>input_sequence_68811
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-----------TCCTGACTTTA---GCTTAGATCAAGT------------------------------------------
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-------------------------------------ACATATATCCTCTGTTCCTCCCCCGCAAACGATA----GACAG
GCCTGGCCGGCGCAGCCTGCGACGTTCGAGCTCCCGCCGCGCGTCCACGCGTCGTCTCCGGCCATGGGGTTCCCCCTGGT
GTGCTACTGCGTTGCCATCCCCAAGCCGGTCATCGCCTTCTGCAAGCTCGTCGCCGCCGTCAGGGACGCCTTCCTCCTGC
TGCTCTCCCTCGTCGGCCTCTGCCGCTCCCCGCGCCGCTCCGTGGACGACGCCCCGCTGCCCGAGGAGGTCAAGGAGCGC
CTCCCGGCCGTCGAGTTCTCCTTGCTGGCGCGTCCGGCAA------AGCAGGGGTGCCACGACGGGGACGACGACGTCGC
CGCCGCGGCGGCCACGTGCATCGTGTGCCTGGAGAGGCTGCGGGCGGCGGACGAGGTGCGGCGGCTGGGCAACTGCGCGC
ACGCCTTCCACCGCGGCTGCATCGACGGGTGGATCGACCTCGGCCGGACCACCTGCCCGCTGTGCCGCTCCCACCTGCTG
CCCCGCGCGCGGAGGGACGGCCCGCTCGCCAGCCTCCTCACGCGCGTTTGGTGACGACCAACCGCGCCACTCGTT----A
GCTCGGAGGCCACGTCTTTCGTTGTCCCAGCGCGGTGGCGGCCGACACAGAGATTCGCGATCTCGACCGGCTGCATGTAT
ATTTAAAGATTGTGGGTTTACATCGTCTCAAAATCGGGATTTTATTTAG--------TTTAGGGCGCCACTTTGTA---T
AGCCATCCAATCAAGAGGTCACCAATAG----------------------------------------------------
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>chr6D_1_TraesCS6D01G240300
ACGAGTCGCTACACCCGACGGTCTATATCAGTTCAATCACTCCCTCTTTCACAACTCTAGCCATCATCTACTGCTTTCCG
CGATCCCATCCCGATGACCGCGTGCATAGTTGGTCGAGAGAGCAGATGCCTCCGGAACCCTGTCGTTCGAGATATTGCGC
GGGAGAACGGCAATAAGGTTTTTGGGGAGCCTCTCGACGCGACTGCTCTCGATCCGTCCCTCTCTACGTCCGTCTCTGCT
TTCACTTCTTCCTCCGCGTCGACTTGGCTGACAACGAAGCCGCCAAGAAGAAGGCCTCGGCCGATGCCAAGGCTGCCGCT
GCCGATGCCCGTCGCGTTGGCCTGGCCAACCGGAGGATATGACTCGTCCATCTCTTAGCTGCTCATTCATGTGCTGGCCA
TATATATGTTGTTCATAGATATTTCGGTTTGTACATGCTCACATGCTCAGGTATCGGTACGAGGTGTATACCGTGTTTGT
CATGTTTACTGTTTTCTCGTGGATTAGATTAGTTCTAATATTCCCAACACAAACATATACGGTGGGAAAATCTCGTTACA
AGCGGCACCAATCAGCCTCCGGTCTAAAGATTAG-CATATAGGCGAAGCCCGCGTCAACGTCCCAGGCTT----TCCCCC
TCGCCTAAATCGCTCGTGTTGTCCCATGCGTGCCAAGTCCATGCTAGTGCACTACCCAAGGATGGACCGCACGTCCCTGC
CACCACGCGGGCGTT----CTTACCAT---------------------CGCGTCACTCGTCCCCCGCGTTTTAACGACCT
--GGGCACTGGGCAGCTTCCGCGCACGAGCCGAGCACGCACGCACGCACGCACGCCGGCCATTTCCCATGCCGAGAGACG
TACGGCGAGCTCGT--------CCCGTGTCCCCTCCGTCCACCCCTCCCCAACTCTTTCCGGTCCGCGTTATCCTCCACC
AAAACCACGTGAAACTCTCCAA-CTCTGCTTCCTTCGCCATCTCTGC----------CGCTCTATATAACCAGCGAGCGC
CCGCGCTTTCCTCCTGACTTTA---GCTTAGATCAAGT------------------------------------------
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-------------------------------------ACATATATCCTCTGTTCCTCCCCCGCAAACGATA----GACAG
GCCTGGCCGGCGCAGCCTGCGACGTTCGAGCTCCCGCCGCGCGTCCACGCGTCGTCTCCGGCCATGGGGTTCCCCCTGGT
GTGCTACTGCGTTGCCATCCCCAAGCCGGTCATCGCCTTCTGCAAGCTCGTCGCCGCCGTCAGGGACGCCTTCCTCCTGC
TGCTCTCCCTCGTCGGCCTCTGCCGCTCCCCGCGCCGCTCCGTGGACGACGCCCCGCTGCCCGAGGAGGTCAAGGAGCGC
CTCCCGGCCGTCGAGTTCTCCTTGCTGGCGCGTCCGGCAA------AGCAGGGGTGCCACGACGGGGACGACGACGTCGC
CGCCGCGGCGGCCACGTGCATCGTGTGCCTGGAGAGGCTGCGGGCGGCGGACGAGGTGCGGCGGCTGGGCAACTGCGCGC
ACGCCTTCCACCGCGGCTGCATCGACGGGTGGATCGACCTCGGCCGGACCACCTGCCCGCTGTGCCGCTCCCACCTGCTG
CCCCGCGCGCGGAGGGACGGCCCGCTCGCCAGCCTCCTCACGCGCGTTTGGTGACGACCAACCGCGCCACTCGTT----A
GCTCGGAGGCCACGTCTTTCGTTGTCCCAGCGCGGTGGCGGCCGACACAGAGATTCGCGATCTCGACCGGCTGCATGTAT
ATTTAAAGATTGTGGGTTTACATCGTCTCAAAATCGGGATTTTATTTAG--------TTTAGGGCGCCACTTTGTA---T
AGCCATCCAATCAAGAGGTCACCAATAGGTGCACAAGCATAGTTTTTTTTT--CGTAGAGAAGGATTAGTTGGTCCAATA
TATGCCTGGTCGTGTTTGGCTAGTGGATCTCGAAATGTCAACAGCTCCAAAACGCATGTCGCTGTTCGACTTGTACAATC
CCAGTCGTGGGACTACGACGTACAGTTGTA---TAACTCATACACTTATGCTTCATTAAAAAAAAACTTGATGATTGTTT
GCTGACCGAGTTTTAATTTTTTGGTTCCGTCTAGTACCTCAATTTGCAGTGGCCAATAGTGCGTGGGGAAGATTCTGGAC
ACGAACATGTGCACATTC----------------------AGTTCGGAAAAGACAGAAGTCACCTTAATTGATTGATTTT
TAGCCCTATTAACGAGTTA-------------------------------------------------------------
--TATCCATTTCCCCTGTTTCTCTGC-------TCCAATAATAGTCACCACACAACAGGAACAGGACCCTATATATAGCG
CGTAACCTCCAAATAATTCAATCTCATGGACTGCTGGTTTACATGGGAAGACCAACGGACGAA-ATCACTTCCTTTAGTG
TAATATCACCAAACTTTGTTTAGTAGTTACTACTAGCACATATGCCAGTGCGTTATAACGGGACAAAAAATAACGTGCAT
TAAAATTTAGTGAGAAT-ATATGTGCAAACAAAACCTTGTGTGCACG-CAGGAAGGAACATTTAGATTCTGGGTTTCGCC
GCGTGTGAAGTAATCAATCCGCTAACTTTCCATTCATTGATCGAGGGAATTTAAGGGGGTTGATTGTTTTTTTTT---TT
GAGAAACACATGTAATTTTATTTATACTCATAACAATTACCGATACACTGATTTGGATCTAAGCTCAAAGAAAGTACAAA
GTAACTCTTAACTAAG--AATTATAATGAAATTTCTTGGGAACACCTTCTTCGTAGTATCAATCTTTGCTAGAAGAAATA
CTTCAAAGATTTCGGTAAAGATGTTGCAATTGGACGGAAGCAACAATGTTGTCACTCTTTCACCCGCACGAACATTACCA
ATAATGATTTTTG
>chr6A_533
ACATTACC------------------------------------------------------------------------
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-------------------------------------------------------------GTGGGAAAATCCCGTTACA
GGCGGCACCAATCAGCCTCCGGTCTAAAAAGATTACATATGGGCGAAGCCCGCGTCAACGTCGCAGGCTTTTTCTCCCCC
TCGCCTAAATCGCTCGTGTTGTCCCATGCGTGCCGAGTCCATGCCAGTGCACGACCCAAGGATGGACCGCACGTCCCCGC
CACCACGCGGGCGTTCGTACTTACCAT---------------------CGCGTCACTCGTCCCCCGCGTTTTAACGACCC
GGG----CTGGGCAGCTTCCGCGCACG-----------CACGCACGCACGCACGCTGGCCATTTCCCATGCCGGGAGACG
TACGGCGAGGTCGT--------CCCGTGTCCCCTCCGTCCACCCCTCCCCAACCCTTCCCGGCCCGCGTTATCCTCCACC
AAAACCACGTGAAACTGACCGA-CTCTGCTTCCTTTCTCCCTTCTCTCCCCGCCGCTCGCTCTATATAACCTGCGAGCGC
GCGCGCTTTCCTCCTGACTTTG---GCTT-GATCAAGTAGGTATATATACATATCCTCTG--------------------
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------------------------------------------------CTGCTCCTCCCCCGCAAACGATC----GACGG
GCCTGGCCGGCGCAGCCTGCGACGTCCGAGCTCCCGCCGCGC----------CGTCTCCGGCCATGGGGTTCCCCCTGGT
GTGCTACTGCGTCGCCATCCCCAAGCCGATCATCGCCTTCTGCAAGCTCGTCGCCGCCGTCCGGGACGCCCTCCTCCTGC
TGCTCTCCCTCGTCGGCCTCTGCCGCTCCCCGCGCCGCTCCGTCCACGACGCCCCGCTGCCCGAGGAGGTCAAGGAGCGC
CTCCCGGCCGTCGAGTTCTCCTTGCTGGCGCGTCCGGCGCAGCAGCAGCAGGGGTGCCACGACGGGGACG---------C
CGCGGCGGCGGCGACGTGCATCGTGTGCCTGGAGCGGCTGCGGGCGGCGGACGAGGTGCGGCGGCTGGGCAACTGCGCGC
ACGCCTTCCACCGCGGCTGCATCGACGGGTGGATCGACCTCGGCCGGACCACCTGCCCGCTGTGCCGCTCCCACCTACTG
CCCCGCCCGCGGAGGGACGGCCCGCTCGCCAGCCTCCTCACGCGCGTTTGGTGACGACCAACCGCGCCACTCGTTCGTTA
GCTCCAAGGCCACGTCTTTCCTTGTCCCAGCGCGGTGGCGGCCGACACAGAGATTCGCGATCTCGACCGGCTGCACGTAT
ATTT----ATTGTGGGTTTACATCGTCTCAAAATCGGGATTTTATTTAGTAATTTAGTTTAGGGCGCCACTTTGTA---T
AGCCATCCAATCACGAGGTCACCAATAGGTGCACAAGCATAGTTTTTTTTTTCCGTAGAGAAGGATTAGTCGGTCAAATA
TATGCGTGGTCGTGTTTGGCTAGTGGATCT-GAAATGTCAACAGCTCGAGAACGCATGTCGCTGTTCGACTTGTCCAATC
CCACTCGTGGGACTACGACGTACAGTTGTAGTATAACTCATACTTGATTCTTCATATC------AAATTGATGATTGTTT
GCTGCCTGAGTTTTGTTTTTTTGGTTCCGTGTCGTACTTCAATTTGCAGAGGCCAATAATGCGCGCGGGAGATTCTGGAC
ACGAACATGTGCACATTCCGCACCTTAGTTAAGACTACACAGTTCGGAAAAGACAGAAGTCACCTTGATTGATTGTTTTT
TAGCCCTGTAAACCCCAAG--ACAGTCACGTATGGCTCCACGGTATTAAGACCGAACATA-------GAACTATGAACGG
GTTGTCCATTTCATCTGTTTCTCTGCTCCAGTATCCAATAATGGCCACCACACAACAGGAACAGGACCCTATATATAGCG
CGTAACCTCCAAATAATTCAATCCCATGGACTGCTGGTTTACATGGGAAGACCAACGGATGAAGATCACTTCCTTTAGTA
TAATCTCACCAAACTTTGTTTAGGAGT---TACTAGCACATATGCCCGTGCGTTGCAACGGAACAAAAAATAGCATGCAT
TTAAGTTGAGTGAGAAT-ACACGTGCAAGTAAAACCTTGTG---ACG-CGGGAAGGAACCTTTAGATTCTGGGTTTCGCC
GTGTGTGAAGTAATGAATCCGCTAACTTTTCATTCATTGATCGAGGGGATTTAAGGGGTTTGATAGTTTTTTTTTCTTTT
GAGAAACACATGTAGTTTTATTTATACTCATAACAATTATCAATGCACTGATTTGGATCTAAGCTCAAAGAAAGTACAAA
GTAACTCTTATGACTACAAATTATAATGAAATTTCTTGGGAACACCTTCTTCGCAGTATCAATCTCTGCTAGAAGAAATA
CTCCAAAGATTTCGGTAAAGATGTTGCAATTGGACGGAAGCAACAATGTTGTCACTCTTTCACCCGCACAAACATTGCCA
ATAATGATTTTTG
>chr6B_649
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-------------TCGCGTTGTCCCATGCGTGCCAAGTCCATGCCAATGCACTACCGAAGGATGGACTGCACGTCCCTGC
CACCACGCGGGCGTTCAACAATTTGTACGGTATACGGGTTATTTCCGCCGCGTCAGTCGTCCCTCGCGTTTTAACGACCT
--G----CTAGGCAGCTTCCGCGCACGAGCCGAG----CACGCCCGCACGCCCGCCGGCCATTTCCCATG-------ACG
TACGGCGAGCTCATTCCATTCGCCCGTGTCCCCTCCGTCCACCCCTCCCCAACCCTTCCCGGTCCGCGTTATCCTCCACC
AAAACCACGTGAAACTCTCCAAACTCTGCTTCCTTCGCTCTCTCTGC----------CGCTCTATATAACCTGCGAGCGC
GCGCGCTTTCCTCCTGGCTCAGCTCGCTC-GATCAAGCATATATATATATATATATATAGAGTTAAATGCACTGGAGGTC
CTAAAAATTTCATCGGGGTGTCACTTTAGTCCTAATTCTTCCAAATTACATTTTTAGGTCCTAATTCTTTAGTAAGTGGT
TCACCCGAGGTCCTTTTTTCATGAGTGCTCGCTGACCTGCCCGCGTGGCGCGTTGACCCATGCCACGTCAATACAGGGCC
CAATCGCGTGGCGAGAGAAATACACTAGAGGTCCTAAAAGTTTCTGGACAGTATCACCTTAGTCCTACTTTTAAAATGCA
CGTTTAGGTCCTAATTCTATAGTAAGTGGTTCACCCGAGGTCCTTTTTTGCAGCATCGCTCACTGACCTGCTCGGTTGCG
CGTTGAACCATGCCAGGTCGACTTAACTTTTTGGCCGCTATCGTCCCGTAGCTATGTGATTTCCTCTACTCTGCCACAAT
CACTAGCTGTAGGCATTGATTTAGTTCGATTTGCACTTTTTCATTAAGTTTCTTAAACCGCTTGCTCTGATTTGAGGTTA
GGTGATAGGAGCTTGTGGAGGAGGTGGTGCCGACGATGCTGCTGCAATGCTCCCCTTCGTCACACGCTTCCCTACCGAGG
AGCTTACCGTCCCAGCCATGGGGATGGTGTGGGCACGAGAGAGAGGGAGAGGATTCCGGTAGGGGCTGGGAAATGTCAAG
AGGGGGGGTTAACAAGGGGCTTTATGTAAAAAAAGAGCAACCGCAGCAGCCTATAAGTTGACATGGTGTGGCTCAACTCG
TCATGCGAGCAGGTCAGCAACCGCTCGTGCAAAAAAAGGGCCTCGGATGAACCATTTACTATAGAATTAGGACCGAAACG
TTCATTTTGAAAGAAGTGGGACTAAAGTGACACTGCGCAGAAACTTTTAGGACGTTTCTCGCCTGGCGGTTGGGCCCTGT
GTTGATGTGGCGCGGGTCAACGCGCCACGCAGGCAGGTCAATGAGCGTTCGTGAAAAAAGAACCTCGGATGAACCACTTA
CTAAAGAATTAGGACCTAAATATGCATTTTGGAAGAATTGGGACTAAAGTGACACCCCAACAAAACTTTTAGGACCTCCG
GTGCATTTAACTCTCATATATATGTATATATATACAGACATACATCCTCTCCTCCTCGTCCCGCCCGCAACAAACGACAG
GCCTGGCCGGCGCAGCCTGCAACGTTCGAATTCCCGCCGCG----CACGCGTCGCCTCCGGCCATGGGGTTCCCCCTGGT
GTGCTACTGCGTCGCCATCCCCAAGCCGGTCATCGCCTTCTGCAAGCTCGTCGCCGCCGTCAGGGACGCCCTCCTCCTGC
TGCTCTCCCTCGTCGGCCTCTGCCGCTCCCCGCGCCGCTCTGTGGACGACGCCCCGCTGCCCGAGGAGGTCAAGGAGCGC
CTCCCGGCCGTCGAGTTCGGCTGCCTGGCGCGTCCGGCGCAGCAGCAGCAG------CACGACGGGGACGACGACGAGGT
CGCCGCCGCGGCGACGTGCATCGTGTGCCTGGAGAGGCTGTGGGCGACGGACGAGGTGCGGCGGCTGGGCAACTGCGCGC
ACGCCTTCCACCGGGGCTGCATCGACGGGTGGATCGACCTCGGCCGGACCACCTGCCCGCTGTGTCGCTCCCACCTACTG
CCTCGCGCGCGGAGGGACGGCCCGCTCGCCAGCCTCCTCACGCGCGTTTGGTGACGACCAACCGCGCCAG------GTTA
GCTCGAAGGCCACGTCTTTCGTTTTCCCAGCGCGGTGGCGGCCGACACAGAGATTCGCGATCTCGACCGGCTGCATGTGT
ATTTAA----TGTGGGTTTACATCATCTCAAAATTGGGATTTTATTTAGCTTATTA--TTAGGGCGCCACTTTGTATAGT
AGCCATCCAATCACGAGGTCACCAATAGGTGCATACGCATAGTTTTTTCCCCCCGTAGAGAAGGATTCTTTGGTCGAACA
TATGTGTACTAGCGTTTGGTTAGTGGATCTCGAAATGTCAACAGCTCCAAAACGCATGTTGCTGTTCGACTTGTACAATC
CCAGTTGTGGGACTACGACGTACAGTTGTA---TAACTCATACACTTATGCTTCAT--AAAAAAAGCTTGATGATTGTTT
GCTGACCGAGTTTTAATTTTTTGGTTCCGTCTAGTACCTCAATTTGCAGTGGCCAATAGTGCGTGAGGGAGATTCTGGAC
ACGAACATGTGCACATTCCGCACCTTAGTTAAGTCTACACAGTTTGGAAAAGACAGAAGTCACCTTGTTTGATTGATTTT
TAGCCCTATATAAACCCCAACACAGTCACGTATGGCTCCACGGTATTAAGACCGAACATACAACATAGAACTATGAACGG
GTTATCCATTTCATCTGTTTCTCTGCT-------CCAATAATAGTCACCACACAACAGGAACCAACGGGAAG--------
---AACCTCTAAATAATTCAATCCCATGGACTGCTGGTTTACATGGGAAGATCAACGGATGAA-ATCACTTA-TTTTGTG
TAATCCCACCAAACTTTGTTTAGGAGT---TACTAGCACATATGCCCGTGCGTTGCAGCAGGAGAAAAAATAGTGTGCAT
TTAAATTTAGTGAGAATTATACGTGCAAGCAAAACTTTGTGTGCACGTCAAGAAGGAACATTTAGGTTCTGGGTTTCGCC
ATATGTGAAGTAATCAATCCGCTAACTTTCCGTTCATTGATCGAGGGGATTTAAG-------------------------
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>SNPs
--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------
S---------------------------S-SSSS------S---------------------S-----------------
--------------------------------------------S-----------------------------------
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---SSSS---------------------------SSSS-----------------------------------S------
-----------------------------------------------------S---S----------------------
---------------------------------------S-------------------------------S--------
S--------------------S-------S--------------------------------------------------
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------------------------------------------S--------S------------------S---------
------------------------------------------SSS-----------------------------------
------------S---------------------------------------------------------S---------
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--------------------------------------SS------------------------------------SS--
------------S-------------------------------------------------------------------
----------------------------------------------------------------------------S---
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-----S--------------------------------------------------------------------------
------SS------------------------------------------------------------------------
-------------S-------------------------------------------------------------S----
-----S--------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-----------------------------------------------------------------S--S-----------
------------------------------------------------------------------S-------------
---------S---SSSSS--------------------------------------------------------------
------------SS------------------------------------------------------------------
-----------------------S-----------------------------------S--------------------
----S------------------S---SSS----------------S-------SS----------------S-------
-S-------------------S------S---------------------------------------------------
-S---------------------------------------------S----------S-----S---------------
--------------S------------------------S-S--S-----------------------------------
----------SSSSSS-------------------------------------S-----------S--------------
--S------------------------------------------------------------------S------S---
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>forward_132
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--------------------------------GTCGAGAGAGCAGATGCCTC----------------------------
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>reverse_2203
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------------------------------------------TATCCTCTGTTCCTCCCCCG------------------
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>forward_197
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-----------------GTTTTTGGGGAGCCTCTCGA-------------------------------------------
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>reverse_3046
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-----CTGGTCGTGTTTGGCTAGTG-------------------------------------------------------
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