>input_sequence_86838
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------------------------------------------------------------------------------AT
GAGCGACTGCATGTGGTTGCGCGCGACGGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCGG
CGGCGTCGAAGCGGGGGAGGTCGCAGCCGTGGGGCTGCCACCGCCACCGGAGGATGGAGTCGATCCCGGGCTTGCCGTAC
TTCATGCAGTCCTGCCGGGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAG-----------------------------
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>chr6D_1_TraesCS6D01G268900
ATTTTCCAACCTAAACTCCAAGCAAAGAGACCTGTATCGTATAACACCCTGCATCCAAAACCATTCCGTTTGTGCAATTA
CAGTTAGGGAGAAAGAACAACCAAGTAGCTGGGCGCAAGTGCAAATCATGTCAGCAAATGCAGCAGCAGCTCGCTCCAAG
CGTCGACGGGGCCGGGCAAGCACCAGTGCACGCAGTCGATGCCGAAGCCGACCTTCTCGTGCGGCCAGTGCCCGTACTGC
CCGGGGTGCCCGTCGCCCCTCATCTGCATCATCTCGCTCACGTCCATCAGCACGAACCTCC------------CCGCCGC
CGCCTCCGCCGTCGCGGCCCGGAACTCCTCCACCTGCGCGGCGTGGAACGCG----------------------------
--------------------------------------------------------------------GCCTCGGTCTCC
GGAAGGCTGCTCTCGTTGCTCAGCAGGGGCCCCGTCCTCAGGCAGTTGCCGCCGTCGTACCACTTGCCGTTCTCGTAGTG
CGGGGGCGCCACCGTCCGGACGACCACCCGGCCGCGGAACCCGGCGAGCGCCCTGAGCGCGGTCCGGAACGACGCGCGCA
TCGCGTAGTGCGGCGCCACGGCGGTGGCGTTGTGCTTGGCCTGGCAGCCGTCGACGTTGGCGCAGCCGAGGAGGCGGCCG
CCCTCGTAGAGCACGGTGGGGCGGGTGAACCACTTGGCGCCGTTGAGGACGACGTAGTCGTAGCCGGCGACGTCGCGGCT
CCACTCCGGGTCCGGCTCGTCCAGGTACACGTTGTGCGGGTCCATGAACTGCTGCCCGCCGGCGCGCGTCAGGTTCCACC
GCACCAGGAACGGCGTCCAGAACACGCACACCGTGAAGCCGTGCTCCCGGTAGTGGTACTTGCGCGTGCAGTGCACGCAG
TCCTTGGGCTCGATCTCCCTCGGCTGCTCCACCTGCATGCCCATGCGCGCGCCGGCCGGCAACCAAGAAATCAACAC---
-------GCGAGCTCATGATGGCAACGCAATGGTGGTCGATCGAGTGGAAGCGGGCATGTACCTCGGCGAGCAGGCACAT
GAGCGACTGCATGTGGTTGCGCGCGACGGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCGG
CGGCGTCGAAGCGGGGGAGGTCGCAGCCGTGGGGCTGCCACCGCCACCGGAGGATGGAGTCGATCCCGGGCTTGCCGTAC
TTCATGCAGTCCTGCCGGGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAGT----------------------------
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---AGGGCGCGGCCGGGTCGGGCACCCACTCGCCCTTGGCCACGTCGCACGCCGCTCCGGCATTGCTGTCGCTCGCGCGG
GATCCCGA------TCCCGCCGCGGCAGTGGAGGAGGAGGACGGGGTGGCGGGCACGGCGACGAGCAACTGCTCGGTGTA
GAGCGACGAGTAGTTGGACGCCGTGAAGGCGACGAGCAGGAGGATGAGGAGCAGCCCGCTGGTGGAGGCTGCCCTCCGGA
CGGCCTGGTTGTTGGGCTTCATTGCGTCCCAG--------GCTCACA-GGGGAGGCGGACTCAGTTGATGGCTTCATTCT
TGTAGGTCTCACCG--------GGAGATCTGGAATAATTTGCAATGCTGTCTCACTGGACGAACATGTGCCACTTGATCG
AGCACGTAGCTGACTACTTGATGGAAAGTCAACACTTTGAGTACTTTTTTCCCCCTGACGAACGACGTGCTCTCCTCCAC
CGAGATAGCCA-TCCGTCTTTCCTGAAGAATGTATCAGAGCGTATCGGATCGACTAGCTGGAGTACTGTAAATGGGAAAC
ATATCTAATCTAGCGTCTCCGGCGACGTCTCTCCGTTCTTCTCTCTCGCCTCGCTTGCATTATCGACCATCTCTCCTCAC
ATCACTCCCGCCTCGCTCTTTCTCCTGTTCCCTCCATTCCATAGTTTAGTGCACTTGCACTTTTCGAGTTTTAAGTTTGA
ATGTAAATTTAATGGTATAATTTTTTGCTTCCGCCGCAATCGCACATGTTAGTTAAATTTATGATTAAATTTAAATCTTA
AAAAATGCAAACGCACTGCATTATGAAATGAAGATCATAATATTCTTCCAGCTCTCTAGGTGCCGGACTCTGCCCGAGGG
ACTGCGGCTCACAGATTTCACACCACCAGAACTAGATGGTCCATAATTTGTTCCGCGTAGCAGCTAGGCCTCCTGGCCCG
GATGCCTCTTCCCTTCCCAGATAGCCCATCGGCCTTCCTCCTTTCCGGAAGAATGTATCATGTAGC
>chr6A_41
----------------------------------------ATAACACGCTGCATCGAAATCCATTCCGTTTGTGCAACTA
CAATTAGGACGAATAAAAATTAGCAGGA-----------TGCCAATCATGTCAGCAAATGGAGCAGCACCTCGCTCCAAG
CGTCGACGGGGCCGGGCAGGCACCAGTGCACGCAGTCGATGCCGAAGCCGACCTTCTCGTGCGGCCAGTGCCCGTACTGC
CCGGGGTGCCCGTCGCCCCTCATCTGCATCATCTCGCTCACGTCCATCAGCACGAACCTCC------------CCGCCGC
C---------GACGCGGCCCGGAACTCCTCCACCTGCGCAGCGTGGAACGCGACCTCGGTCTCCGGAGGACTGCTCTCGT
CCATCAGCACGAACCTCCCCGCCGCCGACGCGGTCCAGAACTCCTCCACCTGCGCGACGTGAAACGCGGCCTCGGTCTCC
GGTAGACTGGTCTCGTTGCTCCGCATGGGCCCCGTCCTCAGGCAGTTTCCTCCGTCGTACCATTTGCCGTTCTCGTAGTG
CGGGGGCGCCACCGTCCGGACGACCACCCGGCCGCGGAACCCGGCGAGCGCCCGGAGCGCGGTCCGGAACGACGCGCGCA
CCGCGTAGTGCGGGGCCACGGCGGTGGCGTTGTACTTGGCCTCGCAGCCGTCGAGGTTGGCGCAGCCGAGGAGGCGGCCG
CCCTCGTAGAGCACGGTGGGGCGGGTGAACCACTTGGCGCCGTTGAGGACGACGTAGTCGTAGCCAGCGACGTCGCGGCT
CCACTCCGGGTCCGGCTCGTCCAGGTACACGTTGTGCGGGTCCATGAACTGCTGCCCGCCGGCGCGCGTCAGGTTCCACC
GCACCAGGAACGGCGTCCAGAACACGCACACCGTGAAGTCGTGCTCCCGGTAGTGGTACTTGCGCGTGCAGTGCACGCAG
TCCTTGGGCTCGATCTCCCTCGGGTGCTCCACCTGCATGCACATGCGCGCGCCGGGCGGTAACCGAGAAATCAACACACG
CGATCGAGCGAGCTCAAGATGGCAACGCAACGGTGATCGATCTAGTGGAAGTGGGCATGTACCTCGGCGAGCAGGCACAT
GAGCGACTGCATGTGGTTGCGCGCGACGGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCCG
CGGCGTCGAAGCGGGGGAGGTCGCAGCCGTGGGGTTGCCACCGCCACCGGAGGATGGACTCGATACCGGGCTTGCCGTAC
TTCATGCAGTCCTGCCGAGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAGT----------------------------
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---AGGGCGCGGCCGGGTCGGGCACCCACTCGCCCTTGGCCACGTCGCACGCCACTCCGGCATTGCTGTCGCTCGCGCGG
------GA------TCCCGCCGCGGCAGTGGAGGAGG---CCAGGATGACGGGCACGCCGACGAGCAACTGCTCGGTGTA
GAGCGCCGAGTAGTTGGACGCCGTGAAGGCGACGAGCAGGAGGATGAGGAGCAGCCCGCTGGTGGAAGCTGCCCTCCGGA
CGACGTGGTTGTTGGGCTTCATTGCATCCCAAAGACCCAAACTCACCGGG--AGGCAGATTCAGTTCATGG-TTCACTCT
TGTAGATCTCACCG--------GGAGATCTGGAATAATTT----TGCTGTCTTGCTGGACGAACATGTGCCACTCGGTCG
AGCACGTAGCTGACTACTTGA-GGAAAGTCAACACTTTGAGTACTTTTCTCCAA--GACGAACGACGTGCTCTGC-CCAT
CGAGATAGCCATTCCGTCTTTCCTGAAAAACGTATCAGAGCGTATCGGATCGACTAGCTGTAGTACTACAAACGGGAA-C
ATATCTAATCTAGCGTCTCCTGCAAGGGCTCTCCATTCTTCTCTCGTGCCTCCCTT------------------------
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>chr6A_42
-----------------------------------------TAACACGCTGCATCCAAATCCATTCCGTTTGTGCAACTA
CAATTAGGACGAAGAAAAATTAGCAGGA-----------TGCCAATCATGTCAGTAAATGGAGCAGCACCTCGCTCCAAG
CGTCGACGGGGCCGGGCAAGCACCAGTGCACGCAGTCGATGCCGAAGCCGACCTTCTCGTGCGGCCAGTGCCCGTACTGT
CCGGGGTGCGCGTCGCCCCTCATCTGCATCATCTCGCTCACGTCCATCAGCCCGAACCGCCCCTCCGAGGCCGCCGCCGC
C---------GACGCGGCCCGGAACTCCTCCACCTGCGC-----------------------------------------
-------------------------------------------------------GACGTGAAACGCAGCCTCGGTCTCC
GGTAGGCTGGTCTCGTTGCTCCGCATGGGCCCCGTCCTCAGGCAGTTTCCTCCGTCGTCCCACTTCCCGTTCTCGTAGTG
CGGGGGCGCCACCGTCCGGACGACCACCCGGCCGCGGAACCCGGCGAGCGCCCGGAGCGCGGTCCGGAACGACGCGCGCA
CCGCGTAGTGCGGGGCCACGGCGGTGGCGTTGTGCTTGGCCTCGCAGCTGTCGACGTTGGCGCAGCCGAGGAGGCGGCCG
CCCTCGTAGAGCACGGTGGGGCGGGTGAACCACTTGGCGCCGTTGAGGACGACGTAGTCGTAGCCGGCGACGTCGCGGCT
CCACTCCGGGTCCGGCTCGTCCAGGTACAAGTTCTGCGGGTCCATGAACTTCTGCCCGCCGGCGTGCGTCACGTTCCACC
GCACCAGGAACGGCGTCCAGAACACGCACACCGTGAAGTCGTGCTCCCGGTAATGGTACTTGCGCGTGCAGTGCACGCAG
TCCTTGGGCTCGATCTCCCTCGGGTGCTCCACCTGCATGCACATGCGCGCGCCGGGCGGTAACCGAGAAATCAACACACG
CGATCGAGCGAGCTCAAGATGGCAACGCAACGGTGATCGATCTAGTGGAAGTGGGCATGTACCTCGGCGAGCAGGCACAT
GAGCGACTGCATGTGGTTGCGCGCGACGGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCCG
CCGCGTCGAAGCGGGGGAGGTCGCAGCCGTGGGGCTGCCACCGCCACCGGATGATGGACTCGATCCCGGGCTTGCCGTAC
ATCATGCAGTCCTGCCGGGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAGT----------------------------
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---AGGGCGCGACCGGGTCGGGCACCCATTCGCCCCTCGCCACGTCGCACGCCAGTCCGGCGTTGCCATCGCTCGCGCGG
------GA------TCCCGCCGTGGCAGAGGAGTAGC---CCGGGGTGGCGGGCACGCCGACGAGCAACTGCTCGGTGTA
GAGCGACGAGTAGTTGGACGCCGTGAAGGCGACGAGCAGGAGGATGAGGAGCAGCCCGCTGGTGGAAGCTGCCCTCCGGA
CGGCCTGGTTGTTGGGTTTCATTGCGTCCCAG--------GCTCACA-GG--AGGCAGATTCAGTTGATGGCTTCATTCT
TGTAGGTCTCACGGCTCTCACCGGAGATATGGAATAATTTGCAATGCTGTCTCGCCGGACGAACATGTGCCACTTGATGG
AGCACGTACCTGACTACTTAT--GAAAGTCAACACTTTGAGTACTTCTTTTCCCCTGACTAACGACGTGCTCTCC-CCAC
CGAGATAGCCAT-CCGTCTTTCCTGAATAAT-------------------------------------------------
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>chr6B_105
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------------------------GTAGCCGGGTGCAAGTGCAAATCATGTCAGCAAATGCAGCAGCAGTTCGCTCCAAG
CGTCGACGGGCCCGGGCAGGCACCAGTGCACGCAGTCGATGCCGAAGCCGACCTTCTCGTGTGGCCAGTGCCCGTACTGC
CCGGGGTGCCCGTCGCCCCTCATTTGCATCATCTCGCTCACGTCCATCAGCACGAACCTCCCCGCC---GCCGCCTCCGC
C---------GTCGCGGCCCGGAACTCCTCCACCTGCGCGG---------------------------------------
---------------------------------------------------------CGTGGAACGCGCCCTCGGTCTCC
GGAAGACTGCTCTCGTTGTTCAGCAGGGGCCCCGTCCTCAGGCAGTTGCCGCCGTCGTACCACTTGCCGTTCTCGTAGTG
CGGGGGCGCCACCGTCCGGACGACCACCCGGCCGCGGAACCCCGCGAGCGCCCGGAGCGCGGTCCGGAACGACGCGCGCA
CCGCGTAGTGCGGCGACACGGCGGTGGCGTTGTGCTTGGCCACGCAGCCGTCGACGTTTGCGCAGCCGAGGAGGCGGCCG
CCCTCGTAGAGCACGGTGGGGCGGGTGAACCACTTGGCGCCGTTGAGGACGACGTAGTCGTAGCCGGCGACGTCGCGGCT
CCACTCCGGGTCCGGCTCGTCCAGGTACACGTTGTGCGGGTCCATGAACTGCTGCCCGCCGGCGCGCGTCAGGTTCCACC
GCACCAGGAACGGCGTCCAGAACACGCACACCGTGAAGTCGTGCTCCCGGTAGTGGTACTTGCGCGTGCAGTGCACGCAG
TCCTTGGGCTCGATCTCCCGCGGCTGCTCCACCTGCATGCCCATGCGCGCGCCGGGCGGCAACCAGGAAATCAACACACG
CGATCGAGCGAGCTCATGATGGCAACGCAATGGTGGTCGATCGAGTGGAGGTGGACATGTACCTTAGCGAGCAGGCACAT
GAGCGACTGCATGTGGTTGCGCGCGACAGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCGG
CGGCGTCGAAGCGGGGGAGGTCGCAGCCGTGGGGCTGCCACCGCCACCGGAGGATGGACTCGATCCCGGGCTTGCCGTAC
TTCATGCAGTCCTGCCGGGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAGTCGTAGTAGCCGGAAACGGGGAACGGTGG
GCCGTCCCTCGAATCAGATTCAGGAACAAAGGTCGATTCGGTAAGATTCGATGTGGATTCGGTGTTTCCGCAGTTGGATC
GTCGATTCAGGTTCGGCGACTCGACAGTCTTGGTTCTTGAATCGATCGAGTAAGCAAAAGGTCAGCCATATCAATCACGA
ACTCCTCGTTTTAATTTCTGCCCCGTTCTTTTCCACTCCTCTAAATAACTCCTTATTCTGCTCTCCAATTACTCCAAGGC
TGCTAATAAATTTTCCATTAGGAATGAGATAATATATTTTAGTCTTCATGAATCGACGATGCAGCCAGTTCCCTGTATAA
GTACTCCCTCGGTCCCTCCCAGCCAGTTGTTCCCCGCACCCGTAAAGATTCACGTTCCTCGTTCCATGGTACCGTACCGG
ATTCATCGTACCGGAATTGATTGGATCGCGTTTCCGTTTTAGAAAAATCGTTCTAGAGATGTATACCCTCACTGTACCCT
ATTTTTTCCGGCCCCCGACTCTCGTCCCCCGTTCCCGTTCCTCGTTCCCATCGTACCGAAAACATGGCAACTATGGGTGT
AGTAGGGCACGGCCGGGTCGGGCACCCACTCGCCCCTCGCCACGTCGCACGCCACTCCGGCATTGCTGTCGCTCGCGCGG
------GATCCCGTTCCCGCCGCGGCAGAGGAGGAGGAGGCCGGGGTGGCGGGCACCGCGACGAGCAGCTGCTCAGTGTA
GAGCGACGAGTAGTTGGACGCCGTGAAGGCGACGAGCAGGAGGATGAGGAGCAACCCGCTGGTGGAGGCTGCCCTCCGCA
CGGCCTGGTTGTTGGGCTTCGTTGCATCCCAG--------ACTCACAGGG--AGGCAGATTCAATTAATGGCTTCATTCT
TGTAGATCACACCG--------GGAGATCTGGAATAATTTGCATTGCTGTCTCGCTGGACGAACATGTGCCACTTGATCG
AGCACGTAGCTGACTACTTGA-GGAAAGTCAACACTTGAGTAC--TTTTCCCCAATGACAAACGACGTGCTCTCG-CCA-
--------CCATTCCTTCTTTCCTGAAGAATGTATCAGAGCGTATCGGATCGCCTAGCTGGAGTACTACAAATGGGAAAC
ATGTCTAATCCAGCGTCTCCTGCAACGTCTCTCCGTTCTTCT--------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------S-----------------S--
--S-----SS---SS--S-SSSSS-----S---S----------------------------------------------
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-SSSSSSSSS----------------------------------------------------------------------
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-----------------------------------------------------S--------------------------
S-----------------------------------------S-------------------------------------
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-------------------------------------------------------S------------------------
---------------------------------------------------S----------------------------
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-----------------------------------------------------S--------------------------
SSSSSS----------------------------------S---------------------------------------
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--------------------------------------------------SS----S--S--------------------
-----------------------------------------------------S--------------------------
---------------------S-----------------------------------------------------S----
-------------------------------------------------------------------SS-----------
--------------------S--S---------------------SS-----S---SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1092
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--------------------------------GTGGTCGATCGAGTGGAAGC----------------------------
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>reverse_2801
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ACTGCGGCTCACAGATTTCA------------------------------------------------------------
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