Multiple sequence alignment - TraesCS6D01G249200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G249200 chr6D 100.000 3104 0 0 1 3104 352834526 352837629 0.000000e+00 5733.0
1 TraesCS6D01G249200 chr6D 94.514 401 19 3 2 399 17972632 17972232 1.580000e-172 616.0
2 TraesCS6D01G249200 chr6D 94.859 389 16 4 2 388 141275130 141275516 3.420000e-169 604.0
3 TraesCS6D01G249200 chr6D 83.594 256 42 0 1013 1268 298207274 298207019 1.110000e-59 241.0
4 TraesCS6D01G249200 chr6D 82.869 251 41 2 1019 1268 296993543 296993294 1.120000e-54 224.0
5 TraesCS6D01G249200 chr6D 82.308 260 38 5 1013 1268 298399315 298399060 5.210000e-53 219.0
6 TraesCS6D01G249200 chr6A 92.906 1903 80 19 387 2278 490301193 490303051 0.000000e+00 2715.0
7 TraesCS6D01G249200 chr6A 88.998 818 56 18 2295 3104 490303102 490303893 0.000000e+00 981.0
8 TraesCS6D01G249200 chr6A 81.853 259 47 0 1010 1268 421102769 421103027 5.210000e-53 219.0
9 TraesCS6D01G249200 chr6B 94.305 878 33 7 1332 2208 526100943 526100082 0.000000e+00 1328.0
10 TraesCS6D01G249200 chr6B 93.577 903 37 7 387 1276 526101916 526101022 0.000000e+00 1327.0
11 TraesCS6D01G249200 chr6B 89.259 810 52 18 2206 3000 526100049 526099260 0.000000e+00 981.0
12 TraesCS6D01G249200 chr6B 83.203 256 43 0 1013 1268 461961858 461961603 5.170000e-58 235.0
13 TraesCS6D01G249200 chr6B 82.677 254 44 0 1013 1266 461903664 461903411 3.110000e-55 226.0
14 TraesCS6D01G249200 chr6B 82.422 256 45 0 1013 1268 461848254 461847999 1.120000e-54 224.0
15 TraesCS6D01G249200 chr5D 95.607 387 15 1 2 386 272356056 272356442 1.220000e-173 619.0
16 TraesCS6D01G249200 chr4D 95.596 386 17 0 1 386 385586711 385587096 1.220000e-173 619.0
17 TraesCS6D01G249200 chr4D 95.584 385 17 0 2 386 5724572 5724188 4.400000e-173 617.0
18 TraesCS6D01G249200 chr4D 94.885 391 19 1 1 391 396364788 396364399 7.360000e-171 610.0
19 TraesCS6D01G249200 chr4B 95.596 386 14 3 2 385 206528090 206528474 1.580000e-172 616.0
20 TraesCS6D01G249200 chr2D 94.697 396 20 1 2 396 399663060 399663455 5.690000e-172 614.0
21 TraesCS6D01G249200 chr2D 93.617 94 5 1 1353 1445 555395715 555395808 4.170000e-29 139.0
22 TraesCS6D01G249200 chr2D 95.349 86 4 0 1360 1445 555577008 555577093 1.500000e-28 137.0
23 TraesCS6D01G249200 chr7D 94.207 397 20 3 2 396 561873790 561873395 1.230000e-168 603.0
24 TraesCS6D01G249200 chr7D 90.361 83 8 0 1360 1442 165635180 165635262 3.270000e-20 110.0
25 TraesCS6D01G249200 chr2A 95.556 90 4 0 1356 1445 695150630 695150719 8.970000e-31 145.0
26 TraesCS6D01G249200 chr2B 94.444 90 5 0 1356 1445 662373640 662373729 4.170000e-29 139.0
27 TraesCS6D01G249200 chr2B 92.553 94 6 1 1353 1445 661851750 661851843 1.940000e-27 134.0
28 TraesCS6D01G249200 chr7B 90.361 83 8 0 1360 1442 128822544 128822626 3.270000e-20 110.0
29 TraesCS6D01G249200 chr3B 90.566 53 3 2 2970 3020 336251334 336251386 5.550000e-08 69.4
30 TraesCS6D01G249200 chr1A 90.000 50 3 2 2970 3017 167927976 167928025 2.580000e-06 63.9
31 TraesCS6D01G249200 chr5B 87.719 57 0 6 2968 3020 214295904 214295851 3.340000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G249200 chr6D 352834526 352837629 3103 False 5733 5733 100.000000 1 3104 1 chr6D.!!$F2 3103
1 TraesCS6D01G249200 chr6A 490301193 490303893 2700 False 1848 2715 90.952000 387 3104 2 chr6A.!!$F2 2717
2 TraesCS6D01G249200 chr6B 526099260 526101916 2656 True 1212 1328 92.380333 387 3000 3 chr6B.!!$R4 2613


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 381 0.034337 ACACGTGTGGGCGTTAGATT 59.966 50.0 22.71 0.0 43.83 2.40 F
994 1014 0.105453 AGAGTGGTCTGGTCAGGTGT 60.105 55.0 0.00 0.0 0.00 4.16 F
1272 1293 0.798776 CCTTGCTCGGCAACAAGTAG 59.201 55.0 7.15 0.0 43.99 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1277 1298 0.098728 AATGCACGCAGATTAACGGC 59.901 50.0 0.0 0.0 36.41 5.68 R
1902 1952 0.178929 ACCACTCGTTTCCCTCCTCT 60.179 55.0 0.0 0.0 0.00 3.69 R
3023 3158 0.036294 GTGAGTCCTAGCCAACCACC 60.036 60.0 0.0 0.0 0.00 4.61 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.927668 AAAATATTTTCATGGTCAAAGTACTGG 57.072 29.630 7.64 0.00 0.00 4.00
30 31 8.877864 AATATTTTCATGGTCAAAGTACTGGA 57.122 30.769 0.00 0.00 0.00 3.86
31 32 8.877864 ATATTTTCATGGTCAAAGTACTGGAA 57.122 30.769 0.00 0.00 0.00 3.53
32 33 7.781324 ATTTTCATGGTCAAAGTACTGGAAT 57.219 32.000 0.00 0.00 0.00 3.01
33 34 7.595819 TTTTCATGGTCAAAGTACTGGAATT 57.404 32.000 0.00 0.00 0.00 2.17
34 35 6.573664 TTCATGGTCAAAGTACTGGAATTG 57.426 37.500 0.00 0.00 0.00 2.32
35 36 4.458989 TCATGGTCAAAGTACTGGAATTGC 59.541 41.667 0.00 0.00 0.00 3.56
36 37 3.153919 TGGTCAAAGTACTGGAATTGCC 58.846 45.455 0.00 4.17 37.10 4.52
37 38 3.153919 GGTCAAAGTACTGGAATTGCCA 58.846 45.455 0.00 0.00 46.96 4.92
48 49 4.797800 TGGAATTGCCATCATCGAAAAA 57.202 36.364 0.00 0.00 43.33 1.94
49 50 4.493547 TGGAATTGCCATCATCGAAAAAC 58.506 39.130 0.00 0.00 43.33 2.43
50 51 4.220382 TGGAATTGCCATCATCGAAAAACT 59.780 37.500 0.00 0.00 43.33 2.66
51 52 4.563976 GGAATTGCCATCATCGAAAAACTG 59.436 41.667 0.00 0.00 36.34 3.16
52 53 5.389859 AATTGCCATCATCGAAAAACTGA 57.610 34.783 0.00 0.00 0.00 3.41
53 54 4.844998 TTGCCATCATCGAAAAACTGAA 57.155 36.364 0.00 0.00 0.00 3.02
54 55 4.844998 TGCCATCATCGAAAAACTGAAA 57.155 36.364 0.00 0.00 0.00 2.69
55 56 5.389859 TGCCATCATCGAAAAACTGAAAT 57.610 34.783 0.00 0.00 0.00 2.17
56 57 5.782047 TGCCATCATCGAAAAACTGAAATT 58.218 33.333 0.00 0.00 0.00 1.82
57 58 5.634439 TGCCATCATCGAAAAACTGAAATTG 59.366 36.000 0.00 0.00 0.00 2.32
58 59 5.445010 GCCATCATCGAAAAACTGAAATTGC 60.445 40.000 0.00 0.00 0.00 3.56
59 60 5.062558 CCATCATCGAAAAACTGAAATTGCC 59.937 40.000 0.00 0.00 0.00 4.52
60 61 5.193663 TCATCGAAAAACTGAAATTGCCA 57.806 34.783 0.00 0.00 0.00 4.92
61 62 5.782047 TCATCGAAAAACTGAAATTGCCAT 58.218 33.333 0.00 0.00 0.00 4.40
62 63 5.634439 TCATCGAAAAACTGAAATTGCCATG 59.366 36.000 0.00 0.00 0.00 3.66
63 64 5.193663 TCGAAAAACTGAAATTGCCATGA 57.806 34.783 0.00 0.00 0.00 3.07
64 65 5.782047 TCGAAAAACTGAAATTGCCATGAT 58.218 33.333 0.00 0.00 0.00 2.45
65 66 5.863397 TCGAAAAACTGAAATTGCCATGATC 59.137 36.000 0.00 0.00 0.00 2.92
66 67 5.865552 CGAAAAACTGAAATTGCCATGATCT 59.134 36.000 0.00 0.00 0.00 2.75
67 68 7.028962 CGAAAAACTGAAATTGCCATGATCTA 58.971 34.615 0.00 0.00 0.00 1.98
68 69 7.008628 CGAAAAACTGAAATTGCCATGATCTAC 59.991 37.037 0.00 0.00 0.00 2.59
69 70 6.839124 AAACTGAAATTGCCATGATCTACA 57.161 33.333 0.00 0.00 0.00 2.74
70 71 6.839124 AACTGAAATTGCCATGATCTACAA 57.161 33.333 0.00 0.00 0.00 2.41
71 72 6.839124 ACTGAAATTGCCATGATCTACAAA 57.161 33.333 0.00 0.00 0.00 2.83
72 73 6.624423 ACTGAAATTGCCATGATCTACAAAC 58.376 36.000 0.00 0.00 0.00 2.93
73 74 6.435277 ACTGAAATTGCCATGATCTACAAACT 59.565 34.615 0.00 0.00 0.00 2.66
74 75 7.611467 ACTGAAATTGCCATGATCTACAAACTA 59.389 33.333 0.00 0.00 0.00 2.24
75 76 8.347004 TGAAATTGCCATGATCTACAAACTAA 57.653 30.769 0.00 0.00 0.00 2.24
76 77 8.801299 TGAAATTGCCATGATCTACAAACTAAA 58.199 29.630 0.00 0.00 0.00 1.85
77 78 9.807649 GAAATTGCCATGATCTACAAACTAAAT 57.192 29.630 0.00 0.00 0.00 1.40
104 105 4.923281 CCACATGGCAACTTTAGTTTAAGC 59.077 41.667 0.00 0.00 35.83 3.09
105 106 5.508825 CCACATGGCAACTTTAGTTTAAGCA 60.509 40.000 0.00 0.00 35.83 3.91
106 107 5.402270 CACATGGCAACTTTAGTTTAAGCAC 59.598 40.000 0.00 0.00 35.83 4.40
107 108 5.301805 ACATGGCAACTTTAGTTTAAGCACT 59.698 36.000 0.00 0.00 35.83 4.40
108 109 6.488683 ACATGGCAACTTTAGTTTAAGCACTA 59.511 34.615 0.00 0.00 35.83 2.74
109 110 7.176690 ACATGGCAACTTTAGTTTAAGCACTAT 59.823 33.333 0.00 0.00 35.83 2.12
110 111 6.908825 TGGCAACTTTAGTTTAAGCACTATG 58.091 36.000 5.98 0.00 35.83 2.23
111 112 6.072175 TGGCAACTTTAGTTTAAGCACTATGG 60.072 38.462 5.98 0.00 35.83 2.74
112 113 5.800438 GCAACTTTAGTTTAAGCACTATGGC 59.200 40.000 0.00 0.00 35.83 4.40
113 114 6.569610 GCAACTTTAGTTTAAGCACTATGGCA 60.570 38.462 0.00 0.00 35.83 4.92
114 115 7.367285 CAACTTTAGTTTAAGCACTATGGCAA 58.633 34.615 0.00 0.00 35.83 4.52
115 116 6.909909 ACTTTAGTTTAAGCACTATGGCAAC 58.090 36.000 0.00 0.00 35.83 4.17
116 117 6.715264 ACTTTAGTTTAAGCACTATGGCAACT 59.285 34.615 0.00 0.00 33.68 3.16
117 118 7.881232 ACTTTAGTTTAAGCACTATGGCAACTA 59.119 33.333 0.00 0.00 32.13 2.24
118 119 7.605410 TTAGTTTAAGCACTATGGCAACTAC 57.395 36.000 0.00 0.00 32.73 2.73
119 120 5.556915 AGTTTAAGCACTATGGCAACTACA 58.443 37.500 0.00 0.00 35.83 2.74
120 121 5.643777 AGTTTAAGCACTATGGCAACTACAG 59.356 40.000 0.00 0.00 35.83 2.74
121 122 3.703001 AAGCACTATGGCAACTACAGT 57.297 42.857 0.00 0.00 35.83 3.55
122 123 2.977914 AGCACTATGGCAACTACAGTG 58.022 47.619 0.00 1.76 40.78 3.66
123 124 2.303022 AGCACTATGGCAACTACAGTGT 59.697 45.455 0.00 0.00 40.30 3.55
124 125 3.513912 AGCACTATGGCAACTACAGTGTA 59.486 43.478 2.36 2.36 40.30 2.90
125 126 4.020573 AGCACTATGGCAACTACAGTGTAA 60.021 41.667 4.21 0.00 40.30 2.41
126 127 4.693566 GCACTATGGCAACTACAGTGTAAA 59.306 41.667 4.21 0.00 40.30 2.01
127 128 5.390567 GCACTATGGCAACTACAGTGTAAAC 60.391 44.000 4.21 0.00 40.30 2.01
128 129 5.699001 CACTATGGCAACTACAGTGTAAACA 59.301 40.000 4.21 0.21 36.34 2.83
129 130 6.371548 CACTATGGCAACTACAGTGTAAACAT 59.628 38.462 4.21 7.13 36.34 2.71
130 131 6.940298 ACTATGGCAACTACAGTGTAAACATT 59.060 34.615 4.21 0.00 37.61 2.71
131 132 8.098286 ACTATGGCAACTACAGTGTAAACATTA 58.902 33.333 4.21 0.00 37.61 1.90
132 133 7.938140 ATGGCAACTACAGTGTAAACATTAT 57.062 32.000 4.21 0.00 37.61 1.28
133 134 7.139896 TGGCAACTACAGTGTAAACATTATG 57.860 36.000 4.21 0.00 37.61 1.90
134 135 6.150307 TGGCAACTACAGTGTAAACATTATGG 59.850 38.462 4.21 0.00 37.61 2.74
135 136 6.027749 GCAACTACAGTGTAAACATTATGGC 58.972 40.000 4.21 0.00 0.00 4.40
136 137 6.348950 GCAACTACAGTGTAAACATTATGGCA 60.349 38.462 4.21 0.00 0.00 4.92
137 138 7.589395 CAACTACAGTGTAAACATTATGGCAA 58.411 34.615 4.21 0.00 0.00 4.52
138 139 7.141100 ACTACAGTGTAAACATTATGGCAAC 57.859 36.000 4.21 0.00 0.00 4.17
139 140 6.940298 ACTACAGTGTAAACATTATGGCAACT 59.060 34.615 4.21 0.00 37.61 3.16
140 141 6.648879 ACAGTGTAAACATTATGGCAACTT 57.351 33.333 0.00 0.00 37.61 2.66
141 142 7.049799 ACAGTGTAAACATTATGGCAACTTT 57.950 32.000 0.00 0.00 37.61 2.66
142 143 7.496747 ACAGTGTAAACATTATGGCAACTTTT 58.503 30.769 0.00 0.00 37.61 2.27
143 144 7.437862 ACAGTGTAAACATTATGGCAACTTTTG 59.562 33.333 0.00 0.00 37.61 2.44
144 145 6.928492 AGTGTAAACATTATGGCAACTTTTGG 59.072 34.615 0.00 0.00 37.61 3.28
145 146 6.147000 GTGTAAACATTATGGCAACTTTTGGG 59.853 38.462 0.00 0.00 37.61 4.12
146 147 4.972751 AACATTATGGCAACTTTTGGGT 57.027 36.364 0.00 0.00 37.61 4.51
147 148 6.426646 AAACATTATGGCAACTTTTGGGTA 57.573 33.333 0.00 0.00 37.61 3.69
148 149 6.426646 AACATTATGGCAACTTTTGGGTAA 57.573 33.333 0.00 0.00 37.61 2.85
149 150 6.426646 ACATTATGGCAACTTTTGGGTAAA 57.573 33.333 0.00 0.00 37.61 2.01
150 151 6.831976 ACATTATGGCAACTTTTGGGTAAAA 58.168 32.000 0.00 0.00 34.75 1.52
151 152 7.283329 ACATTATGGCAACTTTTGGGTAAAAA 58.717 30.769 0.00 0.00 35.50 1.94
175 176 8.964420 AAAAATTCGTCGAAACATATCAACAT 57.036 26.923 12.40 0.00 0.00 2.71
176 177 7.953305 AAATTCGTCGAAACATATCAACATG 57.047 32.000 12.40 0.00 0.00 3.21
177 178 6.902224 ATTCGTCGAAACATATCAACATGA 57.098 33.333 12.40 0.00 0.00 3.07
178 179 5.949233 TCGTCGAAACATATCAACATGAG 57.051 39.130 0.00 0.00 0.00 2.90
179 180 4.803613 TCGTCGAAACATATCAACATGAGG 59.196 41.667 0.00 0.00 0.00 3.86
180 181 4.566759 CGTCGAAACATATCAACATGAGGT 59.433 41.667 0.00 0.00 0.00 3.85
181 182 5.276395 CGTCGAAACATATCAACATGAGGTC 60.276 44.000 0.00 0.00 0.00 3.85
182 183 5.812642 GTCGAAACATATCAACATGAGGTCT 59.187 40.000 0.00 0.00 0.00 3.85
183 184 6.978659 GTCGAAACATATCAACATGAGGTCTA 59.021 38.462 0.00 0.00 0.00 2.59
184 185 7.168302 GTCGAAACATATCAACATGAGGTCTAG 59.832 40.741 0.00 0.00 0.00 2.43
185 186 6.980978 CGAAACATATCAACATGAGGTCTAGT 59.019 38.462 0.00 0.00 0.00 2.57
186 187 7.492669 CGAAACATATCAACATGAGGTCTAGTT 59.507 37.037 0.00 0.00 0.00 2.24
187 188 9.167311 GAAACATATCAACATGAGGTCTAGTTT 57.833 33.333 0.00 3.10 0.00 2.66
188 189 9.520515 AAACATATCAACATGAGGTCTAGTTTT 57.479 29.630 0.00 0.00 0.00 2.43
189 190 8.498054 ACATATCAACATGAGGTCTAGTTTTG 57.502 34.615 0.00 0.00 0.00 2.44
190 191 8.321353 ACATATCAACATGAGGTCTAGTTTTGA 58.679 33.333 0.00 0.00 0.00 2.69
191 192 9.166173 CATATCAACATGAGGTCTAGTTTTGAA 57.834 33.333 0.00 0.00 0.00 2.69
192 193 7.678947 ATCAACATGAGGTCTAGTTTTGAAG 57.321 36.000 0.00 0.00 0.00 3.02
193 194 6.826668 TCAACATGAGGTCTAGTTTTGAAGA 58.173 36.000 0.00 0.00 0.00 2.87
194 195 7.453393 TCAACATGAGGTCTAGTTTTGAAGAT 58.547 34.615 0.00 0.00 0.00 2.40
195 196 7.604164 TCAACATGAGGTCTAGTTTTGAAGATC 59.396 37.037 0.00 0.00 0.00 2.75
196 197 7.251321 ACATGAGGTCTAGTTTTGAAGATCT 57.749 36.000 0.00 0.00 0.00 2.75
197 198 7.327214 ACATGAGGTCTAGTTTTGAAGATCTC 58.673 38.462 0.00 5.80 38.59 2.75
198 199 5.955488 TGAGGTCTAGTTTTGAAGATCTCG 58.045 41.667 0.00 0.00 40.38 4.04
199 200 5.477291 TGAGGTCTAGTTTTGAAGATCTCGT 59.523 40.000 0.00 0.00 40.38 4.18
200 201 5.956642 AGGTCTAGTTTTGAAGATCTCGTC 58.043 41.667 0.00 0.00 0.00 4.20
201 202 4.794246 GGTCTAGTTTTGAAGATCTCGTCG 59.206 45.833 0.00 0.00 0.00 5.12
202 203 5.391736 GGTCTAGTTTTGAAGATCTCGTCGA 60.392 44.000 0.00 0.00 0.00 4.20
203 204 5.735427 GTCTAGTTTTGAAGATCTCGTCGAG 59.265 44.000 16.33 16.33 0.00 4.04
204 205 4.768130 AGTTTTGAAGATCTCGTCGAGA 57.232 40.909 26.15 26.15 43.20 4.04
205 206 4.477780 AGTTTTGAAGATCTCGTCGAGAC 58.522 43.478 26.46 18.95 41.76 3.36
219 220 3.777478 GTCGAGACGGATTTAATGGTGA 58.223 45.455 0.00 0.00 0.00 4.02
220 221 4.178540 GTCGAGACGGATTTAATGGTGAA 58.821 43.478 0.00 0.00 0.00 3.18
221 222 4.628333 GTCGAGACGGATTTAATGGTGAAA 59.372 41.667 0.00 0.00 0.00 2.69
222 223 5.121142 GTCGAGACGGATTTAATGGTGAAAA 59.879 40.000 0.00 0.00 0.00 2.29
223 224 5.121142 TCGAGACGGATTTAATGGTGAAAAC 59.879 40.000 0.00 0.00 0.00 2.43
224 225 5.106869 CGAGACGGATTTAATGGTGAAAACA 60.107 40.000 0.00 0.00 0.00 2.83
225 226 6.254281 AGACGGATTTAATGGTGAAAACAG 57.746 37.500 0.00 0.00 0.00 3.16
226 227 6.001460 AGACGGATTTAATGGTGAAAACAGA 58.999 36.000 0.00 0.00 0.00 3.41
227 228 6.659242 AGACGGATTTAATGGTGAAAACAGAT 59.341 34.615 0.00 0.00 0.00 2.90
228 229 7.176690 AGACGGATTTAATGGTGAAAACAGATT 59.823 33.333 0.00 0.00 0.00 2.40
229 230 7.666623 ACGGATTTAATGGTGAAAACAGATTT 58.333 30.769 0.00 0.00 0.00 2.17
230 231 8.147704 ACGGATTTAATGGTGAAAACAGATTTT 58.852 29.630 0.00 0.00 40.83 1.82
231 232 8.987890 CGGATTTAATGGTGAAAACAGATTTTT 58.012 29.630 0.00 0.00 38.17 1.94
238 239 7.401484 TGGTGAAAACAGATTTTTAATTCGC 57.599 32.000 0.00 0.00 38.17 4.70
239 240 7.206687 TGGTGAAAACAGATTTTTAATTCGCT 58.793 30.769 0.00 0.00 38.17 4.93
240 241 7.708752 TGGTGAAAACAGATTTTTAATTCGCTT 59.291 29.630 0.00 0.00 38.17 4.68
241 242 8.547894 GGTGAAAACAGATTTTTAATTCGCTTT 58.452 29.630 0.00 0.00 38.17 3.51
242 243 9.914923 GTGAAAACAGATTTTTAATTCGCTTTT 57.085 25.926 0.00 0.00 38.17 2.27
281 282 7.929941 AAACATTTTTAAGCCAAAAACCAGA 57.070 28.000 8.31 0.00 46.19 3.86
282 283 7.929941 AACATTTTTAAGCCAAAAACCAGAA 57.070 28.000 8.31 0.00 46.19 3.02
283 284 7.929941 ACATTTTTAAGCCAAAAACCAGAAA 57.070 28.000 8.31 0.00 46.19 2.52
284 285 7.984391 ACATTTTTAAGCCAAAAACCAGAAAG 58.016 30.769 8.31 0.00 46.19 2.62
285 286 7.826744 ACATTTTTAAGCCAAAAACCAGAAAGA 59.173 29.630 8.31 0.00 46.19 2.52
286 287 8.839343 CATTTTTAAGCCAAAAACCAGAAAGAT 58.161 29.630 8.31 0.00 46.19 2.40
287 288 8.800370 TTTTTAAGCCAAAAACCAGAAAGATT 57.200 26.923 3.16 0.00 40.39 2.40
288 289 8.800370 TTTTAAGCCAAAAACCAGAAAGATTT 57.200 26.923 0.00 0.00 33.14 2.17
289 290 8.432110 TTTAAGCCAAAAACCAGAAAGATTTC 57.568 30.769 0.00 0.00 37.45 2.17
302 303 6.680874 AGAAAGATTTCTGCTGATGTCATC 57.319 37.500 7.02 5.83 45.27 2.92
303 304 6.416415 AGAAAGATTTCTGCTGATGTCATCT 58.584 36.000 13.90 2.28 45.27 2.90
304 305 6.316640 AGAAAGATTTCTGCTGATGTCATCTG 59.683 38.462 13.90 13.85 45.27 2.90
305 306 5.100344 AGATTTCTGCTGATGTCATCTGT 57.900 39.130 17.91 0.95 0.00 3.41
306 307 5.498393 AGATTTCTGCTGATGTCATCTGTT 58.502 37.500 17.91 1.31 0.00 3.16
307 308 5.585445 AGATTTCTGCTGATGTCATCTGTTC 59.415 40.000 17.91 6.13 0.00 3.18
308 309 3.967332 TCTGCTGATGTCATCTGTTCA 57.033 42.857 17.91 9.59 0.00 3.18
309 310 4.482952 TCTGCTGATGTCATCTGTTCAT 57.517 40.909 17.91 0.00 0.00 2.57
310 311 5.603170 TCTGCTGATGTCATCTGTTCATA 57.397 39.130 17.91 2.78 0.00 2.15
311 312 5.354767 TCTGCTGATGTCATCTGTTCATAC 58.645 41.667 17.91 4.40 0.00 2.39
312 313 4.114794 TGCTGATGTCATCTGTTCATACG 58.885 43.478 17.91 0.00 0.00 3.06
313 314 4.115516 GCTGATGTCATCTGTTCATACGT 58.884 43.478 17.91 0.00 0.00 3.57
314 315 4.026228 GCTGATGTCATCTGTTCATACGTG 60.026 45.833 17.91 0.00 0.00 4.49
315 316 4.432712 TGATGTCATCTGTTCATACGTGG 58.567 43.478 13.90 0.00 0.00 4.94
316 317 2.616960 TGTCATCTGTTCATACGTGGC 58.383 47.619 0.00 0.00 0.00 5.01
317 318 2.028567 TGTCATCTGTTCATACGTGGCA 60.029 45.455 0.00 0.00 0.00 4.92
318 319 3.000041 GTCATCTGTTCATACGTGGCAA 59.000 45.455 0.00 0.00 0.00 4.52
319 320 3.435327 GTCATCTGTTCATACGTGGCAAA 59.565 43.478 0.00 0.00 0.00 3.68
320 321 4.068599 TCATCTGTTCATACGTGGCAAAA 58.931 39.130 0.00 0.00 0.00 2.44
321 322 4.699735 TCATCTGTTCATACGTGGCAAAAT 59.300 37.500 0.00 0.00 0.00 1.82
322 323 4.418013 TCTGTTCATACGTGGCAAAATG 57.582 40.909 0.00 0.00 0.00 2.32
323 324 4.068599 TCTGTTCATACGTGGCAAAATGA 58.931 39.130 0.00 0.00 0.00 2.57
324 325 4.154015 TCTGTTCATACGTGGCAAAATGAG 59.846 41.667 0.00 0.00 30.53 2.90
325 326 3.818210 TGTTCATACGTGGCAAAATGAGT 59.182 39.130 0.00 0.00 30.53 3.41
326 327 4.158384 GTTCATACGTGGCAAAATGAGTG 58.842 43.478 0.00 0.00 30.53 3.51
327 328 2.746904 TCATACGTGGCAAAATGAGTGG 59.253 45.455 0.00 0.00 0.00 4.00
328 329 2.264005 TACGTGGCAAAATGAGTGGT 57.736 45.000 0.00 0.00 0.00 4.16
329 330 0.667993 ACGTGGCAAAATGAGTGGTG 59.332 50.000 0.00 0.00 0.00 4.17
330 331 0.950836 CGTGGCAAAATGAGTGGTGA 59.049 50.000 0.00 0.00 0.00 4.02
331 332 1.541147 CGTGGCAAAATGAGTGGTGAT 59.459 47.619 0.00 0.00 0.00 3.06
332 333 2.669113 CGTGGCAAAATGAGTGGTGATG 60.669 50.000 0.00 0.00 0.00 3.07
333 334 1.894466 TGGCAAAATGAGTGGTGATGG 59.106 47.619 0.00 0.00 0.00 3.51
334 335 2.170166 GGCAAAATGAGTGGTGATGGA 58.830 47.619 0.00 0.00 0.00 3.41
335 336 2.165030 GGCAAAATGAGTGGTGATGGAG 59.835 50.000 0.00 0.00 0.00 3.86
336 337 2.165030 GCAAAATGAGTGGTGATGGAGG 59.835 50.000 0.00 0.00 0.00 4.30
337 338 2.134789 AAATGAGTGGTGATGGAGGC 57.865 50.000 0.00 0.00 0.00 4.70
338 339 0.107508 AATGAGTGGTGATGGAGGCG 60.108 55.000 0.00 0.00 0.00 5.52
339 340 1.267574 ATGAGTGGTGATGGAGGCGT 61.268 55.000 0.00 0.00 0.00 5.68
340 341 1.448540 GAGTGGTGATGGAGGCGTG 60.449 63.158 0.00 0.00 0.00 5.34
341 342 2.172483 GAGTGGTGATGGAGGCGTGT 62.172 60.000 0.00 0.00 0.00 4.49
342 343 2.034879 GTGGTGATGGAGGCGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
343 344 2.436646 GGTGATGGAGGCGTGTGG 60.437 66.667 0.00 0.00 0.00 4.17
344 345 2.436646 GTGATGGAGGCGTGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
345 346 4.408821 TGATGGAGGCGTGTGGGC 62.409 66.667 0.00 0.00 42.69 5.36
352 353 3.192922 GGCGTGTGGGCGATGTAC 61.193 66.667 0.00 0.00 0.00 2.90
353 354 2.433491 GCGTGTGGGCGATGTACA 60.433 61.111 0.00 0.00 0.00 2.90
354 355 2.030401 GCGTGTGGGCGATGTACAA 61.030 57.895 0.00 0.00 0.00 2.41
355 356 1.570347 GCGTGTGGGCGATGTACAAA 61.570 55.000 0.00 0.00 0.00 2.83
356 357 1.083489 CGTGTGGGCGATGTACAAAT 58.917 50.000 0.00 0.00 0.00 2.32
357 358 1.202020 CGTGTGGGCGATGTACAAATG 60.202 52.381 0.00 0.00 0.00 2.32
358 359 0.808125 TGTGGGCGATGTACAAATGC 59.192 50.000 0.00 4.11 0.00 3.56
359 360 0.100503 GTGGGCGATGTACAAATGCC 59.899 55.000 21.68 21.68 44.98 4.40
361 362 2.487918 GGCGATGTACAAATGCCCA 58.512 52.632 20.03 0.00 39.83 5.36
362 363 0.100503 GGCGATGTACAAATGCCCAC 59.899 55.000 20.03 2.10 39.83 4.61
363 364 0.808125 GCGATGTACAAATGCCCACA 59.192 50.000 0.00 0.00 0.00 4.17
364 365 1.467374 GCGATGTACAAATGCCCACAC 60.467 52.381 0.00 0.00 0.00 3.82
365 366 1.202020 CGATGTACAAATGCCCACACG 60.202 52.381 0.00 0.00 0.00 4.49
366 367 1.810151 GATGTACAAATGCCCACACGT 59.190 47.619 0.00 0.00 0.00 4.49
367 368 0.947960 TGTACAAATGCCCACACGTG 59.052 50.000 15.48 15.48 0.00 4.49
368 369 0.948678 GTACAAATGCCCACACGTGT 59.051 50.000 17.22 17.22 32.44 4.49
369 370 0.947960 TACAAATGCCCACACGTGTG 59.052 50.000 36.13 36.13 45.23 3.82
377 378 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
378 379 1.300311 CACACGTGTGGGCGTTAGA 60.300 57.895 35.65 0.00 43.83 2.10
379 380 0.669318 CACACGTGTGGGCGTTAGAT 60.669 55.000 35.65 0.55 43.83 1.98
380 381 0.034337 ACACGTGTGGGCGTTAGATT 59.966 50.000 22.71 0.00 43.83 2.40
381 382 1.153353 CACGTGTGGGCGTTAGATTT 58.847 50.000 7.58 0.00 43.83 2.17
382 383 1.533731 CACGTGTGGGCGTTAGATTTT 59.466 47.619 7.58 0.00 43.83 1.82
383 384 1.802365 ACGTGTGGGCGTTAGATTTTC 59.198 47.619 0.00 0.00 43.04 2.29
384 385 1.129811 CGTGTGGGCGTTAGATTTTCC 59.870 52.381 0.00 0.00 0.00 3.13
385 386 1.129811 GTGTGGGCGTTAGATTTTCCG 59.870 52.381 0.00 0.00 0.00 4.30
392 393 4.538917 GGCGTTAGATTTTCCGAACAAAA 58.461 39.130 0.00 0.00 0.00 2.44
435 436 2.096496 CGGAAAAGCGCAATCATCTCTT 59.904 45.455 11.47 0.00 0.00 2.85
436 437 3.432782 GGAAAAGCGCAATCATCTCTTG 58.567 45.455 11.47 0.00 0.00 3.02
549 553 4.977741 TTAAGCAAGTGTACGTGTAAGC 57.022 40.909 0.00 0.00 0.00 3.09
550 554 2.814280 AGCAAGTGTACGTGTAAGCT 57.186 45.000 0.00 0.00 0.00 3.74
551 555 2.673833 AGCAAGTGTACGTGTAAGCTC 58.326 47.619 0.00 0.00 0.00 4.09
552 556 2.296471 AGCAAGTGTACGTGTAAGCTCT 59.704 45.455 0.00 0.00 0.00 4.09
559 563 0.169230 ACGTGTAAGCTCTCTCGCTG 59.831 55.000 10.79 0.00 40.79 5.18
562 566 1.227118 GTAAGCTCTCTCGCTGGGC 60.227 63.158 0.00 0.00 40.79 5.36
591 595 3.108289 CCGTCAGTGCTGAGTGCG 61.108 66.667 1.65 3.29 46.63 5.34
942 962 3.706373 CCGTCCCACCACCTCCTG 61.706 72.222 0.00 0.00 0.00 3.86
946 966 2.203998 CCCACCACCTCCTGGACT 60.204 66.667 0.00 0.00 43.95 3.85
952 972 4.316823 ACCTCCTGGACTCGGGCA 62.317 66.667 5.55 0.00 39.31 5.36
954 974 2.581354 CTCCTGGACTCGGGCAAG 59.419 66.667 0.00 0.00 39.31 4.01
968 988 2.338500 GGGCAAGTCGAAGTAGAACAG 58.662 52.381 0.00 0.00 0.00 3.16
994 1014 0.105453 AGAGTGGTCTGGTCAGGTGT 60.105 55.000 0.00 0.00 0.00 4.16
1272 1293 0.798776 CCTTGCTCGGCAACAAGTAG 59.201 55.000 7.15 0.00 43.99 2.57
1276 1297 1.362406 GCTCGGCAACAAGTAGGCTC 61.362 60.000 0.00 0.00 0.00 4.70
1277 1298 1.078759 CTCGGCAACAAGTAGGCTCG 61.079 60.000 0.00 0.00 0.00 5.03
1278 1299 2.740714 CGGCAACAAGTAGGCTCGC 61.741 63.158 0.00 0.00 0.00 5.03
1279 1300 2.399356 GGCAACAAGTAGGCTCGCC 61.399 63.158 0.00 0.00 0.00 5.54
1280 1301 2.740714 GCAACAAGTAGGCTCGCCG 61.741 63.158 1.69 0.00 41.95 6.46
1281 1302 1.374252 CAACAAGTAGGCTCGCCGT 60.374 57.895 1.69 0.00 41.95 5.68
1286 1307 1.859080 CAAGTAGGCTCGCCGTTAATC 59.141 52.381 1.69 0.00 41.95 1.75
1313 1334 2.221981 GCATTCGGTTCCGAGATTGATC 59.778 50.000 13.56 0.00 39.68 2.92
1442 1492 1.795286 GAACACGCACCTGAAGAAGAG 59.205 52.381 0.00 0.00 0.00 2.85
1560 1610 2.755876 ATGACGAGCAGCGAGGGA 60.756 61.111 5.99 0.00 44.57 4.20
1898 1948 2.925706 TACGACCAAGGCCAGCCA 60.926 61.111 12.03 0.00 38.92 4.75
1899 1949 2.521451 TACGACCAAGGCCAGCCAA 61.521 57.895 12.03 0.00 38.92 4.52
1902 1952 1.228552 GACCAAGGCCAGCCAAGAA 60.229 57.895 12.03 0.00 38.92 2.52
1927 1977 1.652563 GGAAACGAGTGGTGGTTGC 59.347 57.895 0.00 0.00 0.00 4.17
1933 1983 1.021390 CGAGTGGTGGTTGCAGGATC 61.021 60.000 0.00 0.00 0.00 3.36
2024 2074 2.901042 CTACCCGGGCCAACTCTC 59.099 66.667 24.08 0.00 0.00 3.20
2059 2109 2.039084 GACATGGTGATGGTATCCTCCC 59.961 54.545 0.00 0.00 33.39 4.30
2064 2114 0.345146 TGATGGTATCCTCCCACCCA 59.655 55.000 0.00 0.00 34.07 4.51
2247 2335 6.554334 TTGAAGGAATGAAAAGTTAGGTCG 57.446 37.500 0.00 0.00 0.00 4.79
2272 2360 0.531200 AGGCCAAGTAGCACGAGTAC 59.469 55.000 5.01 0.00 0.00 2.73
2284 2372 3.391955 AGCACGAGTACCTCTACTATCCT 59.608 47.826 0.00 0.00 32.96 3.24
2285 2373 4.592351 AGCACGAGTACCTCTACTATCCTA 59.408 45.833 0.00 0.00 32.96 2.94
2286 2374 5.248934 AGCACGAGTACCTCTACTATCCTAT 59.751 44.000 0.00 0.00 32.96 2.57
2288 2376 6.574859 GCACGAGTACCTCTACTATCCTATCT 60.575 46.154 0.00 0.00 32.96 1.98
2289 2377 7.363705 GCACGAGTACCTCTACTATCCTATCTA 60.364 44.444 0.00 0.00 32.96 1.98
2291 2379 8.752187 ACGAGTACCTCTACTATCCTATCTAAG 58.248 40.741 0.00 0.00 32.96 2.18
2292 2380 8.970020 CGAGTACCTCTACTATCCTATCTAAGA 58.030 40.741 0.00 0.00 32.96 2.10
2336 2462 1.072173 TGTATGCAACAGCACTCCACT 59.928 47.619 0.00 0.00 41.80 4.00
2359 2485 1.202687 TCAACAGCCAGTGAGAAGTGG 60.203 52.381 0.00 0.00 36.85 4.00
2396 2522 6.203647 CGTACGGATGTAGTATGTCATTTGA 58.796 40.000 7.57 0.00 0.00 2.69
2449 2575 7.810766 AAAATTGCGACTAATTTGTACCATG 57.189 32.000 6.33 0.00 39.48 3.66
2451 2577 3.339141 TGCGACTAATTTGTACCATGCA 58.661 40.909 0.00 0.00 0.00 3.96
2452 2578 3.944650 TGCGACTAATTTGTACCATGCAT 59.055 39.130 0.00 0.00 0.00 3.96
2453 2579 5.119694 TGCGACTAATTTGTACCATGCATA 58.880 37.500 0.00 0.00 0.00 3.14
2454 2580 5.762711 TGCGACTAATTTGTACCATGCATAT 59.237 36.000 0.00 0.00 0.00 1.78
2526 2655 3.199946 CCACCACTACTACCACCATCATT 59.800 47.826 0.00 0.00 0.00 2.57
2527 2656 4.407621 CCACCACTACTACCACCATCATTA 59.592 45.833 0.00 0.00 0.00 1.90
2528 2657 5.453339 CCACCACTACTACCACCATCATTAG 60.453 48.000 0.00 0.00 0.00 1.73
2623 2753 6.641169 AACCTTTTTCTTCTCCTTTAGCTG 57.359 37.500 0.00 0.00 0.00 4.24
2743 2878 2.178580 GTGAAATGGGAGCATGGGAAA 58.821 47.619 0.00 0.00 0.00 3.13
2744 2879 2.767960 GTGAAATGGGAGCATGGGAAAT 59.232 45.455 0.00 0.00 0.00 2.17
2745 2880 3.198417 GTGAAATGGGAGCATGGGAAATT 59.802 43.478 0.00 0.00 0.00 1.82
2746 2881 3.198200 TGAAATGGGAGCATGGGAAATTG 59.802 43.478 0.00 0.00 0.00 2.32
2747 2882 1.797320 ATGGGAGCATGGGAAATTGG 58.203 50.000 0.00 0.00 0.00 3.16
2748 2883 0.325484 TGGGAGCATGGGAAATTGGG 60.325 55.000 0.00 0.00 0.00 4.12
2749 2884 0.032217 GGGAGCATGGGAAATTGGGA 60.032 55.000 0.00 0.00 0.00 4.37
2750 2885 1.622173 GGGAGCATGGGAAATTGGGAA 60.622 52.381 0.00 0.00 0.00 3.97
2755 2890 2.761809 CATGGGAAATTGGGAATGGGA 58.238 47.619 0.00 0.00 0.00 4.37
2801 2936 6.112927 TCTGAATTTTAAGGGCTTGCATTT 57.887 33.333 0.00 0.00 0.00 2.32
2826 2961 0.457166 CAGAAACACCATGCGGCATG 60.457 55.000 31.02 31.02 41.10 4.06
2830 2965 0.525761 AACACCATGCGGCATGTTAC 59.474 50.000 33.70 0.00 39.94 2.50
2845 2980 6.403092 CGGCATGTTACTCATTGTTCATGTTA 60.403 38.462 0.00 0.00 39.52 2.41
2895 3030 4.379339 CCTTTTCAGGAAAACCGACAAA 57.621 40.909 3.19 0.00 44.19 2.83
2929 3064 3.873361 TGATGCCTCAATCTTTCGATGAC 59.127 43.478 0.00 0.00 0.00 3.06
2930 3065 3.333029 TGCCTCAATCTTTCGATGACA 57.667 42.857 0.00 0.00 0.00 3.58
2988 3123 2.449525 GCGACGATGTTGCGCCTTA 61.450 57.895 4.18 0.00 44.55 2.69
3007 3142 3.877801 GCAATCGCTAACAACTCGG 57.122 52.632 0.00 0.00 34.30 4.63
3011 3146 0.179145 ATCGCTAACAACTCGGACGG 60.179 55.000 0.00 0.00 0.00 4.79
3023 3158 2.895039 CGGACGGGTTATTGATCCG 58.105 57.895 0.00 0.00 45.61 4.18
3024 3159 0.599204 CGGACGGGTTATTGATCCGG 60.599 60.000 5.05 0.00 46.77 5.14
3068 3204 4.576216 TGTGCGGTGTTTCATAAAATGT 57.424 36.364 0.00 0.00 0.00 2.71
3069 3205 4.541779 TGTGCGGTGTTTCATAAAATGTC 58.458 39.130 0.00 0.00 0.00 3.06
3075 3211 6.611381 CGGTGTTTCATAAAATGTCTGATGT 58.389 36.000 0.00 0.00 0.00 3.06
3096 3232 8.642432 TGATGTTTGGTTTGTTGGATTTGTATA 58.358 29.630 0.00 0.00 0.00 1.47
3097 3233 9.651913 GATGTTTGGTTTGTTGGATTTGTATAT 57.348 29.630 0.00 0.00 0.00 0.86
3098 3234 9.651913 ATGTTTGGTTTGTTGGATTTGTATATC 57.348 29.630 0.00 0.00 0.00 1.63
3099 3235 7.810282 TGTTTGGTTTGTTGGATTTGTATATCG 59.190 33.333 0.00 0.00 0.00 2.92
3100 3236 7.689446 TTGGTTTGTTGGATTTGTATATCGA 57.311 32.000 0.00 0.00 0.00 3.59
3101 3237 7.079182 TGGTTTGTTGGATTTGTATATCGAC 57.921 36.000 0.00 0.00 0.00 4.20
3102 3238 6.183360 TGGTTTGTTGGATTTGTATATCGACG 60.183 38.462 0.00 0.00 0.00 5.12
3103 3239 6.036300 GGTTTGTTGGATTTGTATATCGACGA 59.964 38.462 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.927668 CCAGTACTTTGACCATGAAAATATTTT 57.072 29.630 13.24 13.24 0.00 1.82
4 5 9.308000 TCCAGTACTTTGACCATGAAAATATTT 57.692 29.630 0.00 0.00 0.00 1.40
5 6 8.877864 TCCAGTACTTTGACCATGAAAATATT 57.122 30.769 0.00 0.00 0.00 1.28
6 7 8.877864 TTCCAGTACTTTGACCATGAAAATAT 57.122 30.769 0.00 0.00 0.00 1.28
7 8 8.877864 ATTCCAGTACTTTGACCATGAAAATA 57.122 30.769 0.00 0.00 0.00 1.40
8 9 7.781324 ATTCCAGTACTTTGACCATGAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
9 10 7.432869 CAATTCCAGTACTTTGACCATGAAAA 58.567 34.615 0.00 0.00 0.00 2.29
10 11 6.516527 GCAATTCCAGTACTTTGACCATGAAA 60.517 38.462 8.83 0.00 0.00 2.69
11 12 5.048083 GCAATTCCAGTACTTTGACCATGAA 60.048 40.000 8.83 0.00 0.00 2.57
12 13 4.458989 GCAATTCCAGTACTTTGACCATGA 59.541 41.667 8.83 0.00 0.00 3.07
13 14 4.380867 GGCAATTCCAGTACTTTGACCATG 60.381 45.833 8.83 0.00 34.01 3.66
14 15 3.763897 GGCAATTCCAGTACTTTGACCAT 59.236 43.478 8.83 0.00 34.01 3.55
15 16 3.153919 GGCAATTCCAGTACTTTGACCA 58.846 45.455 8.83 0.00 34.01 4.02
16 17 3.153919 TGGCAATTCCAGTACTTTGACC 58.846 45.455 8.13 9.00 40.72 4.02
28 29 4.563976 CAGTTTTTCGATGATGGCAATTCC 59.436 41.667 0.00 0.00 0.00 3.01
29 30 5.401550 TCAGTTTTTCGATGATGGCAATTC 58.598 37.500 0.00 0.00 0.00 2.17
30 31 5.389859 TCAGTTTTTCGATGATGGCAATT 57.610 34.783 0.00 0.00 0.00 2.32
31 32 5.389859 TTCAGTTTTTCGATGATGGCAAT 57.610 34.783 0.00 0.00 0.00 3.56
32 33 4.844998 TTCAGTTTTTCGATGATGGCAA 57.155 36.364 0.00 0.00 0.00 4.52
33 34 4.844998 TTTCAGTTTTTCGATGATGGCA 57.155 36.364 0.00 0.00 0.00 4.92
34 35 5.445010 GCAATTTCAGTTTTTCGATGATGGC 60.445 40.000 0.00 0.00 0.00 4.40
35 36 5.062558 GGCAATTTCAGTTTTTCGATGATGG 59.937 40.000 0.00 0.00 0.00 3.51
36 37 5.634439 TGGCAATTTCAGTTTTTCGATGATG 59.366 36.000 0.00 0.00 0.00 3.07
37 38 5.782047 TGGCAATTTCAGTTTTTCGATGAT 58.218 33.333 0.00 0.00 0.00 2.45
38 39 5.193663 TGGCAATTTCAGTTTTTCGATGA 57.806 34.783 0.00 0.00 0.00 2.92
39 40 5.634439 TCATGGCAATTTCAGTTTTTCGATG 59.366 36.000 0.00 0.00 0.00 3.84
40 41 5.782047 TCATGGCAATTTCAGTTTTTCGAT 58.218 33.333 0.00 0.00 0.00 3.59
41 42 5.193663 TCATGGCAATTTCAGTTTTTCGA 57.806 34.783 0.00 0.00 0.00 3.71
42 43 5.865552 AGATCATGGCAATTTCAGTTTTTCG 59.134 36.000 0.00 0.00 0.00 3.46
43 44 7.814107 TGTAGATCATGGCAATTTCAGTTTTTC 59.186 33.333 0.00 0.00 0.00 2.29
44 45 7.669427 TGTAGATCATGGCAATTTCAGTTTTT 58.331 30.769 0.00 0.00 0.00 1.94
45 46 7.230849 TGTAGATCATGGCAATTTCAGTTTT 57.769 32.000 0.00 0.00 0.00 2.43
46 47 6.839124 TGTAGATCATGGCAATTTCAGTTT 57.161 33.333 0.00 0.00 0.00 2.66
47 48 6.839124 TTGTAGATCATGGCAATTTCAGTT 57.161 33.333 0.00 0.00 0.00 3.16
48 49 6.435277 AGTTTGTAGATCATGGCAATTTCAGT 59.565 34.615 0.00 0.00 0.00 3.41
49 50 6.860080 AGTTTGTAGATCATGGCAATTTCAG 58.140 36.000 0.00 0.00 0.00 3.02
50 51 6.839124 AGTTTGTAGATCATGGCAATTTCA 57.161 33.333 0.00 0.00 0.00 2.69
51 52 9.807649 ATTTAGTTTGTAGATCATGGCAATTTC 57.192 29.630 0.00 0.00 0.00 2.17
54 55 9.590451 CAAATTTAGTTTGTAGATCATGGCAAT 57.410 29.630 0.00 0.00 41.80 3.56
55 56 8.984891 CAAATTTAGTTTGTAGATCATGGCAA 57.015 30.769 0.00 0.00 41.80 4.52
81 82 4.923281 GCTTAAACTAAAGTTGCCATGTGG 59.077 41.667 0.00 0.00 38.44 4.17
82 83 5.402270 GTGCTTAAACTAAAGTTGCCATGTG 59.598 40.000 0.00 0.00 38.44 3.21
83 84 5.301805 AGTGCTTAAACTAAAGTTGCCATGT 59.698 36.000 0.00 0.00 38.44 3.21
84 85 5.772521 AGTGCTTAAACTAAAGTTGCCATG 58.227 37.500 0.00 0.00 38.44 3.66
85 86 7.362920 CCATAGTGCTTAAACTAAAGTTGCCAT 60.363 37.037 0.00 0.00 38.44 4.40
86 87 6.072175 CCATAGTGCTTAAACTAAAGTTGCCA 60.072 38.462 0.00 0.00 38.44 4.92
87 88 6.322491 CCATAGTGCTTAAACTAAAGTTGCC 58.678 40.000 0.00 0.00 38.44 4.52
88 89 5.800438 GCCATAGTGCTTAAACTAAAGTTGC 59.200 40.000 0.00 0.00 38.44 4.17
89 90 6.908825 TGCCATAGTGCTTAAACTAAAGTTG 58.091 36.000 0.00 0.00 38.44 3.16
90 91 7.230712 AGTTGCCATAGTGCTTAAACTAAAGTT 59.769 33.333 0.00 0.00 40.50 2.66
91 92 6.715264 AGTTGCCATAGTGCTTAAACTAAAGT 59.285 34.615 0.00 0.00 36.28 2.66
92 93 7.145932 AGTTGCCATAGTGCTTAAACTAAAG 57.854 36.000 0.00 0.00 36.28 1.85
93 94 7.662258 TGTAGTTGCCATAGTGCTTAAACTAAA 59.338 33.333 0.00 0.00 36.28 1.85
94 95 7.162761 TGTAGTTGCCATAGTGCTTAAACTAA 58.837 34.615 0.00 0.00 36.28 2.24
95 96 6.703319 TGTAGTTGCCATAGTGCTTAAACTA 58.297 36.000 0.00 0.00 37.08 2.24
96 97 5.556915 TGTAGTTGCCATAGTGCTTAAACT 58.443 37.500 0.00 0.00 32.07 2.66
97 98 5.411669 ACTGTAGTTGCCATAGTGCTTAAAC 59.588 40.000 0.00 0.00 0.00 2.01
98 99 5.411361 CACTGTAGTTGCCATAGTGCTTAAA 59.589 40.000 0.00 0.00 33.28 1.52
99 100 4.935205 CACTGTAGTTGCCATAGTGCTTAA 59.065 41.667 0.00 0.00 33.28 1.85
100 101 4.020573 ACACTGTAGTTGCCATAGTGCTTA 60.021 41.667 0.00 0.00 41.74 3.09
101 102 3.244561 ACACTGTAGTTGCCATAGTGCTT 60.245 43.478 0.00 0.00 41.74 3.91
102 103 2.303022 ACACTGTAGTTGCCATAGTGCT 59.697 45.455 0.00 0.00 41.74 4.40
103 104 2.699954 ACACTGTAGTTGCCATAGTGC 58.300 47.619 0.00 0.00 41.74 4.40
104 105 5.699001 TGTTTACACTGTAGTTGCCATAGTG 59.301 40.000 0.00 0.00 43.20 2.74
105 106 5.860611 TGTTTACACTGTAGTTGCCATAGT 58.139 37.500 0.00 0.00 0.00 2.12
106 107 6.985188 ATGTTTACACTGTAGTTGCCATAG 57.015 37.500 0.00 0.00 0.00 2.23
107 108 8.888716 CATAATGTTTACACTGTAGTTGCCATA 58.111 33.333 0.00 0.00 0.00 2.74
108 109 7.148086 CCATAATGTTTACACTGTAGTTGCCAT 60.148 37.037 0.00 0.00 0.00 4.40
109 110 6.150307 CCATAATGTTTACACTGTAGTTGCCA 59.850 38.462 0.00 0.00 0.00 4.92
110 111 6.551736 CCATAATGTTTACACTGTAGTTGCC 58.448 40.000 0.00 0.00 0.00 4.52
111 112 6.027749 GCCATAATGTTTACACTGTAGTTGC 58.972 40.000 0.00 0.00 0.00 4.17
112 113 7.139896 TGCCATAATGTTTACACTGTAGTTG 57.860 36.000 0.00 0.00 0.00 3.16
113 114 7.447238 AGTTGCCATAATGTTTACACTGTAGTT 59.553 33.333 0.00 0.00 0.00 2.24
114 115 6.940298 AGTTGCCATAATGTTTACACTGTAGT 59.060 34.615 0.00 0.00 0.00 2.73
115 116 7.377766 AGTTGCCATAATGTTTACACTGTAG 57.622 36.000 0.00 0.00 0.00 2.74
116 117 7.753309 AAGTTGCCATAATGTTTACACTGTA 57.247 32.000 0.00 0.00 0.00 2.74
117 118 6.648879 AAGTTGCCATAATGTTTACACTGT 57.351 33.333 0.00 0.00 0.00 3.55
118 119 7.095691 CCAAAAGTTGCCATAATGTTTACACTG 60.096 37.037 0.00 0.00 0.00 3.66
119 120 6.928492 CCAAAAGTTGCCATAATGTTTACACT 59.072 34.615 0.00 0.00 0.00 3.55
120 121 6.147000 CCCAAAAGTTGCCATAATGTTTACAC 59.853 38.462 0.00 0.00 0.00 2.90
121 122 6.183361 ACCCAAAAGTTGCCATAATGTTTACA 60.183 34.615 0.00 0.00 0.00 2.41
122 123 6.227522 ACCCAAAAGTTGCCATAATGTTTAC 58.772 36.000 0.00 0.00 0.00 2.01
123 124 6.426646 ACCCAAAAGTTGCCATAATGTTTA 57.573 33.333 0.00 0.00 0.00 2.01
124 125 5.303259 ACCCAAAAGTTGCCATAATGTTT 57.697 34.783 0.00 0.00 0.00 2.83
125 126 4.972751 ACCCAAAAGTTGCCATAATGTT 57.027 36.364 0.00 0.00 0.00 2.71
126 127 6.426646 TTTACCCAAAAGTTGCCATAATGT 57.573 33.333 0.00 0.00 0.00 2.71
127 128 7.736447 TTTTTACCCAAAAGTTGCCATAATG 57.264 32.000 0.00 0.00 35.15 1.90
150 151 8.849490 CATGTTGATATGTTTCGACGAATTTTT 58.151 29.630 11.71 0.03 33.42 1.94
151 152 8.233868 TCATGTTGATATGTTTCGACGAATTTT 58.766 29.630 11.71 1.80 33.42 1.82
152 153 7.747888 TCATGTTGATATGTTTCGACGAATTT 58.252 30.769 11.71 2.15 33.42 1.82
153 154 7.302350 TCATGTTGATATGTTTCGACGAATT 57.698 32.000 11.71 2.51 33.42 2.17
154 155 6.018751 CCTCATGTTGATATGTTTCGACGAAT 60.019 38.462 11.71 0.00 33.42 3.34
155 156 5.290885 CCTCATGTTGATATGTTTCGACGAA 59.709 40.000 6.10 6.10 33.42 3.85
156 157 4.803613 CCTCATGTTGATATGTTTCGACGA 59.196 41.667 0.00 0.00 33.42 4.20
157 158 4.566759 ACCTCATGTTGATATGTTTCGACG 59.433 41.667 0.00 0.00 33.42 5.12
158 159 5.812642 AGACCTCATGTTGATATGTTTCGAC 59.187 40.000 0.00 0.00 0.00 4.20
159 160 5.977635 AGACCTCATGTTGATATGTTTCGA 58.022 37.500 0.00 0.00 0.00 3.71
160 161 6.980978 ACTAGACCTCATGTTGATATGTTTCG 59.019 38.462 0.00 0.00 0.00 3.46
161 162 8.723942 AACTAGACCTCATGTTGATATGTTTC 57.276 34.615 0.00 0.00 0.00 2.78
162 163 9.520515 AAAACTAGACCTCATGTTGATATGTTT 57.479 29.630 0.00 0.00 0.00 2.83
163 164 8.950210 CAAAACTAGACCTCATGTTGATATGTT 58.050 33.333 0.00 0.00 0.00 2.71
164 165 8.321353 TCAAAACTAGACCTCATGTTGATATGT 58.679 33.333 0.00 0.00 0.00 2.29
165 166 8.722480 TCAAAACTAGACCTCATGTTGATATG 57.278 34.615 0.00 0.00 0.00 1.78
166 167 9.388506 CTTCAAAACTAGACCTCATGTTGATAT 57.611 33.333 0.00 0.00 0.00 1.63
167 168 8.593679 TCTTCAAAACTAGACCTCATGTTGATA 58.406 33.333 0.00 0.00 0.00 2.15
168 169 7.453393 TCTTCAAAACTAGACCTCATGTTGAT 58.547 34.615 0.00 0.00 0.00 2.57
169 170 6.826668 TCTTCAAAACTAGACCTCATGTTGA 58.173 36.000 0.00 0.00 0.00 3.18
170 171 7.605691 AGATCTTCAAAACTAGACCTCATGTTG 59.394 37.037 0.00 0.00 0.00 3.33
171 172 7.684529 AGATCTTCAAAACTAGACCTCATGTT 58.315 34.615 0.00 0.00 0.00 2.71
172 173 7.251321 AGATCTTCAAAACTAGACCTCATGT 57.749 36.000 0.00 0.00 0.00 3.21
173 174 6.475076 CGAGATCTTCAAAACTAGACCTCATG 59.525 42.308 0.00 0.00 0.00 3.07
174 175 6.153680 ACGAGATCTTCAAAACTAGACCTCAT 59.846 38.462 0.00 0.00 0.00 2.90
175 176 5.477291 ACGAGATCTTCAAAACTAGACCTCA 59.523 40.000 0.00 0.00 0.00 3.86
176 177 5.956642 ACGAGATCTTCAAAACTAGACCTC 58.043 41.667 0.00 0.00 0.00 3.85
177 178 5.392165 CGACGAGATCTTCAAAACTAGACCT 60.392 44.000 0.00 0.00 0.00 3.85
178 179 4.794246 CGACGAGATCTTCAAAACTAGACC 59.206 45.833 0.00 0.00 0.00 3.85
179 180 5.629097 TCGACGAGATCTTCAAAACTAGAC 58.371 41.667 0.00 0.00 0.00 2.59
180 181 5.642491 TCTCGACGAGATCTTCAAAACTAGA 59.358 40.000 23.27 0.00 33.35 2.43
181 182 5.735427 GTCTCGACGAGATCTTCAAAACTAG 59.265 44.000 28.81 0.00 40.98 2.57
182 183 5.629097 GTCTCGACGAGATCTTCAAAACTA 58.371 41.667 28.81 0.33 40.98 2.24
183 184 4.477780 GTCTCGACGAGATCTTCAAAACT 58.522 43.478 28.81 0.00 40.98 2.66
184 185 4.809455 GTCTCGACGAGATCTTCAAAAC 57.191 45.455 28.81 10.84 40.98 2.43
198 199 3.777478 TCACCATTAAATCCGTCTCGAC 58.223 45.455 0.00 0.00 0.00 4.20
199 200 4.459390 TTCACCATTAAATCCGTCTCGA 57.541 40.909 0.00 0.00 0.00 4.04
200 201 5.106869 TGTTTTCACCATTAAATCCGTCTCG 60.107 40.000 0.00 0.00 0.00 4.04
201 202 6.148811 TCTGTTTTCACCATTAAATCCGTCTC 59.851 38.462 0.00 0.00 0.00 3.36
202 203 6.001460 TCTGTTTTCACCATTAAATCCGTCT 58.999 36.000 0.00 0.00 0.00 4.18
203 204 6.249035 TCTGTTTTCACCATTAAATCCGTC 57.751 37.500 0.00 0.00 0.00 4.79
204 205 6.834168 ATCTGTTTTCACCATTAAATCCGT 57.166 33.333 0.00 0.00 0.00 4.69
205 206 8.532977 AAAATCTGTTTTCACCATTAAATCCG 57.467 30.769 0.00 0.00 32.14 4.18
212 213 8.495148 GCGAATTAAAAATCTGTTTTCACCATT 58.505 29.630 0.00 0.00 36.55 3.16
213 214 7.872483 AGCGAATTAAAAATCTGTTTTCACCAT 59.128 29.630 0.00 0.00 36.55 3.55
214 215 7.206687 AGCGAATTAAAAATCTGTTTTCACCA 58.793 30.769 0.00 0.00 36.55 4.17
215 216 7.637709 AGCGAATTAAAAATCTGTTTTCACC 57.362 32.000 0.00 0.00 36.55 4.02
216 217 9.914923 AAAAGCGAATTAAAAATCTGTTTTCAC 57.085 25.926 0.00 0.00 36.55 3.18
255 256 9.449719 TCTGGTTTTTGGCTTAAAAATGTTTTA 57.550 25.926 12.79 0.00 46.56 1.52
256 257 8.341892 TCTGGTTTTTGGCTTAAAAATGTTTT 57.658 26.923 12.79 0.00 46.56 2.43
257 258 7.929941 TCTGGTTTTTGGCTTAAAAATGTTT 57.070 28.000 12.79 0.00 46.56 2.83
258 259 7.929941 TTCTGGTTTTTGGCTTAAAAATGTT 57.070 28.000 12.79 0.00 46.56 2.71
259 260 7.826744 TCTTTCTGGTTTTTGGCTTAAAAATGT 59.173 29.630 12.79 0.00 46.56 2.71
260 261 8.207521 TCTTTCTGGTTTTTGGCTTAAAAATG 57.792 30.769 12.79 8.43 46.56 2.32
261 262 8.978874 ATCTTTCTGGTTTTTGGCTTAAAAAT 57.021 26.923 12.79 0.00 46.56 1.82
262 263 8.800370 AATCTTTCTGGTTTTTGGCTTAAAAA 57.200 26.923 7.68 7.68 43.88 1.94
263 264 8.800370 AAATCTTTCTGGTTTTTGGCTTAAAA 57.200 26.923 0.00 0.00 36.51 1.52
264 265 8.264347 AGAAATCTTTCTGGTTTTTGGCTTAAA 58.736 29.630 4.43 0.00 45.27 1.52
265 266 7.791029 AGAAATCTTTCTGGTTTTTGGCTTAA 58.209 30.769 4.43 0.00 45.27 1.85
266 267 7.360113 AGAAATCTTTCTGGTTTTTGGCTTA 57.640 32.000 4.43 0.00 45.27 3.09
267 268 6.239217 AGAAATCTTTCTGGTTTTTGGCTT 57.761 33.333 4.43 0.00 45.27 4.35
268 269 5.876651 AGAAATCTTTCTGGTTTTTGGCT 57.123 34.783 4.43 0.00 45.27 4.75
280 281 6.093771 ACAGATGACATCAGCAGAAATCTTTC 59.906 38.462 17.57 0.00 34.14 2.62
281 282 5.944599 ACAGATGACATCAGCAGAAATCTTT 59.055 36.000 17.57 0.00 34.14 2.52
282 283 5.498393 ACAGATGACATCAGCAGAAATCTT 58.502 37.500 17.57 0.00 34.14 2.40
283 284 5.100344 ACAGATGACATCAGCAGAAATCT 57.900 39.130 17.57 0.00 34.14 2.40
284 285 5.353400 TGAACAGATGACATCAGCAGAAATC 59.647 40.000 17.57 5.04 34.14 2.17
285 286 5.250982 TGAACAGATGACATCAGCAGAAAT 58.749 37.500 17.57 0.00 34.14 2.17
286 287 4.644498 TGAACAGATGACATCAGCAGAAA 58.356 39.130 17.57 0.00 34.14 2.52
287 288 4.276058 TGAACAGATGACATCAGCAGAA 57.724 40.909 17.57 0.00 34.14 3.02
288 289 3.967332 TGAACAGATGACATCAGCAGA 57.033 42.857 17.57 0.00 34.14 4.26
289 290 4.208666 CGTATGAACAGATGACATCAGCAG 59.791 45.833 17.57 6.89 34.14 4.24
290 291 4.114794 CGTATGAACAGATGACATCAGCA 58.885 43.478 17.57 9.50 34.14 4.41
291 292 4.026228 CACGTATGAACAGATGACATCAGC 60.026 45.833 17.57 4.42 0.00 4.26
292 293 4.505556 CCACGTATGAACAGATGACATCAG 59.494 45.833 17.57 11.95 0.00 2.90
293 294 4.432712 CCACGTATGAACAGATGACATCA 58.567 43.478 17.57 0.00 0.00 3.07
294 295 3.246226 GCCACGTATGAACAGATGACATC 59.754 47.826 7.39 7.39 0.00 3.06
295 296 3.198068 GCCACGTATGAACAGATGACAT 58.802 45.455 0.00 0.00 0.00 3.06
296 297 2.028567 TGCCACGTATGAACAGATGACA 60.029 45.455 0.00 0.00 0.00 3.58
297 298 2.616960 TGCCACGTATGAACAGATGAC 58.383 47.619 0.00 0.00 0.00 3.06
298 299 3.326836 TTGCCACGTATGAACAGATGA 57.673 42.857 0.00 0.00 0.00 2.92
299 300 4.418013 TTTTGCCACGTATGAACAGATG 57.582 40.909 0.00 0.00 0.00 2.90
300 301 4.699735 TCATTTTGCCACGTATGAACAGAT 59.300 37.500 0.00 0.00 0.00 2.90
301 302 4.068599 TCATTTTGCCACGTATGAACAGA 58.931 39.130 0.00 0.00 0.00 3.41
302 303 4.083324 ACTCATTTTGCCACGTATGAACAG 60.083 41.667 0.00 0.00 0.00 3.16
303 304 3.818210 ACTCATTTTGCCACGTATGAACA 59.182 39.130 0.00 0.00 0.00 3.18
304 305 4.158384 CACTCATTTTGCCACGTATGAAC 58.842 43.478 0.00 0.00 0.00 3.18
305 306 3.190327 CCACTCATTTTGCCACGTATGAA 59.810 43.478 0.00 0.00 0.00 2.57
306 307 2.746904 CCACTCATTTTGCCACGTATGA 59.253 45.455 0.00 0.00 0.00 2.15
307 308 2.487762 ACCACTCATTTTGCCACGTATG 59.512 45.455 0.00 0.00 0.00 2.39
308 309 2.487762 CACCACTCATTTTGCCACGTAT 59.512 45.455 0.00 0.00 0.00 3.06
309 310 1.876799 CACCACTCATTTTGCCACGTA 59.123 47.619 0.00 0.00 0.00 3.57
310 311 0.667993 CACCACTCATTTTGCCACGT 59.332 50.000 0.00 0.00 0.00 4.49
311 312 0.950836 TCACCACTCATTTTGCCACG 59.049 50.000 0.00 0.00 0.00 4.94
312 313 2.353011 CCATCACCACTCATTTTGCCAC 60.353 50.000 0.00 0.00 0.00 5.01
313 314 1.894466 CCATCACCACTCATTTTGCCA 59.106 47.619 0.00 0.00 0.00 4.92
314 315 2.165030 CTCCATCACCACTCATTTTGCC 59.835 50.000 0.00 0.00 0.00 4.52
315 316 2.165030 CCTCCATCACCACTCATTTTGC 59.835 50.000 0.00 0.00 0.00 3.68
316 317 2.165030 GCCTCCATCACCACTCATTTTG 59.835 50.000 0.00 0.00 0.00 2.44
317 318 2.450476 GCCTCCATCACCACTCATTTT 58.550 47.619 0.00 0.00 0.00 1.82
318 319 1.679944 CGCCTCCATCACCACTCATTT 60.680 52.381 0.00 0.00 0.00 2.32
319 320 0.107508 CGCCTCCATCACCACTCATT 60.108 55.000 0.00 0.00 0.00 2.57
320 321 1.267574 ACGCCTCCATCACCACTCAT 61.268 55.000 0.00 0.00 0.00 2.90
321 322 1.913262 ACGCCTCCATCACCACTCA 60.913 57.895 0.00 0.00 0.00 3.41
322 323 1.448540 CACGCCTCCATCACCACTC 60.449 63.158 0.00 0.00 0.00 3.51
323 324 2.217038 ACACGCCTCCATCACCACT 61.217 57.895 0.00 0.00 0.00 4.00
324 325 2.034879 CACACGCCTCCATCACCAC 61.035 63.158 0.00 0.00 0.00 4.16
325 326 2.347114 CACACGCCTCCATCACCA 59.653 61.111 0.00 0.00 0.00 4.17
326 327 2.436646 CCACACGCCTCCATCACC 60.437 66.667 0.00 0.00 0.00 4.02
327 328 2.436646 CCCACACGCCTCCATCAC 60.437 66.667 0.00 0.00 0.00 3.06
328 329 4.408821 GCCCACACGCCTCCATCA 62.409 66.667 0.00 0.00 0.00 3.07
333 334 3.365291 TACATCGCCCACACGCCTC 62.365 63.158 0.00 0.00 0.00 4.70
334 335 3.387091 TACATCGCCCACACGCCT 61.387 61.111 0.00 0.00 0.00 5.52
335 336 3.192922 GTACATCGCCCACACGCC 61.193 66.667 0.00 0.00 0.00 5.68
336 337 1.570347 TTTGTACATCGCCCACACGC 61.570 55.000 0.00 0.00 0.00 5.34
337 338 1.083489 ATTTGTACATCGCCCACACG 58.917 50.000 0.00 0.00 0.00 4.49
338 339 1.467374 GCATTTGTACATCGCCCACAC 60.467 52.381 0.00 0.00 0.00 3.82
339 340 0.808125 GCATTTGTACATCGCCCACA 59.192 50.000 0.00 0.00 0.00 4.17
340 341 0.100503 GGCATTTGTACATCGCCCAC 59.899 55.000 16.18 0.00 36.73 4.61
341 342 2.487918 GGCATTTGTACATCGCCCA 58.512 52.632 16.18 0.00 36.73 5.36
343 344 0.100503 GTGGGCATTTGTACATCGCC 59.899 55.000 17.95 17.95 42.21 5.54
344 345 0.808125 TGTGGGCATTTGTACATCGC 59.192 50.000 0.00 0.00 0.00 4.58
345 346 1.202020 CGTGTGGGCATTTGTACATCG 60.202 52.381 0.00 0.00 0.00 3.84
346 347 1.810151 ACGTGTGGGCATTTGTACATC 59.190 47.619 0.00 0.00 0.00 3.06
347 348 1.539388 CACGTGTGGGCATTTGTACAT 59.461 47.619 7.58 0.00 0.00 2.29
348 349 0.947960 CACGTGTGGGCATTTGTACA 59.052 50.000 7.58 0.00 0.00 2.90
349 350 0.948678 ACACGTGTGGGCATTTGTAC 59.051 50.000 22.71 0.00 34.19 2.90
350 351 0.947960 CACACGTGTGGGCATTTGTA 59.052 50.000 35.65 0.00 42.10 2.41
351 352 1.732917 CACACGTGTGGGCATTTGT 59.267 52.632 35.65 1.12 42.10 2.83
352 353 4.632037 CACACGTGTGGGCATTTG 57.368 55.556 35.65 12.14 42.10 2.32
364 365 1.129811 GGAAAATCTAACGCCCACACG 59.870 52.381 0.00 0.00 39.50 4.49
365 366 1.129811 CGGAAAATCTAACGCCCACAC 59.870 52.381 0.00 0.00 0.00 3.82
366 367 1.002201 TCGGAAAATCTAACGCCCACA 59.998 47.619 0.00 0.00 0.00 4.17
367 368 1.729284 TCGGAAAATCTAACGCCCAC 58.271 50.000 0.00 0.00 0.00 4.61
368 369 2.078392 GTTCGGAAAATCTAACGCCCA 58.922 47.619 0.00 0.00 0.00 5.36
369 370 2.078392 TGTTCGGAAAATCTAACGCCC 58.922 47.619 0.00 0.00 0.00 6.13
370 371 3.817148 TTGTTCGGAAAATCTAACGCC 57.183 42.857 0.00 0.00 0.00 5.68
392 393 5.594317 CCGGGACTAAATGAAATGGATCTTT 59.406 40.000 0.00 0.00 0.00 2.52
409 410 1.303317 ATTGCGCTTTTCCGGGACT 60.303 52.632 9.73 0.00 0.00 3.85
410 411 1.136774 GATTGCGCTTTTCCGGGAC 59.863 57.895 9.73 0.00 0.00 4.46
435 436 2.534042 TTGAGTGGTTGGGGAAAACA 57.466 45.000 0.00 0.00 31.20 2.83
436 437 3.897141 TTTTGAGTGGTTGGGGAAAAC 57.103 42.857 0.00 0.00 0.00 2.43
487 491 1.977854 TGTTCTCTGCAGCCCTTTCTA 59.022 47.619 9.47 0.00 0.00 2.10
591 595 3.065371 CCGTTGTTAATCAGGAAGGATGC 59.935 47.826 0.00 0.00 0.00 3.91
594 598 3.618997 GCTCCGTTGTTAATCAGGAAGGA 60.619 47.826 0.00 0.00 0.00 3.36
595 599 2.678336 GCTCCGTTGTTAATCAGGAAGG 59.322 50.000 0.00 0.00 0.00 3.46
596 600 3.334691 TGCTCCGTTGTTAATCAGGAAG 58.665 45.455 0.00 0.00 0.00 3.46
597 601 3.334691 CTGCTCCGTTGTTAATCAGGAA 58.665 45.455 0.00 0.00 0.00 3.36
942 962 1.446272 CTTCGACTTGCCCGAGTCC 60.446 63.158 9.50 0.00 42.41 3.85
946 966 1.068055 GTTCTACTTCGACTTGCCCGA 60.068 52.381 0.00 0.00 0.00 5.14
952 972 1.884579 TCGCCTGTTCTACTTCGACTT 59.115 47.619 0.00 0.00 0.00 3.01
954 974 1.897641 CTCGCCTGTTCTACTTCGAC 58.102 55.000 0.00 0.00 0.00 4.20
968 988 2.125753 CAGACCACTCTGCTCGCC 60.126 66.667 0.00 0.00 37.72 5.54
994 1014 3.311110 GCCTCGCCCCATATCGGA 61.311 66.667 0.00 0.00 36.56 4.55
1272 1293 3.014856 GCAGATTAACGGCGAGCC 58.985 61.111 16.62 3.59 0.00 4.70
1277 1298 0.098728 AATGCACGCAGATTAACGGC 59.901 50.000 0.00 0.00 36.41 5.68
1278 1299 1.592110 CGAATGCACGCAGATTAACGG 60.592 52.381 0.00 0.00 0.00 4.44
1279 1300 1.592110 CCGAATGCACGCAGATTAACG 60.592 52.381 0.00 0.00 0.00 3.18
1280 1301 1.396996 ACCGAATGCACGCAGATTAAC 59.603 47.619 0.00 0.00 0.00 2.01
1281 1302 1.732941 ACCGAATGCACGCAGATTAA 58.267 45.000 0.00 0.00 0.00 1.40
1286 1307 2.480555 GGAACCGAATGCACGCAG 59.519 61.111 0.00 0.00 0.00 5.18
1313 1334 6.088483 CAGAACACACCAAAATCAATCAATCG 59.912 38.462 0.00 0.00 0.00 3.34
1550 1600 2.892425 CGTTGGATCCCTCGCTGC 60.892 66.667 9.90 0.00 0.00 5.25
1843 1893 2.433491 TTGTTGTAGGCGCGCGAT 60.433 55.556 37.18 23.62 0.00 4.58
1898 1948 2.300437 CACTCGTTTCCCTCCTCTTCTT 59.700 50.000 0.00 0.00 0.00 2.52
1899 1949 1.896465 CACTCGTTTCCCTCCTCTTCT 59.104 52.381 0.00 0.00 0.00 2.85
1902 1952 0.178929 ACCACTCGTTTCCCTCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
1927 1977 2.100584 CGAGTTCCTTCTCCAGATCCTG 59.899 54.545 0.00 0.00 0.00 3.86
1933 1983 1.219393 GGCCGAGTTCCTTCTCCAG 59.781 63.158 0.00 0.00 0.00 3.86
2059 2109 1.219124 CCGATCTGGACTGTGGGTG 59.781 63.158 0.00 0.00 42.00 4.61
2134 2184 2.276201 TGTAATGTTTGATCTCGGGCG 58.724 47.619 0.00 0.00 0.00 6.13
2137 2187 5.411361 TCCAAGTTGTAATGTTTGATCTCGG 59.589 40.000 1.45 0.00 0.00 4.63
2209 2297 7.546316 TCATTCCTTCAATTTGTATGTGCATTG 59.454 33.333 0.00 0.00 0.00 2.82
2247 2335 1.933853 CGTGCTACTTGGCCTTGTATC 59.066 52.381 3.32 3.55 0.00 2.24
2286 2374 9.268268 CACAGTACATTTGGTTAAACTCTTAGA 57.732 33.333 0.00 0.00 0.00 2.10
2288 2376 7.040961 GCCACAGTACATTTGGTTAAACTCTTA 60.041 37.037 8.67 0.00 32.50 2.10
2289 2377 6.238925 GCCACAGTACATTTGGTTAAACTCTT 60.239 38.462 8.67 0.00 32.50 2.85
2291 2379 5.009210 TGCCACAGTACATTTGGTTAAACTC 59.991 40.000 8.67 0.00 32.50 3.01
2292 2380 4.890581 TGCCACAGTACATTTGGTTAAACT 59.109 37.500 8.67 0.00 32.50 2.66
2293 2381 5.189659 TGCCACAGTACATTTGGTTAAAC 57.810 39.130 8.67 0.00 32.50 2.01
2336 2462 2.369860 ACTTCTCACTGGCTGTTGATCA 59.630 45.455 0.00 0.00 0.00 2.92
2526 2655 5.415701 GGTGATGATTCTTCAAAAGGCACTA 59.584 40.000 4.00 0.00 33.60 2.74
2527 2656 4.219288 GGTGATGATTCTTCAAAAGGCACT 59.781 41.667 4.00 0.00 35.91 4.40
2528 2657 4.488879 GGTGATGATTCTTCAAAAGGCAC 58.511 43.478 4.00 0.00 34.96 5.01
2743 2878 4.659835 CCAAAATATGGTCCCATTCCCAAT 59.340 41.667 3.76 0.00 44.85 3.16
2744 2879 4.036518 CCAAAATATGGTCCCATTCCCAA 58.963 43.478 3.76 0.00 44.85 4.12
2745 2880 3.652055 CCAAAATATGGTCCCATTCCCA 58.348 45.455 3.76 0.00 44.85 4.37
2801 2936 2.293122 CCGCATGGTGTTTCTGAAAAGA 59.707 45.455 4.09 0.00 0.00 2.52
2819 2954 2.161410 TGAACAATGAGTAACATGCCGC 59.839 45.455 0.00 0.00 39.39 6.53
2895 3030 3.877559 TGAGGCATCAGTTGAATCGAAT 58.122 40.909 0.00 0.00 0.00 3.34
2905 3040 3.616956 TCGAAAGATTGAGGCATCAGT 57.383 42.857 0.00 0.00 33.42 3.41
2930 3065 4.940654 CCACCCAAATTGACAAAGTGTTTT 59.059 37.500 0.00 0.00 0.00 2.43
3007 3142 1.578583 CACCGGATCAATAACCCGTC 58.421 55.000 9.46 0.00 41.53 4.79
3011 3146 2.021457 CCAACCACCGGATCAATAACC 58.979 52.381 9.46 0.00 0.00 2.85
3023 3158 0.036294 GTGAGTCCTAGCCAACCACC 60.036 60.000 0.00 0.00 0.00 4.61
3024 3159 0.389948 CGTGAGTCCTAGCCAACCAC 60.390 60.000 0.00 0.00 0.00 4.16
3068 3204 5.867903 AATCCAACAAACCAAACATCAGA 57.132 34.783 0.00 0.00 0.00 3.27
3069 3205 5.816777 ACAAATCCAACAAACCAAACATCAG 59.183 36.000 0.00 0.00 0.00 2.90
3075 3211 8.024285 GTCGATATACAAATCCAACAAACCAAA 58.976 33.333 0.00 0.00 0.00 3.28



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.