Multiple sequence alignment - TraesCS6D01G264500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G264500 chr6D 100.000 2566 0 0 1 2566 373062624 373065189 0.000000e+00 4739
1 TraesCS6D01G264500 chr6D 82.591 247 40 2 55 299 24407412 24407167 5.560000e-52 215
2 TraesCS6D01G264500 chr6A 95.095 1264 44 8 653 1903 515289074 515290332 0.000000e+00 1975
3 TraesCS6D01G264500 chr6A 92.370 616 43 2 1949 2564 515290331 515290942 0.000000e+00 874
4 TraesCS6D01G264500 chr6A 87.011 639 79 2 19 654 515288141 515288778 0.000000e+00 717
5 TraesCS6D01G264500 chr6A 80.132 604 103 13 892 1488 528999118 528998525 3.920000e-118 435
6 TraesCS6D01G264500 chr6B 86.281 1261 113 23 775 2007 560973108 560974336 0.000000e+00 1315
7 TraesCS6D01G264500 chr6B 83.377 379 61 2 3 380 174664441 174664064 1.460000e-92 350
8 TraesCS6D01G264500 chr6B 91.628 215 17 1 567 780 558733386 558733172 1.930000e-76 296
9 TraesCS6D01G264500 chr6B 91.628 215 17 1 567 780 558815983 558815769 1.930000e-76 296
10 TraesCS6D01G264500 chr2B 85.519 366 49 3 3 368 717341737 717342098 1.860000e-101 379
11 TraesCS6D01G264500 chr2B 82.700 237 41 0 3 239 92060190 92059954 7.190000e-51 211
12 TraesCS6D01G264500 chr7D 84.615 364 50 5 7 368 553823934 553824293 8.730000e-95 357
13 TraesCS6D01G264500 chr5B 82.320 362 64 0 7 368 41382799 41383160 5.330000e-82 315
14 TraesCS6D01G264500 chrUn 91.628 215 17 1 567 780 459911984 459911770 1.930000e-76 296
15 TraesCS6D01G264500 chrUn 91.628 215 17 1 567 780 466368566 466368780 1.930000e-76 296
16 TraesCS6D01G264500 chr1B 81.543 363 57 8 20 378 342109317 342108961 8.980000e-75 291
17 TraesCS6D01G264500 chr2A 79.112 383 69 9 2 380 751733618 751733243 1.180000e-63 254
18 TraesCS6D01G264500 chr3D 88.889 180 19 1 380 558 85585441 85585620 1.200000e-53 220
19 TraesCS6D01G264500 chr4D 87.432 183 19 3 380 558 93603070 93602888 9.310000e-50 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G264500 chr6D 373062624 373065189 2565 False 4739.000000 4739 100.000 1 2566 1 chr6D.!!$F1 2565
1 TraesCS6D01G264500 chr6A 515288141 515290942 2801 False 1188.666667 1975 91.492 19 2564 3 chr6A.!!$F1 2545
2 TraesCS6D01G264500 chr6A 528998525 528999118 593 True 435.000000 435 80.132 892 1488 1 chr6A.!!$R1 596
3 TraesCS6D01G264500 chr6B 560973108 560974336 1228 False 1315.000000 1315 86.281 775 2007 1 chr6B.!!$F1 1232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 456 0.340558 TAGGGGAAACGGATGGAGGA 59.659 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1925 0.248289 TCCCTTTCGTGATTCGGTCC 59.752 55.0 0.0 0.0 40.32 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.078837 TCCACGGCTTCCAATTTAAGAC 58.921 45.455 2.17 0.00 0.00 3.01
142 143 1.253100 CATTTAGTTTGGGCGGTGGT 58.747 50.000 0.00 0.00 0.00 4.16
150 151 2.359478 GGGCGGTGGTGGTAGTTG 60.359 66.667 0.00 0.00 0.00 3.16
182 183 4.754667 GTCCCCAAGGCGGACGAC 62.755 72.222 9.89 0.00 40.46 4.34
208 209 4.676586 GCGTGCCCGTTCGTTTGG 62.677 66.667 0.00 0.00 36.15 3.28
229 230 3.518381 TCCGTGTGGACATAAACCG 57.482 52.632 0.00 0.00 40.17 4.44
230 231 0.967662 TCCGTGTGGACATAAACCGA 59.032 50.000 0.00 0.00 40.17 4.69
231 232 1.067425 TCCGTGTGGACATAAACCGAG 60.067 52.381 0.00 0.00 40.17 4.63
232 233 0.719465 CGTGTGGACATAAACCGAGC 59.281 55.000 0.00 0.00 0.00 5.03
233 234 0.719465 GTGTGGACATAAACCGAGCG 59.281 55.000 0.00 0.00 0.00 5.03
239 240 1.004927 GACATAAACCGAGCGCATGTC 60.005 52.381 11.47 14.38 38.88 3.06
242 243 1.358725 TAAACCGAGCGCATGTCTGC 61.359 55.000 11.47 0.00 45.31 4.26
255 256 0.893270 TGTCTGCGTTGGAAATGGGG 60.893 55.000 0.00 0.00 32.13 4.96
262 263 3.895820 TTGGAAATGGGGTGGGCCG 62.896 63.158 0.00 0.00 34.97 6.13
277 278 2.902846 CCGGACGCCAAACCAACA 60.903 61.111 0.00 0.00 0.00 3.33
294 295 3.381272 CCAACATAATTTGAGGATGCGGT 59.619 43.478 0.00 0.00 0.00 5.68
326 327 2.349817 GCCGTGTCATCTGTCTGTTTTG 60.350 50.000 0.00 0.00 0.00 2.44
327 328 3.130633 CCGTGTCATCTGTCTGTTTTGA 58.869 45.455 0.00 0.00 0.00 2.69
328 329 3.748048 CCGTGTCATCTGTCTGTTTTGAT 59.252 43.478 0.00 0.00 0.00 2.57
335 336 4.811555 TCTGTCTGTTTTGATCCAAACG 57.188 40.909 15.40 11.11 32.79 3.60
339 340 3.314080 GTCTGTTTTGATCCAAACGGACA 59.686 43.478 36.28 18.19 38.71 4.02
345 346 4.973055 TCCAAACGGACACGGGCG 62.973 66.667 0.00 0.00 46.48 6.13
354 355 1.440060 GACACGGGCGGACATGATA 59.560 57.895 0.00 0.00 0.00 2.15
368 369 2.011741 ATGATAGGGTCGCGCGTTGA 62.012 55.000 30.98 7.84 0.00 3.18
369 370 1.299926 GATAGGGTCGCGCGTTGAT 60.300 57.895 30.98 16.45 0.00 2.57
371 372 2.971428 ATAGGGTCGCGCGTTGATGG 62.971 60.000 30.98 0.00 0.00 3.51
384 385 2.102578 GTTGATGGTGGCCTAAAGCAT 58.897 47.619 3.32 4.91 46.50 3.79
389 390 1.322442 GGTGGCCTAAAGCATGATCC 58.678 55.000 3.32 0.00 46.50 3.36
390 391 1.410083 GGTGGCCTAAAGCATGATCCA 60.410 52.381 3.32 0.00 46.50 3.41
404 405 2.995283 TGATCCATCTGGTTCTTGCTG 58.005 47.619 8.39 0.00 35.47 4.41
445 446 9.903682 GTTCTTACAGTTTATTTTAGGGGAAAC 57.096 33.333 0.00 0.00 33.01 2.78
446 447 8.326680 TCTTACAGTTTATTTTAGGGGAAACG 57.673 34.615 0.00 0.00 36.98 3.60
455 456 0.340558 TAGGGGAAACGGATGGAGGA 59.659 55.000 0.00 0.00 0.00 3.71
458 459 1.680338 GGGAAACGGATGGAGGAATG 58.320 55.000 0.00 0.00 0.00 2.67
463 464 1.274703 ACGGATGGAGGAATGGCTGT 61.275 55.000 0.00 0.00 0.00 4.40
537 538 0.466124 GGGAGCACAGATGGGAGTAC 59.534 60.000 0.00 0.00 0.00 2.73
552 556 2.045131 GTACGACTCGGGAGCAGGT 61.045 63.158 2.98 0.00 0.00 4.00
558 562 2.284331 TCGGGAGCAGGTAAGCCA 60.284 61.111 0.00 0.00 37.19 4.75
569 573 2.102578 AGGTAAGCCACATCCATTTGC 58.897 47.619 0.00 0.00 37.19 3.68
624 628 7.776030 ACATTCCGTAATAATATGGTGGAAACA 59.224 33.333 5.01 0.00 39.00 2.83
626 630 7.127012 TCCGTAATAATATGGTGGAAACAGA 57.873 36.000 0.00 0.00 44.46 3.41
644 648 8.560374 GGAAACAGAAACATATGCTATACCTTC 58.440 37.037 1.58 0.00 0.00 3.46
645 649 7.715265 AACAGAAACATATGCTATACCTTCG 57.285 36.000 1.58 0.00 0.00 3.79
657 661 7.392494 TGCTATACCTTCGTTATAGATCCTG 57.608 40.000 1.38 0.00 0.00 3.86
658 662 7.173032 TGCTATACCTTCGTTATAGATCCTGA 58.827 38.462 1.38 0.00 0.00 3.86
659 663 7.120873 TGCTATACCTTCGTTATAGATCCTGAC 59.879 40.741 1.38 0.00 0.00 3.51
661 665 3.568853 ACCTTCGTTATAGATCCTGACGG 59.431 47.826 9.39 0.84 34.72 4.79
662 666 3.566523 CTTCGTTATAGATCCTGACGGC 58.433 50.000 9.39 0.00 34.72 5.68
737 1038 2.141517 GATCTGATGGCTGTTGATCGG 58.858 52.381 0.00 0.00 0.00 4.18
753 1054 2.303163 TCGGGAAATGGTATGACGTG 57.697 50.000 0.00 0.00 0.00 4.49
769 1070 1.271446 CGTGCATATCTGACTCGCCG 61.271 60.000 0.00 0.00 0.00 6.46
1307 1639 1.279025 GGTGGCCCATCTCCCAAGTA 61.279 60.000 0.00 0.00 31.90 2.24
1326 1658 0.986019 ACATACCCGAGGGATGCCAA 60.986 55.000 16.26 0.00 38.96 4.52
1352 1684 2.384828 TGTATGCGGATGACTACCACT 58.615 47.619 0.00 0.00 0.00 4.00
1469 1803 4.960938 TGAAGTTCAGCAGTGTGATAACT 58.039 39.130 0.08 0.00 0.00 2.24
1661 1996 8.603242 AAAAGCTACTAGAAGAACAAATCGAA 57.397 30.769 0.00 0.00 0.00 3.71
1669 2004 5.738370 AGAAGAACAAATCGAAGTTGAACG 58.262 37.500 16.58 0.00 0.00 3.95
1856 2195 8.651389 AGCCATGCTAGTGTAGAATATTTCTTA 58.349 33.333 0.00 0.00 37.98 2.10
1904 2243 7.120726 ACAGAAGTCGGGGAAATTTTACAATAG 59.879 37.037 0.00 0.00 0.00 1.73
1984 2323 9.747898 TTCAACCCAAATATTACTACATCACTT 57.252 29.630 0.00 0.00 0.00 3.16
2152 2491 8.981724 AGAAATGACACATGAAAAGATGAATG 57.018 30.769 0.00 0.00 0.00 2.67
2153 2492 7.544566 AGAAATGACACATGAAAAGATGAATGC 59.455 33.333 0.00 0.00 0.00 3.56
2154 2493 5.063180 TGACACATGAAAAGATGAATGCC 57.937 39.130 0.00 0.00 0.00 4.40
2160 2499 5.479375 ACATGAAAAGATGAATGCCTGAAGT 59.521 36.000 0.00 0.00 0.00 3.01
2251 2590 7.441157 TGACGAGCTTTAATAAATAGACCATGG 59.559 37.037 11.19 11.19 0.00 3.66
2252 2591 6.710744 ACGAGCTTTAATAAATAGACCATGGG 59.289 38.462 18.09 0.00 0.00 4.00
2253 2592 6.710744 CGAGCTTTAATAAATAGACCATGGGT 59.289 38.462 18.09 5.30 39.44 4.51
2274 2613 0.961019 GAACCAACAGATGCTTGGCA 59.039 50.000 11.62 0.00 41.85 4.92
2285 2624 4.402155 CAGATGCTTGGCAAGGGTTTATAA 59.598 41.667 27.25 0.00 43.62 0.98
2336 2675 1.608109 TGATGCATGCACGACTTTTGT 59.392 42.857 25.37 2.84 0.00 2.83
2378 2717 7.364200 AGAAGATTCATACTGATGCTACGTAC 58.636 38.462 0.00 0.00 32.62 3.67
2383 2722 0.179145 ACTGATGCTACGTACCGTGC 60.179 55.000 0.00 0.00 41.39 5.34
2403 2742 2.237066 GCCGTTGCTTTGCCACAAC 61.237 57.895 0.00 0.00 42.15 3.32
2419 2758 0.951040 CAACTGCTCCTCGGTTCACC 60.951 60.000 0.00 0.00 42.17 4.02
2500 2839 2.349438 GCTTACCACATGTGTCACGTTG 60.349 50.000 23.79 9.51 0.00 4.10
2514 2853 7.476667 TGTGTCACGTTGTAAAATCTTTTCAT 58.523 30.769 0.00 0.00 0.00 2.57
2545 2884 1.002900 CGTGTTGGTGATGGTTGTGTC 60.003 52.381 0.00 0.00 0.00 3.67
2555 2894 0.178301 TGGTTGTGTCGCAAGTGGTA 59.822 50.000 0.00 0.00 37.83 3.25
2557 2896 1.877443 GGTTGTGTCGCAAGTGGTATT 59.123 47.619 0.00 0.00 37.83 1.89
2564 2903 2.806244 GTCGCAAGTGGTATTTGTGTCT 59.194 45.455 0.00 0.00 37.34 3.41
2565 2904 2.805671 TCGCAAGTGGTATTTGTGTCTG 59.194 45.455 0.00 0.00 37.34 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.671781 CCGTCTTGCCTCCTTGAGTG 60.672 60.000 0.00 0.00 0.00 3.51
1 2 1.674057 CCGTCTTGCCTCCTTGAGT 59.326 57.895 0.00 0.00 0.00 3.41
2 3 1.743252 GCCGTCTTGCCTCCTTGAG 60.743 63.158 0.00 0.00 0.00 3.02
3 4 2.347490 GCCGTCTTGCCTCCTTGA 59.653 61.111 0.00 0.00 0.00 3.02
11 12 2.032681 ACTTCCTGGCCGTCTTGC 59.967 61.111 0.00 0.00 0.00 4.01
12 13 1.672356 CCACTTCCTGGCCGTCTTG 60.672 63.158 0.00 0.00 31.36 3.02
13 14 1.415672 TTCCACTTCCTGGCCGTCTT 61.416 55.000 0.00 0.00 40.39 3.01
14 15 1.415672 TTTCCACTTCCTGGCCGTCT 61.416 55.000 0.00 0.00 40.39 4.18
15 16 1.072505 TTTCCACTTCCTGGCCGTC 59.927 57.895 0.00 0.00 40.39 4.79
16 17 1.228154 GTTTCCACTTCCTGGCCGT 60.228 57.895 0.00 0.00 40.39 5.68
17 18 0.323629 TAGTTTCCACTTCCTGGCCG 59.676 55.000 0.00 0.00 40.39 6.13
53 54 2.095372 GTCCGTCTTAAATTGGAAGCCG 59.905 50.000 0.00 0.00 31.04 5.52
81 82 1.929169 CTGTCATACACACATCCTGCG 59.071 52.381 0.00 0.00 0.00 5.18
94 95 2.364973 TGGGCCTCGGCTGTCATA 60.365 61.111 4.53 0.00 41.60 2.15
117 118 1.070471 GCCCAAACTAAATGCGCACG 61.070 55.000 14.90 3.99 0.00 5.34
125 126 0.824182 CCACCACCGCCCAAACTAAA 60.824 55.000 0.00 0.00 0.00 1.85
192 193 4.676586 GCCAAACGAACGGGCACG 62.677 66.667 6.92 6.92 46.92 5.34
221 222 1.004610 CAGACATGCGCTCGGTTTATG 60.005 52.381 9.73 4.32 0.00 1.90
222 223 1.290203 CAGACATGCGCTCGGTTTAT 58.710 50.000 9.73 0.00 0.00 1.40
223 224 1.358725 GCAGACATGCGCTCGGTTTA 61.359 55.000 9.73 0.00 43.87 2.01
239 240 1.586028 CACCCCATTTCCAACGCAG 59.414 57.895 0.00 0.00 0.00 5.18
242 243 2.645192 GCCCACCCCATTTCCAACG 61.645 63.158 0.00 0.00 0.00 4.10
245 246 4.374584 CGGCCCACCCCATTTCCA 62.375 66.667 0.00 0.00 0.00 3.53
262 263 3.586100 AATTATGTTGGTTTGGCGTCC 57.414 42.857 0.00 0.00 0.00 4.79
273 274 4.601019 GACCGCATCCTCAAATTATGTTG 58.399 43.478 0.00 0.00 0.00 3.33
274 275 3.312421 CGACCGCATCCTCAAATTATGTT 59.688 43.478 0.00 0.00 0.00 2.71
275 276 2.872245 CGACCGCATCCTCAAATTATGT 59.128 45.455 0.00 0.00 0.00 2.29
277 278 1.873591 GCGACCGCATCCTCAAATTAT 59.126 47.619 9.73 0.00 41.49 1.28
304 305 0.392706 AACAGACAGATGACACGGCA 59.607 50.000 0.00 0.00 0.00 5.69
306 307 3.130633 TCAAAACAGACAGATGACACGG 58.869 45.455 0.00 0.00 0.00 4.94
328 329 4.973055 CGCCCGTGTCCGTTTGGA 62.973 66.667 0.00 0.00 43.88 3.53
335 336 2.023414 TATCATGTCCGCCCGTGTCC 62.023 60.000 0.00 0.00 0.00 4.02
339 340 2.507854 CCCTATCATGTCCGCCCGT 61.508 63.158 0.00 0.00 0.00 5.28
345 346 1.664965 GCGCGACCCTATCATGTCC 60.665 63.158 12.10 0.00 0.00 4.02
350 351 2.011741 ATCAACGCGCGACCCTATCA 62.012 55.000 39.36 10.97 0.00 2.15
368 369 2.590821 GATCATGCTTTAGGCCACCAT 58.409 47.619 5.01 0.00 40.92 3.55
369 370 1.410083 GGATCATGCTTTAGGCCACCA 60.410 52.381 5.01 0.00 40.92 4.17
371 372 2.057137 TGGATCATGCTTTAGGCCAC 57.943 50.000 5.01 0.00 40.92 5.01
375 376 4.096190 ACCAGATGGATCATGCTTTAGG 57.904 45.455 5.72 0.00 38.94 2.69
384 385 2.306805 ACAGCAAGAACCAGATGGATCA 59.693 45.455 5.72 0.00 39.22 2.92
389 390 4.843220 AAAGAACAGCAAGAACCAGATG 57.157 40.909 0.00 0.00 0.00 2.90
390 391 5.859205 AAAAAGAACAGCAAGAACCAGAT 57.141 34.783 0.00 0.00 0.00 2.90
418 419 7.910441 TCCCCTAAAATAAACTGTAAGAACG 57.090 36.000 0.00 0.00 37.43 3.95
425 426 5.633117 TCCGTTTCCCCTAAAATAAACTGT 58.367 37.500 0.00 0.00 31.25 3.55
439 440 1.680338 CATTCCTCCATCCGTTTCCC 58.320 55.000 0.00 0.00 0.00 3.97
445 446 0.107017 AACAGCCATTCCTCCATCCG 60.107 55.000 0.00 0.00 0.00 4.18
446 447 2.149973 AAACAGCCATTCCTCCATCC 57.850 50.000 0.00 0.00 0.00 3.51
475 476 0.105224 TGCCGACTTCGTTTCCTTCA 59.895 50.000 0.00 0.00 37.74 3.02
476 477 1.128692 CATGCCGACTTCGTTTCCTTC 59.871 52.381 0.00 0.00 37.74 3.46
527 528 0.465097 TCCCGAGTCGTACTCCCATC 60.465 60.000 12.31 0.00 42.12 3.51
537 538 1.433879 CTTACCTGCTCCCGAGTCG 59.566 63.158 5.29 5.29 0.00 4.18
552 556 2.806434 ACAGCAAATGGATGTGGCTTA 58.194 42.857 0.00 0.00 46.14 3.09
569 573 7.484140 AGCTAAAAGGAAAAGAGAAACAACAG 58.516 34.615 0.00 0.00 0.00 3.16
614 618 4.406456 AGCATATGTTTCTGTTTCCACCA 58.594 39.130 4.29 0.00 0.00 4.17
644 648 3.364889 TTGCCGTCAGGATCTATAACG 57.635 47.619 0.00 0.00 41.02 3.18
713 1014 3.708403 TCAACAGCCATCAGATCAAGT 57.292 42.857 0.00 0.00 0.00 3.16
737 1038 4.997395 AGATATGCACGTCATACCATTTCC 59.003 41.667 9.05 0.00 40.22 3.13
753 1054 1.132588 GAACGGCGAGTCAGATATGC 58.867 55.000 16.62 0.00 0.00 3.14
1307 1639 0.986019 TTGGCATCCCTCGGGTATGT 60.986 55.000 1.18 0.00 36.47 2.29
1326 1658 5.011635 TGGTAGTCATCCGCATACATAACAT 59.988 40.000 0.00 0.00 0.00 2.71
1586 1920 3.555956 CCTTTCGTGATTCGGTCCTATTG 59.444 47.826 0.00 0.00 40.32 1.90
1591 1925 0.248289 TCCCTTTCGTGATTCGGTCC 59.752 55.000 0.00 0.00 40.32 4.46
1661 1996 8.997621 AGTATTGACATATTGTACGTTCAACT 57.002 30.769 9.94 2.99 0.00 3.16
1792 2131 9.565213 CAATCAATCTAAACATTTTCCTCTGAC 57.435 33.333 0.00 0.00 0.00 3.51
1823 2162 7.938140 TTCTACACTAGCATGGCTAAAATTT 57.062 32.000 0.00 0.00 40.82 1.82
1864 2203 6.238648 CCCGACTTCTGTAAAAATGTGAAAGT 60.239 38.462 0.00 0.00 0.00 2.66
1865 2204 6.142817 CCCGACTTCTGTAAAAATGTGAAAG 58.857 40.000 0.00 0.00 0.00 2.62
2040 2379 7.288810 ACCATCATGAAATGTTACAACAAGT 57.711 32.000 0.00 0.00 46.80 3.16
2048 2387 7.282224 GCCACTAACTACCATCATGAAATGTTA 59.718 37.037 0.00 5.00 46.80 2.41
2099 2438 8.859090 TCTTTCTTTTGCCTTCTTATCATCAAA 58.141 29.630 0.00 0.00 0.00 2.69
2110 2449 7.492344 TGTCATTTCTTTCTTTCTTTTGCCTTC 59.508 33.333 0.00 0.00 0.00 3.46
2154 2493 6.538742 TCTTTTACTGTTCCTGTTGACTTCAG 59.461 38.462 0.00 0.00 0.00 3.02
2160 2499 6.479972 TCTCTCTTTTACTGTTCCTGTTGA 57.520 37.500 0.00 0.00 0.00 3.18
2212 2551 2.814336 AGCTCGTCAAGGGTTTGAATTC 59.186 45.455 0.00 0.00 44.49 2.17
2217 2556 4.766404 ATTAAAGCTCGTCAAGGGTTTG 57.234 40.909 0.00 0.00 35.31 2.93
2223 2562 8.420374 TGGTCTATTTATTAAAGCTCGTCAAG 57.580 34.615 0.00 0.00 0.00 3.02
2251 2590 2.749621 CCAAGCATCTGTTGGTTCTACC 59.250 50.000 0.48 0.00 44.02 3.18
2252 2591 2.162408 GCCAAGCATCTGTTGGTTCTAC 59.838 50.000 3.86 0.00 44.02 2.59
2253 2592 2.224744 TGCCAAGCATCTGTTGGTTCTA 60.225 45.455 3.86 0.00 44.02 2.10
2274 2613 4.657039 TGCCGATCCTACTTATAAACCCTT 59.343 41.667 0.00 0.00 0.00 3.95
2285 2624 1.343465 CGGGTTTATGCCGATCCTACT 59.657 52.381 0.00 0.00 0.00 2.57
2311 2650 1.012086 GTCGTGCATGCATCATCAGT 58.988 50.000 25.64 0.00 0.00 3.41
2387 2726 1.481819 GCAGTTGTGGCAAAGCAACG 61.482 55.000 12.13 9.21 46.66 4.10
2514 2853 4.238761 TCACCAACACGTTTGTCAAAAA 57.761 36.364 0.00 0.00 33.55 1.94
2545 2884 3.187478 CAGACACAAATACCACTTGCG 57.813 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.