>input_sequence_75758
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--------------------------------ATGAGGAGCACACAAATCCTATTCCTGGCATTTGCCTTCTTGATGCTA
TCGTCAGGTATCTAGTCGGTCAATACCATGACCTCTAGTGCCTAGTTATCTACACTAGTAAGGCGTGTGAATTTCTGACA
TATGTATATATATATTTCATAACTGATCTAATATACA--ATATCTT-CCTTTTGATATACAGCTATGGCAACTTCTAAGC
CAGTATGCAACCATATCCTCAAAAAGGGACATTGTAACAACAATGATTGCCGAGCG----------------TACTGCAA
GAAGTTCATCCCCCCACCCGGTGGCCCATCTCCCAAGTACATACCCGAGGGATGCCAATGTTATGTATGCGGATGACTAC
CACTAAACCTGGAATCTAGCTAGATAAAAAATTCATATACATGGATGTATCACAGTTGCTTGAGTAATGAAT--AATGAT
TTGAGTAATGTAGCATAGTATGAAGTTCAGCAGTGTGATAACTATGAAAATTTGTACTATGTTGCAGACAATTATTGGAT
TTCAAAATGATATAATTTCAAATCCAGTTTCAATCATCATATCAAGAAGTAAAATATAA---------------------
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>chr6D_1_TraesCS6D01G264500
CACTCAAGGAGGCAAGACGGCCAGGAAGTGGAAACTATGGACTGGCCGGTCCACGGCTTCCAATTTAAGACGGACGACGA
CCGCAGGATGTGTGTATGACAGCCGAGGCCCACCGTGCGTGCGCATTTAGTTTGGGCGGTGGTGGTAGTTGGGCGGCCGC
CACACGTCCCCAAGGCGGACGACCCGCAAGCGCGTGCCCGTTCGTTTGGCGTCCGTGTGGACATAAACCGAGCGCATGTC
TGCGTTGGAAATGGGGTGGGCCGGACGCCAAACCAACATAATTTGAGGATGCGGTCGCGCGCCGTGCCGTGTCATCTGTC
TGTTTTGATCCAAACGGACACGGGCGGACATGATAGGGTCGCGCGTTGATGGTGGCCTAAAGCATGATCCATCTGGTTCT
TGCTGTTCTTTTTTCTATCGTTCTTACAGTTTATTTTAGGGGAAACGGATGGAGGAATGGCTGTTTTTTTCATTTTGAAG
GAAACGAAGTCGGCATGCTGTGCGTCGCTGGATTTGCTGGGAGCACAGATGGGAGTACGACTCG---GGAGCAGGTAAGC
CACATCCATTTGCTGTTGTTTCTCTTTTCCTTTTAGCTAAAACATTCCGTAATAATATGGTGGAAACAGAAACATATGCT
ATACCTTCGTTATAGATCCTGACGGC------------------------------------------------------
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--AAAAAATCTTGTTTAAATTATGGATGAAAGTCTGCTTT-GTGGTTTTTTCTACTTGATCTGATGGCTGTTGATCGGGA
AATGGTATGACGTGCATATCTGACTCGCCGTTCTATAGAAGTTAATTAATAGTATTGGTCCCTTCTTCACCACGAATCAT
ATT----AATCAATTAC--TTTTTTTGAGGGAAATATTAATCAGTTGCAATTAATGTTTCCTTATCTTATTCTCTGTCCA
TTATAAAAGGAGCATCATTTGCCATTGAGTACCACACTCAACAGCCCAAAGATCA-C-AAAAACGCCATTGTAGCTACTC
AATCCTAGCATTAA----GTTTGTAACAAGAAATGAGGAGCACACAAATCCTATTCCTGGCATTTGCCTTCTTGATGCTA
TCGTCAGGTATCTAGTCGGTCAATACCATGACCTCTAGTGCCTAGTTATCTACACTAGTAAGGCGTGTGAATTTCTGACA
TATGTATATATATATTTCATAACTGATCTAATATACA--ATATCTT-CCTTTTGATATACAGCTATGGCAACTTCTAAGC
CAGTATGCAACCATATCCTCAAAAAGGGACATTGTAACAACAATGATTGCCGAGCG----------------TACTGCAA
GAAGTTCATCCCCCCACCCGGTGGCCCATCTCCCAAGTACATACCCGAGGGATGCCAATGTTATGTATGCGGATGACTAC
CACTAAACCTGGAATCTAGCTAGATAAAAAATTCATATACATGGATGTATCACAGTTGCTTGAGTAATGAAT--AATGAT
TTGAGTAATGTAGCATAGTATGAAGTTCAGCAGTGTGATAACTATGAAAATTTGTACTATGTTGCAGACAATTATTGGAT
TTCAAAATGATATAATTTCAAATCCAGTTTCAATCATCATATCAAGAAGTAAAATATAAATATCTAGATTTTAATGTCCC
AATAGGACCGAATCACGAAAGGGAAAACT-TGAACACCATAAGCCACCAAAAAAGCTACTAGAAGAACAAATCGAAGTTG
AACGTACAATATGTCAATACTATTAATGAACTAAAAGTAAAGTTATGATACAATTTCATATAAAATATTTAGTAATTTAC
AGTAGATATATCACATGGAAACGGAACACCTAACTGAAAAAA----CACTGTCAGAGGAAAATGTTTAGATTGATTGTTG
AAAATTTTAGCCATGCTAGTGTAGAATATTTCTTAGAGAAAAACTTTCACATTTTTACAGAAGTCGGGGAAATTTTACAA
TAGTAGGTGAAAAATATTCCTTCTATGTAACGAGGCAGTTATGCTTATCTTTTATTTTCAACCCAAATATTACTACATCA
CTTACCATTGAAAGTATATTAGAAATTATTAGGATAGAAAACTATTAAATAGAAAAAAACTTGTTGTAACATTTCATGAT
GGTAGTTAGTGGCAAATTAAAAATAGCAAACAAGTTATTTGATGATAAGAAGGCAAAAGAAAGAAAGAAATGACACATGA
AAAGATGAATGCCTGAAGTCAACAGGAACAGTAAAAGAGAGAAAATATAAGAAGAAGAAAAATACAACTAGAATTCAAAC
CCTTGACGAGCTTTAATAAATAGACCATGGGTAGAACCAACAGATGCTTGGCAAGGGTTTATAAGTAGGATCGGCATAAA
CCCGATATTACTGATGATGCATGCACGACTTTTGTTCTGTAGGCTTCAGAAAGAAGATTCATACTGATGCTACGTACCGT
GCGGCCGTTGCTTTGCCACAACTGCTCCTCGGTTCACCGCACCCGTAGGCGGTCTATTGTTTAAAAAAAATCTTCTCATC
TTTTGAATAGTTTGATTGCTTACCACATGTGTCACGTTGTAAAATCTTTTCATTTTTGACAAACGTGTTGGTGATGGTTG
TGTCGCAAGTGGTATTTGTGTCTG
>chr6A_19
------------------GGCCAGGAAGTGGAAACTGTGGACTGGCCGGTCCATGGCTTCCAATTTAAGAAGGACGACGA
CTGCAGGATGTGTGCATGACAGCCGAGGCCCACCATGTGTGCGCACTTAGTTTGGGCGGTGGAGGTAGTTTGGCGGCTGC
CACATGTCCCCGAGGCAGACGATACGCAAGTGTGTACCTGTTCGTTCGACGTCCGTGTGGATGCAAACAAGCA-CATGTT
TGTGTCAGAAATGGGATGGGCCAGACGCCAAACGGGCTTAATTTGAGGATGCGGCCGCGCATTGGGTCGTGTCATCTGTC
TGTTTTTGCCCAAACAGACGCGGGCAGACAAGATGGGGTCGCGCGTTGGAGTTGGTCTAAAGCACGATCGGTCTGGTTCT
TGCTATTCTTTTTTCTATTGTTCTTGCAGTTTATTTTAGAGGAAATAGATGGAGGGATTGCTGGTTTTTTCATTTCAAAG
GAAACGAAGTCGGCATGCTGTGCGTCGCTGGATTTGCTGGGAGCACAAATGGGAGTATGACTCGGGAGGAGCAGGCAAGC
CCCATCCATTTGGTGTTGTTTCTCTTTTCCTTTTAGCTAAAACATTCCGTAATAATACGGTGGAAACTGGAACATATGCT
ATACCTTTATTATAGATTCTCTGGTTGGATGGTTAGAAGGACTGTGGTATTCTCAGCACATAGGGTTCAAGTTCTGGTGC
CCGCATTATTTCTGGATTAATTTCAGGATTTCCAGCGATGCGCTTTTAGTGGGATGAGACGTTCCCATCGACGACGAGAC
GCCTACGGTGACTTCGTAAATTTCAAGATGACATGTCGGCTCAGTCTCTCGGAGGTGCTCATAGGGGTAGGGTGTACGTG
TGTGCGTTCATAGGGGTGAGTGTATGCGTGTATGTATGAGCGCTTGCGTCTGTACTGATGTTCAAAGAAAAAATCTTGAC
GGAAAAAATCTTGTTTAAATTATGGATGAAAATCTGCTTTTGTGGTTTTTTCTGCTTGATCTGATGGCTGTTGATCGAGA
AATGGTATGACGTCCATATCTGACTCGCCATTCTATAGAAGTTAATTAATAATATTGGTCCTTTCTTCACCACGAATCAT
ATTAATAAATCAATTGC--TCTTTTTGAGGGAAATATTAATCAGTTGCAATTAATGTGTCCTTATCTTATTCTCTGCCCA
TTATAAAAGGAGCATCATTTGCCATTGAGTACCACACTCAACCGCCCAAAGATCA-C-AAAAACGCCATTGTAGCTACTC
AATCCTAGCATTAATTAAGTTTGTAAGAAGAAATGAGGAGCACACAAATCCTATTCCTGGCATTTGCCTTCTTGATACTA
TCGTCAGGTATCTAGTCGGTCAATACCATGAACTCTAGTGCCTAGTTATCTACACTAGTAAGGCGTG-GAATTTCTAACG
TATGTATAT--ATATTTCATAACTGATCTAATATACA--ATATCTT-CCTTTTGGTATACAGCTATGGCAACTTCTAAGC
CAGTATGCAACCATATCCTCAAAAAGGGACATTGTAACAACAATGATTGCCGAGCG----------------TACTGCAA
AAAGTTCATCCCCCCACCCGGTGGCCCATCTCCCAAGTGCATACCCGAGGGATGCCAGTGTTATGTATGTGGATGACTAC
CACCAAACCTGGAATCTATCTAGATAAAAAATTCATATACATGGATGTATCACAGTTGCTTGAGTAATGAAT--AATGAT
TTGAGTAATATAGCATAGTATGAAGTTCAGTAGTGTGATAACAATGAAAATTTGTACTATGTTGCAGACAATTATTGGGT
TTCAAAATGATATAATTTCAAATCCAGATTCAGTCTTCATATCAAGAAGTAAAATATAAATATCTAGATTTTAATGTCCT
AATAAGACCGAATCACGAAAGGGAAAACT-TGAACACCATAAGCCACCAAAAAAGTTACTAGAAGAACAAATCGAGGTTG
AACATACAATATGTCCATACTATTAATGAACTAAAAGTAAAGTTATGATACATTTTCATATAAAATATTTAGTAATTTAC
AGTAGATATATCACATGGAAACGGAACACCTAACTGAAAAAAGTTTCACTATCAGAGGAAAATGTTTAGATTGATTGTTG
A-AATTTTAGCCATGCTAGTGTAGAATATTTCTTGGAGAAAATGTTTCACATTTTTACAGAAGTCAGGGAAATTTTACAA
T-----------------------------------------------CTTTTATTTTCAACTAAAATATTACTACATCA
CTCACCATTGAAAGTATACTGGAAATTATTAGGATATAAAACTATTAAACAGAAAAAAGCTTGTTGGAACATTTCATGAT
GGTAGTTAGTGGCAAATTAAAAATAGCAAACAAGTTAGTTGATGATAAAAAGGCAAAAGAAAGAAAGAAATGACACATGA
AAAGATGAATAGATGAAGCCAACAGGAACAGTAAAAGAGAGAAAATATAAGAA---GAAAAATACAACTATAATTGAAAC
CTTTGACGAGCTTTAATAAATAGACCATGCACAGAACCAACAGATGCTTGGCCAGGGTTTATATGTAGGATCGGCATAAA
CCCGATATTGCTGATGATGCATGCACGACTTTTGGTCTGTAGGCTTCAGAAAGAAGATTCATGCTTACGCTACGTATCGT
GAGGCTGTTGCTTTGCCACAATTGCTCCTCGGTTCACTGCACCCATAGGTGCTCTATTGCTTTTAAAAAATCTTCTCATC
TTTTGAATAGTTTGATTGCTTACCACATGTGTCACGTTCTAAAATCTTTTCA-TTTTGACAAACGTGTTGGTGATGGTTG
TGTTGCAAGTGGTGTCTGTGTC--
>chr6B_775
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----------------------------------ATAGATGTTAATTAATAGTATTGGTCCCTTCTTCACCATGAATCAT
ATT----AATGAATTGCAATCTTTTTTAGGGATATATTAATCAATTGCAATTAATGTGTCCTTATCTTATTCTATGCCCA
TTATAAAAGGAGCATCATTTGTCATTCGGTACCACACTCAGCAGTCCAAGACCACCC-AAAAAAACCATTGTTGCTACTC
AATCCTAGCGTTAA----GTTTGTAACAAGAAATCGGGAGCAGACACACCCTATTCCTTGCATTTTCCTTCTTGATGCTA
TCGTCAGGTATCTAGTCAGTCAATACCTTGAATTCTAGTGCCTAGTTATCTACACTAT-----TGTGTGAATTTCTGACA
TATGTATAT--ATATTTCATAGTTGATCTAATATACAATATATCTT-CCTTTTGATATACAGCAATGGCAACTTCTAAGG
TAGTATGCAACCATATCATCAAAAAGGGACAATGTAGCAACAACGATTGTCTAGCTTACTGCTTGTCTAGCTTACTGCAA
GAAGTTCATTGCCCCACCCGGTGGCCCATCTACCAAGTGCATACCCGAGGGATGTCAGTGTTATATATGCGGAGGACTAC
CACCAAACCCAGAATCTAGCTAGAT--AAAATTCATAAACATGGATGTATCACAGTTGCTTGAGTAATGAAT--AATTAT
TTGAGTAATGTAGCATAGTATGAAGTTCAGTAGTGTTATAACAATGAGAATTTGTACTATGTTGTAGACAATTATTGGAT
TCCAAAATGATCCAATTTT------------AATCTTCATATCAAGAAGTAAAATATAAATATCTAGATTTTCATGTCCT
AAAAAGACCAAAGCACGAAAGGGAAAACTTTGAACACCATAAGACAC-AAAAAAGCTACTAGAAGAACAAATAGAGGTTG
AACTTACAATATGTCAATACCATTAGTGAACTGAAAGTAAATTTATGACATT-TTCCATACAAAATATTTTACAATTTAT
AGTAGACATAGCACACGGAAACTTCATACCTAATTGAAAATAGTTTCACTATCTAAGGAAAATGTTTAGATTGATTGTTG
A-CATTTTAGCTATGCTAGTGTAGAATATTTCTTGGAG------TTTCGCATTTTTACAGAAGCAGAGGAAACTTTACAA
TACTAGGTGAAAAATATTCCTTCTAAGTTATGAGGCAGTTATGCTTATCTTTTATTTTCAAGTCAAACATTACAACATCA
CTAACCATTGAAAGTATATTAGAAA-------------------------------------------------------
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>chr6A_892
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-----------------------------------------------------------------------------CCA
CTATAAAGGAAGCATCATTTGCCTTTCAATTCCACACT-AGTAGTCCAAAGGGGCACAACAAGCACCATATTAGCAACTC
AATCCTAGAGTTCA----GTGTAGACCAAGAAATGAGGAGCACACACATTCTATTCCTTGCATTTTCCCTCCTAATTCTA
TCATTGGGTATCTAGTCGATCAATACCAAGCACTCTAGTGCCTAGTTATCTACACTAGTAATGTGTGTGAATTTTTGACA
TATGTATAT--ATTGCATGATTG---TCTAACATACC--CTATTTTCCCTTTTGATATCTAGCTATGGCAGCTTCTAAGA
CCGTATGCAAACACATCATCAGGAAGGGCAAATGTAACAACGCCGAATGCCTAT----------------CTTACTGCAA
GAAGTTTATCTCCCCACCCGGTGGCCCATCCGCCACGTGCGTACCCGAGGGATGCAAGTGTTATATGTGCGGAGGAATTC
CACCGAACACACCATATAGCTAGTAAAATAG--CATATGCATGGACTTATCACAGTTGGTTGAGTAATGAATAAAATAAT
TCGAGTAATATAGCATAGTATGAAGTTCAACAGTGCGAGAACAATGAGATTTTTTACTATG-------------------
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>SNPs
SSSSSSSSSSSSSSSSSS------------------S----------------S----------------S---------
-S------------S-------------------S--S-------S----------------S-------S------S--
----S------S----S-----SS------S-S--S--S-------S-S------------SSS----SSSSSS-----S
--S--SS--------S------S----------SSS-S----------------S-----SSS-S-S-------------
------SSS------S---S-----S----S---S-------------SS-S---S--------S----SS---------
----S-------------S------S-------------S-----SS--------S--S----S-----------SS---
-----------------------------------------------S---------S-----------------S----
-S----------S--------------------------------------------S---------S-S----------
-------SS--------S--SSS-SS------------------------------------------------------
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-------------------------------S---------------------S-----------------------S--
-------------S---------------S--------------------------------------------------
---------------S----S------------------------------------S------------------S---
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-------------------------------S------------------------------------------------
---------SS---------------------------------------------------------------------
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--------------------------------------S------------------S----------------------
---S----------------------------------------------------------------------------
------------------------------------------S-------------------------------------
---------------------------S-------S-------------------------------------------S
----S----------------------------------------------------------------------S----
---S------------------------------------------------S---------------------------
--------------------------------------------------S-----------------------------
-S--------------------------------S-------SS------------------------------------
--S----------------------S--S-S-------------------------------S-----------------
--S---------------------------------S------------S--------S-------S-------------
-------------------------------------S----------S-------------------------------
----------SSS-----S----------------------------------SSS--------------S----S----
-S---------------------------SSS--------------------S----------S----------------
---------S------------------------S---------------------------S--S-S--------S---
-S---S---------------S---------------S------S----S-S-------S--SS----------------
--------------------------------------S-------------S---------------------------
---S---------S-S------SS
>forward_456
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------------------------------------TAGGGGAAACGGATGGAGGA------------------------
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>reverse_1925
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----GGACCGAATCACGAAAGGGA--------------------------------------------------------
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