Multiple sequence alignment - TraesCS6D01G240300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G240300 chr6D 100.000 2790 0 0 1 2790 342000707 341997918 0.000000e+00 5153
1 TraesCS6D01G240300 chr6D 84.327 453 55 6 72 513 411719152 411719599 1.990000e-116 429
2 TraesCS6D01G240300 chr6A 89.672 1617 67 42 533 2095 482080631 482079061 0.000000e+00 1969
3 TraesCS6D01G240300 chr6A 90.881 647 40 9 2157 2790 482078923 482078283 0.000000e+00 850
4 TraesCS6D01G240300 chr6A 87.109 256 27 4 2534 2787 478015084 478014833 4.550000e-73 285
5 TraesCS6D01G240300 chr6B 91.814 1075 61 12 1032 2095 516476831 516475773 0.000000e+00 1472
6 TraesCS6D01G240300 chr6B 85.224 379 37 10 2141 2517 516475640 516475279 3.390000e-99 372
7 TraesCS6D01G240300 chr6B 81.971 416 32 12 649 1032 516478362 516477958 2.090000e-81 313
8 TraesCS6D01G240300 chr1D 85.618 445 49 11 80 513 106203839 106204279 1.180000e-123 453
9 TraesCS6D01G240300 chr1D 84.701 451 52 9 77 515 107111019 107111464 4.270000e-118 435
10 TraesCS6D01G240300 chr2B 85.393 445 49 7 80 513 165123482 165123043 5.480000e-122 448
11 TraesCS6D01G240300 chr2B 86.641 262 32 3 2531 2790 599602132 599602392 1.260000e-73 287
12 TraesCS6D01G240300 chr1B 85.111 450 51 6 76 513 659526422 659525977 1.970000e-121 446
13 TraesCS6D01G240300 chr1B 85.660 265 35 3 2528 2790 368571094 368571357 2.740000e-70 276
14 TraesCS6D01G240300 chr5D 84.735 452 51 12 72 513 390345997 390345554 1.190000e-118 436
15 TraesCS6D01G240300 chr5D 84.787 447 51 8 77 511 195600318 195600759 1.530000e-117 433
16 TraesCS6D01G240300 chr5D 84.361 454 55 7 71 513 525634755 525635203 5.520000e-117 431
17 TraesCS6D01G240300 chr5D 84.324 185 26 3 2335 2517 134146539 134146722 7.940000e-41 178
18 TraesCS6D01G240300 chr2D 84.396 455 56 6 71 514 35322308 35321858 1.530000e-117 433
19 TraesCS6D01G240300 chr5B 87.259 259 30 2 2532 2787 530653383 530653641 2.720000e-75 292
20 TraesCS6D01G240300 chr3D 87.308 260 28 5 2534 2790 417156457 417156714 2.720000e-75 292
21 TraesCS6D01G240300 chr3D 87.550 249 29 2 2544 2790 29528948 29528700 1.260000e-73 287
22 TraesCS6D01G240300 chrUn 87.149 249 30 2 2544 2790 223002366 223002118 5.880000e-72 281
23 TraesCS6D01G240300 chr2A 86.260 262 31 4 2532 2790 69301457 69301198 2.120000e-71 279
24 TraesCS6D01G240300 chr2A 83.152 184 29 2 2335 2517 686652690 686652508 1.720000e-37 167
25 TraesCS6D01G240300 chr7B 85.246 183 23 4 2336 2516 244663297 244663117 4.750000e-43 185
26 TraesCS6D01G240300 chr7A 84.783 184 25 3 2336 2517 10388211 10388029 6.140000e-42 182
27 TraesCS6D01G240300 chr3A 83.784 185 27 3 2335 2517 487574301 487574484 3.690000e-39 172
28 TraesCS6D01G240300 chr4A 83.696 184 27 3 2336 2517 157110018 157110200 1.330000e-38 171
29 TraesCS6D01G240300 chr1A 80.952 189 31 5 2333 2517 93515694 93515881 8.050000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G240300 chr6D 341997918 342000707 2789 True 5153.0 5153 100.000000 1 2790 1 chr6D.!!$R1 2789
1 TraesCS6D01G240300 chr6A 482078283 482080631 2348 True 1409.5 1969 90.276500 533 2790 2 chr6A.!!$R2 2257
2 TraesCS6D01G240300 chr6B 516475279 516478362 3083 True 719.0 1472 86.336333 649 2517 3 chr6B.!!$R1 1868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.030638 GTCGAGAGAGCAGATGCCTC 59.969 60.0 12.59 12.59 43.49 4.70 F
196 197 0.036306 GTTTTTGGGGAGCCTCTCGA 59.964 55.0 0.00 0.00 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1029 2203 0.105658 CGGGGGAGGAACAGAGGATA 60.106 60.0 0.0 0.0 0.0 2.59 R
1845 3046 1.148310 CACTAGCCAAACACGACCAG 58.852 55.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.359107 ACGAGTCGCTACACCCGA 60.359 61.111 13.59 0.00 0.00 5.14
21 22 3.741476 GTCGCTACACCCGACGGT 61.741 66.667 13.94 0.00 44.40 4.83
22 23 3.434319 TCGCTACACCCGACGGTC 61.434 66.667 13.94 0.00 42.04 4.79
23 24 3.437795 CGCTACACCCGACGGTCT 61.438 66.667 13.94 0.00 42.04 3.85
24 25 2.108514 CGCTACACCCGACGGTCTA 61.109 63.158 13.94 0.00 42.04 2.59
25 26 1.442526 CGCTACACCCGACGGTCTAT 61.443 60.000 13.94 0.00 42.04 1.98
26 27 1.597742 GCTACACCCGACGGTCTATA 58.402 55.000 13.94 0.00 42.04 1.31
27 28 2.157738 GCTACACCCGACGGTCTATAT 58.842 52.381 13.94 0.00 42.04 0.86
28 29 2.161211 GCTACACCCGACGGTCTATATC 59.839 54.545 13.94 0.00 42.04 1.63
29 30 2.353357 ACACCCGACGGTCTATATCA 57.647 50.000 13.94 0.00 42.04 2.15
30 31 2.228059 ACACCCGACGGTCTATATCAG 58.772 52.381 13.94 0.00 42.04 2.90
31 32 2.228059 CACCCGACGGTCTATATCAGT 58.772 52.381 13.94 0.00 42.04 3.41
32 33 2.621998 CACCCGACGGTCTATATCAGTT 59.378 50.000 13.94 0.00 42.04 3.16
33 34 2.883386 ACCCGACGGTCTATATCAGTTC 59.117 50.000 13.94 0.00 38.28 3.01
34 35 2.882761 CCCGACGGTCTATATCAGTTCA 59.117 50.000 13.94 0.00 0.00 3.18
35 36 3.317149 CCCGACGGTCTATATCAGTTCAA 59.683 47.826 13.94 0.00 0.00 2.69
36 37 4.022242 CCCGACGGTCTATATCAGTTCAAT 60.022 45.833 13.94 0.00 0.00 2.57
37 38 5.154932 CCGACGGTCTATATCAGTTCAATC 58.845 45.833 5.48 0.00 0.00 2.67
38 39 5.278315 CCGACGGTCTATATCAGTTCAATCA 60.278 44.000 5.48 0.00 0.00 2.57
39 40 5.625721 CGACGGTCTATATCAGTTCAATCAC 59.374 44.000 6.57 0.00 0.00 3.06
40 41 6.513556 CGACGGTCTATATCAGTTCAATCACT 60.514 42.308 6.57 0.00 0.00 3.41
41 42 6.740110 ACGGTCTATATCAGTTCAATCACTC 58.260 40.000 0.00 0.00 0.00 3.51
42 43 6.153067 CGGTCTATATCAGTTCAATCACTCC 58.847 44.000 0.00 0.00 0.00 3.85
43 44 6.459923 GGTCTATATCAGTTCAATCACTCCC 58.540 44.000 0.00 0.00 0.00 4.30
44 45 6.268847 GGTCTATATCAGTTCAATCACTCCCT 59.731 42.308 0.00 0.00 0.00 4.20
45 46 7.375053 GTCTATATCAGTTCAATCACTCCCTC 58.625 42.308 0.00 0.00 0.00 4.30
46 47 7.232534 GTCTATATCAGTTCAATCACTCCCTCT 59.767 40.741 0.00 0.00 0.00 3.69
47 48 6.821616 ATATCAGTTCAATCACTCCCTCTT 57.178 37.500 0.00 0.00 0.00 2.85
48 49 4.982241 TCAGTTCAATCACTCCCTCTTT 57.018 40.909 0.00 0.00 0.00 2.52
49 50 4.899502 TCAGTTCAATCACTCCCTCTTTC 58.100 43.478 0.00 0.00 0.00 2.62
50 51 4.347876 TCAGTTCAATCACTCCCTCTTTCA 59.652 41.667 0.00 0.00 0.00 2.69
51 52 4.453819 CAGTTCAATCACTCCCTCTTTCAC 59.546 45.833 0.00 0.00 0.00 3.18
52 53 4.103153 AGTTCAATCACTCCCTCTTTCACA 59.897 41.667 0.00 0.00 0.00 3.58
53 54 4.705110 TCAATCACTCCCTCTTTCACAA 57.295 40.909 0.00 0.00 0.00 3.33
54 55 4.389374 TCAATCACTCCCTCTTTCACAAC 58.611 43.478 0.00 0.00 0.00 3.32
55 56 4.103153 TCAATCACTCCCTCTTTCACAACT 59.897 41.667 0.00 0.00 0.00 3.16
56 57 3.753294 TCACTCCCTCTTTCACAACTC 57.247 47.619 0.00 0.00 0.00 3.01
57 58 3.309296 TCACTCCCTCTTTCACAACTCT 58.691 45.455 0.00 0.00 0.00 3.24
58 59 4.480115 TCACTCCCTCTTTCACAACTCTA 58.520 43.478 0.00 0.00 0.00 2.43
59 60 4.524714 TCACTCCCTCTTTCACAACTCTAG 59.475 45.833 0.00 0.00 0.00 2.43
60 61 3.259625 ACTCCCTCTTTCACAACTCTAGC 59.740 47.826 0.00 0.00 0.00 3.42
61 62 2.567615 TCCCTCTTTCACAACTCTAGCC 59.432 50.000 0.00 0.00 0.00 3.93
62 63 2.303022 CCCTCTTTCACAACTCTAGCCA 59.697 50.000 0.00 0.00 0.00 4.75
63 64 3.054802 CCCTCTTTCACAACTCTAGCCAT 60.055 47.826 0.00 0.00 0.00 4.40
64 65 4.187694 CCTCTTTCACAACTCTAGCCATC 58.812 47.826 0.00 0.00 0.00 3.51
65 66 4.323028 CCTCTTTCACAACTCTAGCCATCA 60.323 45.833 0.00 0.00 0.00 3.07
66 67 5.426504 CTCTTTCACAACTCTAGCCATCAT 58.573 41.667 0.00 0.00 0.00 2.45
67 68 5.423015 TCTTTCACAACTCTAGCCATCATC 58.577 41.667 0.00 0.00 0.00 2.92
68 69 5.188555 TCTTTCACAACTCTAGCCATCATCT 59.811 40.000 0.00 0.00 0.00 2.90
69 70 6.381133 TCTTTCACAACTCTAGCCATCATCTA 59.619 38.462 0.00 0.00 0.00 1.98
70 71 5.521906 TCACAACTCTAGCCATCATCTAC 57.478 43.478 0.00 0.00 0.00 2.59
71 72 5.204292 TCACAACTCTAGCCATCATCTACT 58.796 41.667 0.00 0.00 0.00 2.57
72 73 5.068329 TCACAACTCTAGCCATCATCTACTG 59.932 44.000 0.00 0.00 0.00 2.74
73 74 4.202202 ACAACTCTAGCCATCATCTACTGC 60.202 45.833 0.00 0.00 0.00 4.40
74 75 3.843422 ACTCTAGCCATCATCTACTGCT 58.157 45.455 0.00 0.00 36.11 4.24
75 76 4.222336 ACTCTAGCCATCATCTACTGCTT 58.778 43.478 0.00 0.00 33.63 3.91
76 77 4.653341 ACTCTAGCCATCATCTACTGCTTT 59.347 41.667 0.00 0.00 33.63 3.51
77 78 5.207110 TCTAGCCATCATCTACTGCTTTC 57.793 43.478 0.00 0.00 33.63 2.62
78 79 3.205784 AGCCATCATCTACTGCTTTCC 57.794 47.619 0.00 0.00 0.00 3.13
79 80 1.869767 GCCATCATCTACTGCTTTCCG 59.130 52.381 0.00 0.00 0.00 4.30
80 81 1.869767 CCATCATCTACTGCTTTCCGC 59.130 52.381 0.00 0.00 39.77 5.54
81 82 1.524355 CATCATCTACTGCTTTCCGCG 59.476 52.381 0.00 0.00 43.27 6.46
82 83 0.815095 TCATCTACTGCTTTCCGCGA 59.185 50.000 8.23 0.00 43.27 5.87
83 84 1.409064 TCATCTACTGCTTTCCGCGAT 59.591 47.619 8.23 0.00 43.27 4.58
84 85 1.789464 CATCTACTGCTTTCCGCGATC 59.211 52.381 8.23 0.00 43.27 3.69
85 86 0.102481 TCTACTGCTTTCCGCGATCC 59.898 55.000 8.23 0.00 43.27 3.36
86 87 0.876342 CTACTGCTTTCCGCGATCCC 60.876 60.000 8.23 0.00 43.27 3.85
87 88 1.609635 TACTGCTTTCCGCGATCCCA 61.610 55.000 8.23 0.00 43.27 4.37
88 89 1.524621 CTGCTTTCCGCGATCCCAT 60.525 57.895 8.23 0.00 43.27 4.00
89 90 1.502163 CTGCTTTCCGCGATCCCATC 61.502 60.000 8.23 0.00 43.27 3.51
90 91 2.254464 GCTTTCCGCGATCCCATCC 61.254 63.158 8.23 0.00 0.00 3.51
91 92 1.598130 CTTTCCGCGATCCCATCCC 60.598 63.158 8.23 0.00 0.00 3.85
92 93 3.454587 TTTCCGCGATCCCATCCCG 62.455 63.158 8.23 0.00 0.00 5.14
93 94 4.906537 TCCGCGATCCCATCCCGA 62.907 66.667 8.23 0.00 32.62 5.14
94 95 3.695606 CCGCGATCCCATCCCGAT 61.696 66.667 8.23 0.00 32.62 4.18
95 96 2.433145 CGCGATCCCATCCCGATG 60.433 66.667 0.00 0.00 38.51 3.84
96 97 2.931068 CGCGATCCCATCCCGATGA 61.931 63.158 0.00 0.00 41.20 2.92
97 98 1.374758 GCGATCCCATCCCGATGAC 60.375 63.158 6.25 0.00 41.20 3.06
98 99 1.293498 CGATCCCATCCCGATGACC 59.707 63.158 6.25 0.00 41.20 4.02
99 100 1.293498 GATCCCATCCCGATGACCG 59.707 63.158 6.25 0.00 41.20 4.79
100 101 2.788191 GATCCCATCCCGATGACCGC 62.788 65.000 6.25 0.00 41.20 5.68
101 102 4.969196 CCCATCCCGATGACCGCG 62.969 72.222 0.00 0.00 41.20 6.46
102 103 4.221422 CCATCCCGATGACCGCGT 62.221 66.667 4.92 0.00 41.20 6.01
103 104 2.961721 CATCCCGATGACCGCGTG 60.962 66.667 4.92 0.00 41.20 5.34
104 105 4.891727 ATCCCGATGACCGCGTGC 62.892 66.667 4.92 0.00 36.84 5.34
107 108 2.279186 CCGATGACCGCGTGCATA 60.279 61.111 4.92 0.00 36.84 3.14
108 109 2.302952 CCGATGACCGCGTGCATAG 61.303 63.158 4.92 8.36 36.84 2.23
109 110 1.588932 CGATGACCGCGTGCATAGT 60.589 57.895 4.92 0.00 0.00 2.12
110 111 1.145759 CGATGACCGCGTGCATAGTT 61.146 55.000 4.92 0.00 0.00 2.24
111 112 0.301687 GATGACCGCGTGCATAGTTG 59.698 55.000 4.92 0.00 0.00 3.16
112 113 1.089481 ATGACCGCGTGCATAGTTGG 61.089 55.000 4.92 0.00 0.00 3.77
113 114 1.740296 GACCGCGTGCATAGTTGGT 60.740 57.895 4.92 0.08 0.00 3.67
114 115 1.693083 GACCGCGTGCATAGTTGGTC 61.693 60.000 4.92 16.39 39.10 4.02
115 116 2.695055 CGCGTGCATAGTTGGTCG 59.305 61.111 0.00 0.00 0.00 4.79
116 117 1.803922 CGCGTGCATAGTTGGTCGA 60.804 57.895 0.00 0.00 0.00 4.20
117 118 1.742900 CGCGTGCATAGTTGGTCGAG 61.743 60.000 0.00 0.00 0.00 4.04
118 119 0.457853 GCGTGCATAGTTGGTCGAGA 60.458 55.000 0.00 0.00 0.00 4.04
119 120 1.550065 CGTGCATAGTTGGTCGAGAG 58.450 55.000 0.00 0.00 0.00 3.20
120 121 1.132453 CGTGCATAGTTGGTCGAGAGA 59.868 52.381 0.00 0.00 38.16 3.10
121 122 2.792890 CGTGCATAGTTGGTCGAGAGAG 60.793 54.545 0.00 0.00 43.49 3.20
129 130 4.728058 GTCGAGAGAGCAGATGCC 57.272 61.111 0.14 0.00 43.49 4.40
130 131 2.114638 GTCGAGAGAGCAGATGCCT 58.885 57.895 0.14 0.00 43.49 4.75
131 132 0.030638 GTCGAGAGAGCAGATGCCTC 59.969 60.000 12.59 12.59 43.49 4.70
132 133 1.106351 TCGAGAGAGCAGATGCCTCC 61.106 60.000 15.34 9.14 43.38 4.30
133 134 1.363443 GAGAGAGCAGATGCCTCCG 59.637 63.158 15.34 0.00 43.38 4.63
134 135 2.086251 GAGAGAGCAGATGCCTCCGG 62.086 65.000 15.34 0.00 43.38 5.14
135 136 2.042537 AGAGCAGATGCCTCCGGA 60.043 61.111 2.93 2.93 43.38 5.14
136 137 1.680522 GAGAGCAGATGCCTCCGGAA 61.681 60.000 5.23 0.00 43.38 4.30
137 138 1.522580 GAGCAGATGCCTCCGGAAC 60.523 63.158 5.23 0.48 43.38 3.62
138 139 2.514824 GCAGATGCCTCCGGAACC 60.515 66.667 5.23 0.00 34.31 3.62
139 140 2.190578 CAGATGCCTCCGGAACCC 59.809 66.667 5.23 0.00 0.00 4.11
140 141 2.041265 AGATGCCTCCGGAACCCT 59.959 61.111 5.23 0.00 0.00 4.34
141 142 2.190578 GATGCCTCCGGAACCCTG 59.809 66.667 5.23 0.00 0.00 4.45
142 143 2.610859 ATGCCTCCGGAACCCTGT 60.611 61.111 5.23 0.00 0.00 4.00
143 144 2.595009 GATGCCTCCGGAACCCTGTC 62.595 65.000 5.23 0.00 0.00 3.51
144 145 4.452733 GCCTCCGGAACCCTGTCG 62.453 72.222 5.23 0.00 0.00 4.35
145 146 2.995574 CCTCCGGAACCCTGTCGT 60.996 66.667 5.23 0.00 0.00 4.34
146 147 2.580601 CCTCCGGAACCCTGTCGTT 61.581 63.158 5.23 0.00 0.00 3.85
147 148 1.080025 CTCCGGAACCCTGTCGTTC 60.080 63.158 5.23 0.00 41.21 3.95
148 149 2.431942 CCGGAACCCTGTCGTTCG 60.432 66.667 0.00 0.00 42.57 3.95
149 150 2.646719 CGGAACCCTGTCGTTCGA 59.353 61.111 0.00 0.00 42.57 3.71
150 151 1.443872 CGGAACCCTGTCGTTCGAG 60.444 63.158 0.00 0.00 42.57 4.04
151 152 1.859427 CGGAACCCTGTCGTTCGAGA 61.859 60.000 0.00 0.00 42.57 4.04
152 153 0.531200 GGAACCCTGTCGTTCGAGAT 59.469 55.000 0.00 0.00 42.57 2.75
153 154 1.747355 GGAACCCTGTCGTTCGAGATA 59.253 52.381 0.00 0.00 42.57 1.98
154 155 2.361438 GGAACCCTGTCGTTCGAGATAT 59.639 50.000 0.00 0.00 42.57 1.63
155 156 3.181478 GGAACCCTGTCGTTCGAGATATT 60.181 47.826 0.00 0.00 42.57 1.28
156 157 3.438297 ACCCTGTCGTTCGAGATATTG 57.562 47.619 0.00 0.00 0.00 1.90
157 158 2.128035 CCCTGTCGTTCGAGATATTGC 58.872 52.381 0.00 0.00 0.00 3.56
158 159 1.781429 CCTGTCGTTCGAGATATTGCG 59.219 52.381 0.00 0.00 0.00 4.85
159 160 1.188138 CTGTCGTTCGAGATATTGCGC 59.812 52.381 0.00 0.00 0.00 6.09
160 161 0.156857 GTCGTTCGAGATATTGCGCG 59.843 55.000 0.00 0.00 0.00 6.86
161 162 0.933047 TCGTTCGAGATATTGCGCGG 60.933 55.000 8.83 0.00 0.00 6.46
162 163 1.853319 GTTCGAGATATTGCGCGGG 59.147 57.895 8.83 0.00 0.00 6.13
163 164 0.596600 GTTCGAGATATTGCGCGGGA 60.597 55.000 8.83 0.00 0.00 5.14
164 165 0.318699 TTCGAGATATTGCGCGGGAG 60.319 55.000 8.83 0.00 0.00 4.30
165 166 1.170290 TCGAGATATTGCGCGGGAGA 61.170 55.000 8.83 0.00 0.00 3.71
166 167 0.318699 CGAGATATTGCGCGGGAGAA 60.319 55.000 8.83 0.00 0.00 2.87
167 168 1.140816 GAGATATTGCGCGGGAGAAC 58.859 55.000 8.83 0.00 0.00 3.01
168 169 0.597637 AGATATTGCGCGGGAGAACG 60.598 55.000 8.83 0.00 0.00 3.95
169 170 1.557443 GATATTGCGCGGGAGAACGG 61.557 60.000 8.83 0.00 0.00 4.44
174 175 2.202824 CGCGGGAGAACGGCAATA 60.203 61.111 0.00 0.00 44.87 1.90
175 176 1.812093 CGCGGGAGAACGGCAATAA 60.812 57.895 0.00 0.00 44.87 1.40
176 177 1.762222 CGCGGGAGAACGGCAATAAG 61.762 60.000 0.00 0.00 44.87 1.73
177 178 1.436983 GCGGGAGAACGGCAATAAGG 61.437 60.000 0.00 0.00 44.12 2.69
178 179 0.107848 CGGGAGAACGGCAATAAGGT 60.108 55.000 0.00 0.00 0.00 3.50
179 180 1.677820 CGGGAGAACGGCAATAAGGTT 60.678 52.381 0.00 0.00 0.00 3.50
180 181 2.443416 GGGAGAACGGCAATAAGGTTT 58.557 47.619 0.00 0.00 0.00 3.27
181 182 2.823747 GGGAGAACGGCAATAAGGTTTT 59.176 45.455 0.00 0.00 0.00 2.43
182 183 3.257375 GGGAGAACGGCAATAAGGTTTTT 59.743 43.478 0.00 0.00 0.00 1.94
183 184 4.234574 GGAGAACGGCAATAAGGTTTTTG 58.765 43.478 0.00 0.00 0.00 2.44
184 185 4.234574 GAGAACGGCAATAAGGTTTTTGG 58.765 43.478 0.00 0.00 0.00 3.28
185 186 3.006430 AGAACGGCAATAAGGTTTTTGGG 59.994 43.478 0.00 0.00 0.00 4.12
186 187 1.621317 ACGGCAATAAGGTTTTTGGGG 59.379 47.619 0.00 0.00 0.00 4.96
187 188 1.896465 CGGCAATAAGGTTTTTGGGGA 59.104 47.619 0.00 0.00 0.00 4.81
188 189 2.094234 CGGCAATAAGGTTTTTGGGGAG 60.094 50.000 0.00 0.00 0.00 4.30
189 190 2.354704 GGCAATAAGGTTTTTGGGGAGC 60.355 50.000 0.00 0.00 0.00 4.70
190 191 2.354704 GCAATAAGGTTTTTGGGGAGCC 60.355 50.000 0.00 0.00 0.00 4.70
191 192 3.173151 CAATAAGGTTTTTGGGGAGCCT 58.827 45.455 0.00 0.00 0.00 4.58
192 193 2.597578 TAAGGTTTTTGGGGAGCCTC 57.402 50.000 0.00 0.00 0.00 4.70
193 194 0.860457 AAGGTTTTTGGGGAGCCTCT 59.140 50.000 0.00 0.00 0.00 3.69
194 195 0.405973 AGGTTTTTGGGGAGCCTCTC 59.594 55.000 0.00 0.00 0.00 3.20
195 196 0.960861 GGTTTTTGGGGAGCCTCTCG 60.961 60.000 0.00 0.00 0.00 4.04
196 197 0.036306 GTTTTTGGGGAGCCTCTCGA 59.964 55.000 0.00 0.00 0.00 4.04
197 198 0.036306 TTTTTGGGGAGCCTCTCGAC 59.964 55.000 0.00 0.00 0.00 4.20
198 199 2.167398 TTTTGGGGAGCCTCTCGACG 62.167 60.000 0.00 0.00 0.00 5.12
202 203 4.539881 GGAGCCTCTCGACGCGAC 62.540 72.222 15.93 5.54 0.00 5.19
203 204 3.501548 GAGCCTCTCGACGCGACT 61.502 66.667 15.93 0.00 0.00 4.18
204 205 3.726631 GAGCCTCTCGACGCGACTG 62.727 68.421 15.93 3.31 0.00 3.51
206 207 3.805307 CCTCTCGACGCGACTGCT 61.805 66.667 15.93 0.00 39.65 4.24
207 208 2.276994 CTCTCGACGCGACTGCTC 60.277 66.667 15.93 0.00 39.65 4.26
208 209 2.742760 TCTCGACGCGACTGCTCT 60.743 61.111 15.93 0.00 39.65 4.09
209 210 2.276994 CTCGACGCGACTGCTCTC 60.277 66.667 15.93 0.00 39.65 3.20
210 211 4.148645 TCGACGCGACTGCTCTCG 62.149 66.667 15.93 10.29 39.17 4.04
211 212 4.148645 CGACGCGACTGCTCTCGA 62.149 66.667 15.93 0.00 39.81 4.04
212 213 2.405594 GACGCGACTGCTCTCGAT 59.594 61.111 15.93 0.00 39.65 3.59
213 214 1.652930 GACGCGACTGCTCTCGATC 60.653 63.158 15.93 0.00 39.65 3.69
214 215 2.352915 CGCGACTGCTCTCGATCC 60.353 66.667 0.00 0.00 39.65 3.36
215 216 2.352915 GCGACTGCTCTCGATCCG 60.353 66.667 7.66 0.00 38.39 4.18
216 217 3.102985 CGACTGCTCTCGATCCGT 58.897 61.111 0.00 0.00 35.58 4.69
217 218 1.010574 CGACTGCTCTCGATCCGTC 60.011 63.158 0.00 0.00 35.58 4.79
218 219 1.357334 GACTGCTCTCGATCCGTCC 59.643 63.158 0.00 0.00 0.00 4.79
219 220 2.065906 GACTGCTCTCGATCCGTCCC 62.066 65.000 0.00 0.00 0.00 4.46
220 221 1.826054 CTGCTCTCGATCCGTCCCT 60.826 63.158 0.00 0.00 0.00 4.20
221 222 1.791103 CTGCTCTCGATCCGTCCCTC 61.791 65.000 0.00 0.00 0.00 4.30
222 223 1.527380 GCTCTCGATCCGTCCCTCT 60.527 63.158 0.00 0.00 0.00 3.69
223 224 1.512156 GCTCTCGATCCGTCCCTCTC 61.512 65.000 0.00 0.00 0.00 3.20
224 225 0.107831 CTCTCGATCCGTCCCTCTCT 59.892 60.000 0.00 0.00 0.00 3.10
225 226 1.345089 CTCTCGATCCGTCCCTCTCTA 59.655 57.143 0.00 0.00 0.00 2.43
226 227 1.070445 TCTCGATCCGTCCCTCTCTAC 59.930 57.143 0.00 0.00 0.00 2.59
227 228 0.249784 TCGATCCGTCCCTCTCTACG 60.250 60.000 0.00 0.00 38.80 3.51
228 229 0.532417 CGATCCGTCCCTCTCTACGT 60.532 60.000 0.00 0.00 37.40 3.57
229 230 1.228533 GATCCGTCCCTCTCTACGTC 58.771 60.000 0.00 0.00 37.40 4.34
230 231 0.179023 ATCCGTCCCTCTCTACGTCC 60.179 60.000 0.00 0.00 37.40 4.79
231 232 2.178890 CCGTCCCTCTCTACGTCCG 61.179 68.421 0.00 0.00 37.40 4.79
232 233 1.449246 CGTCCCTCTCTACGTCCGT 60.449 63.158 0.00 0.00 34.48 4.69
233 234 1.427592 CGTCCCTCTCTACGTCCGTC 61.428 65.000 0.00 0.00 34.48 4.79
234 235 0.107752 GTCCCTCTCTACGTCCGTCT 60.108 60.000 0.00 0.00 0.00 4.18
235 236 0.177604 TCCCTCTCTACGTCCGTCTC 59.822 60.000 0.00 0.00 0.00 3.36
236 237 0.178533 CCCTCTCTACGTCCGTCTCT 59.821 60.000 0.00 0.00 0.00 3.10
237 238 1.292061 CCTCTCTACGTCCGTCTCTG 58.708 60.000 0.00 0.00 0.00 3.35
238 239 0.653636 CTCTCTACGTCCGTCTCTGC 59.346 60.000 0.00 0.00 0.00 4.26
239 240 0.249676 TCTCTACGTCCGTCTCTGCT 59.750 55.000 0.00 0.00 0.00 4.24
240 241 1.088306 CTCTACGTCCGTCTCTGCTT 58.912 55.000 0.00 0.00 0.00 3.91
241 242 1.469308 CTCTACGTCCGTCTCTGCTTT 59.531 52.381 0.00 0.00 0.00 3.51
242 243 1.467734 TCTACGTCCGTCTCTGCTTTC 59.532 52.381 0.00 0.00 0.00 2.62
243 244 1.199327 CTACGTCCGTCTCTGCTTTCA 59.801 52.381 0.00 0.00 0.00 2.69
244 245 0.318784 ACGTCCGTCTCTGCTTTCAC 60.319 55.000 0.00 0.00 0.00 3.18
245 246 0.039074 CGTCCGTCTCTGCTTTCACT 60.039 55.000 0.00 0.00 0.00 3.41
246 247 1.603172 CGTCCGTCTCTGCTTTCACTT 60.603 52.381 0.00 0.00 0.00 3.16
247 248 2.062519 GTCCGTCTCTGCTTTCACTTC 58.937 52.381 0.00 0.00 0.00 3.01
248 249 1.964223 TCCGTCTCTGCTTTCACTTCT 59.036 47.619 0.00 0.00 0.00 2.85
249 250 2.365617 TCCGTCTCTGCTTTCACTTCTT 59.634 45.455 0.00 0.00 0.00 2.52
250 251 2.734079 CCGTCTCTGCTTTCACTTCTTC 59.266 50.000 0.00 0.00 0.00 2.87
251 252 2.734079 CGTCTCTGCTTTCACTTCTTCC 59.266 50.000 0.00 0.00 0.00 3.46
252 253 3.553922 CGTCTCTGCTTTCACTTCTTCCT 60.554 47.826 0.00 0.00 0.00 3.36
253 254 3.993736 GTCTCTGCTTTCACTTCTTCCTC 59.006 47.826 0.00 0.00 0.00 3.71
254 255 3.007398 TCTCTGCTTTCACTTCTTCCTCC 59.993 47.826 0.00 0.00 0.00 4.30
255 256 2.072298 CTGCTTTCACTTCTTCCTCCG 58.928 52.381 0.00 0.00 0.00 4.63
256 257 0.799393 GCTTTCACTTCTTCCTCCGC 59.201 55.000 0.00 0.00 0.00 5.54
257 258 1.071605 CTTTCACTTCTTCCTCCGCG 58.928 55.000 0.00 0.00 0.00 6.46
258 259 0.391597 TTTCACTTCTTCCTCCGCGT 59.608 50.000 4.92 0.00 0.00 6.01
259 260 0.038526 TTCACTTCTTCCTCCGCGTC 60.039 55.000 4.92 0.00 0.00 5.19
260 261 1.801913 CACTTCTTCCTCCGCGTCG 60.802 63.158 4.92 0.00 0.00 5.12
261 262 1.970114 ACTTCTTCCTCCGCGTCGA 60.970 57.895 4.92 0.00 0.00 4.20
262 263 1.514443 CTTCTTCCTCCGCGTCGAC 60.514 63.158 5.18 5.18 0.00 4.20
263 264 1.924320 CTTCTTCCTCCGCGTCGACT 61.924 60.000 14.70 0.00 0.00 4.18
264 265 1.521450 TTCTTCCTCCGCGTCGACTT 61.521 55.000 14.70 0.00 0.00 3.01
265 266 1.801913 CTTCCTCCGCGTCGACTTG 60.802 63.158 14.70 5.44 0.00 3.16
266 267 3.277211 TTCCTCCGCGTCGACTTGG 62.277 63.158 14.70 14.75 0.00 3.61
268 269 4.421479 CTCCGCGTCGACTTGGCT 62.421 66.667 14.70 0.00 0.00 4.75
269 270 4.717629 TCCGCGTCGACTTGGCTG 62.718 66.667 14.70 6.50 0.00 4.85
270 271 4.717629 CCGCGTCGACTTGGCTGA 62.718 66.667 14.70 0.00 0.00 4.26
271 272 3.470567 CGCGTCGACTTGGCTGAC 61.471 66.667 14.70 0.00 0.00 3.51
272 273 2.355837 GCGTCGACTTGGCTGACA 60.356 61.111 14.70 0.00 32.91 3.58
273 274 1.954146 GCGTCGACTTGGCTGACAA 60.954 57.895 14.70 0.00 37.55 3.18
274 275 1.853319 CGTCGACTTGGCTGACAAC 59.147 57.895 14.70 0.00 34.76 3.32
275 276 1.853319 GTCGACTTGGCTGACAACG 59.147 57.895 8.70 0.00 34.76 4.10
276 277 0.596600 GTCGACTTGGCTGACAACGA 60.597 55.000 8.70 5.00 35.88 3.85
277 278 0.103390 TCGACTTGGCTGACAACGAA 59.897 50.000 6.49 0.00 35.49 3.85
278 279 0.508641 CGACTTGGCTGACAACGAAG 59.491 55.000 0.34 0.00 34.76 3.79
279 280 0.235926 GACTTGGCTGACAACGAAGC 59.764 55.000 0.00 0.00 38.76 3.86
283 284 4.090057 GCTGACAACGAAGCCGCC 62.090 66.667 0.00 0.00 39.95 6.13
284 285 2.664851 CTGACAACGAAGCCGCCA 60.665 61.111 0.00 0.00 39.95 5.69
285 286 2.203084 TGACAACGAAGCCGCCAA 60.203 55.556 0.00 0.00 39.95 4.52
286 287 2.175184 CTGACAACGAAGCCGCCAAG 62.175 60.000 0.00 0.00 39.95 3.61
287 288 1.959226 GACAACGAAGCCGCCAAGA 60.959 57.895 0.00 0.00 39.95 3.02
288 289 1.503818 GACAACGAAGCCGCCAAGAA 61.504 55.000 0.00 0.00 39.95 2.52
289 290 1.207593 CAACGAAGCCGCCAAGAAG 59.792 57.895 0.00 0.00 39.95 2.85
290 291 1.070786 AACGAAGCCGCCAAGAAGA 59.929 52.632 0.00 0.00 39.95 2.87
291 292 0.534203 AACGAAGCCGCCAAGAAGAA 60.534 50.000 0.00 0.00 39.95 2.52
292 293 0.951040 ACGAAGCCGCCAAGAAGAAG 60.951 55.000 0.00 0.00 39.95 2.85
293 294 1.639298 CGAAGCCGCCAAGAAGAAGG 61.639 60.000 0.00 0.00 0.00 3.46
298 299 3.896479 GCCAAGAAGAAGGCCTCG 58.104 61.111 5.23 0.00 45.18 4.63
299 300 1.746991 GCCAAGAAGAAGGCCTCGG 60.747 63.158 5.23 0.00 45.18 4.63
300 301 1.746991 CCAAGAAGAAGGCCTCGGC 60.747 63.158 5.23 0.00 41.06 5.54
369 370 1.605753 CGGAGGATATGACTCGTCCA 58.394 55.000 11.91 0.00 46.06 4.02
370 371 2.163509 CGGAGGATATGACTCGTCCAT 58.836 52.381 11.91 0.00 46.06 3.41
371 372 2.162608 CGGAGGATATGACTCGTCCATC 59.837 54.545 11.91 2.47 46.06 3.51
372 373 3.426615 GGAGGATATGACTCGTCCATCT 58.573 50.000 7.70 0.00 45.40 2.90
373 374 3.442273 GGAGGATATGACTCGTCCATCTC 59.558 52.174 7.70 0.00 45.40 2.75
374 375 4.331968 GAGGATATGACTCGTCCATCTCT 58.668 47.826 7.99 5.05 34.42 3.10
375 376 4.735369 AGGATATGACTCGTCCATCTCTT 58.265 43.478 7.99 0.00 34.42 2.85
376 377 5.882040 AGGATATGACTCGTCCATCTCTTA 58.118 41.667 7.99 0.00 34.42 2.10
377 378 5.943416 AGGATATGACTCGTCCATCTCTTAG 59.057 44.000 7.99 0.00 34.42 2.18
378 379 5.392595 GGATATGACTCGTCCATCTCTTAGC 60.393 48.000 7.99 0.00 32.23 3.09
379 380 3.006112 TGACTCGTCCATCTCTTAGCT 57.994 47.619 0.00 0.00 0.00 3.32
380 381 2.685388 TGACTCGTCCATCTCTTAGCTG 59.315 50.000 0.00 0.00 0.00 4.24
381 382 1.407258 ACTCGTCCATCTCTTAGCTGC 59.593 52.381 0.00 0.00 0.00 5.25
382 383 1.680735 CTCGTCCATCTCTTAGCTGCT 59.319 52.381 7.57 7.57 0.00 4.24
383 384 1.678627 TCGTCCATCTCTTAGCTGCTC 59.321 52.381 4.91 0.00 0.00 4.26
384 385 1.406898 CGTCCATCTCTTAGCTGCTCA 59.593 52.381 4.91 0.00 0.00 4.26
385 386 2.035704 CGTCCATCTCTTAGCTGCTCAT 59.964 50.000 4.91 0.00 0.00 2.90
386 387 3.492309 CGTCCATCTCTTAGCTGCTCATT 60.492 47.826 4.91 0.00 0.00 2.57
387 388 4.057432 GTCCATCTCTTAGCTGCTCATTC 58.943 47.826 4.91 0.00 0.00 2.67
388 389 3.708121 TCCATCTCTTAGCTGCTCATTCA 59.292 43.478 4.91 0.00 0.00 2.57
389 390 4.347292 TCCATCTCTTAGCTGCTCATTCAT 59.653 41.667 4.91 0.00 0.00 2.57
390 391 4.452795 CCATCTCTTAGCTGCTCATTCATG 59.547 45.833 4.91 4.72 0.00 3.07
391 392 4.750021 TCTCTTAGCTGCTCATTCATGT 57.250 40.909 4.91 0.00 0.00 3.21
392 393 4.439968 TCTCTTAGCTGCTCATTCATGTG 58.560 43.478 4.91 0.00 0.00 3.21
393 394 2.941064 TCTTAGCTGCTCATTCATGTGC 59.059 45.455 4.91 6.85 44.88 4.57
394 395 2.704464 TAGCTGCTCATTCATGTGCT 57.296 45.000 4.91 8.97 44.90 4.40
395 396 1.095600 AGCTGCTCATTCATGTGCTG 58.904 50.000 13.46 13.44 44.90 4.41
396 397 0.100682 GCTGCTCATTCATGTGCTGG 59.899 55.000 17.26 10.71 44.90 4.85
397 398 0.100682 CTGCTCATTCATGTGCTGGC 59.899 55.000 13.46 0.00 44.90 4.85
398 399 1.317431 TGCTCATTCATGTGCTGGCC 61.317 55.000 13.46 0.00 44.90 5.36
399 400 1.317431 GCTCATTCATGTGCTGGCCA 61.317 55.000 4.71 4.71 42.29 5.36
400 401 1.399714 CTCATTCATGTGCTGGCCAT 58.600 50.000 5.51 0.00 0.00 4.40
401 402 2.578786 CTCATTCATGTGCTGGCCATA 58.421 47.619 5.51 0.00 0.00 2.74
402 403 3.154710 CTCATTCATGTGCTGGCCATAT 58.845 45.455 5.51 0.00 0.00 1.78
403 404 4.329392 CTCATTCATGTGCTGGCCATATA 58.671 43.478 5.51 0.00 0.00 0.86
404 405 4.925836 TCATTCATGTGCTGGCCATATAT 58.074 39.130 5.51 0.00 0.00 0.86
405 406 6.064735 TCATTCATGTGCTGGCCATATATA 57.935 37.500 5.51 0.00 0.00 0.86
406 407 6.665695 TCATTCATGTGCTGGCCATATATAT 58.334 36.000 5.51 0.00 0.00 0.86
407 408 6.544564 TCATTCATGTGCTGGCCATATATATG 59.455 38.462 5.51 14.78 0.00 1.78
408 409 5.440207 TCATGTGCTGGCCATATATATGT 57.560 39.130 19.11 0.00 31.82 2.29
409 410 5.818887 TCATGTGCTGGCCATATATATGTT 58.181 37.500 19.11 0.00 31.82 2.71
410 411 5.648960 TCATGTGCTGGCCATATATATGTTG 59.351 40.000 19.11 7.99 31.82 3.33
411 412 4.984295 TGTGCTGGCCATATATATGTTGT 58.016 39.130 19.11 0.00 31.82 3.32
412 413 5.384336 TGTGCTGGCCATATATATGTTGTT 58.616 37.500 19.11 0.00 31.82 2.83
413 414 5.473162 TGTGCTGGCCATATATATGTTGTTC 59.527 40.000 19.11 7.85 31.82 3.18
414 415 5.473162 GTGCTGGCCATATATATGTTGTTCA 59.527 40.000 19.11 9.90 31.82 3.18
415 416 6.151648 GTGCTGGCCATATATATGTTGTTCAT 59.848 38.462 19.11 0.00 40.25 2.57
416 417 7.336679 GTGCTGGCCATATATATGTTGTTCATA 59.663 37.037 19.11 0.00 42.30 2.15
417 418 7.553760 TGCTGGCCATATATATGTTGTTCATAG 59.446 37.037 19.11 8.46 41.55 2.23
418 419 7.770433 GCTGGCCATATATATGTTGTTCATAGA 59.230 37.037 19.11 0.00 41.55 1.98
419 420 9.842775 CTGGCCATATATATGTTGTTCATAGAT 57.157 33.333 19.11 0.00 41.77 1.98
431 432 8.330466 TGTTGTTCATAGATATTTCGGTTTGT 57.670 30.769 0.00 0.00 0.00 2.83
432 433 9.438228 TGTTGTTCATAGATATTTCGGTTTGTA 57.562 29.630 0.00 0.00 0.00 2.41
433 434 9.698617 GTTGTTCATAGATATTTCGGTTTGTAC 57.301 33.333 0.00 0.00 0.00 2.90
434 435 9.438228 TTGTTCATAGATATTTCGGTTTGTACA 57.562 29.630 0.00 0.00 0.00 2.90
435 436 9.607988 TGTTCATAGATATTTCGGTTTGTACAT 57.392 29.630 0.00 0.00 0.00 2.29
436 437 9.864034 GTTCATAGATATTTCGGTTTGTACATG 57.136 33.333 0.00 0.00 0.00 3.21
437 438 8.083462 TCATAGATATTTCGGTTTGTACATGC 57.917 34.615 0.00 0.00 0.00 4.06
438 439 7.931407 TCATAGATATTTCGGTTTGTACATGCT 59.069 33.333 0.00 0.00 0.00 3.79
439 440 6.604735 AGATATTTCGGTTTGTACATGCTC 57.395 37.500 0.00 0.00 0.00 4.26
440 441 6.112734 AGATATTTCGGTTTGTACATGCTCA 58.887 36.000 0.00 0.00 0.00 4.26
441 442 3.889196 TTTCGGTTTGTACATGCTCAC 57.111 42.857 0.00 0.00 0.00 3.51
442 443 2.535012 TCGGTTTGTACATGCTCACA 57.465 45.000 0.00 0.00 0.00 3.58
443 444 3.052455 TCGGTTTGTACATGCTCACAT 57.948 42.857 0.00 0.00 36.79 3.21
451 452 3.170360 CATGCTCACATGCTCAGGT 57.830 52.632 0.00 0.00 46.75 4.00
452 453 2.320745 CATGCTCACATGCTCAGGTA 57.679 50.000 0.00 0.00 46.75 3.08
453 454 2.847441 CATGCTCACATGCTCAGGTAT 58.153 47.619 0.00 0.00 46.75 2.73
454 455 2.609427 TGCTCACATGCTCAGGTATC 57.391 50.000 0.00 0.00 0.00 2.24
455 456 1.202452 TGCTCACATGCTCAGGTATCG 60.202 52.381 0.00 0.00 0.00 2.92
456 457 1.871408 GCTCACATGCTCAGGTATCGG 60.871 57.143 0.00 0.00 0.00 4.18
457 458 1.410517 CTCACATGCTCAGGTATCGGT 59.589 52.381 0.00 0.00 0.00 4.69
458 459 2.623416 CTCACATGCTCAGGTATCGGTA 59.377 50.000 0.00 0.00 0.00 4.02
459 460 2.361119 TCACATGCTCAGGTATCGGTAC 59.639 50.000 0.00 0.00 0.00 3.34
483 484 4.593597 GGTGTATACCGTGTTTGTCATG 57.406 45.455 0.00 0.00 37.19 3.07
484 485 3.998341 GGTGTATACCGTGTTTGTCATGT 59.002 43.478 0.00 0.00 37.19 3.21
485 486 4.453136 GGTGTATACCGTGTTTGTCATGTT 59.547 41.667 0.00 0.00 37.19 2.71
486 487 5.049267 GGTGTATACCGTGTTTGTCATGTTT 60.049 40.000 0.00 0.00 37.19 2.83
487 488 6.147492 GGTGTATACCGTGTTTGTCATGTTTA 59.853 38.462 0.00 0.00 37.19 2.01
488 489 7.011189 GTGTATACCGTGTTTGTCATGTTTAC 58.989 38.462 0.00 0.00 0.00 2.01
489 490 6.930164 TGTATACCGTGTTTGTCATGTTTACT 59.070 34.615 0.00 0.00 0.00 2.24
490 491 4.545823 ACCGTGTTTGTCATGTTTACTG 57.454 40.909 0.00 0.00 0.00 2.74
491 492 3.942748 ACCGTGTTTGTCATGTTTACTGT 59.057 39.130 0.00 0.00 0.00 3.55
492 493 4.396790 ACCGTGTTTGTCATGTTTACTGTT 59.603 37.500 0.00 0.00 0.00 3.16
493 494 5.106078 ACCGTGTTTGTCATGTTTACTGTTT 60.106 36.000 0.00 0.00 0.00 2.83
494 495 5.802956 CCGTGTTTGTCATGTTTACTGTTTT 59.197 36.000 0.00 0.00 0.00 2.43
495 496 6.020995 CCGTGTTTGTCATGTTTACTGTTTTC 60.021 38.462 0.00 0.00 0.00 2.29
496 497 6.745450 CGTGTTTGTCATGTTTACTGTTTTCT 59.255 34.615 0.00 0.00 0.00 2.52
497 498 7.044966 CGTGTTTGTCATGTTTACTGTTTTCTC 60.045 37.037 0.00 0.00 0.00 2.87
498 499 6.964370 TGTTTGTCATGTTTACTGTTTTCTCG 59.036 34.615 0.00 0.00 0.00 4.04
499 500 6.671614 TTGTCATGTTTACTGTTTTCTCGT 57.328 33.333 0.00 0.00 0.00 4.18
500 501 6.043327 TGTCATGTTTACTGTTTTCTCGTG 57.957 37.500 0.00 0.00 0.00 4.35
501 502 5.007234 TGTCATGTTTACTGTTTTCTCGTGG 59.993 40.000 0.00 0.00 0.00 4.94
502 503 5.235616 GTCATGTTTACTGTTTTCTCGTGGA 59.764 40.000 0.00 0.00 0.00 4.02
503 504 5.995282 TCATGTTTACTGTTTTCTCGTGGAT 59.005 36.000 0.00 0.00 0.00 3.41
504 505 6.485313 TCATGTTTACTGTTTTCTCGTGGATT 59.515 34.615 0.00 0.00 0.00 3.01
505 506 7.658167 TCATGTTTACTGTTTTCTCGTGGATTA 59.342 33.333 0.00 0.00 0.00 1.75
506 507 7.416154 TGTTTACTGTTTTCTCGTGGATTAG 57.584 36.000 0.00 0.00 0.00 1.73
507 508 7.211573 TGTTTACTGTTTTCTCGTGGATTAGA 58.788 34.615 0.00 0.00 0.00 2.10
508 509 7.876068 TGTTTACTGTTTTCTCGTGGATTAGAT 59.124 33.333 0.00 0.00 0.00 1.98
509 510 8.718734 GTTTACTGTTTTCTCGTGGATTAGATT 58.281 33.333 0.00 0.00 0.00 2.40
510 511 9.932207 TTTACTGTTTTCTCGTGGATTAGATTA 57.068 29.630 0.00 0.00 0.00 1.75
511 512 9.582431 TTACTGTTTTCTCGTGGATTAGATTAG 57.418 33.333 0.00 0.00 0.00 1.73
512 513 7.612677 ACTGTTTTCTCGTGGATTAGATTAGT 58.387 34.615 0.00 0.00 0.00 2.24
513 514 8.095169 ACTGTTTTCTCGTGGATTAGATTAGTT 58.905 33.333 0.00 0.00 0.00 2.24
514 515 8.475331 TGTTTTCTCGTGGATTAGATTAGTTC 57.525 34.615 0.00 0.00 0.00 3.01
515 516 8.311836 TGTTTTCTCGTGGATTAGATTAGTTCT 58.688 33.333 0.00 0.00 38.57 3.01
516 517 9.798994 GTTTTCTCGTGGATTAGATTAGTTCTA 57.201 33.333 0.00 0.00 35.79 2.10
534 535 9.575868 TTAGTTCTAATATTCCCAACACAAACA 57.424 29.630 0.00 0.00 0.00 2.83
535 536 8.650143 AGTTCTAATATTCCCAACACAAACAT 57.350 30.769 0.00 0.00 0.00 2.71
536 537 9.747898 AGTTCTAATATTCCCAACACAAACATA 57.252 29.630 0.00 0.00 0.00 2.29
552 553 6.094881 CACAAACATATACGGTGGGAAAATCT 59.905 38.462 0.00 0.00 0.00 2.40
560 561 3.068560 CGGTGGGAAAATCTCGTTACAA 58.931 45.455 0.00 0.00 0.00 2.41
588 589 2.555199 CAATCAGCCTCCGGTCTAAAG 58.445 52.381 0.00 0.00 0.00 1.85
590 591 2.160721 TCAGCCTCCGGTCTAAAGAT 57.839 50.000 0.00 0.00 0.00 2.40
591 592 2.467880 TCAGCCTCCGGTCTAAAGATT 58.532 47.619 0.00 0.00 0.00 2.40
592 593 3.638860 TCAGCCTCCGGTCTAAAGATTA 58.361 45.455 0.00 0.00 0.00 1.75
593 594 3.637229 TCAGCCTCCGGTCTAAAGATTAG 59.363 47.826 0.00 0.00 0.00 1.73
599 601 6.127423 GCCTCCGGTCTAAAGATTAGCATATA 60.127 42.308 0.00 0.00 0.00 0.86
679 685 3.058160 GCGTGCCAAGTCCATGCT 61.058 61.111 0.00 0.00 40.98 3.79
841 874 2.441901 GGCCATTTCCCATGCCGA 60.442 61.111 0.00 0.00 33.59 5.54
893 934 2.531942 GTCCACCCCTCCCCAACT 60.532 66.667 0.00 0.00 0.00 3.16
897 938 1.435346 CCACCCCTCCCCAACTCTTT 61.435 60.000 0.00 0.00 0.00 2.52
958 1000 0.603707 CAACTCTGCTTCCTTCGCCA 60.604 55.000 0.00 0.00 0.00 5.69
980 1032 3.763057 TCTCTGCCGCTCTATATAACCA 58.237 45.455 0.00 0.00 0.00 3.67
989 1041 1.201647 TCTATATAACCAGCGAGCGCC 59.798 52.381 11.66 0.00 43.17 6.53
1010 1062 1.671850 CGCGCTTTCCTCCTGACTTTA 60.672 52.381 5.56 0.00 0.00 1.85
1015 1070 4.620803 CGCTTTCCTCCTGACTTTAGCTTA 60.621 45.833 0.00 0.00 0.00 3.09
1057 2231 1.266160 TTCCTCCCCCGCAAACGATA 61.266 55.000 0.00 0.00 43.93 2.92
1155 2333 1.301716 CCTGGTGTGCTACTGCGTT 60.302 57.895 0.00 0.00 43.34 4.84
1618 2806 2.579787 CGCCACTCGTTAGCTCGG 60.580 66.667 0.00 0.00 0.00 4.63
1699 2887 4.212425 CGACCGGCTGCATGTATATTTAAA 59.788 41.667 0.00 0.00 0.00 1.52
1700 2888 5.614668 CGACCGGCTGCATGTATATTTAAAG 60.615 44.000 0.00 0.00 0.00 1.85
1775 2974 5.593909 CCACTTTGTATAGCCATCCAATCAA 59.406 40.000 0.00 0.00 0.00 2.57
1835 3036 4.643784 TCGTAGAGAAGGATTAGTTGGTCC 59.356 45.833 0.00 0.00 34.64 4.46
1845 3046 6.485171 AGGATTAGTTGGTCCAATATATGCC 58.515 40.000 7.77 5.99 36.96 4.40
2062 3266 1.377202 AGTGGCCAATAGTGCGTGG 60.377 57.895 7.24 0.00 38.00 4.94
2065 3269 2.270850 GCCAATAGTGCGTGGGGA 59.729 61.111 0.00 0.00 35.28 4.81
2148 3374 9.965824 ATTGATTGATTTTTAGCCCTATTAACG 57.034 29.630 0.00 0.00 0.00 3.18
2149 3375 8.740123 TGATTGATTTTTAGCCCTATTAACGA 57.260 30.769 0.00 0.00 0.00 3.85
2150 3376 8.836413 TGATTGATTTTTAGCCCTATTAACGAG 58.164 33.333 0.00 0.00 0.00 4.18
2151 3377 8.747538 ATTGATTTTTAGCCCTATTAACGAGT 57.252 30.769 0.00 0.00 0.00 4.18
2152 3378 8.570068 TTGATTTTTAGCCCTATTAACGAGTT 57.430 30.769 0.00 0.00 0.00 3.01
2164 3453 9.379791 CCCTATTAACGAGTTATATCCATTTCC 57.620 37.037 0.00 0.00 0.00 3.13
2165 3454 9.379791 CCTATTAACGAGTTATATCCATTTCCC 57.620 37.037 0.00 0.00 0.00 3.97
2248 3544 6.238374 CGCGTAACCTCCAAATAATTCAATCT 60.238 38.462 0.00 0.00 0.00 2.40
2308 3605 9.362539 GACGAAATCACTTCCTTTAGTGTAATA 57.637 33.333 0.00 0.00 44.62 0.98
2350 3647 6.776116 AGTAGTTACTACTAGCACATATGCCA 59.224 38.462 21.95 0.00 44.80 4.92
2463 3762 0.461339 TAGATTCTGGGTTTCGCCGC 60.461 55.000 0.00 0.00 38.44 6.53
2509 3808 4.080356 ACTTTCCATTCATTGATCGAGGGA 60.080 41.667 0.00 0.00 0.00 4.20
2520 3819 2.441750 TGATCGAGGGAATTTAAGGGGG 59.558 50.000 0.00 0.00 0.00 5.40
2526 3825 4.620723 GAGGGAATTTAAGGGGGTTGATT 58.379 43.478 0.00 0.00 0.00 2.57
2670 3974 1.766496 TCTTGGGAACACCTTCTTCGT 59.234 47.619 0.00 0.00 42.67 3.85
2682 3986 7.171630 ACACCTTCTTCGTAGTATCAATCTT 57.828 36.000 0.00 0.00 0.00 2.40
2766 4070 1.300620 TCACTCTTTCACCCGCACG 60.301 57.895 0.00 0.00 0.00 5.34
2773 4077 1.801771 CTTTCACCCGCACGAACATTA 59.198 47.619 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.099831 CGTCGGGTGTAGCGACTC 59.900 66.667 0.00 0.00 0.00 3.36
3 4 3.437795 CCGTCGGGTGTAGCGACT 61.438 66.667 2.34 0.00 0.00 4.18
13 14 2.882761 TGAACTGATATAGACCGTCGGG 59.117 50.000 17.28 0.00 40.11 5.14
14 15 4.563337 TTGAACTGATATAGACCGTCGG 57.437 45.455 10.48 10.48 0.00 4.79
15 16 5.625721 GTGATTGAACTGATATAGACCGTCG 59.374 44.000 0.00 0.00 0.00 5.12
16 17 6.740110 AGTGATTGAACTGATATAGACCGTC 58.260 40.000 0.00 0.00 0.00 4.79
17 18 6.239064 GGAGTGATTGAACTGATATAGACCGT 60.239 42.308 0.00 0.00 0.00 4.83
18 19 6.153067 GGAGTGATTGAACTGATATAGACCG 58.847 44.000 0.00 0.00 0.00 4.79
19 20 6.268847 AGGGAGTGATTGAACTGATATAGACC 59.731 42.308 0.00 0.00 0.00 3.85
20 21 7.232534 AGAGGGAGTGATTGAACTGATATAGAC 59.767 40.741 0.00 0.00 0.00 2.59
21 22 7.301420 AGAGGGAGTGATTGAACTGATATAGA 58.699 38.462 0.00 0.00 0.00 1.98
22 23 7.537596 AGAGGGAGTGATTGAACTGATATAG 57.462 40.000 0.00 0.00 0.00 1.31
23 24 7.921041 AAGAGGGAGTGATTGAACTGATATA 57.079 36.000 0.00 0.00 0.00 0.86
24 25 6.821616 AAGAGGGAGTGATTGAACTGATAT 57.178 37.500 0.00 0.00 0.00 1.63
25 26 6.213397 TGAAAGAGGGAGTGATTGAACTGATA 59.787 38.462 0.00 0.00 0.00 2.15
26 27 5.013495 TGAAAGAGGGAGTGATTGAACTGAT 59.987 40.000 0.00 0.00 0.00 2.90
27 28 4.347876 TGAAAGAGGGAGTGATTGAACTGA 59.652 41.667 0.00 0.00 0.00 3.41
28 29 4.453819 GTGAAAGAGGGAGTGATTGAACTG 59.546 45.833 0.00 0.00 0.00 3.16
29 30 4.103153 TGTGAAAGAGGGAGTGATTGAACT 59.897 41.667 0.00 0.00 0.00 3.01
30 31 4.389374 TGTGAAAGAGGGAGTGATTGAAC 58.611 43.478 0.00 0.00 0.00 3.18
31 32 4.705110 TGTGAAAGAGGGAGTGATTGAA 57.295 40.909 0.00 0.00 0.00 2.69
32 33 4.103153 AGTTGTGAAAGAGGGAGTGATTGA 59.897 41.667 0.00 0.00 0.00 2.57
33 34 4.392940 AGTTGTGAAAGAGGGAGTGATTG 58.607 43.478 0.00 0.00 0.00 2.67
34 35 4.349342 AGAGTTGTGAAAGAGGGAGTGATT 59.651 41.667 0.00 0.00 0.00 2.57
35 36 3.906846 AGAGTTGTGAAAGAGGGAGTGAT 59.093 43.478 0.00 0.00 0.00 3.06
36 37 3.309296 AGAGTTGTGAAAGAGGGAGTGA 58.691 45.455 0.00 0.00 0.00 3.41
37 38 3.760580 AGAGTTGTGAAAGAGGGAGTG 57.239 47.619 0.00 0.00 0.00 3.51
38 39 3.259625 GCTAGAGTTGTGAAAGAGGGAGT 59.740 47.826 0.00 0.00 0.00 3.85
39 40 3.368948 GGCTAGAGTTGTGAAAGAGGGAG 60.369 52.174 0.00 0.00 0.00 4.30
40 41 2.567615 GGCTAGAGTTGTGAAAGAGGGA 59.432 50.000 0.00 0.00 0.00 4.20
41 42 2.303022 TGGCTAGAGTTGTGAAAGAGGG 59.697 50.000 0.00 0.00 0.00 4.30
42 43 3.685139 TGGCTAGAGTTGTGAAAGAGG 57.315 47.619 0.00 0.00 0.00 3.69
43 44 4.825422 TGATGGCTAGAGTTGTGAAAGAG 58.175 43.478 0.00 0.00 0.00 2.85
44 45 4.890158 TGATGGCTAGAGTTGTGAAAGA 57.110 40.909 0.00 0.00 0.00 2.52
45 46 5.426504 AGATGATGGCTAGAGTTGTGAAAG 58.573 41.667 0.00 0.00 0.00 2.62
46 47 5.426689 AGATGATGGCTAGAGTTGTGAAA 57.573 39.130 0.00 0.00 0.00 2.69
47 48 5.658634 AGTAGATGATGGCTAGAGTTGTGAA 59.341 40.000 0.00 0.00 0.00 3.18
48 49 5.068329 CAGTAGATGATGGCTAGAGTTGTGA 59.932 44.000 0.00 0.00 0.00 3.58
49 50 5.288015 CAGTAGATGATGGCTAGAGTTGTG 58.712 45.833 0.00 0.00 0.00 3.33
50 51 4.202202 GCAGTAGATGATGGCTAGAGTTGT 60.202 45.833 0.00 0.00 0.00 3.32
51 52 4.039004 AGCAGTAGATGATGGCTAGAGTTG 59.961 45.833 0.00 0.00 32.09 3.16
52 53 4.222336 AGCAGTAGATGATGGCTAGAGTT 58.778 43.478 0.00 0.00 32.09 3.01
53 54 3.843422 AGCAGTAGATGATGGCTAGAGT 58.157 45.455 0.00 0.00 32.09 3.24
54 55 4.870123 AAGCAGTAGATGATGGCTAGAG 57.130 45.455 0.00 0.00 33.80 2.43
55 56 4.039730 GGAAAGCAGTAGATGATGGCTAGA 59.960 45.833 0.00 0.00 33.80 2.43
56 57 4.314121 GGAAAGCAGTAGATGATGGCTAG 58.686 47.826 0.00 0.00 33.80 3.42
57 58 3.243873 CGGAAAGCAGTAGATGATGGCTA 60.244 47.826 0.00 0.00 33.80 3.93
58 59 2.484417 CGGAAAGCAGTAGATGATGGCT 60.484 50.000 0.00 0.00 36.13 4.75
59 60 1.869767 CGGAAAGCAGTAGATGATGGC 59.130 52.381 0.00 0.00 0.00 4.40
72 73 2.254464 GGATGGGATCGCGGAAAGC 61.254 63.158 6.13 0.00 43.95 3.51
73 74 1.598130 GGGATGGGATCGCGGAAAG 60.598 63.158 6.13 0.00 32.41 2.62
74 75 2.508928 GGGATGGGATCGCGGAAA 59.491 61.111 6.13 0.00 32.41 3.13
79 80 1.374758 GTCATCGGGATGGGATCGC 60.375 63.158 8.68 2.14 39.24 4.58
80 81 1.293498 GGTCATCGGGATGGGATCG 59.707 63.158 8.68 0.00 39.24 3.69
81 82 1.293498 CGGTCATCGGGATGGGATC 59.707 63.158 8.68 0.00 39.24 3.36
82 83 2.883828 GCGGTCATCGGGATGGGAT 61.884 63.158 8.68 0.00 39.24 3.85
83 84 3.546543 GCGGTCATCGGGATGGGA 61.547 66.667 8.68 0.00 39.24 4.37
90 91 2.279186 TATGCACGCGGTCATCGG 60.279 61.111 12.47 0.00 39.69 4.18
91 92 1.145759 AACTATGCACGCGGTCATCG 61.146 55.000 12.47 11.53 42.76 3.84
92 93 0.301687 CAACTATGCACGCGGTCATC 59.698 55.000 12.47 0.00 0.00 2.92
93 94 1.089481 CCAACTATGCACGCGGTCAT 61.089 55.000 12.47 15.46 0.00 3.06
94 95 1.739929 CCAACTATGCACGCGGTCA 60.740 57.895 12.47 8.20 0.00 4.02
95 96 1.693083 GACCAACTATGCACGCGGTC 61.693 60.000 12.47 1.21 36.46 4.79
96 97 1.740296 GACCAACTATGCACGCGGT 60.740 57.895 12.47 0.00 0.00 5.68
97 98 2.798501 CGACCAACTATGCACGCGG 61.799 63.158 12.47 0.00 0.00 6.46
98 99 1.742900 CTCGACCAACTATGCACGCG 61.743 60.000 3.53 3.53 0.00 6.01
99 100 0.457853 TCTCGACCAACTATGCACGC 60.458 55.000 0.00 0.00 0.00 5.34
100 101 1.132453 TCTCTCGACCAACTATGCACG 59.868 52.381 0.00 0.00 0.00 5.34
101 102 2.803451 CTCTCTCGACCAACTATGCAC 58.197 52.381 0.00 0.00 0.00 4.57
102 103 1.135139 GCTCTCTCGACCAACTATGCA 59.865 52.381 0.00 0.00 0.00 3.96
103 104 1.135139 TGCTCTCTCGACCAACTATGC 59.865 52.381 0.00 0.00 0.00 3.14
104 105 2.685388 TCTGCTCTCTCGACCAACTATG 59.315 50.000 0.00 0.00 0.00 2.23
105 106 3.006112 TCTGCTCTCTCGACCAACTAT 57.994 47.619 0.00 0.00 0.00 2.12
106 107 2.491675 TCTGCTCTCTCGACCAACTA 57.508 50.000 0.00 0.00 0.00 2.24
107 108 1.476085 CATCTGCTCTCTCGACCAACT 59.524 52.381 0.00 0.00 0.00 3.16
108 109 1.919918 CATCTGCTCTCTCGACCAAC 58.080 55.000 0.00 0.00 0.00 3.77
109 110 0.174389 GCATCTGCTCTCTCGACCAA 59.826 55.000 0.00 0.00 38.21 3.67
110 111 1.670949 GGCATCTGCTCTCTCGACCA 61.671 60.000 1.70 0.00 41.70 4.02
111 112 1.067250 GGCATCTGCTCTCTCGACC 59.933 63.158 1.70 0.00 41.70 4.79
112 113 0.030638 GAGGCATCTGCTCTCTCGAC 59.969 60.000 1.70 0.00 41.70 4.20
113 114 1.106351 GGAGGCATCTGCTCTCTCGA 61.106 60.000 15.52 0.00 41.70 4.04
114 115 1.363443 GGAGGCATCTGCTCTCTCG 59.637 63.158 15.52 0.00 41.70 4.04
115 116 1.363443 CGGAGGCATCTGCTCTCTC 59.637 63.158 15.52 8.65 41.70 3.20
116 117 2.132996 CCGGAGGCATCTGCTCTCT 61.133 63.158 0.46 1.21 46.14 3.10
117 118 2.420890 CCGGAGGCATCTGCTCTC 59.579 66.667 0.46 7.05 46.14 3.20
129 130 1.080025 GAACGACAGGGTTCCGGAG 60.080 63.158 3.34 0.00 40.28 4.63
130 131 2.922950 CGAACGACAGGGTTCCGGA 61.923 63.158 0.00 0.00 42.57 5.14
131 132 2.431942 CGAACGACAGGGTTCCGG 60.432 66.667 0.00 0.00 42.57 5.14
132 133 1.443872 CTCGAACGACAGGGTTCCG 60.444 63.158 0.00 0.00 42.57 4.30
133 134 0.531200 ATCTCGAACGACAGGGTTCC 59.469 55.000 0.00 0.00 42.57 3.62
134 135 3.712091 ATATCTCGAACGACAGGGTTC 57.288 47.619 0.00 0.00 42.21 3.62
135 136 3.782046 CAATATCTCGAACGACAGGGTT 58.218 45.455 0.00 0.00 0.00 4.11
136 137 2.481449 GCAATATCTCGAACGACAGGGT 60.481 50.000 0.00 0.00 0.00 4.34
137 138 2.128035 GCAATATCTCGAACGACAGGG 58.872 52.381 0.00 0.00 0.00 4.45
138 139 1.781429 CGCAATATCTCGAACGACAGG 59.219 52.381 0.00 0.00 0.00 4.00
139 140 1.188138 GCGCAATATCTCGAACGACAG 59.812 52.381 0.30 0.00 0.00 3.51
140 141 1.197055 GCGCAATATCTCGAACGACA 58.803 50.000 0.30 0.00 0.00 4.35
141 142 0.156857 CGCGCAATATCTCGAACGAC 59.843 55.000 8.75 0.00 0.00 4.34
142 143 0.933047 CCGCGCAATATCTCGAACGA 60.933 55.000 8.75 0.00 0.00 3.85
143 144 1.482955 CCGCGCAATATCTCGAACG 59.517 57.895 8.75 0.00 0.00 3.95
144 145 0.596600 TCCCGCGCAATATCTCGAAC 60.597 55.000 8.75 0.00 0.00 3.95
145 146 0.318699 CTCCCGCGCAATATCTCGAA 60.319 55.000 8.75 0.00 0.00 3.71
146 147 1.170290 TCTCCCGCGCAATATCTCGA 61.170 55.000 8.75 0.00 0.00 4.04
147 148 0.318699 TTCTCCCGCGCAATATCTCG 60.319 55.000 8.75 0.00 0.00 4.04
148 149 1.140816 GTTCTCCCGCGCAATATCTC 58.859 55.000 8.75 0.00 0.00 2.75
149 150 0.597637 CGTTCTCCCGCGCAATATCT 60.598 55.000 8.75 0.00 0.00 1.98
150 151 1.557443 CCGTTCTCCCGCGCAATATC 61.557 60.000 8.75 0.00 0.00 1.63
151 152 1.594293 CCGTTCTCCCGCGCAATAT 60.594 57.895 8.75 0.00 0.00 1.28
152 153 2.202824 CCGTTCTCCCGCGCAATA 60.203 61.111 8.75 0.00 0.00 1.90
157 158 1.762222 CTTATTGCCGTTCTCCCGCG 61.762 60.000 0.00 0.00 0.00 6.46
158 159 1.436983 CCTTATTGCCGTTCTCCCGC 61.437 60.000 0.00 0.00 0.00 6.13
159 160 0.107848 ACCTTATTGCCGTTCTCCCG 60.108 55.000 0.00 0.00 0.00 5.14
160 161 2.124277 AACCTTATTGCCGTTCTCCC 57.876 50.000 0.00 0.00 0.00 4.30
161 162 4.234574 CAAAAACCTTATTGCCGTTCTCC 58.765 43.478 0.00 0.00 0.00 3.71
162 163 4.234574 CCAAAAACCTTATTGCCGTTCTC 58.765 43.478 0.00 0.00 0.00 2.87
163 164 3.006430 CCCAAAAACCTTATTGCCGTTCT 59.994 43.478 0.00 0.00 0.00 3.01
164 165 3.322369 CCCAAAAACCTTATTGCCGTTC 58.678 45.455 0.00 0.00 0.00 3.95
165 166 2.037902 CCCCAAAAACCTTATTGCCGTT 59.962 45.455 0.00 0.00 0.00 4.44
166 167 1.621317 CCCCAAAAACCTTATTGCCGT 59.379 47.619 0.00 0.00 0.00 5.68
167 168 1.896465 TCCCCAAAAACCTTATTGCCG 59.104 47.619 0.00 0.00 0.00 5.69
168 169 2.354704 GCTCCCCAAAAACCTTATTGCC 60.355 50.000 0.00 0.00 0.00 4.52
169 170 2.354704 GGCTCCCCAAAAACCTTATTGC 60.355 50.000 0.00 0.00 0.00 3.56
170 171 3.173151 AGGCTCCCCAAAAACCTTATTG 58.827 45.455 0.00 0.00 0.00 1.90
171 172 3.077543 AGAGGCTCCCCAAAAACCTTATT 59.922 43.478 11.71 0.00 0.00 1.40
172 173 2.654896 AGAGGCTCCCCAAAAACCTTAT 59.345 45.455 11.71 0.00 0.00 1.73
173 174 2.041216 GAGAGGCTCCCCAAAAACCTTA 59.959 50.000 11.71 0.00 0.00 2.69
174 175 0.860457 AGAGGCTCCCCAAAAACCTT 59.140 50.000 11.71 0.00 0.00 3.50
175 176 0.405973 GAGAGGCTCCCCAAAAACCT 59.594 55.000 11.71 0.00 0.00 3.50
176 177 0.960861 CGAGAGGCTCCCCAAAAACC 60.961 60.000 11.71 0.00 0.00 3.27
177 178 0.036306 TCGAGAGGCTCCCCAAAAAC 59.964 55.000 11.71 0.00 0.00 2.43
178 179 0.036306 GTCGAGAGGCTCCCCAAAAA 59.964 55.000 11.71 0.00 0.00 1.94
179 180 1.677552 GTCGAGAGGCTCCCCAAAA 59.322 57.895 11.71 0.00 0.00 2.44
180 181 2.646175 CGTCGAGAGGCTCCCCAAA 61.646 63.158 11.71 0.00 0.00 3.28
181 182 3.068691 CGTCGAGAGGCTCCCCAA 61.069 66.667 11.71 0.00 0.00 4.12
185 186 4.539881 GTCGCGTCGAGAGGCTCC 62.540 72.222 11.71 1.69 39.80 4.70
186 187 3.501548 AGTCGCGTCGAGAGGCTC 61.502 66.667 6.34 6.34 39.80 4.70
187 188 3.805307 CAGTCGCGTCGAGAGGCT 61.805 66.667 5.77 0.00 39.80 4.58
189 190 3.726631 GAGCAGTCGCGTCGAGAGG 62.727 68.421 5.77 0.00 45.49 3.69
190 191 2.276994 GAGCAGTCGCGTCGAGAG 60.277 66.667 5.77 0.00 45.49 3.20
191 192 2.741726 GAGAGCAGTCGCGTCGAGA 61.742 63.158 5.77 0.00 45.49 4.04
192 193 2.276994 GAGAGCAGTCGCGTCGAG 60.277 66.667 5.77 0.00 45.49 4.04
193 194 4.148645 CGAGAGCAGTCGCGTCGA 62.149 66.667 5.77 0.00 46.42 4.20
194 195 3.441808 ATCGAGAGCAGTCGCGTCG 62.442 63.158 5.77 6.32 45.29 5.12
195 196 1.652930 GATCGAGAGCAGTCGCGTC 60.653 63.158 5.77 0.00 45.29 5.19
196 197 2.405594 GATCGAGAGCAGTCGCGT 59.594 61.111 5.77 0.00 45.29 6.01
197 198 2.352915 GGATCGAGAGCAGTCGCG 60.353 66.667 0.00 0.00 46.32 5.87
198 199 2.352915 CGGATCGAGAGCAGTCGC 60.353 66.667 3.00 0.00 39.90 5.19
199 200 1.010574 GACGGATCGAGAGCAGTCG 60.011 63.158 5.95 1.48 41.51 4.18
200 201 1.357334 GGACGGATCGAGAGCAGTC 59.643 63.158 11.98 11.98 40.32 3.51
201 202 2.122167 GGGACGGATCGAGAGCAGT 61.122 63.158 0.00 0.00 0.00 4.40
202 203 1.791103 GAGGGACGGATCGAGAGCAG 61.791 65.000 0.00 0.00 0.00 4.24
203 204 1.824329 GAGGGACGGATCGAGAGCA 60.824 63.158 0.00 0.00 0.00 4.26
204 205 1.512156 GAGAGGGACGGATCGAGAGC 61.512 65.000 0.00 0.00 0.00 4.09
205 206 0.107831 AGAGAGGGACGGATCGAGAG 59.892 60.000 0.00 0.00 0.00 3.20
206 207 1.070445 GTAGAGAGGGACGGATCGAGA 59.930 57.143 0.00 0.00 0.00 4.04
207 208 1.515081 GTAGAGAGGGACGGATCGAG 58.485 60.000 0.00 0.00 0.00 4.04
208 209 0.249784 CGTAGAGAGGGACGGATCGA 60.250 60.000 0.00 0.00 35.43 3.59
209 210 0.532417 ACGTAGAGAGGGACGGATCG 60.532 60.000 0.00 0.00 43.32 3.69
210 211 1.228533 GACGTAGAGAGGGACGGATC 58.771 60.000 0.00 0.00 43.32 3.36
211 212 0.179023 GGACGTAGAGAGGGACGGAT 60.179 60.000 0.00 0.00 43.32 4.18
212 213 1.222936 GGACGTAGAGAGGGACGGA 59.777 63.158 0.00 0.00 43.32 4.69
213 214 2.178890 CGGACGTAGAGAGGGACGG 61.179 68.421 0.00 0.00 43.32 4.79
214 215 1.427592 GACGGACGTAGAGAGGGACG 61.428 65.000 0.00 0.00 44.57 4.79
215 216 0.107752 AGACGGACGTAGAGAGGGAC 60.108 60.000 0.00 0.00 0.00 4.46
216 217 0.177604 GAGACGGACGTAGAGAGGGA 59.822 60.000 0.00 0.00 0.00 4.20
217 218 0.178533 AGAGACGGACGTAGAGAGGG 59.821 60.000 0.00 0.00 0.00 4.30
218 219 1.292061 CAGAGACGGACGTAGAGAGG 58.708 60.000 0.00 0.00 0.00 3.69
219 220 0.653636 GCAGAGACGGACGTAGAGAG 59.346 60.000 0.00 0.00 0.00 3.20
220 221 0.249676 AGCAGAGACGGACGTAGAGA 59.750 55.000 0.00 0.00 0.00 3.10
221 222 1.088306 AAGCAGAGACGGACGTAGAG 58.912 55.000 0.00 0.00 0.00 2.43
222 223 1.467734 GAAAGCAGAGACGGACGTAGA 59.532 52.381 0.00 0.00 0.00 2.59
223 224 1.199327 TGAAAGCAGAGACGGACGTAG 59.801 52.381 0.00 0.00 0.00 3.51
224 225 1.068748 GTGAAAGCAGAGACGGACGTA 60.069 52.381 0.00 0.00 0.00 3.57
225 226 0.318784 GTGAAAGCAGAGACGGACGT 60.319 55.000 0.00 0.00 0.00 4.34
226 227 0.039074 AGTGAAAGCAGAGACGGACG 60.039 55.000 0.00 0.00 0.00 4.79
227 228 2.062519 GAAGTGAAAGCAGAGACGGAC 58.937 52.381 0.00 0.00 0.00 4.79
228 229 1.964223 AGAAGTGAAAGCAGAGACGGA 59.036 47.619 0.00 0.00 0.00 4.69
229 230 2.447244 AGAAGTGAAAGCAGAGACGG 57.553 50.000 0.00 0.00 0.00 4.79
230 231 2.734079 GGAAGAAGTGAAAGCAGAGACG 59.266 50.000 0.00 0.00 0.00 4.18
231 232 3.993736 GAGGAAGAAGTGAAAGCAGAGAC 59.006 47.826 0.00 0.00 0.00 3.36
232 233 3.007398 GGAGGAAGAAGTGAAAGCAGAGA 59.993 47.826 0.00 0.00 0.00 3.10
233 234 3.333804 GGAGGAAGAAGTGAAAGCAGAG 58.666 50.000 0.00 0.00 0.00 3.35
234 235 2.289072 CGGAGGAAGAAGTGAAAGCAGA 60.289 50.000 0.00 0.00 0.00 4.26
235 236 2.072298 CGGAGGAAGAAGTGAAAGCAG 58.928 52.381 0.00 0.00 0.00 4.24
236 237 1.878102 GCGGAGGAAGAAGTGAAAGCA 60.878 52.381 0.00 0.00 0.00 3.91
237 238 0.799393 GCGGAGGAAGAAGTGAAAGC 59.201 55.000 0.00 0.00 0.00 3.51
238 239 1.071605 CGCGGAGGAAGAAGTGAAAG 58.928 55.000 0.00 0.00 0.00 2.62
239 240 0.391597 ACGCGGAGGAAGAAGTGAAA 59.608 50.000 12.47 0.00 0.00 2.69
240 241 0.038526 GACGCGGAGGAAGAAGTGAA 60.039 55.000 12.47 0.00 0.00 3.18
241 242 1.585006 GACGCGGAGGAAGAAGTGA 59.415 57.895 12.47 0.00 0.00 3.41
242 243 1.801913 CGACGCGGAGGAAGAAGTG 60.802 63.158 12.47 0.00 0.00 3.16
243 244 1.970114 TCGACGCGGAGGAAGAAGT 60.970 57.895 12.47 0.00 0.00 3.01
244 245 1.514443 GTCGACGCGGAGGAAGAAG 60.514 63.158 12.47 0.00 0.00 2.85
245 246 1.521450 AAGTCGACGCGGAGGAAGAA 61.521 55.000 12.47 0.00 0.00 2.52
246 247 1.970114 AAGTCGACGCGGAGGAAGA 60.970 57.895 12.47 0.00 0.00 2.87
247 248 1.801913 CAAGTCGACGCGGAGGAAG 60.802 63.158 12.47 0.00 0.00 3.46
248 249 2.257371 CAAGTCGACGCGGAGGAA 59.743 61.111 12.47 0.00 0.00 3.36
249 250 3.744719 CCAAGTCGACGCGGAGGA 61.745 66.667 18.37 0.64 0.00 3.71
251 252 4.421479 AGCCAAGTCGACGCGGAG 62.421 66.667 25.03 3.43 0.00 4.63
252 253 4.717629 CAGCCAAGTCGACGCGGA 62.718 66.667 25.03 0.00 0.00 5.54
253 254 4.717629 TCAGCCAAGTCGACGCGG 62.718 66.667 18.74 18.74 0.00 6.46
254 255 3.470567 GTCAGCCAAGTCGACGCG 61.471 66.667 10.46 3.53 0.00 6.01
255 256 1.954146 TTGTCAGCCAAGTCGACGC 60.954 57.895 10.46 7.91 32.17 5.19
256 257 1.853319 GTTGTCAGCCAAGTCGACG 59.147 57.895 10.46 0.00 32.51 5.12
257 258 0.596600 TCGTTGTCAGCCAAGTCGAC 60.597 55.000 7.70 7.70 32.51 4.20
258 259 0.103390 TTCGTTGTCAGCCAAGTCGA 59.897 50.000 0.00 0.00 32.51 4.20
259 260 0.508641 CTTCGTTGTCAGCCAAGTCG 59.491 55.000 0.00 0.00 32.51 4.18
260 261 0.235926 GCTTCGTTGTCAGCCAAGTC 59.764 55.000 0.00 0.00 32.51 3.01
261 262 2.321213 GCTTCGTTGTCAGCCAAGT 58.679 52.632 0.00 0.00 32.51 3.16
266 267 4.090057 GGCGGCTTCGTTGTCAGC 62.090 66.667 0.00 0.00 36.07 4.26
267 268 2.175184 CTTGGCGGCTTCGTTGTCAG 62.175 60.000 11.43 0.00 36.07 3.51
268 269 2.203084 TTGGCGGCTTCGTTGTCA 60.203 55.556 11.43 0.00 36.07 3.58
269 270 1.503818 TTCTTGGCGGCTTCGTTGTC 61.504 55.000 11.43 0.00 36.07 3.18
270 271 1.507141 CTTCTTGGCGGCTTCGTTGT 61.507 55.000 11.43 0.00 36.07 3.32
271 272 1.207593 CTTCTTGGCGGCTTCGTTG 59.792 57.895 11.43 0.00 36.07 4.10
272 273 0.534203 TTCTTCTTGGCGGCTTCGTT 60.534 50.000 11.43 0.00 36.07 3.85
273 274 0.951040 CTTCTTCTTGGCGGCTTCGT 60.951 55.000 11.43 0.00 36.07 3.85
274 275 1.639298 CCTTCTTCTTGGCGGCTTCG 61.639 60.000 11.43 0.00 0.00 3.79
275 276 1.927608 GCCTTCTTCTTGGCGGCTTC 61.928 60.000 11.43 0.00 39.71 3.86
276 277 1.973812 GCCTTCTTCTTGGCGGCTT 60.974 57.895 11.43 0.00 39.71 4.35
277 278 2.360475 GCCTTCTTCTTGGCGGCT 60.360 61.111 11.43 0.00 39.71 5.52
282 283 1.746991 GCCGAGGCCTTCTTCTTGG 60.747 63.158 6.77 0.00 37.56 3.61
283 284 3.896479 GCCGAGGCCTTCTTCTTG 58.104 61.111 6.77 0.00 34.56 3.02
340 341 1.418908 ATATCCTCCGGTTGGCCAGG 61.419 60.000 5.11 3.91 34.14 4.45
341 342 0.250467 CATATCCTCCGGTTGGCCAG 60.250 60.000 5.11 0.00 34.14 4.85
342 343 0.692756 TCATATCCTCCGGTTGGCCA 60.693 55.000 0.00 0.00 34.14 5.36
343 344 0.250338 GTCATATCCTCCGGTTGGCC 60.250 60.000 0.00 0.00 34.14 5.36
344 345 0.759346 AGTCATATCCTCCGGTTGGC 59.241 55.000 0.00 0.00 34.14 4.52
345 346 1.000163 CGAGTCATATCCTCCGGTTGG 60.000 57.143 0.00 5.54 0.00 3.77
346 347 1.681793 ACGAGTCATATCCTCCGGTTG 59.318 52.381 0.00 0.00 0.00 3.77
347 348 1.955080 GACGAGTCATATCCTCCGGTT 59.045 52.381 0.00 0.00 0.00 4.44
348 349 1.606903 GACGAGTCATATCCTCCGGT 58.393 55.000 0.00 0.00 0.00 5.28
349 350 0.882474 GGACGAGTCATATCCTCCGG 59.118 60.000 0.00 0.00 0.00 5.14
350 351 1.605753 TGGACGAGTCATATCCTCCG 58.394 55.000 5.55 0.00 33.34 4.63
351 352 3.426615 AGATGGACGAGTCATATCCTCC 58.573 50.000 5.55 0.00 33.34 4.30
352 353 4.331968 AGAGATGGACGAGTCATATCCTC 58.668 47.826 5.55 7.77 34.46 3.71
353 354 4.380843 AGAGATGGACGAGTCATATCCT 57.619 45.455 5.55 5.62 34.46 3.24
354 355 5.392595 GCTAAGAGATGGACGAGTCATATCC 60.393 48.000 5.55 0.00 34.46 2.59
355 356 5.414454 AGCTAAGAGATGGACGAGTCATATC 59.586 44.000 5.55 8.22 34.22 1.63
356 357 5.182950 CAGCTAAGAGATGGACGAGTCATAT 59.817 44.000 5.55 0.00 0.00 1.78
357 358 4.517075 CAGCTAAGAGATGGACGAGTCATA 59.483 45.833 5.55 0.00 0.00 2.15
358 359 3.317711 CAGCTAAGAGATGGACGAGTCAT 59.682 47.826 5.55 0.00 0.00 3.06
359 360 2.685388 CAGCTAAGAGATGGACGAGTCA 59.315 50.000 5.55 0.00 0.00 3.41
360 361 2.542824 GCAGCTAAGAGATGGACGAGTC 60.543 54.545 0.00 0.00 31.11 3.36
361 362 1.407258 GCAGCTAAGAGATGGACGAGT 59.593 52.381 0.00 0.00 31.11 4.18
362 363 1.680735 AGCAGCTAAGAGATGGACGAG 59.319 52.381 0.00 0.00 31.11 4.18
363 364 1.678627 GAGCAGCTAAGAGATGGACGA 59.321 52.381 0.00 0.00 31.11 4.20
364 365 1.406898 TGAGCAGCTAAGAGATGGACG 59.593 52.381 0.00 0.00 31.11 4.79
365 366 3.749665 ATGAGCAGCTAAGAGATGGAC 57.250 47.619 0.00 0.00 31.11 4.02
366 367 3.708121 TGAATGAGCAGCTAAGAGATGGA 59.292 43.478 0.00 0.00 31.11 3.41
367 368 4.069300 TGAATGAGCAGCTAAGAGATGG 57.931 45.455 0.00 0.00 31.11 3.51
368 369 5.050023 CACATGAATGAGCAGCTAAGAGATG 60.050 44.000 0.00 0.00 34.14 2.90
369 370 5.057819 CACATGAATGAGCAGCTAAGAGAT 58.942 41.667 0.00 0.00 0.00 2.75
370 371 4.439968 CACATGAATGAGCAGCTAAGAGA 58.560 43.478 0.00 0.00 0.00 3.10
371 372 3.002451 GCACATGAATGAGCAGCTAAGAG 59.998 47.826 0.00 0.00 42.71 2.85
372 373 2.941064 GCACATGAATGAGCAGCTAAGA 59.059 45.455 0.00 0.00 42.71 2.10
373 374 2.943690 AGCACATGAATGAGCAGCTAAG 59.056 45.455 13.90 0.00 45.06 2.18
374 375 2.681344 CAGCACATGAATGAGCAGCTAA 59.319 45.455 13.90 0.00 45.06 3.09
375 376 2.285977 CAGCACATGAATGAGCAGCTA 58.714 47.619 13.90 0.00 45.06 3.32
376 377 1.095600 CAGCACATGAATGAGCAGCT 58.904 50.000 13.90 0.00 45.06 4.24
377 378 0.100682 CCAGCACATGAATGAGCAGC 59.899 55.000 13.90 5.04 45.06 5.25
378 379 0.100682 GCCAGCACATGAATGAGCAG 59.899 55.000 13.90 6.77 45.06 4.24
379 380 1.317431 GGCCAGCACATGAATGAGCA 61.317 55.000 13.90 0.00 45.06 4.26
380 381 1.317431 TGGCCAGCACATGAATGAGC 61.317 55.000 0.00 4.74 43.36 4.26
381 382 1.399714 ATGGCCAGCACATGAATGAG 58.600 50.000 13.05 0.00 0.00 2.90
382 383 2.732844 TATGGCCAGCACATGAATGA 57.267 45.000 13.05 0.00 0.00 2.57
383 384 6.320418 ACATATATATGGCCAGCACATGAATG 59.680 38.462 23.44 9.70 38.00 2.67
384 385 6.429151 ACATATATATGGCCAGCACATGAAT 58.571 36.000 23.44 0.00 38.00 2.57
385 386 5.818887 ACATATATATGGCCAGCACATGAA 58.181 37.500 23.44 0.00 38.00 2.57
386 387 5.440207 ACATATATATGGCCAGCACATGA 57.560 39.130 23.44 0.00 38.00 3.07
387 388 5.416639 ACAACATATATATGGCCAGCACATG 59.583 40.000 23.44 12.96 38.00 3.21
388 389 5.573219 ACAACATATATATGGCCAGCACAT 58.427 37.500 23.44 4.32 38.00 3.21
389 390 4.984295 ACAACATATATATGGCCAGCACA 58.016 39.130 23.44 0.00 38.00 4.57
390 391 5.473162 TGAACAACATATATATGGCCAGCAC 59.527 40.000 23.44 10.89 38.00 4.40
391 392 5.629125 TGAACAACATATATATGGCCAGCA 58.371 37.500 23.44 14.00 38.00 4.41
392 393 6.764308 ATGAACAACATATATATGGCCAGC 57.236 37.500 23.44 12.02 37.46 4.85
393 394 9.842775 ATCTATGAACAACATATATATGGCCAG 57.157 33.333 23.44 13.51 40.18 4.85
405 406 8.956426 ACAAACCGAAATATCTATGAACAACAT 58.044 29.630 0.00 0.00 42.39 2.71
406 407 8.330466 ACAAACCGAAATATCTATGAACAACA 57.670 30.769 0.00 0.00 0.00 3.33
407 408 9.698617 GTACAAACCGAAATATCTATGAACAAC 57.301 33.333 0.00 0.00 0.00 3.32
408 409 9.438228 TGTACAAACCGAAATATCTATGAACAA 57.562 29.630 0.00 0.00 0.00 2.83
409 410 9.607988 ATGTACAAACCGAAATATCTATGAACA 57.392 29.630 0.00 0.00 0.00 3.18
410 411 9.864034 CATGTACAAACCGAAATATCTATGAAC 57.136 33.333 0.00 0.00 0.00 3.18
411 412 8.556194 GCATGTACAAACCGAAATATCTATGAA 58.444 33.333 0.00 0.00 0.00 2.57
412 413 7.931407 AGCATGTACAAACCGAAATATCTATGA 59.069 33.333 0.00 0.00 0.00 2.15
413 414 8.087982 AGCATGTACAAACCGAAATATCTATG 57.912 34.615 0.00 0.00 0.00 2.23
414 415 7.931407 TGAGCATGTACAAACCGAAATATCTAT 59.069 33.333 0.00 0.00 0.00 1.98
415 416 7.223971 GTGAGCATGTACAAACCGAAATATCTA 59.776 37.037 0.00 0.00 0.00 1.98
416 417 6.037172 GTGAGCATGTACAAACCGAAATATCT 59.963 38.462 0.00 0.00 0.00 1.98
417 418 6.183360 TGTGAGCATGTACAAACCGAAATATC 60.183 38.462 0.00 0.00 0.00 1.63
418 419 5.645929 TGTGAGCATGTACAAACCGAAATAT 59.354 36.000 0.00 0.00 0.00 1.28
419 420 4.998033 TGTGAGCATGTACAAACCGAAATA 59.002 37.500 0.00 0.00 0.00 1.40
420 421 3.818210 TGTGAGCATGTACAAACCGAAAT 59.182 39.130 0.00 0.00 0.00 2.17
421 422 3.206964 TGTGAGCATGTACAAACCGAAA 58.793 40.909 0.00 0.00 0.00 3.46
422 423 2.839975 TGTGAGCATGTACAAACCGAA 58.160 42.857 0.00 0.00 0.00 4.30
423 424 2.535012 TGTGAGCATGTACAAACCGA 57.465 45.000 0.00 0.00 0.00 4.69
424 425 3.121559 CATGTGAGCATGTACAAACCG 57.878 47.619 0.00 0.00 45.48 4.44
434 435 2.547430 CGATACCTGAGCATGTGAGCAT 60.547 50.000 0.00 0.00 36.85 3.79
435 436 1.202452 CGATACCTGAGCATGTGAGCA 60.202 52.381 0.00 0.00 36.85 4.26
436 437 1.495878 CGATACCTGAGCATGTGAGC 58.504 55.000 0.00 0.00 0.00 4.26
437 438 1.410517 ACCGATACCTGAGCATGTGAG 59.589 52.381 0.00 0.00 0.00 3.51
438 439 1.485124 ACCGATACCTGAGCATGTGA 58.515 50.000 0.00 0.00 0.00 3.58
439 440 2.743938 GTACCGATACCTGAGCATGTG 58.256 52.381 0.00 0.00 0.00 3.21
440 441 1.337071 CGTACCGATACCTGAGCATGT 59.663 52.381 0.00 0.00 0.00 3.21
441 442 1.607148 TCGTACCGATACCTGAGCATG 59.393 52.381 0.00 0.00 0.00 4.06
442 443 1.880675 CTCGTACCGATACCTGAGCAT 59.119 52.381 0.00 0.00 34.61 3.79
443 444 1.306148 CTCGTACCGATACCTGAGCA 58.694 55.000 0.00 0.00 34.61 4.26
444 445 0.592148 CCTCGTACCGATACCTGAGC 59.408 60.000 0.00 0.00 34.61 4.26
445 446 1.602851 CACCTCGTACCGATACCTGAG 59.397 57.143 0.00 0.00 34.61 3.35
446 447 1.065199 ACACCTCGTACCGATACCTGA 60.065 52.381 0.00 0.00 34.61 3.86
447 448 1.386533 ACACCTCGTACCGATACCTG 58.613 55.000 0.00 0.00 34.61 4.00
448 449 3.498774 ATACACCTCGTACCGATACCT 57.501 47.619 0.00 0.00 34.61 3.08
449 450 3.437049 GGTATACACCTCGTACCGATACC 59.563 52.174 5.01 0.00 42.11 2.73
450 451 4.670227 GGTATACACCTCGTACCGATAC 57.330 50.000 5.01 0.00 42.11 2.24
455 456 2.017049 ACACGGTATACACCTCGTACC 58.983 52.381 5.01 0.00 43.33 3.34
456 457 3.764885 AACACGGTATACACCTCGTAC 57.235 47.619 5.01 0.00 43.33 3.67
457 458 3.505680 ACAAACACGGTATACACCTCGTA 59.494 43.478 5.01 0.00 43.33 3.43
458 459 2.297033 ACAAACACGGTATACACCTCGT 59.703 45.455 5.01 2.13 43.33 4.18
459 460 2.919229 GACAAACACGGTATACACCTCG 59.081 50.000 5.01 1.46 43.33 4.63
460 461 3.916761 TGACAAACACGGTATACACCTC 58.083 45.455 5.01 0.00 43.33 3.85
461 462 4.250464 CATGACAAACACGGTATACACCT 58.750 43.478 5.01 0.00 43.33 4.00
462 463 3.998341 ACATGACAAACACGGTATACACC 59.002 43.478 5.01 0.00 41.93 4.16
463 464 5.600908 AACATGACAAACACGGTATACAC 57.399 39.130 5.01 0.00 0.00 2.90
464 465 6.930164 AGTAAACATGACAAACACGGTATACA 59.070 34.615 5.01 0.00 0.00 2.29
465 466 7.095523 ACAGTAAACATGACAAACACGGTATAC 60.096 37.037 0.00 0.00 0.00 1.47
466 467 6.930164 ACAGTAAACATGACAAACACGGTATA 59.070 34.615 0.00 0.00 0.00 1.47
467 468 5.761234 ACAGTAAACATGACAAACACGGTAT 59.239 36.000 0.00 0.00 0.00 2.73
468 469 5.117584 ACAGTAAACATGACAAACACGGTA 58.882 37.500 0.00 0.00 0.00 4.02
469 470 3.942748 ACAGTAAACATGACAAACACGGT 59.057 39.130 0.00 0.00 0.00 4.83
470 471 4.545823 ACAGTAAACATGACAAACACGG 57.454 40.909 0.00 0.00 0.00 4.94
471 472 6.745450 AGAAAACAGTAAACATGACAAACACG 59.255 34.615 0.00 0.00 0.00 4.49
472 473 7.044966 CGAGAAAACAGTAAACATGACAAACAC 60.045 37.037 0.00 0.00 0.00 3.32
473 474 6.964370 CGAGAAAACAGTAAACATGACAAACA 59.036 34.615 0.00 0.00 0.00 2.83
474 475 6.964934 ACGAGAAAACAGTAAACATGACAAAC 59.035 34.615 0.00 0.00 0.00 2.93
475 476 6.964370 CACGAGAAAACAGTAAACATGACAAA 59.036 34.615 0.00 0.00 0.00 2.83
476 477 6.457663 CCACGAGAAAACAGTAAACATGACAA 60.458 38.462 0.00 0.00 0.00 3.18
477 478 5.007234 CCACGAGAAAACAGTAAACATGACA 59.993 40.000 0.00 0.00 0.00 3.58
478 479 5.235616 TCCACGAGAAAACAGTAAACATGAC 59.764 40.000 0.00 0.00 0.00 3.06
479 480 5.361427 TCCACGAGAAAACAGTAAACATGA 58.639 37.500 0.00 0.00 0.00 3.07
480 481 5.666969 TCCACGAGAAAACAGTAAACATG 57.333 39.130 0.00 0.00 0.00 3.21
481 482 6.877611 AATCCACGAGAAAACAGTAAACAT 57.122 33.333 0.00 0.00 0.00 2.71
482 483 7.211573 TCTAATCCACGAGAAAACAGTAAACA 58.788 34.615 0.00 0.00 0.00 2.83
483 484 7.647907 TCTAATCCACGAGAAAACAGTAAAC 57.352 36.000 0.00 0.00 0.00 2.01
484 485 8.842358 AATCTAATCCACGAGAAAACAGTAAA 57.158 30.769 0.00 0.00 0.00 2.01
485 486 9.582431 CTAATCTAATCCACGAGAAAACAGTAA 57.418 33.333 0.00 0.00 0.00 2.24
486 487 8.746530 ACTAATCTAATCCACGAGAAAACAGTA 58.253 33.333 0.00 0.00 0.00 2.74
487 488 7.612677 ACTAATCTAATCCACGAGAAAACAGT 58.387 34.615 0.00 0.00 0.00 3.55
488 489 8.480643 AACTAATCTAATCCACGAGAAAACAG 57.519 34.615 0.00 0.00 0.00 3.16
489 490 8.311836 AGAACTAATCTAATCCACGAGAAAACA 58.688 33.333 0.00 0.00 36.32 2.83
490 491 8.705048 AGAACTAATCTAATCCACGAGAAAAC 57.295 34.615 0.00 0.00 36.32 2.43
508 509 9.575868 TGTTTGTGTTGGGAATATTAGAACTAA 57.424 29.630 0.00 0.00 0.00 2.24
509 510 9.747898 ATGTTTGTGTTGGGAATATTAGAACTA 57.252 29.630 0.00 0.00 0.00 2.24
510 511 8.650143 ATGTTTGTGTTGGGAATATTAGAACT 57.350 30.769 0.00 0.00 0.00 3.01
515 516 9.058174 CCGTATATGTTTGTGTTGGGAATATTA 57.942 33.333 0.00 0.00 0.00 0.98
516 517 7.558444 ACCGTATATGTTTGTGTTGGGAATATT 59.442 33.333 0.00 0.00 0.00 1.28
517 518 7.012894 CACCGTATATGTTTGTGTTGGGAATAT 59.987 37.037 0.00 0.00 0.00 1.28
518 519 6.316640 CACCGTATATGTTTGTGTTGGGAATA 59.683 38.462 0.00 0.00 0.00 1.75
519 520 5.124776 CACCGTATATGTTTGTGTTGGGAAT 59.875 40.000 0.00 0.00 0.00 3.01
520 521 4.456222 CACCGTATATGTTTGTGTTGGGAA 59.544 41.667 0.00 0.00 0.00 3.97
521 522 4.004314 CACCGTATATGTTTGTGTTGGGA 58.996 43.478 0.00 0.00 0.00 4.37
522 523 3.127895 CCACCGTATATGTTTGTGTTGGG 59.872 47.826 0.00 0.00 0.00 4.12
523 524 3.127895 CCCACCGTATATGTTTGTGTTGG 59.872 47.826 0.00 0.00 0.00 3.77
524 525 4.004314 TCCCACCGTATATGTTTGTGTTG 58.996 43.478 0.00 0.00 0.00 3.33
525 526 4.289238 TCCCACCGTATATGTTTGTGTT 57.711 40.909 0.00 0.00 0.00 3.32
526 527 3.985019 TCCCACCGTATATGTTTGTGT 57.015 42.857 0.00 0.00 0.00 3.72
527 528 5.630661 TTTTCCCACCGTATATGTTTGTG 57.369 39.130 0.00 0.00 0.00 3.33
528 529 6.184789 AGATTTTCCCACCGTATATGTTTGT 58.815 36.000 0.00 0.00 0.00 2.83
529 530 6.511121 CGAGATTTTCCCACCGTATATGTTTG 60.511 42.308 0.00 0.00 0.00 2.93
530 531 5.526111 CGAGATTTTCCCACCGTATATGTTT 59.474 40.000 0.00 0.00 0.00 2.83
531 532 5.054477 CGAGATTTTCCCACCGTATATGTT 58.946 41.667 0.00 0.00 0.00 2.71
532 533 4.100498 ACGAGATTTTCCCACCGTATATGT 59.900 41.667 0.00 0.00 0.00 2.29
533 534 4.628074 ACGAGATTTTCCCACCGTATATG 58.372 43.478 0.00 0.00 0.00 1.78
534 535 4.950205 ACGAGATTTTCCCACCGTATAT 57.050 40.909 0.00 0.00 0.00 0.86
535 536 4.741321 AACGAGATTTTCCCACCGTATA 57.259 40.909 0.00 0.00 0.00 1.47
536 537 3.622166 AACGAGATTTTCCCACCGTAT 57.378 42.857 0.00 0.00 0.00 3.06
537 538 3.257873 TGTAACGAGATTTTCCCACCGTA 59.742 43.478 0.00 0.00 0.00 4.02
538 539 2.037511 TGTAACGAGATTTTCCCACCGT 59.962 45.455 0.00 0.00 0.00 4.83
539 540 2.690786 TGTAACGAGATTTTCCCACCG 58.309 47.619 0.00 0.00 0.00 4.94
540 541 3.119955 GCTTGTAACGAGATTTTCCCACC 60.120 47.826 0.00 0.00 0.00 4.61
552 553 0.604243 ATTGGTGCCGCTTGTAACGA 60.604 50.000 0.00 0.00 0.00 3.85
621 623 4.803908 GCGAGGGGGAAAGCCTGG 62.804 72.222 0.00 0.00 0.00 4.45
679 685 1.837439 CCATCCTTGGGTAGTGCACTA 59.163 52.381 22.67 22.67 39.56 2.74
841 874 2.436292 AGCTCGCCGTACGTCTCT 60.436 61.111 15.21 0.96 44.19 3.10
893 934 0.179129 GATAACGCGGACCGGAAAGA 60.179 55.000 17.22 0.00 42.52 2.52
897 938 2.440796 AGGATAACGCGGACCGGA 60.441 61.111 17.22 0.00 42.52 5.14
958 1000 4.344978 TGGTTATATAGAGCGGCAGAGAT 58.655 43.478 1.45 0.00 0.00 2.75
989 1041 2.788191 AAGTCAGGAGGAAAGCGCGG 62.788 60.000 8.83 0.00 0.00 6.46
1010 1062 9.989296 AGAGGATATATGTACTTGATCTAAGCT 57.011 33.333 0.00 0.00 40.16 3.74
1015 1070 9.030452 GGAACAGAGGATATATGTACTTGATCT 57.970 37.037 0.00 0.00 30.22 2.75
1029 2203 0.105658 CGGGGGAGGAACAGAGGATA 60.106 60.000 0.00 0.00 0.00 2.59
1038 2212 1.266160 TATCGTTTGCGGGGGAGGAA 61.266 55.000 0.00 0.00 38.89 3.36
1213 2391 1.992277 GGGAGAGCAGCAGGAGGAA 60.992 63.158 0.00 0.00 0.00 3.36
1341 2519 3.884774 TCGTGGCACCCCTGCTTT 61.885 61.111 12.86 0.00 43.66 3.51
1342 2520 4.643387 GTCGTGGCACCCCTGCTT 62.643 66.667 12.86 0.00 43.66 3.91
1699 2887 4.020573 TGAGACGATGTAAACCCACAATCT 60.021 41.667 0.00 0.00 30.84 2.40
1700 2888 4.250464 TGAGACGATGTAAACCCACAATC 58.750 43.478 0.00 0.00 30.84 2.67
1835 3036 4.261155 CCAAACACGACCAGGCATATATTG 60.261 45.833 0.00 0.00 0.00 1.90
1845 3046 1.148310 CACTAGCCAAACACGACCAG 58.852 55.000 0.00 0.00 0.00 4.00
2062 3266 2.289444 TGTTCGTGTCCAGAATCTTCCC 60.289 50.000 0.00 0.00 0.00 3.97
2065 3269 3.748048 CACATGTTCGTGTCCAGAATCTT 59.252 43.478 0.00 0.00 32.00 2.40
2144 3370 6.328148 ACAGGGGAAATGGATATAACTCGTTA 59.672 38.462 0.00 0.00 0.00 3.18
2148 3374 7.290813 AGAAACAGGGGAAATGGATATAACTC 58.709 38.462 0.00 0.00 0.00 3.01
2149 3375 7.129504 AGAGAAACAGGGGAAATGGATATAACT 59.870 37.037 0.00 0.00 0.00 2.24
2150 3376 7.229506 CAGAGAAACAGGGGAAATGGATATAAC 59.770 40.741 0.00 0.00 0.00 1.89
2151 3377 7.290061 CAGAGAAACAGGGGAAATGGATATAA 58.710 38.462 0.00 0.00 0.00 0.98
2152 3378 6.691491 GCAGAGAAACAGGGGAAATGGATATA 60.691 42.308 0.00 0.00 0.00 0.86
2164 3453 2.503895 ATTGGAGCAGAGAAACAGGG 57.496 50.000 0.00 0.00 0.00 4.45
2165 3454 6.352516 ACTATTATTGGAGCAGAGAAACAGG 58.647 40.000 0.00 0.00 0.00 4.00
2248 3544 3.346315 CATGTAAACCAGCAGTCCATGA 58.654 45.455 0.00 0.00 33.82 3.07
2308 3605 9.623000 AGTAACTACTAAACAAAGTTTGGTGAT 57.377 29.630 19.45 1.84 35.23 3.06
2404 3702 3.062763 CACACAAGGTTTTGTTTGCACA 58.937 40.909 0.00 0.00 45.01 4.57
2463 3762 2.930040 AGCGGATTGATTACTTCACACG 59.070 45.455 0.00 0.00 32.84 4.49
2578 3880 5.406780 GCTTAGATCCAAATCAGTGTATCGG 59.593 44.000 0.00 0.00 34.07 4.18
2580 3882 7.212976 TGAGCTTAGATCCAAATCAGTGTATC 58.787 38.462 0.00 0.00 34.07 2.24
2583 3885 5.426689 TGAGCTTAGATCCAAATCAGTGT 57.573 39.130 0.00 0.00 34.07 3.55
2699 4003 6.016693 TGCAACATCTTTACCGAAATCTTTGA 60.017 34.615 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.