Multiple sequence alignment - TraesCS6D01G232900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G232900 chr6D 100.000 1568 0 0 718 2285 327001640 327000073 0.000000e+00 2896.0
1 TraesCS6D01G232900 chr6D 100.000 583 0 0 1 583 327002357 327001775 0.000000e+00 1077.0
2 TraesCS6D01G232900 chr6D 94.541 458 19 6 128 583 8984499 8984046 0.000000e+00 702.0
3 TraesCS6D01G232900 chr3D 97.559 1475 35 1 718 2191 571521955 571520481 0.000000e+00 2523.0
4 TraesCS6D01G232900 chr3D 96.084 1481 51 4 718 2191 2390698 2392178 0.000000e+00 2407.0
5 TraesCS6D01G232900 chr3D 96.016 1481 53 4 718 2196 55541475 55542951 0.000000e+00 2403.0
6 TraesCS6D01G232900 chr3D 94.785 441 21 2 144 583 15846032 15846471 0.000000e+00 686.0
7 TraesCS6D01G232900 chr3D 94.395 446 21 4 140 583 331073876 331073433 0.000000e+00 682.0
8 TraesCS6D01G232900 chr5D 97.017 1475 43 1 718 2191 371076610 371075136 0.000000e+00 2479.0
9 TraesCS6D01G232900 chr5D 96.746 1475 46 2 718 2191 193611336 193609863 0.000000e+00 2457.0
10 TraesCS6D01G232900 chr5D 95.932 1475 54 5 718 2191 417810571 417812040 0.000000e+00 2386.0
11 TraesCS6D01G232900 chr5D 96.214 449 15 2 136 583 26843758 26843311 0.000000e+00 734.0
12 TraesCS6D01G232900 chr5D 95.730 445 15 3 143 583 77888797 77888353 0.000000e+00 713.0
13 TraesCS6D01G232900 chr5D 93.913 115 4 3 2171 2285 489609844 489609733 1.090000e-38 171.0
14 TraesCS6D01G232900 chr1D 96.339 1475 51 2 718 2191 443108544 443110016 0.000000e+00 2422.0
15 TraesCS6D01G232900 chr1D 96.372 441 15 1 144 583 114304469 114304909 0.000000e+00 725.0
16 TraesCS6D01G232900 chr1D 98.000 100 2 0 2186 2285 339090274 339090175 8.390000e-40 174.0
17 TraesCS6D01G232900 chr1D 96.190 105 2 2 2182 2285 221302246 221302349 1.090000e-38 171.0
18 TraesCS6D01G232900 chr7D 95.932 1475 58 2 718 2191 501413647 501412174 0.000000e+00 2390.0
19 TraesCS6D01G232900 chr7D 94.222 450 22 3 136 583 102554032 102554479 0.000000e+00 684.0
20 TraesCS6D01G232900 chr7D 95.327 107 4 1 2180 2285 565517932 565518038 3.900000e-38 169.0
21 TraesCS6D01G232900 chr7D 94.521 73 4 0 1 73 575081261 575081189 1.860000e-21 113.0
22 TraesCS6D01G232900 chr4D 94.915 1475 72 3 718 2191 98461626 98460154 0.000000e+00 2305.0
23 TraesCS6D01G232900 chr4D 94.796 442 19 4 144 583 85734579 85735018 0.000000e+00 686.0
24 TraesCS6D01G232900 chr7A 94.369 444 21 4 143 583 699472764 699472322 0.000000e+00 678.0
25 TraesCS6D01G232900 chr1A 95.327 107 4 1 2180 2285 509007958 509007852 3.900000e-38 169.0
26 TraesCS6D01G232900 chr7B 93.043 115 3 4 2174 2285 703253274 703253386 1.820000e-36 163.0
27 TraesCS6D01G232900 chr7B 94.340 106 5 1 2180 2285 604355202 604355098 6.530000e-36 161.0
28 TraesCS6D01G232900 chr7B 90.756 119 7 3 2170 2285 259966247 259966130 3.040000e-34 156.0
29 TraesCS6D01G232900 chr4B 97.872 94 2 0 2192 2285 30030316 30030223 1.820000e-36 163.0
30 TraesCS6D01G232900 chr4B 93.243 74 5 0 1 74 647711279 647711352 2.400000e-20 110.0
31 TraesCS6D01G232900 chr4B 94.828 58 3 0 4 61 648094504 648094447 8.690000e-15 91.6
32 TraesCS6D01G232900 chr2A 94.444 72 4 0 3 74 85293427 85293498 6.670000e-21 111.0
33 TraesCS6D01G232900 chr5A 95.082 61 3 0 3 63 589583610 589583670 1.870000e-16 97.1
34 TraesCS6D01G232900 chr5A 93.220 59 4 0 3 61 92220206 92220148 1.120000e-13 87.9
35 TraesCS6D01G232900 chr2B 96.875 32 1 0 39 70 23918126 23918095 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G232900 chr6D 327000073 327002357 2284 True 1986.5 2896 100.000 1 2285 2 chr6D.!!$R2 2284
1 TraesCS6D01G232900 chr3D 571520481 571521955 1474 True 2523.0 2523 97.559 718 2191 1 chr3D.!!$R2 1473
2 TraesCS6D01G232900 chr3D 2390698 2392178 1480 False 2407.0 2407 96.084 718 2191 1 chr3D.!!$F1 1473
3 TraesCS6D01G232900 chr3D 55541475 55542951 1476 False 2403.0 2403 96.016 718 2196 1 chr3D.!!$F3 1478
4 TraesCS6D01G232900 chr5D 371075136 371076610 1474 True 2479.0 2479 97.017 718 2191 1 chr5D.!!$R4 1473
5 TraesCS6D01G232900 chr5D 193609863 193611336 1473 True 2457.0 2457 96.746 718 2191 1 chr5D.!!$R3 1473
6 TraesCS6D01G232900 chr5D 417810571 417812040 1469 False 2386.0 2386 95.932 718 2191 1 chr5D.!!$F1 1473
7 TraesCS6D01G232900 chr1D 443108544 443110016 1472 False 2422.0 2422 96.339 718 2191 1 chr1D.!!$F3 1473
8 TraesCS6D01G232900 chr7D 501412174 501413647 1473 True 2390.0 2390 95.932 718 2191 1 chr7D.!!$R1 1473
9 TraesCS6D01G232900 chr4D 98460154 98461626 1472 True 2305.0 2305 94.915 718 2191 1 chr4D.!!$R1 1473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 391 0.034198 TGTGTAAAGTGCAGCGCCTA 59.966 50.0 2.29 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 1451 0.605589 TCTGACGACGCTCTTCCTCA 60.606 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.566197 GCCTTAATCATATGGAAGTGAAGG 57.434 41.667 2.13 8.63 0.00 3.46
24 25 6.299141 GCCTTAATCATATGGAAGTGAAGGA 58.701 40.000 16.87 0.00 0.00 3.36
25 26 6.429385 GCCTTAATCATATGGAAGTGAAGGAG 59.571 42.308 16.87 3.34 0.00 3.69
26 27 6.939163 CCTTAATCATATGGAAGTGAAGGAGG 59.061 42.308 2.13 0.00 0.00 4.30
27 28 4.989875 ATCATATGGAAGTGAAGGAGGG 57.010 45.455 2.13 0.00 0.00 4.30
28 29 4.007581 TCATATGGAAGTGAAGGAGGGA 57.992 45.455 2.13 0.00 0.00 4.20
29 30 4.370776 TCATATGGAAGTGAAGGAGGGAA 58.629 43.478 2.13 0.00 0.00 3.97
30 31 4.410228 TCATATGGAAGTGAAGGAGGGAAG 59.590 45.833 2.13 0.00 0.00 3.46
31 32 2.118403 TGGAAGTGAAGGAGGGAAGT 57.882 50.000 0.00 0.00 0.00 3.01
32 33 2.418669 TGGAAGTGAAGGAGGGAAGTT 58.581 47.619 0.00 0.00 0.00 2.66
33 34 3.593942 TGGAAGTGAAGGAGGGAAGTTA 58.406 45.455 0.00 0.00 0.00 2.24
34 35 3.583086 TGGAAGTGAAGGAGGGAAGTTAG 59.417 47.826 0.00 0.00 0.00 2.34
35 36 3.055021 GGAAGTGAAGGAGGGAAGTTAGG 60.055 52.174 0.00 0.00 0.00 2.69
36 37 2.552367 AGTGAAGGAGGGAAGTTAGGG 58.448 52.381 0.00 0.00 0.00 3.53
37 38 2.113777 AGTGAAGGAGGGAAGTTAGGGA 59.886 50.000 0.00 0.00 0.00 4.20
38 39 2.910977 GTGAAGGAGGGAAGTTAGGGAA 59.089 50.000 0.00 0.00 0.00 3.97
39 40 3.055021 GTGAAGGAGGGAAGTTAGGGAAG 60.055 52.174 0.00 0.00 0.00 3.46
40 41 3.182976 GAAGGAGGGAAGTTAGGGAAGT 58.817 50.000 0.00 0.00 0.00 3.01
41 42 2.552367 AGGAGGGAAGTTAGGGAAGTG 58.448 52.381 0.00 0.00 0.00 3.16
42 43 2.157989 AGGAGGGAAGTTAGGGAAGTGT 60.158 50.000 0.00 0.00 0.00 3.55
43 44 3.078612 AGGAGGGAAGTTAGGGAAGTGTA 59.921 47.826 0.00 0.00 0.00 2.90
44 45 3.451540 GGAGGGAAGTTAGGGAAGTGTAG 59.548 52.174 0.00 0.00 0.00 2.74
45 46 2.838813 AGGGAAGTTAGGGAAGTGTAGC 59.161 50.000 0.00 0.00 0.00 3.58
46 47 2.838813 GGGAAGTTAGGGAAGTGTAGCT 59.161 50.000 0.00 0.00 0.00 3.32
47 48 3.263681 GGGAAGTTAGGGAAGTGTAGCTT 59.736 47.826 0.00 0.00 40.76 3.74
48 49 4.468868 GGGAAGTTAGGGAAGTGTAGCTTA 59.531 45.833 0.00 0.00 37.59 3.09
49 50 5.395435 GGGAAGTTAGGGAAGTGTAGCTTAG 60.395 48.000 0.00 0.00 37.59 2.18
50 51 5.395435 GGAAGTTAGGGAAGTGTAGCTTAGG 60.395 48.000 0.00 0.00 37.59 2.69
51 52 4.685807 AGTTAGGGAAGTGTAGCTTAGGT 58.314 43.478 0.00 0.00 37.59 3.08
52 53 4.466726 AGTTAGGGAAGTGTAGCTTAGGTG 59.533 45.833 0.00 0.00 37.59 4.00
53 54 3.185880 AGGGAAGTGTAGCTTAGGTGA 57.814 47.619 0.00 0.00 37.59 4.02
54 55 2.832733 AGGGAAGTGTAGCTTAGGTGAC 59.167 50.000 0.00 0.00 37.59 3.67
56 57 3.261137 GGGAAGTGTAGCTTAGGTGACTT 59.739 47.826 9.42 9.42 43.67 3.01
57 58 4.262938 GGGAAGTGTAGCTTAGGTGACTTT 60.263 45.833 10.52 0.00 43.67 2.66
58 59 4.930405 GGAAGTGTAGCTTAGGTGACTTTC 59.070 45.833 10.52 6.46 43.67 2.62
59 60 4.538746 AGTGTAGCTTAGGTGACTTTCC 57.461 45.455 0.00 0.00 43.67 3.13
60 61 4.161102 AGTGTAGCTTAGGTGACTTTCCT 58.839 43.478 0.00 0.00 43.67 3.36
61 62 4.221041 AGTGTAGCTTAGGTGACTTTCCTC 59.779 45.833 0.00 0.00 43.67 3.71
62 63 3.514309 TGTAGCTTAGGTGACTTTCCTCC 59.486 47.826 0.00 0.00 43.67 4.30
63 64 2.909217 AGCTTAGGTGACTTTCCTCCT 58.091 47.619 0.00 0.00 43.67 3.69
64 65 3.252351 AGCTTAGGTGACTTTCCTCCTT 58.748 45.455 0.00 0.00 43.67 3.36
65 66 3.262151 AGCTTAGGTGACTTTCCTCCTTC 59.738 47.826 0.00 0.00 43.67 3.46
66 67 3.008049 GCTTAGGTGACTTTCCTCCTTCA 59.992 47.826 0.00 0.00 43.67 3.02
67 68 4.570930 CTTAGGTGACTTTCCTCCTTCAC 58.429 47.826 0.00 0.00 43.67 3.18
68 69 1.344763 AGGTGACTTTCCTCCTTCACG 59.655 52.381 0.00 0.00 39.46 4.35
69 70 1.070289 GGTGACTTTCCTCCTTCACGT 59.930 52.381 0.00 0.00 39.46 4.49
70 71 2.484947 GGTGACTTTCCTCCTTCACGTT 60.485 50.000 0.00 0.00 39.46 3.99
71 72 3.243975 GGTGACTTTCCTCCTTCACGTTA 60.244 47.826 0.00 0.00 39.46 3.18
72 73 3.988517 GTGACTTTCCTCCTTCACGTTAG 59.011 47.826 0.00 0.00 29.79 2.34
73 74 3.893200 TGACTTTCCTCCTTCACGTTAGA 59.107 43.478 0.00 0.00 0.00 2.10
74 75 4.527038 TGACTTTCCTCCTTCACGTTAGAT 59.473 41.667 0.00 0.00 0.00 1.98
75 76 4.822026 ACTTTCCTCCTTCACGTTAGATG 58.178 43.478 0.00 0.00 0.00 2.90
76 77 4.283722 ACTTTCCTCCTTCACGTTAGATGT 59.716 41.667 0.00 0.00 0.00 3.06
77 78 4.884668 TTCCTCCTTCACGTTAGATGTT 57.115 40.909 0.00 0.00 0.00 2.71
78 79 5.988310 TTCCTCCTTCACGTTAGATGTTA 57.012 39.130 0.00 0.00 0.00 2.41
79 80 5.578005 TCCTCCTTCACGTTAGATGTTAG 57.422 43.478 0.00 0.00 0.00 2.34
80 81 5.258841 TCCTCCTTCACGTTAGATGTTAGA 58.741 41.667 0.00 0.00 0.00 2.10
81 82 5.357314 TCCTCCTTCACGTTAGATGTTAGAG 59.643 44.000 0.00 0.00 0.00 2.43
82 83 5.450688 CCTCCTTCACGTTAGATGTTAGAGG 60.451 48.000 0.00 0.00 0.00 3.69
83 84 5.258841 TCCTTCACGTTAGATGTTAGAGGA 58.741 41.667 0.00 0.00 0.00 3.71
84 85 5.892119 TCCTTCACGTTAGATGTTAGAGGAT 59.108 40.000 0.00 0.00 0.00 3.24
85 86 6.039493 TCCTTCACGTTAGATGTTAGAGGATC 59.961 42.308 0.00 0.00 0.00 3.36
86 87 5.769484 TCACGTTAGATGTTAGAGGATCC 57.231 43.478 2.48 2.48 33.66 3.36
87 88 5.198207 TCACGTTAGATGTTAGAGGATCCA 58.802 41.667 15.82 0.00 33.66 3.41
88 89 5.067413 TCACGTTAGATGTTAGAGGATCCAC 59.933 44.000 15.82 8.01 33.66 4.02
89 90 5.067936 CACGTTAGATGTTAGAGGATCCACT 59.932 44.000 16.41 16.41 33.66 4.00
90 91 6.262496 CACGTTAGATGTTAGAGGATCCACTA 59.738 42.308 15.82 14.96 33.66 2.74
91 92 6.262720 ACGTTAGATGTTAGAGGATCCACTAC 59.737 42.308 17.49 13.08 33.66 2.73
92 93 6.294065 CGTTAGATGTTAGAGGATCCACTACC 60.294 46.154 17.49 12.02 33.66 3.18
93 94 4.145807 AGATGTTAGAGGATCCACTACCG 58.854 47.826 17.49 0.00 33.66 4.02
94 95 2.662866 TGTTAGAGGATCCACTACCGG 58.337 52.381 17.49 0.00 33.66 5.28
95 96 1.340568 GTTAGAGGATCCACTACCGGC 59.659 57.143 17.49 6.09 33.66 6.13
96 97 0.554305 TAGAGGATCCACTACCGGCA 59.446 55.000 15.82 0.00 33.66 5.69
97 98 0.757188 AGAGGATCCACTACCGGCAG 60.757 60.000 15.82 0.00 33.66 4.85
98 99 2.109181 GGATCCACTACCGGCAGC 59.891 66.667 6.95 0.00 0.00 5.25
99 100 2.109181 GATCCACTACCGGCAGCC 59.891 66.667 0.00 0.00 0.00 4.85
100 101 2.687200 ATCCACTACCGGCAGCCA 60.687 61.111 13.30 0.00 0.00 4.75
101 102 2.925162 GATCCACTACCGGCAGCCAC 62.925 65.000 13.30 0.00 0.00 5.01
102 103 4.015406 CCACTACCGGCAGCCACA 62.015 66.667 13.30 0.00 0.00 4.17
103 104 2.268920 CACTACCGGCAGCCACAT 59.731 61.111 13.30 0.00 0.00 3.21
104 105 2.108514 CACTACCGGCAGCCACATG 61.109 63.158 13.30 0.87 0.00 3.21
105 106 2.290287 ACTACCGGCAGCCACATGA 61.290 57.895 13.30 0.00 0.00 3.07
106 107 1.815421 CTACCGGCAGCCACATGAC 60.815 63.158 13.30 0.00 0.00 3.06
107 108 3.323758 TACCGGCAGCCACATGACC 62.324 63.158 13.30 0.00 0.00 4.02
109 110 4.758251 CGGCAGCCACATGACCGA 62.758 66.667 13.30 0.00 40.19 4.69
110 111 2.359850 GGCAGCCACATGACCGAA 60.360 61.111 6.55 0.00 0.00 4.30
111 112 2.690778 GGCAGCCACATGACCGAAC 61.691 63.158 6.55 0.00 0.00 3.95
112 113 1.672356 GCAGCCACATGACCGAACT 60.672 57.895 0.00 0.00 0.00 3.01
113 114 0.391130 GCAGCCACATGACCGAACTA 60.391 55.000 0.00 0.00 0.00 2.24
114 115 1.359848 CAGCCACATGACCGAACTAC 58.640 55.000 0.00 0.00 0.00 2.73
115 116 0.249398 AGCCACATGACCGAACTACC 59.751 55.000 0.00 0.00 0.00 3.18
116 117 1.082117 GCCACATGACCGAACTACCG 61.082 60.000 0.00 0.00 0.00 4.02
117 118 1.082117 CCACATGACCGAACTACCGC 61.082 60.000 0.00 0.00 0.00 5.68
118 119 1.153901 ACATGACCGAACTACCGCG 60.154 57.895 0.00 0.00 0.00 6.46
143 144 2.882876 GCAGAGCCACCAATGCTG 59.117 61.111 0.00 0.00 39.69 4.41
160 161 8.571461 CCAATGCTGGTAGATATCACATATTT 57.429 34.615 5.32 0.00 38.00 1.40
161 162 8.456471 CCAATGCTGGTAGATATCACATATTTG 58.544 37.037 5.32 5.27 38.00 2.32
162 163 9.223099 CAATGCTGGTAGATATCACATATTTGA 57.777 33.333 5.32 0.00 0.00 2.69
163 164 8.783833 ATGCTGGTAGATATCACATATTTGAC 57.216 34.615 5.32 0.00 0.00 3.18
164 165 7.161404 TGCTGGTAGATATCACATATTTGACC 58.839 38.462 5.32 0.00 0.00 4.02
165 166 7.016563 TGCTGGTAGATATCACATATTTGACCT 59.983 37.037 5.32 0.00 0.00 3.85
166 167 7.332926 GCTGGTAGATATCACATATTTGACCTG 59.667 40.741 5.32 0.00 0.00 4.00
167 168 8.491045 TGGTAGATATCACATATTTGACCTGA 57.509 34.615 5.32 0.00 0.00 3.86
168 169 8.588472 TGGTAGATATCACATATTTGACCTGAG 58.412 37.037 5.32 0.00 0.00 3.35
169 170 8.037758 GGTAGATATCACATATTTGACCTGAGG 58.962 40.741 5.32 0.00 0.00 3.86
170 171 7.013823 AGATATCACATATTTGACCTGAGGG 57.986 40.000 2.38 0.00 38.88 4.30
171 172 3.281727 TCACATATTTGACCTGAGGGC 57.718 47.619 2.38 0.00 35.63 5.19
172 173 1.942657 CACATATTTGACCTGAGGGCG 59.057 52.381 2.38 0.00 35.63 6.13
173 174 1.837439 ACATATTTGACCTGAGGGCGA 59.163 47.619 2.38 0.00 35.63 5.54
174 175 2.238646 ACATATTTGACCTGAGGGCGAA 59.761 45.455 10.00 10.00 35.63 4.70
175 176 3.278574 CATATTTGACCTGAGGGCGAAA 58.721 45.455 11.88 7.73 35.63 3.46
176 177 2.514458 ATTTGACCTGAGGGCGAAAT 57.486 45.000 11.88 9.76 35.63 2.17
177 178 1.821216 TTTGACCTGAGGGCGAAATC 58.179 50.000 3.99 0.00 35.63 2.17
178 179 0.690192 TTGACCTGAGGGCGAAATCA 59.310 50.000 2.38 0.00 35.63 2.57
179 180 0.690192 TGACCTGAGGGCGAAATCAA 59.310 50.000 2.38 0.00 35.63 2.57
180 181 1.073125 TGACCTGAGGGCGAAATCAAA 59.927 47.619 2.38 0.00 35.63 2.69
181 182 2.290896 TGACCTGAGGGCGAAATCAAAT 60.291 45.455 2.38 0.00 35.63 2.32
182 183 2.356069 GACCTGAGGGCGAAATCAAATC 59.644 50.000 2.38 0.00 35.63 2.17
183 184 2.290896 ACCTGAGGGCGAAATCAAATCA 60.291 45.455 2.38 0.00 35.63 2.57
184 185 2.954318 CCTGAGGGCGAAATCAAATCAT 59.046 45.455 0.00 0.00 0.00 2.45
185 186 4.136796 CCTGAGGGCGAAATCAAATCATA 58.863 43.478 0.00 0.00 0.00 2.15
186 187 4.580167 CCTGAGGGCGAAATCAAATCATAA 59.420 41.667 0.00 0.00 0.00 1.90
187 188 5.067674 CCTGAGGGCGAAATCAAATCATAAA 59.932 40.000 0.00 0.00 0.00 1.40
188 189 5.890334 TGAGGGCGAAATCAAATCATAAAC 58.110 37.500 0.00 0.00 0.00 2.01
189 190 5.652014 TGAGGGCGAAATCAAATCATAAACT 59.348 36.000 0.00 0.00 0.00 2.66
190 191 5.894807 AGGGCGAAATCAAATCATAAACTG 58.105 37.500 0.00 0.00 0.00 3.16
191 192 5.652014 AGGGCGAAATCAAATCATAAACTGA 59.348 36.000 0.00 0.00 38.53 3.41
192 193 5.743872 GGGCGAAATCAAATCATAAACTGAC 59.256 40.000 0.00 0.00 36.48 3.51
193 194 5.743872 GGCGAAATCAAATCATAAACTGACC 59.256 40.000 0.00 0.00 36.48 4.02
194 195 6.404734 GGCGAAATCAAATCATAAACTGACCT 60.405 38.462 0.00 0.00 36.48 3.85
195 196 6.470235 GCGAAATCAAATCATAAACTGACCTG 59.530 38.462 0.00 0.00 36.48 4.00
196 197 6.470235 CGAAATCAAATCATAAACTGACCTGC 59.530 38.462 0.00 0.00 36.48 4.85
197 198 7.472334 AAATCAAATCATAAACTGACCTGCT 57.528 32.000 0.00 0.00 36.48 4.24
198 199 7.472334 AATCAAATCATAAACTGACCTGCTT 57.528 32.000 0.00 0.00 36.48 3.91
199 200 6.899393 TCAAATCATAAACTGACCTGCTTT 57.101 33.333 0.00 0.00 36.48 3.51
200 201 6.913170 TCAAATCATAAACTGACCTGCTTTC 58.087 36.000 0.00 0.00 36.48 2.62
201 202 5.551760 AATCATAAACTGACCTGCTTTCG 57.448 39.130 0.00 0.00 36.48 3.46
202 203 4.265904 TCATAAACTGACCTGCTTTCGA 57.734 40.909 0.00 0.00 0.00 3.71
203 204 3.994392 TCATAAACTGACCTGCTTTCGAC 59.006 43.478 0.00 0.00 0.00 4.20
204 205 2.325583 AAACTGACCTGCTTTCGACA 57.674 45.000 0.00 0.00 0.00 4.35
205 206 2.325583 AACTGACCTGCTTTCGACAA 57.674 45.000 0.00 0.00 0.00 3.18
206 207 2.325583 ACTGACCTGCTTTCGACAAA 57.674 45.000 0.00 0.00 0.00 2.83
207 208 2.639065 ACTGACCTGCTTTCGACAAAA 58.361 42.857 0.00 0.00 0.00 2.44
208 209 3.214328 ACTGACCTGCTTTCGACAAAAT 58.786 40.909 0.00 0.00 0.00 1.82
209 210 3.632145 ACTGACCTGCTTTCGACAAAATT 59.368 39.130 0.00 0.00 0.00 1.82
210 211 4.097892 ACTGACCTGCTTTCGACAAAATTT 59.902 37.500 0.00 0.00 0.00 1.82
211 212 4.606961 TGACCTGCTTTCGACAAAATTTC 58.393 39.130 0.00 0.00 0.00 2.17
212 213 4.097135 TGACCTGCTTTCGACAAAATTTCA 59.903 37.500 0.00 0.00 0.00 2.69
213 214 4.359706 ACCTGCTTTCGACAAAATTTCAC 58.640 39.130 0.00 0.00 0.00 3.18
214 215 4.097892 ACCTGCTTTCGACAAAATTTCACT 59.902 37.500 0.00 0.00 0.00 3.41
215 216 4.676924 CCTGCTTTCGACAAAATTTCACTC 59.323 41.667 0.00 0.00 0.00 3.51
216 217 4.278858 TGCTTTCGACAAAATTTCACTCG 58.721 39.130 0.00 0.00 0.00 4.18
217 218 3.664025 GCTTTCGACAAAATTTCACTCGG 59.336 43.478 10.49 0.32 0.00 4.63
218 219 2.961522 TCGACAAAATTTCACTCGGC 57.038 45.000 10.49 0.00 0.00 5.54
219 220 2.489971 TCGACAAAATTTCACTCGGCT 58.510 42.857 10.49 0.00 0.00 5.52
220 221 2.223144 TCGACAAAATTTCACTCGGCTG 59.777 45.455 10.49 0.00 0.00 4.85
221 222 2.223144 CGACAAAATTTCACTCGGCTGA 59.777 45.455 0.00 0.00 0.00 4.26
222 223 3.555518 GACAAAATTTCACTCGGCTGAC 58.444 45.455 0.00 0.00 0.00 3.51
223 224 2.293399 ACAAAATTTCACTCGGCTGACC 59.707 45.455 0.00 0.00 0.00 4.02
224 225 1.534729 AAATTTCACTCGGCTGACCC 58.465 50.000 0.00 0.00 0.00 4.46
225 226 0.693049 AATTTCACTCGGCTGACCCT 59.307 50.000 0.00 0.00 0.00 4.34
226 227 0.693049 ATTTCACTCGGCTGACCCTT 59.307 50.000 0.00 0.00 0.00 3.95
227 228 0.472471 TTTCACTCGGCTGACCCTTT 59.528 50.000 0.00 0.00 0.00 3.11
228 229 0.034896 TTCACTCGGCTGACCCTTTC 59.965 55.000 0.00 0.00 0.00 2.62
229 230 1.738099 CACTCGGCTGACCCTTTCG 60.738 63.158 0.00 0.00 0.00 3.46
230 231 2.207924 ACTCGGCTGACCCTTTCGT 61.208 57.895 0.00 0.00 0.00 3.85
231 232 1.738099 CTCGGCTGACCCTTTCGTG 60.738 63.158 0.00 0.00 0.00 4.35
232 233 2.030562 CGGCTGACCCTTTCGTGT 59.969 61.111 0.00 0.00 0.00 4.49
233 234 2.317609 CGGCTGACCCTTTCGTGTG 61.318 63.158 0.00 0.00 0.00 3.82
234 235 1.966451 GGCTGACCCTTTCGTGTGG 60.966 63.158 0.00 0.00 0.00 4.17
235 236 2.617274 GCTGACCCTTTCGTGTGGC 61.617 63.158 0.00 0.00 0.00 5.01
236 237 2.280524 TGACCCTTTCGTGTGGCG 60.281 61.111 0.00 0.00 43.01 5.69
237 238 3.723348 GACCCTTTCGTGTGGCGC 61.723 66.667 0.00 0.00 41.07 6.53
261 262 4.508128 GCTAGGCGCCGCACACTA 62.508 66.667 23.20 5.64 0.00 2.74
262 263 2.582498 CTAGGCGCCGCACACTAC 60.582 66.667 23.20 0.00 0.00 2.73
263 264 3.064987 CTAGGCGCCGCACACTACT 62.065 63.158 23.20 1.83 0.00 2.57
264 265 1.721664 CTAGGCGCCGCACACTACTA 61.722 60.000 23.20 3.15 0.00 1.82
265 266 1.105167 TAGGCGCCGCACACTACTAT 61.105 55.000 23.20 0.33 0.00 2.12
266 267 2.237751 GGCGCCGCACACTACTATG 61.238 63.158 12.58 0.00 0.00 2.23
267 268 2.871427 GCGCCGCACACTACTATGC 61.871 63.158 3.15 0.00 38.52 3.14
268 269 1.518352 CGCCGCACACTACTATGCA 60.518 57.895 0.00 0.00 42.17 3.96
269 270 1.482621 CGCCGCACACTACTATGCAG 61.483 60.000 0.00 0.00 42.17 4.41
270 271 1.766143 GCCGCACACTACTATGCAGC 61.766 60.000 0.00 0.00 42.17 5.25
271 272 1.482621 CCGCACACTACTATGCAGCG 61.483 60.000 4.42 4.42 42.17 5.18
272 273 1.638467 GCACACTACTATGCAGCGC 59.362 57.895 0.00 0.00 41.65 5.92
273 274 1.766143 GCACACTACTATGCAGCGCC 61.766 60.000 2.29 0.00 41.65 6.53
274 275 0.179100 CACACTACTATGCAGCGCCT 60.179 55.000 2.29 0.00 0.00 5.52
275 276 0.103208 ACACTACTATGCAGCGCCTC 59.897 55.000 2.29 0.00 0.00 4.70
276 277 0.387202 CACTACTATGCAGCGCCTCT 59.613 55.000 2.29 0.00 0.00 3.69
277 278 0.387202 ACTACTATGCAGCGCCTCTG 59.613 55.000 2.29 0.00 45.62 3.35
284 285 2.202987 CAGCGCCTCTGCCTTAGG 60.203 66.667 2.29 0.00 35.78 2.69
294 295 4.452733 GCCTTAGGCGTCGCACCT 62.453 66.667 20.50 10.37 39.62 4.00
295 296 2.202756 CCTTAGGCGTCGCACCTC 60.203 66.667 20.50 0.77 38.81 3.85
296 297 2.202756 CTTAGGCGTCGCACCTCC 60.203 66.667 20.50 0.35 38.81 4.30
297 298 2.678934 TTAGGCGTCGCACCTCCT 60.679 61.111 20.50 8.84 38.81 3.69
298 299 2.890847 CTTAGGCGTCGCACCTCCTG 62.891 65.000 20.50 0.00 38.81 3.86
318 319 4.385405 AGCGTGGCAGCTCTGGTC 62.385 66.667 5.75 0.00 45.67 4.02
320 321 4.007644 CGTGGCAGCTCTGGTCCA 62.008 66.667 0.00 0.00 0.00 4.02
321 322 2.046507 GTGGCAGCTCTGGTCCAG 60.047 66.667 13.21 13.21 0.00 3.86
322 323 2.527624 TGGCAGCTCTGGTCCAGT 60.528 61.111 18.65 0.00 32.61 4.00
323 324 2.149383 TGGCAGCTCTGGTCCAGTT 61.149 57.895 18.65 3.35 32.61 3.16
324 325 1.673665 GGCAGCTCTGGTCCAGTTG 60.674 63.158 18.65 15.38 32.61 3.16
325 326 2.331132 GCAGCTCTGGTCCAGTTGC 61.331 63.158 22.91 22.91 34.48 4.17
326 327 2.031516 CAGCTCTGGTCCAGTTGCG 61.032 63.158 23.54 17.72 37.22 4.85
327 328 2.743928 GCTCTGGTCCAGTTGCGG 60.744 66.667 18.65 6.51 32.61 5.69
328 329 2.743928 CTCTGGTCCAGTTGCGGC 60.744 66.667 18.65 0.00 32.61 6.53
329 330 4.329545 TCTGGTCCAGTTGCGGCC 62.330 66.667 18.65 0.00 32.61 6.13
336 337 4.641645 CAGTTGCGGCCCCACAGA 62.642 66.667 0.00 0.00 0.00 3.41
337 338 4.643387 AGTTGCGGCCCCACAGAC 62.643 66.667 0.00 0.00 0.00 3.51
338 339 4.947147 GTTGCGGCCCCACAGACA 62.947 66.667 0.00 0.00 0.00 3.41
339 340 4.641645 TTGCGGCCCCACAGACAG 62.642 66.667 0.00 0.00 0.00 3.51
343 344 3.958860 GGCCCCACAGACAGCACT 61.959 66.667 0.00 0.00 0.00 4.40
344 345 2.670934 GCCCCACAGACAGCACTG 60.671 66.667 0.00 0.00 42.78 3.66
345 346 2.670934 CCCCACAGACAGCACTGC 60.671 66.667 0.00 0.00 41.06 4.40
346 347 2.111669 CCCACAGACAGCACTGCA 59.888 61.111 3.30 0.00 41.06 4.41
347 348 1.964891 CCCACAGACAGCACTGCAG 60.965 63.158 13.48 13.48 41.06 4.41
348 349 2.614446 CCACAGACAGCACTGCAGC 61.614 63.158 15.27 0.57 41.06 5.25
349 350 2.664185 ACAGACAGCACTGCAGCG 60.664 61.111 15.27 5.22 41.06 5.18
350 351 4.086178 CAGACAGCACTGCAGCGC 62.086 66.667 19.00 19.00 40.15 5.92
353 354 3.939837 GACAGCACTGCAGCGCCTA 62.940 63.158 22.59 0.00 40.15 3.93
354 355 2.743538 CAGCACTGCAGCGCCTAA 60.744 61.111 22.59 0.00 40.15 2.69
355 356 2.435586 AGCACTGCAGCGCCTAAG 60.436 61.111 22.59 0.69 40.15 2.18
356 357 3.503363 GCACTGCAGCGCCTAAGG 61.503 66.667 15.95 0.00 0.00 2.69
357 358 3.503363 CACTGCAGCGCCTAAGGC 61.503 66.667 15.27 0.56 46.75 4.35
373 374 2.358737 GCTTAGGCGCCACACTGT 60.359 61.111 31.54 9.39 0.00 3.55
374 375 2.680913 GCTTAGGCGCCACACTGTG 61.681 63.158 31.54 11.92 0.00 3.66
375 376 1.301716 CTTAGGCGCCACACTGTGT 60.302 57.895 31.54 7.80 0.00 3.72
376 377 0.037697 CTTAGGCGCCACACTGTGTA 60.038 55.000 31.54 6.42 0.00 2.90
377 378 0.393448 TTAGGCGCCACACTGTGTAA 59.607 50.000 31.54 12.92 0.00 2.41
378 379 0.393448 TAGGCGCCACACTGTGTAAA 59.607 50.000 31.54 0.00 0.00 2.01
379 380 0.884704 AGGCGCCACACTGTGTAAAG 60.885 55.000 31.54 8.52 0.00 1.85
380 381 1.164041 GGCGCCACACTGTGTAAAGT 61.164 55.000 24.80 0.00 0.00 2.66
386 387 3.734683 CACTGTGTAAAGTGCAGCG 57.265 52.632 0.00 0.00 41.05 5.18
387 388 0.384725 CACTGTGTAAAGTGCAGCGC 60.385 55.000 0.00 0.00 41.05 5.92
388 389 1.207593 CTGTGTAAAGTGCAGCGCC 59.792 57.895 2.29 0.00 0.00 6.53
389 390 1.227823 TGTGTAAAGTGCAGCGCCT 60.228 52.632 2.29 0.00 0.00 5.52
390 391 0.034198 TGTGTAAAGTGCAGCGCCTA 59.966 50.000 2.29 0.00 0.00 3.93
391 392 1.338674 TGTGTAAAGTGCAGCGCCTAT 60.339 47.619 2.29 0.00 0.00 2.57
392 393 1.327764 GTGTAAAGTGCAGCGCCTATC 59.672 52.381 2.29 0.00 0.00 2.08
393 394 0.577269 GTAAAGTGCAGCGCCTATCG 59.423 55.000 2.29 0.00 42.12 2.92
411 412 3.289834 CTTGGGCGCTGCACAGTT 61.290 61.111 7.64 0.00 45.08 3.16
412 413 2.832661 TTGGGCGCTGCACAGTTT 60.833 55.556 7.64 0.00 45.08 2.66
413 414 3.136345 TTGGGCGCTGCACAGTTTG 62.136 57.895 7.64 0.00 45.08 2.93
414 415 3.595758 GGGCGCTGCACAGTTTGT 61.596 61.111 7.64 0.00 0.00 2.83
426 427 4.552166 CACAGTTTGTGTTCCACTTAGG 57.448 45.455 1.13 0.00 43.08 2.69
427 428 2.949644 ACAGTTTGTGTTCCACTTAGGC 59.050 45.455 0.00 0.00 34.94 3.93
428 429 3.214328 CAGTTTGTGTTCCACTTAGGCT 58.786 45.455 0.00 0.00 37.29 4.58
429 430 3.003689 CAGTTTGTGTTCCACTTAGGCTG 59.996 47.826 0.00 0.00 37.29 4.85
430 431 2.270352 TTGTGTTCCACTTAGGCTGG 57.730 50.000 0.00 0.00 37.29 4.85
431 432 0.250727 TGTGTTCCACTTAGGCTGGC 60.251 55.000 0.00 0.00 37.29 4.85
432 433 0.960861 GTGTTCCACTTAGGCTGGCC 60.961 60.000 3.00 3.00 37.29 5.36
433 434 1.378646 GTTCCACTTAGGCTGGCCC 60.379 63.158 8.11 0.00 37.29 5.80
434 435 2.966732 TTCCACTTAGGCTGGCCCG 61.967 63.158 8.11 0.00 39.21 6.13
435 436 3.399181 CCACTTAGGCTGGCCCGA 61.399 66.667 8.11 0.00 39.21 5.14
436 437 2.125106 CACTTAGGCTGGCCCGAC 60.125 66.667 8.11 0.00 39.21 4.79
437 438 3.400054 ACTTAGGCTGGCCCGACC 61.400 66.667 8.11 0.00 39.21 4.79
438 439 4.176752 CTTAGGCTGGCCCGACCC 62.177 72.222 8.11 0.00 39.21 4.46
439 440 4.733725 TTAGGCTGGCCCGACCCT 62.734 66.667 8.11 2.80 39.21 4.34
444 445 3.151022 CTGGCCCGACCCTCTCTC 61.151 72.222 0.00 0.00 37.83 3.20
445 446 4.779733 TGGCCCGACCCTCTCTCC 62.780 72.222 0.00 0.00 37.83 3.71
448 449 3.756783 CCCGACCCTCTCTCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
449 450 2.123640 CCGACCCTCTCTCCCCTC 60.124 72.222 0.00 0.00 0.00 4.30
450 451 2.123640 CGACCCTCTCTCCCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
451 452 2.284151 GACCCTCTCTCCCCTCCC 59.716 72.222 0.00 0.00 0.00 4.30
452 453 2.540910 ACCCTCTCTCCCCTCCCA 60.541 66.667 0.00 0.00 0.00 4.37
453 454 2.041405 CCCTCTCTCCCCTCCCAC 60.041 72.222 0.00 0.00 0.00 4.61
454 455 2.041405 CCTCTCTCCCCTCCCACC 60.041 72.222 0.00 0.00 0.00 4.61
455 456 2.041405 CTCTCTCCCCTCCCACCC 60.041 72.222 0.00 0.00 0.00 4.61
456 457 3.695825 TCTCTCCCCTCCCACCCC 61.696 72.222 0.00 0.00 0.00 4.95
457 458 4.024984 CTCTCCCCTCCCACCCCA 62.025 72.222 0.00 0.00 0.00 4.96
458 459 4.348495 TCTCCCCTCCCACCCCAC 62.348 72.222 0.00 0.00 0.00 4.61
467 468 4.596585 CCACCCCACCCCACACAC 62.597 72.222 0.00 0.00 0.00 3.82
468 469 4.596585 CACCCCACCCCACACACC 62.597 72.222 0.00 0.00 0.00 4.16
473 474 4.596585 CACCCCACACACCCCCAC 62.597 72.222 0.00 0.00 0.00 4.61
478 479 4.596585 CACACACCCCCACCCCAC 62.597 72.222 0.00 0.00 0.00 4.61
487 488 3.517497 CCACCCCACCCAACCCTT 61.517 66.667 0.00 0.00 0.00 3.95
488 489 2.164279 CCACCCCACCCAACCCTTA 61.164 63.158 0.00 0.00 0.00 2.69
489 490 1.382629 CACCCCACCCAACCCTTAG 59.617 63.158 0.00 0.00 0.00 2.18
490 491 1.137594 CACCCCACCCAACCCTTAGA 61.138 60.000 0.00 0.00 0.00 2.10
491 492 1.138228 ACCCCACCCAACCCTTAGAC 61.138 60.000 0.00 0.00 0.00 2.59
492 493 0.845102 CCCCACCCAACCCTTAGACT 60.845 60.000 0.00 0.00 0.00 3.24
493 494 1.073098 CCCACCCAACCCTTAGACTT 58.927 55.000 0.00 0.00 0.00 3.01
494 495 1.271926 CCCACCCAACCCTTAGACTTG 60.272 57.143 0.00 0.00 0.00 3.16
495 496 1.534729 CACCCAACCCTTAGACTTGC 58.465 55.000 0.00 0.00 0.00 4.01
496 497 0.036306 ACCCAACCCTTAGACTTGCG 59.964 55.000 0.00 0.00 0.00 4.85
497 498 1.305930 CCCAACCCTTAGACTTGCGC 61.306 60.000 0.00 0.00 0.00 6.09
498 499 1.305930 CCAACCCTTAGACTTGCGCC 61.306 60.000 4.18 0.00 0.00 6.53
499 500 1.002502 AACCCTTAGACTTGCGCCC 60.003 57.895 4.18 0.00 0.00 6.13
500 501 2.124695 CCCTTAGACTTGCGCCCC 60.125 66.667 4.18 0.00 0.00 5.80
501 502 2.670148 CCCTTAGACTTGCGCCCCT 61.670 63.158 4.18 0.00 0.00 4.79
502 503 1.153349 CCTTAGACTTGCGCCCCTC 60.153 63.158 4.18 0.00 0.00 4.30
503 504 1.153349 CTTAGACTTGCGCCCCTCC 60.153 63.158 4.18 0.00 0.00 4.30
504 505 1.612442 TTAGACTTGCGCCCCTCCT 60.612 57.895 4.18 0.00 0.00 3.69
505 506 1.614241 TTAGACTTGCGCCCCTCCTC 61.614 60.000 4.18 0.00 0.00 3.71
506 507 2.516048 TAGACTTGCGCCCCTCCTCT 62.516 60.000 4.18 0.00 0.00 3.69
507 508 3.378399 GACTTGCGCCCCTCCTCTC 62.378 68.421 4.18 0.00 0.00 3.20
508 509 3.080121 CTTGCGCCCCTCCTCTCT 61.080 66.667 4.18 0.00 0.00 3.10
509 510 2.607750 TTGCGCCCCTCCTCTCTT 60.608 61.111 4.18 0.00 0.00 2.85
510 511 2.585791 CTTGCGCCCCTCCTCTCTTC 62.586 65.000 4.18 0.00 0.00 2.87
511 512 3.855853 GCGCCCCTCCTCTCTTCC 61.856 72.222 0.00 0.00 0.00 3.46
512 513 3.157949 CGCCCCTCCTCTCTTCCC 61.158 72.222 0.00 0.00 0.00 3.97
513 514 2.770475 GCCCCTCCTCTCTTCCCC 60.770 72.222 0.00 0.00 0.00 4.81
514 515 3.124088 CCCCTCCTCTCTTCCCCT 58.876 66.667 0.00 0.00 0.00 4.79
515 516 1.074850 CCCCTCCTCTCTTCCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
516 517 1.598856 CCCCTCCTCTCTTCCCCTCT 61.599 65.000 0.00 0.00 0.00 3.69
517 518 0.105709 CCCTCCTCTCTTCCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
518 519 0.105709 CCTCCTCTCTTCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
519 520 0.105709 CTCCTCTCTTCCCCTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
520 521 1.074850 CCTCTCTTCCCCTCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
521 522 1.074850 CTCTCTTCCCCTCTCCCCC 60.075 68.421 0.00 0.00 0.00 5.40
538 539 2.200081 CCCCCTCTCAAATCCTTCTCA 58.800 52.381 0.00 0.00 0.00 3.27
539 540 2.578021 CCCCCTCTCAAATCCTTCTCAA 59.422 50.000 0.00 0.00 0.00 3.02
540 541 3.010584 CCCCCTCTCAAATCCTTCTCAAA 59.989 47.826 0.00 0.00 0.00 2.69
541 542 4.325658 CCCCCTCTCAAATCCTTCTCAAAT 60.326 45.833 0.00 0.00 0.00 2.32
542 543 4.886489 CCCCTCTCAAATCCTTCTCAAATC 59.114 45.833 0.00 0.00 0.00 2.17
543 544 5.339861 CCCCTCTCAAATCCTTCTCAAATCT 60.340 44.000 0.00 0.00 0.00 2.40
544 545 6.186234 CCCTCTCAAATCCTTCTCAAATCTT 58.814 40.000 0.00 0.00 0.00 2.40
545 546 6.095160 CCCTCTCAAATCCTTCTCAAATCTTG 59.905 42.308 0.00 0.00 0.00 3.02
546 547 6.404513 CCTCTCAAATCCTTCTCAAATCTTGC 60.405 42.308 0.00 0.00 0.00 4.01
547 548 6.005823 TCTCAAATCCTTCTCAAATCTTGCA 58.994 36.000 0.00 0.00 0.00 4.08
548 549 6.491062 TCTCAAATCCTTCTCAAATCTTGCAA 59.509 34.615 0.00 0.00 0.00 4.08
549 550 7.014518 TCTCAAATCCTTCTCAAATCTTGCAAA 59.985 33.333 0.00 0.00 0.00 3.68
550 551 7.673180 TCAAATCCTTCTCAAATCTTGCAAAT 58.327 30.769 0.00 0.00 0.00 2.32
551 552 7.816031 TCAAATCCTTCTCAAATCTTGCAAATC 59.184 33.333 0.00 0.00 0.00 2.17
552 553 5.649782 TCCTTCTCAAATCTTGCAAATCC 57.350 39.130 0.00 0.00 0.00 3.01
553 554 4.156556 TCCTTCTCAAATCTTGCAAATCCG 59.843 41.667 0.00 0.00 0.00 4.18
554 555 4.418392 CTTCTCAAATCTTGCAAATCCGG 58.582 43.478 0.00 0.00 0.00 5.14
555 556 3.684908 TCTCAAATCTTGCAAATCCGGA 58.315 40.909 6.61 6.61 0.00 5.14
556 557 3.691118 TCTCAAATCTTGCAAATCCGGAG 59.309 43.478 11.34 5.73 0.00 4.63
557 558 3.420893 TCAAATCTTGCAAATCCGGAGT 58.579 40.909 11.34 3.58 0.00 3.85
558 559 4.584874 TCAAATCTTGCAAATCCGGAGTA 58.415 39.130 11.34 0.00 0.00 2.59
559 560 5.192927 TCAAATCTTGCAAATCCGGAGTAT 58.807 37.500 11.34 0.00 0.00 2.12
560 561 5.652014 TCAAATCTTGCAAATCCGGAGTATT 59.348 36.000 11.34 1.75 0.00 1.89
561 562 6.152661 TCAAATCTTGCAAATCCGGAGTATTT 59.847 34.615 11.34 6.27 0.00 1.40
562 563 4.963276 TCTTGCAAATCCGGAGTATTTG 57.037 40.909 20.06 20.06 44.90 2.32
563 564 4.584874 TCTTGCAAATCCGGAGTATTTGA 58.415 39.130 25.96 12.61 44.90 2.69
564 565 4.394920 TCTTGCAAATCCGGAGTATTTGAC 59.605 41.667 25.96 18.63 44.90 3.18
565 566 3.013921 TGCAAATCCGGAGTATTTGACC 58.986 45.455 25.96 13.64 44.90 4.02
566 567 3.013921 GCAAATCCGGAGTATTTGACCA 58.986 45.455 25.96 0.00 44.90 4.02
567 568 3.632145 GCAAATCCGGAGTATTTGACCAT 59.368 43.478 25.96 0.00 44.90 3.55
568 569 4.498009 GCAAATCCGGAGTATTTGACCATG 60.498 45.833 25.96 10.80 44.90 3.66
569 570 3.492102 ATCCGGAGTATTTGACCATGG 57.508 47.619 11.34 11.19 0.00 3.66
570 571 2.473070 TCCGGAGTATTTGACCATGGA 58.527 47.619 21.47 0.00 0.00 3.41
571 572 3.045634 TCCGGAGTATTTGACCATGGAT 58.954 45.455 21.47 3.47 0.00 3.41
572 573 3.458118 TCCGGAGTATTTGACCATGGATT 59.542 43.478 21.47 0.00 0.00 3.01
573 574 4.080015 TCCGGAGTATTTGACCATGGATTT 60.080 41.667 21.47 0.00 0.00 2.17
574 575 4.275936 CCGGAGTATTTGACCATGGATTTC 59.724 45.833 21.47 6.29 0.00 2.17
575 576 4.024893 CGGAGTATTTGACCATGGATTTCG 60.025 45.833 21.47 0.00 0.00 3.46
576 577 5.123227 GGAGTATTTGACCATGGATTTCGA 58.877 41.667 21.47 2.21 0.00 3.71
577 578 5.588648 GGAGTATTTGACCATGGATTTCGAA 59.411 40.000 21.47 12.27 0.00 3.71
578 579 6.238484 GGAGTATTTGACCATGGATTTCGAAG 60.238 42.308 21.47 0.00 0.00 3.79
579 580 3.848272 TTTGACCATGGATTTCGAAGC 57.152 42.857 21.47 0.00 0.00 3.86
580 581 1.750193 TGACCATGGATTTCGAAGCC 58.250 50.000 21.47 11.10 37.50 4.35
1056 1058 2.224744 TGCTAACCAAGAAGACATGCCA 60.225 45.455 0.00 0.00 0.00 4.92
1218 1220 2.833794 TGCCCGAACTATGCTTATGAC 58.166 47.619 0.00 0.00 0.00 3.06
1219 1221 2.434336 TGCCCGAACTATGCTTATGACT 59.566 45.455 0.00 0.00 0.00 3.41
1333 1336 4.459089 GCAGTCACCGCCTCCTCC 62.459 72.222 0.00 0.00 0.00 4.30
1386 1389 4.464008 AGTGCCAGAAGATGTCAAAAAGA 58.536 39.130 0.00 0.00 0.00 2.52
1448 1451 6.410243 GAAGAATCGTTTCGAAGAGGATTT 57.590 37.500 19.50 11.25 39.99 2.17
1543 1546 1.304952 CTCGTGAGGAGGAGAGGGT 59.695 63.158 0.00 0.00 39.22 4.34
1563 1566 3.243873 GGTAAGAAAGCTTGCAAAGGCTT 60.244 43.478 17.56 17.56 46.35 4.35
1855 1861 0.535553 TGCTGTGATGCTGCAGTCAA 60.536 50.000 16.64 1.65 45.14 3.18
1950 1956 3.279116 GAACACAGGCGCTGCACA 61.279 61.111 7.64 0.00 34.37 4.57
2192 2204 4.789075 GCTGTTGGGCGCTGCATG 62.789 66.667 7.64 0.00 0.00 4.06
2193 2205 3.367743 CTGTTGGGCGCTGCATGT 61.368 61.111 7.64 0.00 0.00 3.21
2195 2207 2.431260 GTTGGGCGCTGCATGTTG 60.431 61.111 7.64 0.00 0.00 3.33
2197 2209 4.657408 TGGGCGCTGCATGTTGGA 62.657 61.111 7.64 0.00 0.00 3.53
2198 2210 3.372730 GGGCGCTGCATGTTGGAA 61.373 61.111 7.64 0.00 0.00 3.53
2199 2211 2.650196 GGCGCTGCATGTTGGAAA 59.350 55.556 7.64 0.00 0.00 3.13
2200 2212 1.216178 GGCGCTGCATGTTGGAAAT 59.784 52.632 7.64 0.00 0.00 2.17
2201 2213 0.455410 GGCGCTGCATGTTGGAAATA 59.545 50.000 7.64 0.00 0.00 1.40
2202 2214 1.067516 GGCGCTGCATGTTGGAAATAT 59.932 47.619 7.64 0.00 0.00 1.28
2203 2215 2.293122 GGCGCTGCATGTTGGAAATATA 59.707 45.455 7.64 0.00 0.00 0.86
2204 2216 3.300009 GCGCTGCATGTTGGAAATATAC 58.700 45.455 0.00 0.00 0.00 1.47
2205 2217 3.853307 GCGCTGCATGTTGGAAATATACC 60.853 47.826 0.00 0.00 0.00 2.73
2206 2218 3.304659 CGCTGCATGTTGGAAATATACCC 60.305 47.826 0.00 0.00 0.00 3.69
2207 2219 3.304659 GCTGCATGTTGGAAATATACCCG 60.305 47.826 0.00 0.00 0.00 5.28
2208 2220 4.133820 CTGCATGTTGGAAATATACCCGA 58.866 43.478 0.00 0.00 0.00 5.14
2209 2221 4.133820 TGCATGTTGGAAATATACCCGAG 58.866 43.478 0.00 0.00 0.00 4.63
2210 2222 4.141597 TGCATGTTGGAAATATACCCGAGA 60.142 41.667 0.00 0.00 0.00 4.04
2211 2223 4.452455 GCATGTTGGAAATATACCCGAGAG 59.548 45.833 0.00 0.00 0.00 3.20
2266 2278 9.685276 TCCTTGTTCATGATAATTGTCTATTGT 57.315 29.630 0.00 0.00 0.00 2.71
2272 2284 9.955208 TTCATGATAATTGTCTATTGTTCATGC 57.045 29.630 18.84 0.00 41.74 4.06
2273 2285 9.346005 TCATGATAATTGTCTATTGTTCATGCT 57.654 29.630 18.84 0.00 41.74 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.299141 TCCTTCACTTCCATATGATTAAGGC 58.701 40.000 3.65 0.00 0.00 4.35
1 2 6.939163 CCTCCTTCACTTCCATATGATTAAGG 59.061 42.308 3.65 8.25 0.00 2.69
2 3 6.939163 CCCTCCTTCACTTCCATATGATTAAG 59.061 42.308 3.65 7.48 0.00 1.85
3 4 6.619437 TCCCTCCTTCACTTCCATATGATTAA 59.381 38.462 3.65 0.00 0.00 1.40
4 5 6.150332 TCCCTCCTTCACTTCCATATGATTA 58.850 40.000 3.65 0.00 0.00 1.75
5 6 4.977739 TCCCTCCTTCACTTCCATATGATT 59.022 41.667 3.65 0.00 0.00 2.57
6 7 4.570926 TCCCTCCTTCACTTCCATATGAT 58.429 43.478 3.65 0.00 0.00 2.45
7 8 4.007581 TCCCTCCTTCACTTCCATATGA 57.992 45.455 3.65 0.00 0.00 2.15
8 9 4.164988 ACTTCCCTCCTTCACTTCCATATG 59.835 45.833 0.00 0.00 0.00 1.78
9 10 4.375313 ACTTCCCTCCTTCACTTCCATAT 58.625 43.478 0.00 0.00 0.00 1.78
10 11 3.803340 ACTTCCCTCCTTCACTTCCATA 58.197 45.455 0.00 0.00 0.00 2.74
11 12 2.637165 ACTTCCCTCCTTCACTTCCAT 58.363 47.619 0.00 0.00 0.00 3.41
12 13 2.118403 ACTTCCCTCCTTCACTTCCA 57.882 50.000 0.00 0.00 0.00 3.53
13 14 3.055021 CCTAACTTCCCTCCTTCACTTCC 60.055 52.174 0.00 0.00 0.00 3.46
14 15 3.055021 CCCTAACTTCCCTCCTTCACTTC 60.055 52.174 0.00 0.00 0.00 3.01
15 16 2.913617 CCCTAACTTCCCTCCTTCACTT 59.086 50.000 0.00 0.00 0.00 3.16
16 17 2.113777 TCCCTAACTTCCCTCCTTCACT 59.886 50.000 0.00 0.00 0.00 3.41
17 18 2.547990 TCCCTAACTTCCCTCCTTCAC 58.452 52.381 0.00 0.00 0.00 3.18
18 19 3.182152 CTTCCCTAACTTCCCTCCTTCA 58.818 50.000 0.00 0.00 0.00 3.02
19 20 3.055021 CACTTCCCTAACTTCCCTCCTTC 60.055 52.174 0.00 0.00 0.00 3.46
20 21 2.913617 CACTTCCCTAACTTCCCTCCTT 59.086 50.000 0.00 0.00 0.00 3.36
21 22 2.157989 ACACTTCCCTAACTTCCCTCCT 60.158 50.000 0.00 0.00 0.00 3.69
22 23 2.267192 ACACTTCCCTAACTTCCCTCC 58.733 52.381 0.00 0.00 0.00 4.30
23 24 3.118702 GCTACACTTCCCTAACTTCCCTC 60.119 52.174 0.00 0.00 0.00 4.30
24 25 2.838813 GCTACACTTCCCTAACTTCCCT 59.161 50.000 0.00 0.00 0.00 4.20
25 26 2.838813 AGCTACACTTCCCTAACTTCCC 59.161 50.000 0.00 0.00 0.00 3.97
26 27 4.554960 AAGCTACACTTCCCTAACTTCC 57.445 45.455 0.00 0.00 30.77 3.46
27 28 5.187381 ACCTAAGCTACACTTCCCTAACTTC 59.813 44.000 0.00 0.00 39.97 3.01
28 29 5.046520 CACCTAAGCTACACTTCCCTAACTT 60.047 44.000 0.00 0.00 39.97 2.66
29 30 4.466726 CACCTAAGCTACACTTCCCTAACT 59.533 45.833 0.00 0.00 39.97 2.24
30 31 4.465305 TCACCTAAGCTACACTTCCCTAAC 59.535 45.833 0.00 0.00 39.97 2.34
31 32 4.465305 GTCACCTAAGCTACACTTCCCTAA 59.535 45.833 0.00 0.00 39.97 2.69
32 33 4.021916 GTCACCTAAGCTACACTTCCCTA 58.978 47.826 0.00 0.00 39.97 3.53
33 34 2.832733 GTCACCTAAGCTACACTTCCCT 59.167 50.000 0.00 0.00 39.97 4.20
34 35 2.832733 AGTCACCTAAGCTACACTTCCC 59.167 50.000 0.00 0.00 39.97 3.97
35 36 4.538746 AAGTCACCTAAGCTACACTTCC 57.461 45.455 0.00 0.00 39.97 3.46
36 37 4.930405 GGAAAGTCACCTAAGCTACACTTC 59.070 45.833 0.00 0.00 39.97 3.01
37 38 4.593634 AGGAAAGTCACCTAAGCTACACTT 59.406 41.667 0.00 0.00 42.76 3.16
38 39 4.161102 AGGAAAGTCACCTAAGCTACACT 58.839 43.478 0.00 0.00 35.84 3.55
39 40 4.496360 GAGGAAAGTCACCTAAGCTACAC 58.504 47.826 0.00 0.00 37.93 2.90
40 41 3.514309 GGAGGAAAGTCACCTAAGCTACA 59.486 47.826 0.00 0.00 37.93 2.74
41 42 3.770388 AGGAGGAAAGTCACCTAAGCTAC 59.230 47.826 0.00 0.00 37.93 3.58
42 43 4.062490 AGGAGGAAAGTCACCTAAGCTA 57.938 45.455 0.00 0.00 37.93 3.32
43 44 2.909217 AGGAGGAAAGTCACCTAAGCT 58.091 47.619 0.00 0.00 37.93 3.74
44 45 3.008049 TGAAGGAGGAAAGTCACCTAAGC 59.992 47.826 0.00 0.00 37.93 3.09
45 46 4.570930 GTGAAGGAGGAAAGTCACCTAAG 58.429 47.826 0.00 0.00 37.93 2.18
46 47 3.006537 CGTGAAGGAGGAAAGTCACCTAA 59.993 47.826 0.00 0.00 37.66 2.69
47 48 2.561419 CGTGAAGGAGGAAAGTCACCTA 59.439 50.000 0.00 0.00 37.66 3.08
48 49 1.344763 CGTGAAGGAGGAAAGTCACCT 59.655 52.381 0.00 0.00 37.66 4.00
49 50 1.070289 ACGTGAAGGAGGAAAGTCACC 59.930 52.381 0.00 0.00 37.66 4.02
50 51 2.528041 ACGTGAAGGAGGAAAGTCAC 57.472 50.000 0.00 0.00 37.59 3.67
51 52 3.893200 TCTAACGTGAAGGAGGAAAGTCA 59.107 43.478 0.00 0.00 0.00 3.41
52 53 4.516365 TCTAACGTGAAGGAGGAAAGTC 57.484 45.455 0.00 0.00 0.00 3.01
53 54 4.283722 ACATCTAACGTGAAGGAGGAAAGT 59.716 41.667 0.00 0.00 0.00 2.66
54 55 4.822026 ACATCTAACGTGAAGGAGGAAAG 58.178 43.478 0.00 0.00 0.00 2.62
55 56 4.884668 ACATCTAACGTGAAGGAGGAAA 57.115 40.909 0.00 0.00 0.00 3.13
56 57 4.884668 AACATCTAACGTGAAGGAGGAA 57.115 40.909 0.00 0.00 0.00 3.36
57 58 5.258841 TCTAACATCTAACGTGAAGGAGGA 58.741 41.667 0.00 0.00 0.00 3.71
58 59 5.450688 CCTCTAACATCTAACGTGAAGGAGG 60.451 48.000 0.00 0.00 0.00 4.30
59 60 5.357314 TCCTCTAACATCTAACGTGAAGGAG 59.643 44.000 0.00 0.00 0.00 3.69
60 61 5.258841 TCCTCTAACATCTAACGTGAAGGA 58.741 41.667 0.00 0.00 0.00 3.36
61 62 5.578005 TCCTCTAACATCTAACGTGAAGG 57.422 43.478 0.00 0.00 0.00 3.46
62 63 6.183360 TGGATCCTCTAACATCTAACGTGAAG 60.183 42.308 14.23 0.00 0.00 3.02
63 64 5.655090 TGGATCCTCTAACATCTAACGTGAA 59.345 40.000 14.23 0.00 0.00 3.18
64 65 5.067413 GTGGATCCTCTAACATCTAACGTGA 59.933 44.000 14.23 0.00 0.00 4.35
65 66 5.067936 AGTGGATCCTCTAACATCTAACGTG 59.932 44.000 14.73 0.00 0.00 4.49
66 67 5.202004 AGTGGATCCTCTAACATCTAACGT 58.798 41.667 14.73 0.00 0.00 3.99
67 68 5.776173 AGTGGATCCTCTAACATCTAACG 57.224 43.478 14.73 0.00 0.00 3.18
68 69 6.294065 CGGTAGTGGATCCTCTAACATCTAAC 60.294 46.154 29.37 16.38 31.41 2.34
69 70 5.768662 CGGTAGTGGATCCTCTAACATCTAA 59.231 44.000 29.37 7.04 31.41 2.10
70 71 5.314529 CGGTAGTGGATCCTCTAACATCTA 58.685 45.833 29.37 7.68 31.41 1.98
71 72 4.145807 CGGTAGTGGATCCTCTAACATCT 58.854 47.826 29.37 11.78 31.41 2.90
72 73 3.256136 CCGGTAGTGGATCCTCTAACATC 59.744 52.174 29.37 16.31 31.41 3.06
73 74 3.231818 CCGGTAGTGGATCCTCTAACAT 58.768 50.000 29.37 8.34 31.41 2.71
74 75 2.662866 CCGGTAGTGGATCCTCTAACA 58.337 52.381 29.37 9.60 31.41 2.41
75 76 1.340568 GCCGGTAGTGGATCCTCTAAC 59.659 57.143 23.51 23.51 0.00 2.34
76 77 1.063492 TGCCGGTAGTGGATCCTCTAA 60.063 52.381 22.11 6.60 0.00 2.10
77 78 0.554305 TGCCGGTAGTGGATCCTCTA 59.446 55.000 17.71 17.71 0.00 2.43
78 79 0.757188 CTGCCGGTAGTGGATCCTCT 60.757 60.000 19.73 19.73 0.00 3.69
79 80 1.742768 CTGCCGGTAGTGGATCCTC 59.257 63.158 14.23 9.81 0.00 3.71
80 81 2.435693 GCTGCCGGTAGTGGATCCT 61.436 63.158 21.31 0.00 0.00 3.24
81 82 2.109181 GCTGCCGGTAGTGGATCC 59.891 66.667 21.31 4.20 0.00 3.36
82 83 2.109181 GGCTGCCGGTAGTGGATC 59.891 66.667 21.31 3.45 0.00 3.36
83 84 2.687200 TGGCTGCCGGTAGTGGAT 60.687 61.111 21.31 0.00 0.00 3.41
84 85 3.702048 GTGGCTGCCGGTAGTGGA 61.702 66.667 21.31 2.33 0.00 4.02
85 86 3.329542 ATGTGGCTGCCGGTAGTGG 62.330 63.158 21.31 0.00 0.00 4.00
86 87 2.108514 CATGTGGCTGCCGGTAGTG 61.109 63.158 21.31 7.06 0.00 2.74
87 88 2.268920 CATGTGGCTGCCGGTAGT 59.731 61.111 21.31 0.00 0.00 2.73
88 89 1.815421 GTCATGTGGCTGCCGGTAG 60.815 63.158 16.18 16.18 0.00 3.18
89 90 2.267642 GTCATGTGGCTGCCGGTA 59.732 61.111 14.98 0.00 0.00 4.02
90 91 4.722700 GGTCATGTGGCTGCCGGT 62.723 66.667 14.98 0.00 0.00 5.28
92 93 4.758251 TCGGTCATGTGGCTGCCG 62.758 66.667 14.98 0.00 43.32 5.69
93 94 2.359850 TTCGGTCATGTGGCTGCC 60.360 61.111 12.87 12.87 0.00 4.85
94 95 0.391130 TAGTTCGGTCATGTGGCTGC 60.391 55.000 0.00 0.00 0.00 5.25
95 96 1.359848 GTAGTTCGGTCATGTGGCTG 58.640 55.000 0.00 0.00 0.00 4.85
96 97 0.249398 GGTAGTTCGGTCATGTGGCT 59.751 55.000 0.00 0.00 0.00 4.75
97 98 1.082117 CGGTAGTTCGGTCATGTGGC 61.082 60.000 0.00 0.00 0.00 5.01
98 99 1.082117 GCGGTAGTTCGGTCATGTGG 61.082 60.000 0.00 0.00 0.00 4.17
99 100 1.410737 CGCGGTAGTTCGGTCATGTG 61.411 60.000 0.00 0.00 0.00 3.21
100 101 1.153901 CGCGGTAGTTCGGTCATGT 60.154 57.895 0.00 0.00 0.00 3.21
101 102 1.876714 CCGCGGTAGTTCGGTCATG 60.877 63.158 19.50 0.00 40.72 3.07
102 103 2.493030 CCGCGGTAGTTCGGTCAT 59.507 61.111 19.50 0.00 40.72 3.06
103 104 4.424566 GCCGCGGTAGTTCGGTCA 62.425 66.667 28.70 0.00 46.79 4.02
126 127 2.707849 CCAGCATTGGTGGCTCTGC 61.708 63.158 21.05 0.00 44.28 4.26
127 128 3.599584 CCAGCATTGGTGGCTCTG 58.400 61.111 21.05 1.17 44.28 3.35
136 137 9.223099 TCAAATATGTGATATCTACCAGCATTG 57.777 33.333 3.98 5.45 0.00 2.82
137 138 9.224267 GTCAAATATGTGATATCTACCAGCATT 57.776 33.333 3.98 0.96 0.00 3.56
138 139 7.826252 GGTCAAATATGTGATATCTACCAGCAT 59.174 37.037 3.98 2.46 0.00 3.79
139 140 7.016563 AGGTCAAATATGTGATATCTACCAGCA 59.983 37.037 3.98 0.00 0.00 4.41
140 141 7.332926 CAGGTCAAATATGTGATATCTACCAGC 59.667 40.741 3.98 0.00 0.00 4.85
141 142 8.588472 TCAGGTCAAATATGTGATATCTACCAG 58.412 37.037 3.98 0.00 0.00 4.00
142 143 8.491045 TCAGGTCAAATATGTGATATCTACCA 57.509 34.615 3.98 0.00 0.00 3.25
143 144 8.037758 CCTCAGGTCAAATATGTGATATCTACC 58.962 40.741 3.98 0.00 0.00 3.18
144 145 8.037758 CCCTCAGGTCAAATATGTGATATCTAC 58.962 40.741 3.98 1.68 0.00 2.59
145 146 7.310671 GCCCTCAGGTCAAATATGTGATATCTA 60.311 40.741 3.98 0.00 34.57 1.98
146 147 6.521427 GCCCTCAGGTCAAATATGTGATATCT 60.521 42.308 3.98 0.00 34.57 1.98
147 148 5.645497 GCCCTCAGGTCAAATATGTGATATC 59.355 44.000 0.00 0.00 34.57 1.63
148 149 5.564550 GCCCTCAGGTCAAATATGTGATAT 58.435 41.667 0.00 0.00 34.57 1.63
149 150 4.503123 CGCCCTCAGGTCAAATATGTGATA 60.503 45.833 0.00 0.00 34.57 2.15
150 151 3.745480 CGCCCTCAGGTCAAATATGTGAT 60.745 47.826 0.00 0.00 34.57 3.06
151 152 2.419990 CGCCCTCAGGTCAAATATGTGA 60.420 50.000 0.00 0.00 34.57 3.58
152 153 1.942657 CGCCCTCAGGTCAAATATGTG 59.057 52.381 0.00 0.00 34.57 3.21
153 154 1.837439 TCGCCCTCAGGTCAAATATGT 59.163 47.619 0.00 0.00 34.57 2.29
154 155 2.620251 TCGCCCTCAGGTCAAATATG 57.380 50.000 0.00 0.00 34.57 1.78
155 156 3.644966 TTTCGCCCTCAGGTCAAATAT 57.355 42.857 0.00 0.00 34.57 1.28
156 157 3.054728 TGATTTCGCCCTCAGGTCAAATA 60.055 43.478 0.00 0.00 34.57 1.40
157 158 2.290896 TGATTTCGCCCTCAGGTCAAAT 60.291 45.455 0.00 0.00 34.57 2.32
158 159 1.073125 TGATTTCGCCCTCAGGTCAAA 59.927 47.619 0.00 0.00 34.57 2.69
159 160 0.690192 TGATTTCGCCCTCAGGTCAA 59.310 50.000 0.00 0.00 34.57 3.18
160 161 0.690192 TTGATTTCGCCCTCAGGTCA 59.310 50.000 0.00 0.00 34.57 4.02
161 162 1.821216 TTTGATTTCGCCCTCAGGTC 58.179 50.000 0.00 0.00 34.57 3.85
162 163 2.290896 TGATTTGATTTCGCCCTCAGGT 60.291 45.455 0.00 0.00 34.57 4.00
163 164 2.368439 TGATTTGATTTCGCCCTCAGG 58.632 47.619 0.00 0.00 0.00 3.86
164 165 5.756195 TTATGATTTGATTTCGCCCTCAG 57.244 39.130 0.00 0.00 0.00 3.35
165 166 5.652014 AGTTTATGATTTGATTTCGCCCTCA 59.348 36.000 0.00 0.00 0.00 3.86
166 167 5.973565 CAGTTTATGATTTGATTTCGCCCTC 59.026 40.000 0.00 0.00 0.00 4.30
167 168 5.652014 TCAGTTTATGATTTGATTTCGCCCT 59.348 36.000 0.00 0.00 31.12 5.19
168 169 5.743872 GTCAGTTTATGATTTGATTTCGCCC 59.256 40.000 0.00 0.00 40.92 6.13
169 170 5.743872 GGTCAGTTTATGATTTGATTTCGCC 59.256 40.000 0.00 0.00 40.92 5.54
170 171 6.470235 CAGGTCAGTTTATGATTTGATTTCGC 59.530 38.462 0.00 0.00 40.92 4.70
171 172 6.470235 GCAGGTCAGTTTATGATTTGATTTCG 59.530 38.462 0.00 0.00 40.92 3.46
172 173 7.542025 AGCAGGTCAGTTTATGATTTGATTTC 58.458 34.615 0.00 0.00 40.92 2.17
173 174 7.472334 AGCAGGTCAGTTTATGATTTGATTT 57.528 32.000 0.00 0.00 40.92 2.17
174 175 7.472334 AAGCAGGTCAGTTTATGATTTGATT 57.528 32.000 0.00 0.00 40.92 2.57
175 176 7.472334 AAAGCAGGTCAGTTTATGATTTGAT 57.528 32.000 0.00 0.00 40.92 2.57
176 177 6.348458 CGAAAGCAGGTCAGTTTATGATTTGA 60.348 38.462 0.00 0.00 40.92 2.69
177 178 5.796935 CGAAAGCAGGTCAGTTTATGATTTG 59.203 40.000 0.00 0.00 40.92 2.32
178 179 5.705441 TCGAAAGCAGGTCAGTTTATGATTT 59.295 36.000 0.00 0.00 40.92 2.17
179 180 5.122396 GTCGAAAGCAGGTCAGTTTATGATT 59.878 40.000 0.00 0.00 40.92 2.57
180 181 4.631813 GTCGAAAGCAGGTCAGTTTATGAT 59.368 41.667 0.00 0.00 40.92 2.45
181 182 3.994392 GTCGAAAGCAGGTCAGTTTATGA 59.006 43.478 0.00 0.00 34.79 2.15
182 183 3.745975 TGTCGAAAGCAGGTCAGTTTATG 59.254 43.478 0.00 0.00 0.00 1.90
183 184 4.002906 TGTCGAAAGCAGGTCAGTTTAT 57.997 40.909 0.00 0.00 0.00 1.40
184 185 3.462483 TGTCGAAAGCAGGTCAGTTTA 57.538 42.857 0.00 0.00 0.00 2.01
185 186 2.325583 TGTCGAAAGCAGGTCAGTTT 57.674 45.000 0.00 0.00 0.00 2.66
186 187 2.325583 TTGTCGAAAGCAGGTCAGTT 57.674 45.000 0.00 0.00 0.00 3.16
187 188 2.325583 TTTGTCGAAAGCAGGTCAGT 57.674 45.000 0.00 0.00 0.00 3.41
188 189 3.904136 ATTTTGTCGAAAGCAGGTCAG 57.096 42.857 0.00 0.00 0.00 3.51
189 190 4.097135 TGAAATTTTGTCGAAAGCAGGTCA 59.903 37.500 0.00 0.00 0.00 4.02
190 191 4.441087 GTGAAATTTTGTCGAAAGCAGGTC 59.559 41.667 0.00 0.00 0.00 3.85
191 192 4.097892 AGTGAAATTTTGTCGAAAGCAGGT 59.902 37.500 0.00 0.00 0.00 4.00
192 193 4.610945 AGTGAAATTTTGTCGAAAGCAGG 58.389 39.130 0.00 0.00 0.00 4.85
193 194 4.376861 CGAGTGAAATTTTGTCGAAAGCAG 59.623 41.667 10.58 0.00 32.32 4.24
194 195 4.278858 CGAGTGAAATTTTGTCGAAAGCA 58.721 39.130 10.58 0.00 32.32 3.91
195 196 3.664025 CCGAGTGAAATTTTGTCGAAAGC 59.336 43.478 15.41 0.00 32.32 3.51
196 197 3.664025 GCCGAGTGAAATTTTGTCGAAAG 59.336 43.478 15.41 4.68 32.32 2.62
197 198 3.314080 AGCCGAGTGAAATTTTGTCGAAA 59.686 39.130 15.41 0.00 32.32 3.46
198 199 2.875933 AGCCGAGTGAAATTTTGTCGAA 59.124 40.909 15.41 0.00 32.32 3.71
199 200 2.223144 CAGCCGAGTGAAATTTTGTCGA 59.777 45.455 15.41 0.00 32.32 4.20
200 201 2.223144 TCAGCCGAGTGAAATTTTGTCG 59.777 45.455 9.57 9.57 0.00 4.35
201 202 3.555518 GTCAGCCGAGTGAAATTTTGTC 58.444 45.455 0.00 0.00 0.00 3.18
202 203 2.293399 GGTCAGCCGAGTGAAATTTTGT 59.707 45.455 0.00 0.00 0.00 2.83
203 204 2.351738 GGGTCAGCCGAGTGAAATTTTG 60.352 50.000 0.00 0.00 34.97 2.44
204 205 1.886542 GGGTCAGCCGAGTGAAATTTT 59.113 47.619 0.00 0.00 34.97 1.82
205 206 1.073923 AGGGTCAGCCGAGTGAAATTT 59.926 47.619 0.00 0.00 34.97 1.82
206 207 0.693049 AGGGTCAGCCGAGTGAAATT 59.307 50.000 0.00 0.00 34.97 1.82
207 208 0.693049 AAGGGTCAGCCGAGTGAAAT 59.307 50.000 0.00 0.00 34.97 2.17
208 209 0.472471 AAAGGGTCAGCCGAGTGAAA 59.528 50.000 0.00 0.00 34.97 2.69
209 210 0.034896 GAAAGGGTCAGCCGAGTGAA 59.965 55.000 0.00 0.00 34.97 3.18
210 211 1.671742 GAAAGGGTCAGCCGAGTGA 59.328 57.895 0.00 0.00 34.97 3.41
211 212 1.738099 CGAAAGGGTCAGCCGAGTG 60.738 63.158 0.00 0.00 34.97 3.51
212 213 2.207924 ACGAAAGGGTCAGCCGAGT 61.208 57.895 0.00 0.00 34.97 4.18
213 214 1.738099 CACGAAAGGGTCAGCCGAG 60.738 63.158 0.00 0.00 34.97 4.63
214 215 2.342279 CACGAAAGGGTCAGCCGA 59.658 61.111 0.00 0.00 34.97 5.54
245 246 1.721664 TAGTAGTGTGCGGCGCCTAG 61.722 60.000 30.82 11.41 0.00 3.02
246 247 1.105167 ATAGTAGTGTGCGGCGCCTA 61.105 55.000 30.82 21.26 0.00 3.93
247 248 2.423898 ATAGTAGTGTGCGGCGCCT 61.424 57.895 30.82 21.24 0.00 5.52
248 249 2.106332 ATAGTAGTGTGCGGCGCC 59.894 61.111 30.82 19.07 0.00 6.53
249 250 2.871427 GCATAGTAGTGTGCGGCGC 61.871 63.158 27.44 27.44 30.39 6.53
250 251 1.482621 CTGCATAGTAGTGTGCGGCG 61.483 60.000 14.32 0.51 43.50 6.46
251 252 2.301505 CTGCATAGTAGTGTGCGGC 58.698 57.895 14.32 0.00 43.50 6.53
253 254 1.920051 CGCTGCATAGTAGTGTGCG 59.080 57.895 13.78 9.89 43.50 5.34
254 255 1.638467 GCGCTGCATAGTAGTGTGC 59.362 57.895 12.04 12.04 41.06 4.57
255 256 0.179100 AGGCGCTGCATAGTAGTGTG 60.179 55.000 7.64 0.00 0.00 3.82
256 257 0.103208 GAGGCGCTGCATAGTAGTGT 59.897 55.000 7.64 0.00 0.00 3.55
257 258 0.387202 AGAGGCGCTGCATAGTAGTG 59.613 55.000 7.64 0.00 0.00 2.74
258 259 0.387202 CAGAGGCGCTGCATAGTAGT 59.613 55.000 7.64 0.00 37.90 2.73
259 260 3.191903 CAGAGGCGCTGCATAGTAG 57.808 57.895 7.64 0.00 37.90 2.57
277 278 4.452733 AGGTGCGACGCCTAAGGC 62.453 66.667 18.69 0.00 43.18 4.35
278 279 2.202756 GAGGTGCGACGCCTAAGG 60.203 66.667 18.69 0.00 45.19 2.69
279 280 2.202756 GGAGGTGCGACGCCTAAG 60.203 66.667 18.69 0.00 45.19 2.18
280 281 2.678934 AGGAGGTGCGACGCCTAA 60.679 61.111 18.69 0.00 45.19 2.69
281 282 3.449227 CAGGAGGTGCGACGCCTA 61.449 66.667 18.69 0.00 45.19 3.93
300 301 4.694233 ACCAGAGCTGCCACGCTG 62.694 66.667 0.00 0.00 41.08 5.18
301 302 4.385405 GACCAGAGCTGCCACGCT 62.385 66.667 0.00 0.00 44.33 5.07
303 304 3.947132 CTGGACCAGAGCTGCCACG 62.947 68.421 17.22 0.00 32.44 4.94
304 305 2.046507 CTGGACCAGAGCTGCCAC 60.047 66.667 17.22 0.00 32.44 5.01
305 306 2.149383 AACTGGACCAGAGCTGCCA 61.149 57.895 28.56 0.00 35.18 4.92
306 307 1.673665 CAACTGGACCAGAGCTGCC 60.674 63.158 28.56 0.00 35.18 4.85
307 308 2.331132 GCAACTGGACCAGAGCTGC 61.331 63.158 28.56 25.08 34.93 5.25
308 309 2.031516 CGCAACTGGACCAGAGCTG 61.032 63.158 28.56 20.30 35.34 4.24
309 310 2.345244 CGCAACTGGACCAGAGCT 59.655 61.111 28.56 8.97 35.34 4.09
310 311 2.743928 CCGCAACTGGACCAGAGC 60.744 66.667 28.56 26.08 35.18 4.09
311 312 2.743928 GCCGCAACTGGACCAGAG 60.744 66.667 28.56 19.39 35.18 3.35
312 313 4.329545 GGCCGCAACTGGACCAGA 62.330 66.667 28.56 0.00 35.18 3.86
319 320 4.641645 TCTGTGGGGCCGCAACTG 62.642 66.667 25.93 20.13 35.92 3.16
320 321 4.643387 GTCTGTGGGGCCGCAACT 62.643 66.667 25.93 0.00 35.92 3.16
321 322 4.947147 TGTCTGTGGGGCCGCAAC 62.947 66.667 25.93 19.38 35.92 4.17
322 323 4.641645 CTGTCTGTGGGGCCGCAA 62.642 66.667 25.93 13.64 35.92 4.85
326 327 3.958860 AGTGCTGTCTGTGGGGCC 61.959 66.667 0.00 0.00 0.00 5.80
327 328 2.670934 CAGTGCTGTCTGTGGGGC 60.671 66.667 0.00 0.00 0.00 5.80
328 329 2.670934 GCAGTGCTGTCTGTGGGG 60.671 66.667 8.18 0.00 37.70 4.96
329 330 1.964891 CTGCAGTGCTGTCTGTGGG 60.965 63.158 17.60 0.00 37.70 4.61
330 331 2.614446 GCTGCAGTGCTGTCTGTGG 61.614 63.158 21.31 1.81 37.70 4.17
331 332 2.944429 GCTGCAGTGCTGTCTGTG 59.056 61.111 21.31 3.03 37.70 3.66
332 333 2.664185 CGCTGCAGTGCTGTCTGT 60.664 61.111 21.31 0.00 37.70 3.41
340 341 3.503363 GCCTTAGGCGCTGCAGTG 61.503 66.667 23.02 23.02 39.62 3.66
356 357 2.358737 ACAGTGTGGCGCCTAAGC 60.359 61.111 29.70 15.33 0.00 3.09
357 358 0.037697 TACACAGTGTGGCGCCTAAG 60.038 55.000 29.70 15.10 37.94 2.18
358 359 0.393448 TTACACAGTGTGGCGCCTAA 59.607 50.000 29.70 13.28 37.94 2.69
359 360 0.393448 TTTACACAGTGTGGCGCCTA 59.607 50.000 29.70 14.39 37.94 3.93
360 361 0.884704 CTTTACACAGTGTGGCGCCT 60.885 55.000 29.70 3.37 37.94 5.52
361 362 1.164041 ACTTTACACAGTGTGGCGCC 61.164 55.000 26.40 22.73 37.94 6.53
362 363 0.041312 CACTTTACACAGTGTGGCGC 60.041 55.000 26.40 0.00 39.59 6.53
363 364 0.041312 GCACTTTACACAGTGTGGCG 60.041 55.000 26.40 13.56 45.31 5.69
364 365 1.002468 CTGCACTTTACACAGTGTGGC 60.002 52.381 26.40 18.39 45.31 5.01
365 366 1.002468 GCTGCACTTTACACAGTGTGG 60.002 52.381 26.40 11.51 45.31 4.17
366 367 1.333169 CGCTGCACTTTACACAGTGTG 60.333 52.381 21.77 21.77 45.31 3.82
367 368 0.937304 CGCTGCACTTTACACAGTGT 59.063 50.000 11.87 11.87 45.31 3.55
368 369 0.384725 GCGCTGCACTTTACACAGTG 60.385 55.000 0.00 0.00 46.15 3.66
369 370 1.507141 GGCGCTGCACTTTACACAGT 61.507 55.000 7.64 0.00 33.87 3.55
370 371 1.207593 GGCGCTGCACTTTACACAG 59.792 57.895 7.64 0.00 34.48 3.66
371 372 0.034198 TAGGCGCTGCACTTTACACA 59.966 50.000 7.64 0.00 0.00 3.72
372 373 1.327764 GATAGGCGCTGCACTTTACAC 59.672 52.381 7.64 0.00 0.00 2.90
373 374 1.651987 GATAGGCGCTGCACTTTACA 58.348 50.000 7.64 0.00 0.00 2.41
374 375 0.577269 CGATAGGCGCTGCACTTTAC 59.423 55.000 7.64 0.00 0.00 2.01
375 376 2.971997 CGATAGGCGCTGCACTTTA 58.028 52.632 7.64 0.00 0.00 1.85
376 377 3.799753 CGATAGGCGCTGCACTTT 58.200 55.556 7.64 0.00 0.00 2.66
394 395 2.848858 AAACTGTGCAGCGCCCAAG 61.849 57.895 2.29 5.21 0.00 3.61
395 396 2.832661 AAACTGTGCAGCGCCCAA 60.833 55.556 2.29 0.00 0.00 4.12
396 397 3.594775 CAAACTGTGCAGCGCCCA 61.595 61.111 2.29 0.00 0.00 5.36
397 398 3.595758 ACAAACTGTGCAGCGCCC 61.596 61.111 2.29 0.00 0.00 6.13
398 399 2.353839 CACAAACTGTGCAGCGCC 60.354 61.111 2.29 0.00 41.89 6.53
414 415 1.378762 GGCCAGCCTAAGTGGAACA 59.621 57.895 0.00 0.00 41.43 3.18
415 416 1.378646 GGGCCAGCCTAAGTGGAAC 60.379 63.158 4.39 0.00 37.23 3.62
416 417 2.966732 CGGGCCAGCCTAAGTGGAA 61.967 63.158 4.39 0.00 37.23 3.53
417 418 3.399181 CGGGCCAGCCTAAGTGGA 61.399 66.667 4.39 0.00 37.23 4.02
418 419 3.399181 TCGGGCCAGCCTAAGTGG 61.399 66.667 4.39 0.00 38.21 4.00
419 420 2.125106 GTCGGGCCAGCCTAAGTG 60.125 66.667 4.39 0.00 36.10 3.16
420 421 3.400054 GGTCGGGCCAGCCTAAGT 61.400 66.667 4.39 0.00 37.17 2.24
421 422 4.176752 GGGTCGGGCCAGCCTAAG 62.177 72.222 4.39 0.97 39.65 2.18
422 423 4.733725 AGGGTCGGGCCAGCCTAA 62.734 66.667 20.47 0.00 42.76 2.69
427 428 3.151022 GAGAGAGGGTCGGGCCAG 61.151 72.222 4.39 0.00 39.65 4.85
428 429 4.779733 GGAGAGAGGGTCGGGCCA 62.780 72.222 4.39 0.00 39.65 5.36
431 432 3.742248 GAGGGGAGAGAGGGTCGGG 62.742 73.684 0.00 0.00 0.00 5.14
432 433 2.123640 GAGGGGAGAGAGGGTCGG 60.124 72.222 0.00 0.00 0.00 4.79
433 434 2.123640 GGAGGGGAGAGAGGGTCG 60.124 72.222 0.00 0.00 0.00 4.79
434 435 2.284151 GGGAGGGGAGAGAGGGTC 59.716 72.222 0.00 0.00 0.00 4.46
435 436 2.540910 TGGGAGGGGAGAGAGGGT 60.541 66.667 0.00 0.00 0.00 4.34
436 437 2.041405 GTGGGAGGGGAGAGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
437 438 2.041405 GGTGGGAGGGGAGAGAGG 60.041 72.222 0.00 0.00 0.00 3.69
438 439 2.041405 GGGTGGGAGGGGAGAGAG 60.041 72.222 0.00 0.00 0.00 3.20
439 440 3.695825 GGGGTGGGAGGGGAGAGA 61.696 72.222 0.00 0.00 0.00 3.10
440 441 4.024984 TGGGGTGGGAGGGGAGAG 62.025 72.222 0.00 0.00 0.00 3.20
441 442 4.348495 GTGGGGTGGGAGGGGAGA 62.348 72.222 0.00 0.00 0.00 3.71
450 451 4.596585 GTGTGTGGGGTGGGGTGG 62.597 72.222 0.00 0.00 0.00 4.61
451 452 4.596585 GGTGTGTGGGGTGGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
456 457 4.596585 GTGGGGGTGTGTGGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
461 462 4.596585 GTGGGGTGGGGGTGTGTG 62.597 72.222 0.00 0.00 0.00 3.82
470 471 2.150014 CTAAGGGTTGGGTGGGGTGG 62.150 65.000 0.00 0.00 0.00 4.61
471 472 1.137594 TCTAAGGGTTGGGTGGGGTG 61.138 60.000 0.00 0.00 0.00 4.61
472 473 1.138228 GTCTAAGGGTTGGGTGGGGT 61.138 60.000 0.00 0.00 0.00 4.95
473 474 0.845102 AGTCTAAGGGTTGGGTGGGG 60.845 60.000 0.00 0.00 0.00 4.96
474 475 1.073098 AAGTCTAAGGGTTGGGTGGG 58.927 55.000 0.00 0.00 0.00 4.61
475 476 1.886655 GCAAGTCTAAGGGTTGGGTGG 60.887 57.143 0.00 0.00 0.00 4.61
476 477 1.534729 GCAAGTCTAAGGGTTGGGTG 58.465 55.000 0.00 0.00 0.00 4.61
477 478 0.036306 CGCAAGTCTAAGGGTTGGGT 59.964 55.000 0.00 0.00 31.41 4.51
478 479 1.305930 GCGCAAGTCTAAGGGTTGGG 61.306 60.000 0.30 0.00 41.68 4.12
479 480 1.305930 GGCGCAAGTCTAAGGGTTGG 61.306 60.000 10.83 0.00 40.30 3.77
480 481 1.305930 GGGCGCAAGTCTAAGGGTTG 61.306 60.000 10.83 0.00 45.30 3.77
481 482 1.002502 GGGCGCAAGTCTAAGGGTT 60.003 57.895 10.83 0.00 45.30 4.11
482 483 2.669240 GGGCGCAAGTCTAAGGGT 59.331 61.111 10.83 0.00 45.30 4.34
483 484 2.124695 GGGGCGCAAGTCTAAGGG 60.125 66.667 10.83 0.00 45.30 3.95
484 485 1.153349 GAGGGGCGCAAGTCTAAGG 60.153 63.158 10.83 0.00 45.30 2.69
485 486 1.153349 GGAGGGGCGCAAGTCTAAG 60.153 63.158 10.83 0.00 45.30 2.18
486 487 1.612442 AGGAGGGGCGCAAGTCTAA 60.612 57.895 10.83 0.00 45.30 2.10
487 488 2.038975 AGGAGGGGCGCAAGTCTA 59.961 61.111 10.83 0.00 45.30 2.59
488 489 3.394836 GAGGAGGGGCGCAAGTCT 61.395 66.667 10.83 0.00 45.30 3.24
489 490 3.378399 GAGAGGAGGGGCGCAAGTC 62.378 68.421 10.83 0.97 45.19 3.01
490 491 3.394836 GAGAGGAGGGGCGCAAGT 61.395 66.667 10.83 0.00 41.68 3.16
491 492 2.585791 GAAGAGAGGAGGGGCGCAAG 62.586 65.000 10.83 0.00 43.44 4.01
492 493 2.607750 AAGAGAGGAGGGGCGCAA 60.608 61.111 10.83 0.00 0.00 4.85
493 494 3.077556 GAAGAGAGGAGGGGCGCA 61.078 66.667 10.83 0.00 0.00 6.09
494 495 3.855853 GGAAGAGAGGAGGGGCGC 61.856 72.222 0.00 0.00 0.00 6.53
495 496 3.157949 GGGAAGAGAGGAGGGGCG 61.158 72.222 0.00 0.00 0.00 6.13
496 497 2.770475 GGGGAAGAGAGGAGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
497 498 1.074850 GAGGGGAAGAGAGGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
498 499 0.105709 GAGAGGGGAAGAGAGGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
499 500 0.105709 GGAGAGGGGAAGAGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
500 501 0.105709 GGGAGAGGGGAAGAGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
501 502 1.595058 GGGGAGAGGGGAAGAGAGGA 61.595 65.000 0.00 0.00 0.00 3.71
502 503 1.074850 GGGGAGAGGGGAAGAGAGG 60.075 68.421 0.00 0.00 0.00 3.69
503 504 1.074850 GGGGGAGAGGGGAAGAGAG 60.075 68.421 0.00 0.00 0.00 3.20
504 505 3.120191 GGGGGAGAGGGGAAGAGA 58.880 66.667 0.00 0.00 0.00 3.10
518 519 2.200081 TGAGAAGGATTTGAGAGGGGG 58.800 52.381 0.00 0.00 0.00 5.40
519 520 4.307032 TTTGAGAAGGATTTGAGAGGGG 57.693 45.455 0.00 0.00 0.00 4.79
520 521 5.753716 AGATTTGAGAAGGATTTGAGAGGG 58.246 41.667 0.00 0.00 0.00 4.30
521 522 6.404513 GCAAGATTTGAGAAGGATTTGAGAGG 60.405 42.308 0.00 0.00 0.00 3.69
522 523 6.150641 TGCAAGATTTGAGAAGGATTTGAGAG 59.849 38.462 0.00 0.00 0.00 3.20
523 524 6.005823 TGCAAGATTTGAGAAGGATTTGAGA 58.994 36.000 0.00 0.00 0.00 3.27
524 525 6.263516 TGCAAGATTTGAGAAGGATTTGAG 57.736 37.500 0.00 0.00 0.00 3.02
525 526 6.653526 TTGCAAGATTTGAGAAGGATTTGA 57.346 33.333 0.00 0.00 0.00 2.69
526 527 7.064253 GGATTTGCAAGATTTGAGAAGGATTTG 59.936 37.037 0.00 0.00 0.00 2.32
527 528 7.101700 GGATTTGCAAGATTTGAGAAGGATTT 58.898 34.615 0.00 0.00 0.00 2.17
528 529 6.626623 CGGATTTGCAAGATTTGAGAAGGATT 60.627 38.462 0.00 0.00 0.00 3.01
529 530 5.163581 CGGATTTGCAAGATTTGAGAAGGAT 60.164 40.000 0.00 0.00 0.00 3.24
530 531 4.156556 CGGATTTGCAAGATTTGAGAAGGA 59.843 41.667 0.00 0.00 0.00 3.36
531 532 4.418392 CGGATTTGCAAGATTTGAGAAGG 58.582 43.478 0.00 0.00 0.00 3.46
532 533 4.156556 TCCGGATTTGCAAGATTTGAGAAG 59.843 41.667 0.00 0.00 0.00 2.85
533 534 4.078537 TCCGGATTTGCAAGATTTGAGAA 58.921 39.130 0.00 0.00 0.00 2.87
534 535 3.684908 TCCGGATTTGCAAGATTTGAGA 58.315 40.909 0.00 0.00 0.00 3.27
535 536 3.441572 ACTCCGGATTTGCAAGATTTGAG 59.558 43.478 3.57 7.44 0.00 3.02
536 537 3.420893 ACTCCGGATTTGCAAGATTTGA 58.579 40.909 3.57 0.00 0.00 2.69
537 538 3.855689 ACTCCGGATTTGCAAGATTTG 57.144 42.857 3.57 0.00 0.00 2.32
538 539 6.152661 TCAAATACTCCGGATTTGCAAGATTT 59.847 34.615 19.72 7.81 41.86 2.17
539 540 5.652014 TCAAATACTCCGGATTTGCAAGATT 59.348 36.000 19.72 2.50 41.86 2.40
540 541 5.066505 GTCAAATACTCCGGATTTGCAAGAT 59.933 40.000 19.72 0.00 41.86 2.40
541 542 4.394920 GTCAAATACTCCGGATTTGCAAGA 59.605 41.667 19.72 5.52 41.86 3.02
542 543 4.438744 GGTCAAATACTCCGGATTTGCAAG 60.439 45.833 19.72 3.87 41.86 4.01
543 544 3.442273 GGTCAAATACTCCGGATTTGCAA 59.558 43.478 19.72 0.00 41.86 4.08
544 545 3.013921 GGTCAAATACTCCGGATTTGCA 58.986 45.455 19.72 9.45 41.86 4.08
545 546 3.013921 TGGTCAAATACTCCGGATTTGC 58.986 45.455 19.72 15.29 41.86 3.68
546 547 4.036734 CCATGGTCAAATACTCCGGATTTG 59.963 45.833 18.83 18.83 42.94 2.32
547 548 4.080015 TCCATGGTCAAATACTCCGGATTT 60.080 41.667 12.58 0.00 0.00 2.17
548 549 3.458118 TCCATGGTCAAATACTCCGGATT 59.542 43.478 12.58 0.52 0.00 3.01
549 550 3.045634 TCCATGGTCAAATACTCCGGAT 58.954 45.455 12.58 0.00 0.00 4.18
550 551 2.473070 TCCATGGTCAAATACTCCGGA 58.527 47.619 12.58 2.93 0.00 5.14
551 552 3.492102 ATCCATGGTCAAATACTCCGG 57.508 47.619 12.58 0.00 0.00 5.14
552 553 4.024893 CGAAATCCATGGTCAAATACTCCG 60.025 45.833 12.58 0.00 0.00 4.63
553 554 5.123227 TCGAAATCCATGGTCAAATACTCC 58.877 41.667 12.58 0.00 0.00 3.85
554 555 6.677781 TTCGAAATCCATGGTCAAATACTC 57.322 37.500 12.58 0.00 0.00 2.59
555 556 5.066505 GCTTCGAAATCCATGGTCAAATACT 59.933 40.000 12.58 0.00 0.00 2.12
556 557 5.273944 GCTTCGAAATCCATGGTCAAATAC 58.726 41.667 12.58 0.00 0.00 1.89
557 558 4.338118 GGCTTCGAAATCCATGGTCAAATA 59.662 41.667 12.58 0.00 0.00 1.40
558 559 3.131046 GGCTTCGAAATCCATGGTCAAAT 59.869 43.478 12.58 0.00 0.00 2.32
559 560 2.491693 GGCTTCGAAATCCATGGTCAAA 59.508 45.455 12.58 0.00 0.00 2.69
560 561 2.091541 GGCTTCGAAATCCATGGTCAA 58.908 47.619 12.58 0.00 0.00 3.18
561 562 1.004161 TGGCTTCGAAATCCATGGTCA 59.996 47.619 12.58 0.00 0.00 4.02
562 563 1.750193 TGGCTTCGAAATCCATGGTC 58.250 50.000 12.58 0.63 0.00 4.02
563 564 2.214376 TTGGCTTCGAAATCCATGGT 57.786 45.000 12.58 0.00 0.00 3.55
1056 1058 0.110486 ATGCGTCCTCCCACTTGTTT 59.890 50.000 0.00 0.00 0.00 2.83
1218 1220 1.069906 GCGTTAGTTGGAAGTGCACAG 60.070 52.381 21.04 0.00 0.00 3.66
1219 1221 0.941542 GCGTTAGTTGGAAGTGCACA 59.058 50.000 21.04 0.00 0.00 4.57
1333 1336 2.412870 TCCACGTGAAGTACTTGCATG 58.587 47.619 19.30 16.78 0.00 4.06
1386 1389 5.652452 GCCTAAGACAATCTTGGTATTGGTT 59.348 40.000 1.26 0.00 40.48 3.67
1448 1451 0.605589 TCTGACGACGCTCTTCCTCA 60.606 55.000 0.00 0.00 0.00 3.86
1522 1525 1.662438 CCTCTCCTCCTCACGAGCAC 61.662 65.000 0.00 0.00 37.27 4.40
1543 1546 3.981211 CAAGCCTTTGCAAGCTTTCTTA 58.019 40.909 19.95 0.00 46.99 2.10
1855 1861 7.332557 TCACCGGAACAACATAATACTTACAT 58.667 34.615 9.46 0.00 0.00 2.29
1950 1956 1.379710 TTGGGCGCTGCATGGTATT 60.380 52.632 7.64 0.00 0.00 1.89
2018 2024 4.154195 CCACGAAAATTACCAAGTCAGAGG 59.846 45.833 0.00 0.00 0.00 3.69
2191 2203 3.181458 GCCTCTCGGGTATATTTCCAACA 60.181 47.826 0.00 0.00 37.43 3.33
2192 2204 3.181458 TGCCTCTCGGGTATATTTCCAAC 60.181 47.826 0.00 0.00 37.43 3.77
2193 2205 3.042682 TGCCTCTCGGGTATATTTCCAA 58.957 45.455 0.00 0.00 37.43 3.53
2195 2207 3.764237 TTGCCTCTCGGGTATATTTCC 57.236 47.619 0.00 0.00 37.43 3.13
2197 2209 9.802039 TTTTATTATTGCCTCTCGGGTATATTT 57.198 29.630 0.00 0.00 37.43 1.40
2198 2210 9.975218 ATTTTATTATTGCCTCTCGGGTATATT 57.025 29.630 0.00 0.00 37.43 1.28
2199 2211 9.396022 CATTTTATTATTGCCTCTCGGGTATAT 57.604 33.333 0.00 0.00 37.43 0.86
2200 2212 7.827236 CCATTTTATTATTGCCTCTCGGGTATA 59.173 37.037 0.00 0.00 37.43 1.47
2201 2213 6.659242 CCATTTTATTATTGCCTCTCGGGTAT 59.341 38.462 0.00 0.00 37.43 2.73
2202 2214 6.001460 CCATTTTATTATTGCCTCTCGGGTA 58.999 40.000 0.00 0.00 37.43 3.69
2203 2215 4.827284 CCATTTTATTATTGCCTCTCGGGT 59.173 41.667 0.00 0.00 37.43 5.28
2204 2216 4.827284 ACCATTTTATTATTGCCTCTCGGG 59.173 41.667 0.00 0.00 38.36 5.14
2205 2217 6.391227 AACCATTTTATTATTGCCTCTCGG 57.609 37.500 0.00 0.00 0.00 4.63
2240 2252 9.685276 ACAATAGACAATTATCATGAACAAGGA 57.315 29.630 0.00 0.00 0.00 3.36
2246 2258 9.955208 GCATGAACAATAGACAATTATCATGAA 57.045 29.630 19.46 0.00 44.39 2.57
2247 2259 9.346005 AGCATGAACAATAGACAATTATCATGA 57.654 29.630 19.46 0.00 44.39 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.