 GCCTCGCTCTTTCTCCTGTT 60.037 55.000 0.00 0.00 0.00 3.16
1856 2590 2.003196 CCTCGCTCTTTCTCCTGTTC 57.997 55.000 0.00 0.00 0.00 3.18
1857 2591 1.404851 CCTCGCTCTTTCTCCTGTTCC 60.405 57.143 0.00 0.00 0.00 3.62
1858 2592 0.608640 TCGCTCTTTCTCCTGTTCCC 59.391 55.000 0.00 0.00 0.00 3.97
1859 2593 0.610687 CGCTCTTTCTCCTGTTCCCT 59.389 55.000 0.00 0.00 0.00 4.20
1860 2594 1.404851 CGCTCTTTCTCCTGTTCCCTC 60.405 57.143 0.00 0.00 0.00 4.30
1861 2595 1.065782 GCTCTTTCTCCTGTTCCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
1862 2596 2.260822 CTCTTTCTCCTGTTCCCTCCA 58.739 52.381 0.00 0.00 0.00 3.86
1863 2597 2.843113 CTCTTTCTCCTGTTCCCTCCAT 59.157 50.000 0.00 0.00 0.00 3.41
1864 2598 3.260205 TCTTTCTCCTGTTCCCTCCATT 58.740 45.455 0.00 0.00 0.00 3.16
1865 2599 3.264450 TCTTTCTCCTGTTCCCTCCATTC 59.736 47.826 0.00 0.00 0.00 2.67
1866 2600 1.584724 TCTCCTGTTCCCTCCATTCC 58.415 55.000 0.00 0.00 0.00 3.01
1867 2601 1.203428 TCTCCTGTTCCCTCCATTCCA 60.203 52.381 0.00 0.00 0.00 3.53
1868 2602 1.849039 CTCCTGTTCCCTCCATTCCAT 59.151 52.381 0.00 0.00 0.00 3.41
1869 2603 3.048600 CTCCTGTTCCCTCCATTCCATA 58.951 50.000 0.00 0.00 0.00 2.74
1870 2604 3.048600 TCCTGTTCCCTCCATTCCATAG 58.951 50.000 0.00 0.00 0.00 2.23
1871 2605 2.780010 CCTGTTCCCTCCATTCCATAGT 59.220 50.000 0.00 0.00 0.00 2.12
1872 2606 3.203040 CCTGTTCCCTCCATTCCATAGTT 59.797 47.826 0.00 0.00 0.00 2.24
1873 2607 4.325344 CCTGTTCCCTCCATTCCATAGTTT 60.325 45.833 0.00 0.00 0.00 2.66
1874 2608 5.104109 CCTGTTCCCTCCATTCCATAGTTTA 60.104 44.000 0.00 0.00 0.00 2.01
1875 2609 6.001449 TGTTCCCTCCATTCCATAGTTTAG 57.999 41.667 0.00 0.00 0.00 1.85
1876 2610 5.491078 TGTTCCCTCCATTCCATAGTTTAGT 59.509 40.000 0.00 0.00 0.00 2.24
1877 2611 5.630415 TCCCTCCATTCCATAGTTTAGTG 57.370 43.478 0.00 0.00 0.00 2.74
1878 2612 4.137543 CCCTCCATTCCATAGTTTAGTGC 58.862 47.826 0.00 0.00 0.00 4.40
1879 2613 4.385199 CCCTCCATTCCATAGTTTAGTGCA 60.385 45.833 0.00 0.00 0.00 4.57
1880 2614 4.576463 CCTCCATTCCATAGTTTAGTGCAC 59.424 45.833 9.40 9.40 0.00 4.57
1881 2615 5.431765 CTCCATTCCATAGTTTAGTGCACT 58.568 41.667 25.12 25.12 0.00 4.40
1882 2616 5.815581 TCCATTCCATAGTTTAGTGCACTT 58.184 37.500 27.06 9.59 0.00 3.16
1883 2617 5.647658 TCCATTCCATAGTTTAGTGCACTTG 59.352 40.000 27.06 15.68 0.00 3.16
1884 2618 5.335127 CATTCCATAGTTTAGTGCACTTGC 58.665 41.667 27.06 15.09 42.50 4.01
1896 2630 2.475200 GCACTTGCACTTTTCGAGTT 57.525 45.000 0.00 0.00 41.59 3.01
1897 2631 2.797491 GCACTTGCACTTTTCGAGTTT 58.203 42.857 0.00 0.00 41.59 2.66
1898 2632 3.179048 GCACTTGCACTTTTCGAGTTTT 58.821 40.909 0.00 0.00 41.59 2.43
1899 2633 4.347813 GCACTTGCACTTTTCGAGTTTTA 58.652 39.130 0.00 0.00 41.59 1.52
1900 2634 4.796312 GCACTTGCACTTTTCGAGTTTTAA 59.204 37.500 0.00 0.00 41.59 1.52
1901 2635 5.052370 GCACTTGCACTTTTCGAGTTTTAAG 60.052 40.000 0.00 0.00 41.59 1.85
1902 2636 6.027749 CACTTGCACTTTTCGAGTTTTAAGT 58.972 36.000 0.00 0.00 36.10 2.24
1903 2637 6.526674 CACTTGCACTTTTCGAGTTTTAAGTT 59.473 34.615 0.00 0.00 36.10 2.66
1904 2638 7.061789 CACTTGCACTTTTCGAGTTTTAAGTTT 59.938 33.333 0.00 0.00 36.10 2.66
1905 2639 6.862944 TGCACTTTTCGAGTTTTAAGTTTG 57.137 33.333 0.00 0.00 36.10 2.93
1906 2640 6.613233 TGCACTTTTCGAGTTTTAAGTTTGA 58.387 32.000 0.00 0.00 36.10 2.69
1907 2641 7.085116 TGCACTTTTCGAGTTTTAAGTTTGAA 58.915 30.769 0.00 0.00 36.10 2.69
1908 2642 7.757624 TGCACTTTTCGAGTTTTAAGTTTGAAT 59.242 29.630 0.00 0.00 36.10 2.57
1909 2643 8.050170 GCACTTTTCGAGTTTTAAGTTTGAATG 58.950 33.333 0.00 0.00 36.10 2.67
1910 2644 9.072294 CACTTTTCGAGTTTTAAGTTTGAATGT 57.928 29.630 0.00 0.00 36.10 2.71
1945 2679 2.808315 TTTTTGCTTCCGCCGCAA 59.192 50.000 0.00 0.00 44.83 4.85
1946 2680 1.365633 TTTTTGCTTCCGCCGCAAT 59.634 47.368 5.33 0.00 45.67 3.56
1947 2681 0.665972 TTTTTGCTTCCGCCGCAATC 60.666 50.000 5.33 0.00 45.67 2.67
1948 2682 2.794627 TTTTGCTTCCGCCGCAATCG 62.795 55.000 5.33 0.00 45.67 3.34
1951 2685 4.520846 CTTCCGCCGCAATCGCAC 62.521 66.667 0.00 0.00 38.40 5.34
1954 2688 4.892379 CCGCCGCAATCGCACATG 62.892 66.667 0.00 0.00 38.40 3.21
1955 2689 4.164664 CGCCGCAATCGCACATGT 62.165 61.111 0.00 0.00 38.40 3.21
1956 2690 2.179018 GCCGCAATCGCACATGTT 59.821 55.556 0.00 0.00 38.40 2.71
1957 2691 1.427419 GCCGCAATCGCACATGTTA 59.573 52.632 0.00 0.00 38.40 2.41
1958 2692 0.589729 GCCGCAATCGCACATGTTAG 60.590 55.000 0.00 0.00 38.40 2.34
1959 2693 0.726827 CCGCAATCGCACATGTTAGT 59.273 50.000 0.00 0.00 38.40 2.24
1960 2694 1.130373 CCGCAATCGCACATGTTAGTT 59.870 47.619 0.00 0.00 38.40 2.24
1961 2695 2.350192 CCGCAATCGCACATGTTAGTTA 59.650 45.455 0.00 0.00 38.40 2.24
1962 2696 3.181515 CCGCAATCGCACATGTTAGTTAA 60.182 43.478 0.00 0.00 38.40 2.01
1963 2697 4.399112 CGCAATCGCACATGTTAGTTAAA 58.601 39.130 0.00 0.00 38.40 1.52
1964 2698 5.027737 CGCAATCGCACATGTTAGTTAAAT 58.972 37.500 0.00 0.00 38.40 1.40
1965 2699 5.511377 CGCAATCGCACATGTTAGTTAAATT 59.489 36.000 0.00 0.00 38.40 1.82
1966 2700 6.033407 CGCAATCGCACATGTTAGTTAAATTT 59.967 34.615 0.00 0.00 38.40 1.82
1967 2701 7.217258 CGCAATCGCACATGTTAGTTAAATTTA 59.783 33.333 0.00 0.00 38.40 1.40
1968 2702 9.019764 GCAATCGCACATGTTAGTTAAATTTAT 57.980 29.630 0.00 0.00 38.36 1.40
2011 2745 1.979897 TGCAAACGCACTGCATTATG 58.020 45.000 1.11 0.00 44.67 1.90
2012 2746 1.538950 TGCAAACGCACTGCATTATGA 59.461 42.857 1.11 0.00 44.67 2.15
2013 2747 2.030451 TGCAAACGCACTGCATTATGAA 60.030 40.909 1.11 0.00 44.67 2.57
2014 2748 2.985809 GCAAACGCACTGCATTATGAAA 59.014 40.909 1.11 0.00 39.69 2.69
2015 2749 3.613737 GCAAACGCACTGCATTATGAAAT 59.386 39.130 1.11 0.00 39.69 2.17
2016 2750 4.491280 GCAAACGCACTGCATTATGAAATG 60.491 41.667 1.11 0.00 44.53 2.32
2017 2751 4.700268 AACGCACTGCATTATGAAATGA 57.300 36.364 1.11 0.00 44.50 2.57
2018 2752 4.700268 ACGCACTGCATTATGAAATGAA 57.300 36.364 1.11 0.00 44.50 2.57
2040 2774 9.669887 ATGAAGATCATAATATTCTTCCAGCTC 57.330 33.333 10.51 0.00 42.96 4.09
2041 2775 8.878211 TGAAGATCATAATATTCTTCCAGCTCT 58.122 33.333 10.51 0.00 42.96 4.09
2042 2776 9.369904 GAAGATCATAATATTCTTCCAGCTCTC 57.630 37.037 0.00 0.00 39.50 3.20
2043 2777 8.669055 AGATCATAATATTCTTCCAGCTCTCT 57.331 34.615 0.00 0.00 0.00 3.10
2044 2778 9.766754 AGATCATAATATTCTTCCAGCTCTCTA 57.233 33.333 0.00 0.00 0.00 2.43
2046 2780 8.359875 TCATAATATTCTTCCAGCTCTCTAGG 57.640 38.462 0.00 0.00 0.00 3.02
2047 2781 7.952930 TCATAATATTCTTCCAGCTCTCTAGGT 59.047 37.037 0.00 0.00 0.00 3.08
2052 2786 2.811101 CAGCTCTCTAGGTGCCGG 59.189 66.667 0.00 0.00 43.73 6.13
2053 2787 1.754621 CAGCTCTCTAGGTGCCGGA 60.755 63.158 5.05 0.00 43.73 5.14
2054 2788 1.755008 AGCTCTCTAGGTGCCGGAC 60.755 63.158 5.05 0.00 35.28 4.79
2055 2789 1.755008 GCTCTCTAGGTGCCGGACT 60.755 63.158 5.05 1.54 0.00 3.85
2056 2790 1.730451 GCTCTCTAGGTGCCGGACTC 61.730 65.000 5.05 0.00 0.00 3.36
2057 2791 0.106918 CTCTCTAGGTGCCGGACTCT 60.107 60.000 5.05 0.01 0.00 3.24
2058 2792 0.394488 TCTCTAGGTGCCGGACTCTG 60.394 60.000 5.05 0.00 0.00 3.35
2059 2793 2.010582 CTCTAGGTGCCGGACTCTGC 62.011 65.000 5.05 0.00 0.00 4.26
2060 2794 3.075005 TAGGTGCCGGACTCTGCC 61.075 66.667 5.05 0.00 0.00 4.85
2068 2802 3.462678 GGACTCTGCCCGAGGGAC 61.463 72.222 13.28 4.01 44.33 4.46
2069 2803 2.363147 GACTCTGCCCGAGGGACT 60.363 66.667 13.28 0.00 44.33 3.85
2070 2804 2.681778 ACTCTGCCCGAGGGACTG 60.682 66.667 13.28 7.62 44.33 3.51
2071 2805 4.154347 CTCTGCCCGAGGGACTGC 62.154 72.222 13.28 0.00 41.55 4.40
2078 2812 4.803426 CGAGGGACTGCGGCTCAC 62.803 72.222 0.00 0.00 41.55 3.51
2079 2813 3.695606 GAGGGACTGCGGCTCACA 61.696 66.667 0.00 0.00 41.55 3.58
2080 2814 3.655810 GAGGGACTGCGGCTCACAG 62.656 68.421 0.00 0.00 41.55 3.66
2081 2815 3.695606 GGGACTGCGGCTCACAGA 61.696 66.667 0.00 0.00 38.55 3.41
2082 2816 2.581354 GGACTGCGGCTCACAGAT 59.419 61.111 0.00 0.00 38.55 2.90
2083 2817 1.078848 GGACTGCGGCTCACAGATT 60.079 57.895 0.00 0.00 38.55 2.40
2084 2818 0.674895 GGACTGCGGCTCACAGATTT 60.675 55.000 0.00 0.00 38.55 2.17
2085 2819 0.723981 GACTGCGGCTCACAGATTTC 59.276 55.000 0.00 0.00 38.55 2.17
2086 2820 0.035317 ACTGCGGCTCACAGATTTCA 59.965 50.000 0.00 0.00 38.55 2.69
2087 2821 0.445436 CTGCGGCTCACAGATTTCAC 59.555 55.000 0.00 0.00 37.32 3.18
2088 2822 0.250252 TGCGGCTCACAGATTTCACA 60.250 50.000 0.00 0.00 0.00 3.58
2089 2823 0.166814 GCGGCTCACAGATTTCACAC 59.833 55.000 0.00 0.00 0.00 3.82
2090 2824 0.798776 CGGCTCACAGATTTCACACC 59.201 55.000 0.00 0.00 0.00 4.16
2091 2825 1.877680 CGGCTCACAGATTTCACACCA 60.878 52.381 0.00 0.00 0.00 4.17
2092 2826 1.537202 GGCTCACAGATTTCACACCAC 59.463 52.381 0.00 0.00 0.00 4.16
2093 2827 1.537202 GCTCACAGATTTCACACCACC 59.463 52.381 0.00 0.00 0.00 4.61
2094 2828 2.849942 CTCACAGATTTCACACCACCA 58.150 47.619 0.00 0.00 0.00 4.17
2095 2829 2.810274 CTCACAGATTTCACACCACCAG 59.190 50.000 0.00 0.00 0.00 4.00
2096 2830 2.437651 TCACAGATTTCACACCACCAGA 59.562 45.455 0.00 0.00 0.00 3.86
2097 2831 3.118075 TCACAGATTTCACACCACCAGAA 60.118 43.478 0.00 0.00 0.00 3.02
2098 2832 3.003689 CACAGATTTCACACCACCAGAAC 59.996 47.826 0.00 0.00 0.00 3.01
2099 2833 3.117888 ACAGATTTCACACCACCAGAACT 60.118 43.478 0.00 0.00 0.00 3.01
2100 2834 4.102524 ACAGATTTCACACCACCAGAACTA 59.897 41.667 0.00 0.00 0.00 2.24
2101 2835 4.692625 CAGATTTCACACCACCAGAACTAG 59.307 45.833 0.00 0.00 0.00 2.57
2102 2836 4.593206 AGATTTCACACCACCAGAACTAGA 59.407 41.667 0.00 0.00 0.00 2.43
2103 2837 4.974645 TTTCACACCACCAGAACTAGAT 57.025 40.909 0.00 0.00 0.00 1.98
2104 2838 3.961480 TCACACCACCAGAACTAGATG 57.039 47.619 0.00 0.00 0.00 2.90
2105 2839 2.567169 TCACACCACCAGAACTAGATGG 59.433 50.000 0.00 4.26 42.60 3.51
2116 2850 7.502120 CCAGAACTAGATGGTCCATAATTTG 57.498 40.000 3.72 0.00 31.28 2.32
2117 2851 7.056635 CCAGAACTAGATGGTCCATAATTTGT 58.943 38.462 3.72 0.00 31.28 2.83
2118 2852 7.557719 CCAGAACTAGATGGTCCATAATTTGTT 59.442 37.037 3.72 7.11 31.28 2.83
2119 2853 8.616076 CAGAACTAGATGGTCCATAATTTGTTC 58.384 37.037 19.06 19.06 31.28 3.18
2120 2854 7.775561 AGAACTAGATGGTCCATAATTTGTTCC 59.224 37.037 20.99 11.79 31.28 3.62
2121 2855 6.055588 ACTAGATGGTCCATAATTTGTTCCG 58.944 40.000 3.72 0.00 0.00 4.30
2122 2856 3.632145 AGATGGTCCATAATTTGTTCCGC 59.368 43.478 3.72 0.00 0.00 5.54
2123 2857 1.740585 TGGTCCATAATTTGTTCCGCG 59.259 47.619 0.00 0.00 0.00 6.46
2124 2858 1.741145 GGTCCATAATTTGTTCCGCGT 59.259 47.619 4.92 0.00 0.00 6.01
2125 2859 2.937799 GGTCCATAATTTGTTCCGCGTA 59.062 45.455 4.92 0.00 0.00 4.42
2126 2860 3.001939 GGTCCATAATTTGTTCCGCGTAG 59.998 47.826 4.92 0.00 0.00 3.51
2139 2873 2.731374 CGTAGCAGCTAGGCCTCC 59.269 66.667 9.68 0.69 0.00 4.30
2140 2874 1.830408 CGTAGCAGCTAGGCCTCCT 60.830 63.158 9.68 3.77 37.71 3.69
2141 2875 1.745264 GTAGCAGCTAGGCCTCCTG 59.255 63.158 22.75 22.75 34.61 3.86
2142 2876 1.458398 TAGCAGCTAGGCCTCCTGG 60.458 63.158 26.10 11.50 34.61 4.45
2159 2893 4.570874 GCCCGGATGCCTCTTCCC 62.571 72.222 0.73 0.00 0.00 3.97
2160 2894 2.770048 CCCGGATGCCTCTTCCCT 60.770 66.667 0.73 0.00 0.00 4.20
2161 2895 2.378634 CCCGGATGCCTCTTCCCTT 61.379 63.158 0.73 0.00 0.00 3.95
2162 2896 1.147153 CCGGATGCCTCTTCCCTTC 59.853 63.158 0.00 0.00 0.00 3.46
2163 2897 1.147153 CGGATGCCTCTTCCCTTCC 59.853 63.158 0.00 0.00 0.00 3.46
2164 2898 1.534203 GGATGCCTCTTCCCTTCCC 59.466 63.158 0.00 0.00 0.00 3.97
2165 2899 1.281925 GGATGCCTCTTCCCTTCCCA 61.282 60.000 0.00 0.00 0.00 4.37
2166 2900 0.182299 GATGCCTCTTCCCTTCCCAG 59.818 60.000 0.00 0.00 0.00 4.45
2167 2901 0.253347 ATGCCTCTTCCCTTCCCAGA 60.253 55.000 0.00 0.00 0.00 3.86
2168 2902 0.253347 TGCCTCTTCCCTTCCCAGAT 60.253 55.000 0.00 0.00 0.00 2.90
2169 2903 1.009552 TGCCTCTTCCCTTCCCAGATA 59.990 52.381 0.00 0.00 0.00 1.98
2170 2904 1.696884 GCCTCTTCCCTTCCCAGATAG 59.303 57.143 0.00 0.00 0.00 2.08
2171 2905 1.696884 CCTCTTCCCTTCCCAGATAGC 59.303 57.143 0.00 0.00 0.00 2.97
2172 2906 1.696884 CTCTTCCCTTCCCAGATAGCC 59.303 57.143 0.00 0.00 0.00 3.93
2173 2907 0.767998 CTTCCCTTCCCAGATAGCCC 59.232 60.000 0.00 0.00 0.00 5.19
2174 2908 0.045623 TTCCCTTCCCAGATAGCCCA 59.954 55.000 0.00 0.00 0.00 5.36
2175 2909 0.271927 TCCCTTCCCAGATAGCCCAT 59.728 55.000 0.00 0.00 0.00 4.00
2176 2910 0.695347 CCCTTCCCAGATAGCCCATC 59.305 60.000 0.00 0.00 0.00 3.51
2177 2911 0.322975 CCTTCCCAGATAGCCCATCG 59.677 60.000 0.00 0.00 38.81 3.84
2178 2912 0.322975 CTTCCCAGATAGCCCATCGG 59.677 60.000 0.00 0.00 38.81 4.18
2188 2922 2.770048 CCCATCGGCCTTCCTCCT 60.770 66.667 0.00 0.00 0.00 3.69
2189 2923 2.378634 CCCATCGGCCTTCCTCCTT 61.379 63.158 0.00 0.00 0.00 3.36
2190 2924 1.609783 CCATCGGCCTTCCTCCTTT 59.390 57.895 0.00 0.00 0.00 3.11
2191 2925 0.464554 CCATCGGCCTTCCTCCTTTC 60.465 60.000 0.00 0.00 0.00 2.62
2192 2926 0.464554 CATCGGCCTTCCTCCTTTCC 60.465 60.000 0.00 0.00 0.00 3.13
2193 2927 1.972660 ATCGGCCTTCCTCCTTTCCG 61.973 60.000 0.00 0.00 38.34 4.30
2194 2928 2.272471 GGCCTTCCTCCTTTCCGG 59.728 66.667 0.00 0.00 0.00 5.14
2195 2929 2.298661 GGCCTTCCTCCTTTCCGGA 61.299 63.158 0.00 0.00 40.30 5.14
2196 2930 1.683441 GCCTTCCTCCTTTCCGGAA 59.317 57.895 14.35 14.35 42.53 4.30
2201 2935 3.350219 TTCCTCCTTTCCGGAAGAATG 57.650 47.619 17.97 9.36 42.53 2.67
2202 2936 2.266279 TCCTCCTTTCCGGAAGAATGT 58.734 47.619 17.97 0.00 42.53 2.71
2203 2937 3.446968 TCCTCCTTTCCGGAAGAATGTA 58.553 45.455 17.97 0.00 42.53 2.29
2204 2938 4.037927 TCCTCCTTTCCGGAAGAATGTAT 58.962 43.478 17.97 0.00 42.53 2.29
2205 2939 4.101119 TCCTCCTTTCCGGAAGAATGTATC 59.899 45.833 17.97 0.00 42.53 2.24
2206 2940 4.141711 CCTCCTTTCCGGAAGAATGTATCA 60.142 45.833 17.97 0.00 42.53 2.15
2207 2941 5.455326 CCTCCTTTCCGGAAGAATGTATCAT 60.455 44.000 17.97 0.00 42.53 2.45
2208 2942 5.368145 TCCTTTCCGGAAGAATGTATCATG 58.632 41.667 17.97 0.00 39.40 3.07
2209 2943 5.104527 TCCTTTCCGGAAGAATGTATCATGT 60.105 40.000 17.97 0.00 39.40 3.21
2210 2944 6.099125 TCCTTTCCGGAAGAATGTATCATGTA 59.901 38.462 17.97 0.00 39.40 2.29
2211 2945 6.425114 CCTTTCCGGAAGAATGTATCATGTAG 59.575 42.308 17.97 6.39 37.57 2.74
2212 2946 4.883083 TCCGGAAGAATGTATCATGTAGC 58.117 43.478 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.898861 TGCTTGGAGTTTAGGTTGGAAAAT 59.101 37.500 0.00 0.00 0.00 1.82
1 2 4.282496 TGCTTGGAGTTTAGGTTGGAAAA 58.718 39.130 0.00 0.00 0.00 2.29
2 3 3.904717 TGCTTGGAGTTTAGGTTGGAAA 58.095 40.909 0.00 0.00 0.00 3.13
3 4 3.586470 TGCTTGGAGTTTAGGTTGGAA 57.414 42.857 0.00 0.00 0.00 3.53
4 5 3.586470 TTGCTTGGAGTTTAGGTTGGA 57.414 42.857 0.00 0.00 0.00 3.53
5 6 3.888930 TCTTTGCTTGGAGTTTAGGTTGG 59.111 43.478 0.00 0.00 0.00 3.77
6 7 4.821805 TCTCTTTGCTTGGAGTTTAGGTTG 59.178 41.667 0.00 0.00 0.00 3.77
7 8 4.822350 GTCTCTTTGCTTGGAGTTTAGGTT 59.178 41.667 0.00 0.00 0.00 3.50
8 9 4.390264 GTCTCTTTGCTTGGAGTTTAGGT 58.610 43.478 0.00 0.00 0.00 3.08
9 10 3.753797 GGTCTCTTTGCTTGGAGTTTAGG 59.246 47.826 0.00 0.00 0.00 2.69
10 11 4.453819 CAGGTCTCTTTGCTTGGAGTTTAG 59.546 45.833 0.00 0.00 0.00 1.85
11 12 4.141482 ACAGGTCTCTTTGCTTGGAGTTTA 60.141 41.667 0.00 0.00 0.00 2.01
12 13 3.217626 CAGGTCTCTTTGCTTGGAGTTT 58.782 45.455 0.00 0.00 0.00 2.66
13 14 2.173569 ACAGGTCTCTTTGCTTGGAGTT 59.826 45.455 0.00 0.00 0.00 3.01
14 15 1.771255 ACAGGTCTCTTTGCTTGGAGT 59.229 47.619 0.00 0.00 0.00 3.85
15 16 2.557920 ACAGGTCTCTTTGCTTGGAG 57.442 50.000 0.00 0.00 0.00 3.86
16 17 3.368427 CGATACAGGTCTCTTTGCTTGGA 60.368 47.826 0.00 0.00 0.00 3.53
17 18 2.932614 CGATACAGGTCTCTTTGCTTGG 59.067 50.000 0.00 0.00 0.00 3.61
18 19 3.589988 ACGATACAGGTCTCTTTGCTTG 58.410 45.455 0.00 0.00 0.00 4.01
19 20 3.963428 ACGATACAGGTCTCTTTGCTT 57.037 42.857 0.00 0.00 0.00 3.91
20 21 6.096423 TGTTATACGATACAGGTCTCTTTGCT 59.904 38.462 0.00 0.00 0.00 3.91
21 22 6.198591 GTGTTATACGATACAGGTCTCTTTGC 59.801 42.308 0.00 0.00 0.00 3.68
22 23 6.696148 GGTGTTATACGATACAGGTCTCTTTG 59.304 42.308 0.00 0.00 0.00 2.77
23 24 6.183360 GGGTGTTATACGATACAGGTCTCTTT 60.183 42.308 0.00 0.00 0.00 2.52
24 25 5.301298 GGGTGTTATACGATACAGGTCTCTT 59.699 44.000 0.00 0.00 0.00 2.85
25 26 4.826183 GGGTGTTATACGATACAGGTCTCT 59.174 45.833 0.00 0.00 0.00 3.10
26 27 4.826183 AGGGTGTTATACGATACAGGTCTC 59.174 45.833 0.00 0.00 0.00 3.36
27 28 4.583489 CAGGGTGTTATACGATACAGGTCT 59.417 45.833 0.00 0.00 0.00 3.85
28 29 4.795308 GCAGGGTGTTATACGATACAGGTC 60.795 50.000 0.00 0.00 0.00 3.85
29 30 3.069158 GCAGGGTGTTATACGATACAGGT 59.931 47.826 0.00 0.00 0.00 4.00
30 31 3.069016 TGCAGGGTGTTATACGATACAGG 59.931 47.826 0.00 0.00 0.00 4.00
31 32 4.316205 TGCAGGGTGTTATACGATACAG 57.684 45.455 0.00 0.00 0.00 2.74
32 33 4.262292 GGATGCAGGGTGTTATACGATACA 60.262 45.833 0.00 0.00 0.00 2.29
33 34 4.243270 GGATGCAGGGTGTTATACGATAC 58.757 47.826 0.00 0.00 0.00 2.24
34 35 3.898741 TGGATGCAGGGTGTTATACGATA 59.101 43.478 0.00 0.00 0.00 2.92
35 36 2.703536 TGGATGCAGGGTGTTATACGAT 59.296 45.455 0.00 0.00 0.00 3.73
36 37 2.112190 TGGATGCAGGGTGTTATACGA 58.888 47.619 0.00 0.00 0.00 3.43
37 38 2.613026 TGGATGCAGGGTGTTATACG 57.387 50.000 0.00 0.00 0.00 3.06
38 39 4.142249 GGTTTTGGATGCAGGGTGTTATAC 60.142 45.833 0.00 0.00 0.00 1.47
39 40 4.020543 GGTTTTGGATGCAGGGTGTTATA 58.979 43.478 0.00 0.00 0.00 0.98
47 48 1.135024 CGGAATGGTTTTGGATGCAGG 60.135 52.381 0.00 0.00 0.00 4.85
59 60 3.319405 TGTAATTGCACAAACGGAATGGT 59.681 39.130 0.00 0.00 0.00 3.55
77 78 6.126710 TGGTTGTTCTTTCTCCCTAACTGTAA 60.127 38.462 0.00 0.00 0.00 2.41
82 83 5.131067 ACTTGGTTGTTCTTTCTCCCTAAC 58.869 41.667 0.00 0.00 0.00 2.34
88 89 4.214332 CCAGCTACTTGGTTGTTCTTTCTC 59.786 45.833 0.00 0.00 33.38 2.87
89 90 4.137543 CCAGCTACTTGGTTGTTCTTTCT 58.862 43.478 0.00 0.00 33.38 2.52
93 94 1.545651 GCCCAGCTACTTGGTTGTTCT 60.546 52.381 0.00 0.00 36.45 3.01
94 95 0.881796 GCCCAGCTACTTGGTTGTTC 59.118 55.000 0.00 0.00 36.45 3.18
97 98 2.690778 GCGCCCAGCTACTTGGTTG 61.691 63.158 0.00 0.00 44.04 3.77
109 110 1.534336 ATGATTTGCACTTGCGCCCA 61.534 50.000 4.18 0.00 45.83 5.36
113 114 2.247637 CTGACATGATTTGCACTTGCG 58.752 47.619 0.00 0.00 45.83 4.85
907 1016 1.339610 TGTTGATTTCTTGGTTGCCGG 59.660 47.619 0.00 0.00 0.00 6.13
1264 1974 3.869272 CGACAGCAATGCCGGAGC 61.869 66.667 5.05 2.48 40.48 4.70
1486 2211 0.460987 CATCAACTGAGTCCGCCTCC 60.461 60.000 0.00 0.00 39.65 4.30
1487 2212 0.460987 CCATCAACTGAGTCCGCCTC 60.461 60.000 0.00 0.00 40.89 4.70
1492 2217 2.479566 TGAAGCCATCAACTGAGTCC 57.520 50.000 0.00 0.00 34.30 3.85
1495 2220 4.458295 ACAAGAATGAAGCCATCAACTGAG 59.542 41.667 0.00 0.00 42.54 3.35
1561 2294 0.884704 GTGGCACATGTTCGTCCAGT 60.885 55.000 13.86 0.00 44.52 4.00
1663 2396 1.179174 CGGATGGCTATCTCGGTGGA 61.179 60.000 10.15 0.00 33.68 4.02
1735 2469 9.653287 CGCTAGATTAGATATGTTTCCCATTTA 57.347 33.333 0.00 0.00 34.86 1.40
1792 2526 1.215014 CGATAATGCAAGCGAGGCGA 61.215 55.000 0.00 0.00 0.00 5.54
1793 2527 1.202568 CGATAATGCAAGCGAGGCG 59.797 57.895 0.00 0.00 0.00 5.52
1799 2533 3.397482 AGAGATGGTCGATAATGCAAGC 58.603 45.455 0.00 0.00 0.00 4.01
1803 2537 3.256879 TGAGGAGAGATGGTCGATAATGC 59.743 47.826 0.00 0.00 0.00 3.56
1804 2538 4.279420 TGTGAGGAGAGATGGTCGATAATG 59.721 45.833 0.00 0.00 0.00 1.90
1805 2539 4.474394 TGTGAGGAGAGATGGTCGATAAT 58.526 43.478 0.00 0.00 0.00 1.28
1806 2540 3.898482 TGTGAGGAGAGATGGTCGATAA 58.102 45.455 0.00 0.00 0.00 1.75
1807 2541 3.577805 TGTGAGGAGAGATGGTCGATA 57.422 47.619 0.00 0.00 0.00 2.92
1808 2542 2.443958 TGTGAGGAGAGATGGTCGAT 57.556 50.000 0.00 0.00 0.00 3.59
1809 2543 2.302260 GATGTGAGGAGAGATGGTCGA 58.698 52.381 0.00 0.00 0.00 4.20
1810 2544 2.027385 TGATGTGAGGAGAGATGGTCG 58.973 52.381 0.00 0.00 0.00 4.79
1811 2545 3.030291 AGTGATGTGAGGAGAGATGGTC 58.970 50.000 0.00 0.00 0.00 4.02
1812 2546 3.030291 GAGTGATGTGAGGAGAGATGGT 58.970 50.000 0.00 0.00 0.00 3.55
1813 2547 2.364970 GGAGTGATGTGAGGAGAGATGG 59.635 54.545 0.00 0.00 0.00 3.51
1814 2548 2.364970 GGGAGTGATGTGAGGAGAGATG 59.635 54.545 0.00 0.00 0.00 2.90
1815 2549 2.676748 GGGAGTGATGTGAGGAGAGAT 58.323 52.381 0.00 0.00 0.00 2.75
1816 2550 1.683319 CGGGAGTGATGTGAGGAGAGA 60.683 57.143 0.00 0.00 0.00 3.10
1817 2551 0.743688 CGGGAGTGATGTGAGGAGAG 59.256 60.000 0.00 0.00 0.00 3.20
1818 2552 1.323271 GCGGGAGTGATGTGAGGAGA 61.323 60.000 0.00 0.00 0.00 3.71
1819 2553 1.142748 GCGGGAGTGATGTGAGGAG 59.857 63.158 0.00 0.00 0.00 3.69
1820 2554 2.359169 GGCGGGAGTGATGTGAGGA 61.359 63.158 0.00 0.00 0.00 3.71
1821 2555 2.187946 GGCGGGAGTGATGTGAGG 59.812 66.667 0.00 0.00 0.00 3.86
1822 2556 1.142748 GAGGCGGGAGTGATGTGAG 59.857 63.158 0.00 0.00 0.00 3.51
1823 2557 2.710902 CGAGGCGGGAGTGATGTGA 61.711 63.158 0.00 0.00 0.00 3.58
1824 2558 2.202797 CGAGGCGGGAGTGATGTG 60.203 66.667 0.00 0.00 0.00 3.21
1825 2559 4.148825 GCGAGGCGGGAGTGATGT 62.149 66.667 0.00 0.00 0.00 3.06
1826 2560 3.781770 GAGCGAGGCGGGAGTGATG 62.782 68.421 0.00 0.00 0.00 3.07
1827 2561 3.532155 GAGCGAGGCGGGAGTGAT 61.532 66.667 0.00 0.00 0.00 3.06
1828 2562 4.742649 AGAGCGAGGCGGGAGTGA 62.743 66.667 0.00 0.00 0.00 3.41
1829 2563 3.302347 AAAGAGCGAGGCGGGAGTG 62.302 63.158 0.00 0.00 0.00 3.51
1830 2564 2.997897 AAAGAGCGAGGCGGGAGT 60.998 61.111 0.00 0.00 0.00 3.85
1831 2565 2.202810 GAAAGAGCGAGGCGGGAG 60.203 66.667 0.00 0.00 0.00 4.30
1832 2566 2.680352 AGAAAGAGCGAGGCGGGA 60.680 61.111 0.00 0.00 0.00 5.14
1833 2567 2.202810 GAGAAAGAGCGAGGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
1834 2568 2.202810 GGAGAAAGAGCGAGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
1835 2569 1.518133 CAGGAGAAAGAGCGAGGCG 60.518 63.158 0.00 0.00 0.00 5.52
1836 2570 0.036858 AACAGGAGAAAGAGCGAGGC 60.037 55.000 0.00 0.00 0.00 4.70
1837 2571 1.404851 GGAACAGGAGAAAGAGCGAGG 60.405 57.143 0.00 0.00 0.00 4.63
1838 2572 1.404851 GGGAACAGGAGAAAGAGCGAG 60.405 57.143 0.00 0.00 0.00 5.03
1839 2573 0.608640 GGGAACAGGAGAAAGAGCGA 59.391 55.000 0.00 0.00 0.00 4.93
1840 2574 0.610687 AGGGAACAGGAGAAAGAGCG 59.389 55.000 0.00 0.00 0.00 5.03
1841 2575 1.065782 GGAGGGAACAGGAGAAAGAGC 60.066 57.143 0.00 0.00 0.00 4.09
1842 2576 2.260822 TGGAGGGAACAGGAGAAAGAG 58.739 52.381 0.00 0.00 0.00 2.85
1843 2577 2.415983 TGGAGGGAACAGGAGAAAGA 57.584 50.000 0.00 0.00 0.00 2.52
1844 2578 3.615155 GAATGGAGGGAACAGGAGAAAG 58.385 50.000 0.00 0.00 0.00 2.62
1845 2579 2.308866 GGAATGGAGGGAACAGGAGAAA 59.691 50.000 0.00 0.00 0.00 2.52
1846 2580 1.916181 GGAATGGAGGGAACAGGAGAA 59.084 52.381 0.00 0.00 0.00 2.87
1847 2581 1.203428 TGGAATGGAGGGAACAGGAGA 60.203 52.381 0.00 0.00 0.00 3.71
1848 2582 1.289160 TGGAATGGAGGGAACAGGAG 58.711 55.000 0.00 0.00 0.00 3.69
1849 2583 1.985622 ATGGAATGGAGGGAACAGGA 58.014 50.000 0.00 0.00 0.00 3.86
1850 2584 2.780010 ACTATGGAATGGAGGGAACAGG 59.220 50.000 0.00 0.00 0.00 4.00
1851 2585 4.510167 AACTATGGAATGGAGGGAACAG 57.490 45.455 0.00 0.00 0.00 3.16
1852 2586 4.946160 AAACTATGGAATGGAGGGAACA 57.054 40.909 0.00 0.00 0.00 3.18
1853 2587 5.823045 CACTAAACTATGGAATGGAGGGAAC 59.177 44.000 0.00 0.00 0.00 3.62
1854 2588 5.631481 GCACTAAACTATGGAATGGAGGGAA 60.631 44.000 0.00 0.00 0.00 3.97
1855 2589 4.141482 GCACTAAACTATGGAATGGAGGGA 60.141 45.833 0.00 0.00 0.00 4.20
1856 2590 4.137543 GCACTAAACTATGGAATGGAGGG 58.862 47.826 0.00 0.00 0.00 4.30
1857 2591 4.576463 GTGCACTAAACTATGGAATGGAGG 59.424 45.833 10.32 0.00 0.00 4.30
1858 2592 5.431765 AGTGCACTAAACTATGGAATGGAG 58.568 41.667 20.16 0.00 0.00 3.86
1859 2593 5.435686 AGTGCACTAAACTATGGAATGGA 57.564 39.130 20.16 0.00 0.00 3.41
1860 2594 5.677091 GCAAGTGCACTAAACTATGGAATGG 60.677 44.000 22.01 0.00 41.59 3.16
1861 2595 5.335127 GCAAGTGCACTAAACTATGGAATG 58.665 41.667 22.01 11.00 41.59 2.67
1862 2596 5.567138 GCAAGTGCACTAAACTATGGAAT 57.433 39.130 22.01 0.00 41.59 3.01
1877 2611 2.475200 AACTCGAAAAGTGCAAGTGC 57.525 45.000 0.00 0.00 38.58 4.40
1878 2612 6.027749 ACTTAAAACTCGAAAAGTGCAAGTG 58.972 36.000 0.00 0.00 38.58 3.16
1879 2613 6.190954 ACTTAAAACTCGAAAAGTGCAAGT 57.809 33.333 0.00 0.00 38.58 3.16
1880 2614 7.272515 TCAAACTTAAAACTCGAAAAGTGCAAG 59.727 33.333 0.00 0.00 38.58 4.01
1881 2615 7.085116 TCAAACTTAAAACTCGAAAAGTGCAA 58.915 30.769 0.00 0.00 38.58 4.08
1882 2616 6.613233 TCAAACTTAAAACTCGAAAAGTGCA 58.387 32.000 0.00 0.00 38.58 4.57
1883 2617 7.500807 TTCAAACTTAAAACTCGAAAAGTGC 57.499 32.000 0.00 0.00 38.58 4.40
1884 2618 9.072294 ACATTCAAACTTAAAACTCGAAAAGTG 57.928 29.630 0.00 0.00 38.58 3.16
1942 2676 6.869421 AATTTAACTAACATGTGCGATTGC 57.131 33.333 0.00 0.00 43.20 3.56
1993 2727 2.261037 TCATAATGCAGTGCGTTTGC 57.739 45.000 26.63 0.00 38.76 3.68
1994 2728 4.858140 TCATTTCATAATGCAGTGCGTTTG 59.142 37.500 26.63 21.66 40.78 2.93
1995 2729 5.058149 TCATTTCATAATGCAGTGCGTTT 57.942 34.783 26.63 16.74 40.78 3.60
1996 2730 4.700268 TCATTTCATAATGCAGTGCGTT 57.300 36.364 25.02 25.02 40.78 4.84
1997 2731 4.395854 TCTTCATTTCATAATGCAGTGCGT 59.604 37.500 11.20 7.46 40.78 5.24
1998 2732 4.912214 TCTTCATTTCATAATGCAGTGCG 58.088 39.130 11.20 0.00 40.78 5.34
1999 2733 6.500910 TGATCTTCATTTCATAATGCAGTGC 58.499 36.000 8.58 8.58 40.78 4.40
2014 2748 9.669887 GAGCTGGAAGAATATTATGATCTTCAT 57.330 33.333 17.39 0.00 46.92 2.57
2015 2749 8.878211 AGAGCTGGAAGAATATTATGATCTTCA 58.122 33.333 17.39 0.00 46.92 3.02
2016 2750 9.369904 GAGAGCTGGAAGAATATTATGATCTTC 57.630 37.037 0.00 11.09 45.26 2.87
2017 2751 9.103582 AGAGAGCTGGAAGAATATTATGATCTT 57.896 33.333 0.00 0.00 36.17 2.40
2018 2752 8.669055 AGAGAGCTGGAAGAATATTATGATCT 57.331 34.615 0.00 0.00 34.07 2.75
2020 2754 8.980596 CCTAGAGAGCTGGAAGAATATTATGAT 58.019 37.037 0.00 0.00 34.07 2.45
2021 2755 7.952930 ACCTAGAGAGCTGGAAGAATATTATGA 59.047 37.037 0.00 0.00 34.07 2.15
2022 2756 8.034215 CACCTAGAGAGCTGGAAGAATATTATG 58.966 40.741 0.00 0.00 34.07 1.90
2023 2757 7.310361 GCACCTAGAGAGCTGGAAGAATATTAT 60.310 40.741 0.00 0.00 34.07 1.28
2024 2758 6.015010 GCACCTAGAGAGCTGGAAGAATATTA 60.015 42.308 0.00 0.00 34.07 0.98
2025 2759 5.221621 GCACCTAGAGAGCTGGAAGAATATT 60.222 44.000 0.00 0.00 34.07 1.28
2026 2760 4.283212 GCACCTAGAGAGCTGGAAGAATAT 59.717 45.833 0.00 0.00 34.07 1.28
2027 2761 3.639094 GCACCTAGAGAGCTGGAAGAATA 59.361 47.826 0.00 0.00 34.07 1.75
2028 2762 2.433970 GCACCTAGAGAGCTGGAAGAAT 59.566 50.000 0.00 0.00 34.07 2.40
2029 2763 1.827969 GCACCTAGAGAGCTGGAAGAA 59.172 52.381 0.00 0.00 34.07 2.52
2030 2764 1.479709 GCACCTAGAGAGCTGGAAGA 58.520 55.000 0.00 0.00 34.07 2.87
2031 2765 0.463620 GGCACCTAGAGAGCTGGAAG 59.536 60.000 0.00 0.00 0.00 3.46
2032 2766 1.323271 CGGCACCTAGAGAGCTGGAA 61.323 60.000 0.00 0.00 0.00 3.53
2033 2767 1.754621 CGGCACCTAGAGAGCTGGA 60.755 63.158 0.00 0.00 0.00 3.86
2034 2768 2.811101 CGGCACCTAGAGAGCTGG 59.189 66.667 0.00 0.00 0.00 4.85
2035 2769 1.754621 TCCGGCACCTAGAGAGCTG 60.755 63.158 0.00 0.00 0.00 4.24
2036 2770 1.755008 GTCCGGCACCTAGAGAGCT 60.755 63.158 0.00 0.00 0.00 4.09
2037 2771 1.730451 GAGTCCGGCACCTAGAGAGC 61.730 65.000 0.00 0.00 0.00 4.09
2038 2772 0.106918 AGAGTCCGGCACCTAGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
2039 2773 0.394488 CAGAGTCCGGCACCTAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
2040 2774 2.010582 GCAGAGTCCGGCACCTAGAG 62.011 65.000 0.00 0.00 33.57 2.43
2041 2775 2.052690 GCAGAGTCCGGCACCTAGA 61.053 63.158 0.00 0.00 33.57 2.43
2042 2776 2.496817 GCAGAGTCCGGCACCTAG 59.503 66.667 0.00 0.00 33.57 3.02
2043 2777 3.075005 GGCAGAGTCCGGCACCTA 61.075 66.667 0.00 0.00 35.10 3.08
2051 2785 3.462678 GTCCCTCGGGCAGAGTCC 61.463 72.222 13.58 0.00 45.44 3.85
2052 2786 2.363147 AGTCCCTCGGGCAGAGTC 60.363 66.667 13.58 4.16 45.44 3.36
2053 2787 2.681778 CAGTCCCTCGGGCAGAGT 60.682 66.667 13.58 0.00 45.44 3.24
2054 2788 4.154347 GCAGTCCCTCGGGCAGAG 62.154 72.222 7.75 7.75 46.44 3.35
2061 2795 4.803426 GTGAGCCGCAGTCCCTCG 62.803 72.222 0.00 0.00 0.00 4.63
2062 2796 3.655810 CTGTGAGCCGCAGTCCCTC 62.656 68.421 7.38 0.00 37.23 4.30
2063 2797 3.699894 CTGTGAGCCGCAGTCCCT 61.700 66.667 7.38 0.00 37.23 4.20
2064 2798 2.527951 AATCTGTGAGCCGCAGTCCC 62.528 60.000 13.25 0.00 41.99 4.46
2065 2799 0.674895 AAATCTGTGAGCCGCAGTCC 60.675 55.000 13.25 0.00 41.99 3.85
2066 2800 0.723981 GAAATCTGTGAGCCGCAGTC 59.276 55.000 13.25 3.52 41.99 3.51
2067 2801 0.035317 TGAAATCTGTGAGCCGCAGT 59.965 50.000 13.25 2.07 41.99 4.40
2068 2802 0.445436 GTGAAATCTGTGAGCCGCAG 59.555 55.000 8.85 8.85 42.60 5.18
2069 2803 0.250252 TGTGAAATCTGTGAGCCGCA 60.250 50.000 0.00 0.00 0.00 5.69
2070 2804 0.166814 GTGTGAAATCTGTGAGCCGC 59.833 55.000 0.00 0.00 0.00 6.53
2071 2805 0.798776 GGTGTGAAATCTGTGAGCCG 59.201 55.000 0.00 0.00 0.00 5.52
2072 2806 1.537202 GTGGTGTGAAATCTGTGAGCC 59.463 52.381 0.00 0.00 0.00 4.70
2073 2807 1.537202 GGTGGTGTGAAATCTGTGAGC 59.463 52.381 0.00 0.00 0.00 4.26
2074 2808 2.810274 CTGGTGGTGTGAAATCTGTGAG 59.190 50.000 0.00 0.00 0.00 3.51
2075 2809 2.437651 TCTGGTGGTGTGAAATCTGTGA 59.562 45.455 0.00 0.00 0.00 3.58
2076 2810 2.849942 TCTGGTGGTGTGAAATCTGTG 58.150 47.619 0.00 0.00 0.00 3.66
2077 2811 3.117888 AGTTCTGGTGGTGTGAAATCTGT 60.118 43.478 0.00 0.00 0.00 3.41
2078 2812 3.480470 AGTTCTGGTGGTGTGAAATCTG 58.520 45.455 0.00 0.00 0.00 2.90
2079 2813 3.864789 AGTTCTGGTGGTGTGAAATCT 57.135 42.857 0.00 0.00 0.00 2.40
2080 2814 4.894784 TCTAGTTCTGGTGGTGTGAAATC 58.105 43.478 0.00 0.00 0.00 2.17
2081 2815 4.974645 TCTAGTTCTGGTGGTGTGAAAT 57.025 40.909 0.00 0.00 0.00 2.17
2082 2816 4.504864 CCATCTAGTTCTGGTGGTGTGAAA 60.505 45.833 0.00 0.00 0.00 2.69
2083 2817 3.007940 CCATCTAGTTCTGGTGGTGTGAA 59.992 47.826 0.00 0.00 0.00 3.18
2084 2818 2.567169 CCATCTAGTTCTGGTGGTGTGA 59.433 50.000 0.00 0.00 0.00 3.58
2085 2819 2.303022 ACCATCTAGTTCTGGTGGTGTG 59.697 50.000 11.80 0.00 44.06 3.82
2086 2820 2.567615 GACCATCTAGTTCTGGTGGTGT 59.432 50.000 15.81 0.00 45.70 4.16
2087 2821 2.093447 GGACCATCTAGTTCTGGTGGTG 60.093 54.545 15.81 0.00 45.70 4.17
2088 2822 2.188817 GGACCATCTAGTTCTGGTGGT 58.811 52.381 15.81 0.00 45.70 4.16
2089 2823 2.187958 TGGACCATCTAGTTCTGGTGG 58.812 52.381 15.81 7.12 45.70 4.61
2090 2824 5.614324 TTATGGACCATCTAGTTCTGGTG 57.386 43.478 11.17 0.00 45.70 4.17
2092 2826 7.056635 ACAAATTATGGACCATCTAGTTCTGG 58.943 38.462 11.17 7.06 38.55 3.86
2093 2827 8.511604 AACAAATTATGGACCATCTAGTTCTG 57.488 34.615 11.17 3.57 0.00 3.02
2094 2828 7.775561 GGAACAAATTATGGACCATCTAGTTCT 59.224 37.037 23.09 8.26 33.14 3.01
2095 2829 7.254795 CGGAACAAATTATGGACCATCTAGTTC 60.255 40.741 11.17 16.93 0.00 3.01
2096 2830 6.542370 CGGAACAAATTATGGACCATCTAGTT 59.458 38.462 11.17 9.91 0.00 2.24
2097 2831 6.055588 CGGAACAAATTATGGACCATCTAGT 58.944 40.000 11.17 1.32 0.00 2.57
2098 2832 5.049405 GCGGAACAAATTATGGACCATCTAG 60.049 44.000 11.17 0.67 0.00 2.43
2099 2833 4.819630 GCGGAACAAATTATGGACCATCTA 59.180 41.667 11.17 0.50 0.00 1.98
2100 2834 3.632145 GCGGAACAAATTATGGACCATCT 59.368 43.478 11.17 0.00 0.00 2.90
2101 2835 3.548014 CGCGGAACAAATTATGGACCATC 60.548 47.826 11.17 0.00 0.00 3.51
2102 2836 2.357637 CGCGGAACAAATTATGGACCAT 59.642 45.455 12.67 12.67 0.00 3.55
2103 2837 1.740585 CGCGGAACAAATTATGGACCA 59.259 47.619 0.00 0.00 0.00 4.02
2104 2838 1.741145 ACGCGGAACAAATTATGGACC 59.259 47.619 12.47 0.00 0.00 4.46
2105 2839 3.545426 GCTACGCGGAACAAATTATGGAC 60.545 47.826 12.47 0.00 0.00 4.02
2106 2840 2.610374 GCTACGCGGAACAAATTATGGA 59.390 45.455 12.47 0.00 0.00 3.41
2107 2841 2.353269 TGCTACGCGGAACAAATTATGG 59.647 45.455 12.47 0.00 0.00 2.74
2108 2842 3.607439 CTGCTACGCGGAACAAATTATG 58.393 45.455 12.47 0.00 37.02 1.90
2109 2843 2.031683 GCTGCTACGCGGAACAAATTAT 59.968 45.455 12.47 0.00 37.02 1.28
2110 2844 1.395608 GCTGCTACGCGGAACAAATTA 59.604 47.619 12.47 0.00 37.02 1.40
2111 2845 0.168128 GCTGCTACGCGGAACAAATT 59.832 50.000 12.47 0.00 37.02 1.82
2112 2846 0.673644 AGCTGCTACGCGGAACAAAT 60.674 50.000 12.47 0.00 37.02 2.32
2113 2847 0.038067 TAGCTGCTACGCGGAACAAA 60.038 50.000 12.47 0.00 37.02 2.83
2114 2848 0.457853 CTAGCTGCTACGCGGAACAA 60.458 55.000 12.47 0.00 37.02 2.83
2115 2849 1.138883 CTAGCTGCTACGCGGAACA 59.861 57.895 12.47 1.34 37.02 3.18
2116 2850 1.589196 CCTAGCTGCTACGCGGAAC 60.589 63.158 12.47 0.00 37.02 3.62
2117 2851 2.805546 CCTAGCTGCTACGCGGAA 59.194 61.111 12.47 0.00 37.02 4.30
2118 2852 3.900892 GCCTAGCTGCTACGCGGA 61.901 66.667 12.47 0.00 37.02 5.54
2119 2853 4.951963 GGCCTAGCTGCTACGCGG 62.952 72.222 19.50 14.43 38.08 6.46
2120 2854 3.832720 GAGGCCTAGCTGCTACGCG 62.833 68.421 19.50 3.53 34.40 6.01
2121 2855 2.028337 GAGGCCTAGCTGCTACGC 59.972 66.667 18.49 18.49 0.00 4.42
2122 2856 1.830408 AGGAGGCCTAGCTGCTACG 60.830 63.158 4.42 3.22 28.47 3.51
2123 2857 1.745264 CAGGAGGCCTAGCTGCTAC 59.255 63.158 4.42 0.00 29.64 3.58
2124 2858 1.458398 CCAGGAGGCCTAGCTGCTA 60.458 63.158 4.42 9.34 29.64 3.49
2125 2859 2.767496 CCAGGAGGCCTAGCTGCT 60.767 66.667 4.42 7.57 29.64 4.24
2142 2876 4.570874 GGGAAGAGGCATCCGGGC 62.571 72.222 0.00 0.00 43.80 6.13
2143 2877 2.330924 GAAGGGAAGAGGCATCCGGG 62.331 65.000 0.00 0.00 37.87 5.73
2144 2878 1.147153 GAAGGGAAGAGGCATCCGG 59.853 63.158 0.00 0.00 37.87 5.14
2145 2879 1.147153 GGAAGGGAAGAGGCATCCG 59.853 63.158 0.00 0.00 37.87 4.18
2146 2880 1.281925 TGGGAAGGGAAGAGGCATCC 61.282 60.000 0.00 0.00 36.16 3.51
2147 2881 0.182299 CTGGGAAGGGAAGAGGCATC 59.818 60.000 0.00 0.00 0.00 3.91
2148 2882 0.253347 TCTGGGAAGGGAAGAGGCAT 60.253 55.000 0.00 0.00 0.00 4.40
2149 2883 0.253347 ATCTGGGAAGGGAAGAGGCA 60.253 55.000 0.00 0.00 0.00 4.75
2150 2884 1.696884 CTATCTGGGAAGGGAAGAGGC 59.303 57.143 0.00 0.00 0.00 4.70
2151 2885 1.696884 GCTATCTGGGAAGGGAAGAGG 59.303 57.143 0.00 0.00 0.00 3.69
2152 2886 1.696884 GGCTATCTGGGAAGGGAAGAG 59.303 57.143 0.00 0.00 0.00 2.85
2153 2887 1.695989 GGGCTATCTGGGAAGGGAAGA 60.696 57.143 0.00 0.00 0.00 2.87
2154 2888 0.767998 GGGCTATCTGGGAAGGGAAG 59.232 60.000 0.00 0.00 0.00 3.46
2155 2889 0.045623 TGGGCTATCTGGGAAGGGAA 59.954 55.000 0.00 0.00 0.00 3.97
2156 2890 0.271927 ATGGGCTATCTGGGAAGGGA 59.728 55.000 0.00 0.00 0.00 4.20
2157 2891 0.695347 GATGGGCTATCTGGGAAGGG 59.305 60.000 3.27 0.00 32.83 3.95
2158 2892 0.322975 CGATGGGCTATCTGGGAAGG 59.677 60.000 9.28 0.00 33.44 3.46
2159 2893 0.322975 CCGATGGGCTATCTGGGAAG 59.677 60.000 9.28 0.00 33.44 3.46
2160 2894 2.452116 CCGATGGGCTATCTGGGAA 58.548 57.895 9.28 0.00 33.44 3.97
2161 2895 4.215370 CCGATGGGCTATCTGGGA 57.785 61.111 9.28 0.00 33.44 4.37
2171 2905 1.926426 AAAGGAGGAAGGCCGATGGG 61.926 60.000 0.00 0.00 39.96 4.00
2172 2906 0.464554 GAAAGGAGGAAGGCCGATGG 60.465 60.000 0.00 0.00 39.96 3.51
2173 2907 0.464554 GGAAAGGAGGAAGGCCGATG 60.465 60.000 0.00 0.00 39.96 3.84
2174 2908 1.915983 GGAAAGGAGGAAGGCCGAT 59.084 57.895 0.00 0.00 39.96 4.18
2175 2909 2.656069 CGGAAAGGAGGAAGGCCGA 61.656 63.158 0.00 0.00 41.11 5.54
2176 2910 2.125106 CGGAAAGGAGGAAGGCCG 60.125 66.667 0.00 0.00 39.96 6.13
2177 2911 2.272471 CCGGAAAGGAGGAAGGCC 59.728 66.667 0.00 0.00 45.00 5.19
2178 2912 3.400188 TCCGGAAAGGAGGAAGGC 58.600 61.111 0.00 0.00 45.98 4.35
2186 2920 5.126067 ACATGATACATTCTTCCGGAAAGG 58.874 41.667 19.39 8.74 37.49 3.11
2187 2921 6.073548 GCTACATGATACATTCTTCCGGAAAG 60.074 42.308 19.39 12.37 37.49 2.62
2188 2922 5.758296 GCTACATGATACATTCTTCCGGAAA 59.242 40.000 19.39 4.42 37.49 3.13
2189 2923 5.297547 GCTACATGATACATTCTTCCGGAA 58.702 41.667 17.73 17.73 38.41 4.30
2190 2924 4.883083 GCTACATGATACATTCTTCCGGA 58.117 43.478 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.