Multiple sequence alignment - TraesCS6D01G229700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G229700 chr6D 100.000 1709 0 0 1 1709 322202003 322200295 0.000000e+00 3157
1 TraesCS6D01G229700 chr6D 100.000 304 0 0 2079 2382 322199925 322199622 1.600000e-156 562
2 TraesCS6D01G229700 chr6D 96.804 219 7 0 2164 2382 68704159 68703941 1.350000e-97 366
3 TraesCS6D01G229700 chr6D 96.804 219 7 0 2164 2382 416446974 416446756 1.350000e-97 366
4 TraesCS6D01G229700 chr6D 95.964 223 9 0 2160 2382 78503097 78503319 1.740000e-96 363
5 TraesCS6D01G229700 chr6A 95.468 1324 44 5 358 1674 459678561 459677247 0.000000e+00 2098
6 TraesCS6D01G229700 chr6B 95.447 1252 38 6 399 1642 501127581 501128821 0.000000e+00 1978
7 TraesCS6D01G229700 chr7D 96.460 226 6 2 2159 2382 69082923 69083148 2.890000e-99 372
8 TraesCS6D01G229700 chr7D 97.260 219 6 0 2164 2382 575668092 575668310 2.890000e-99 372
9 TraesCS6D01G229700 chr7D 95.982 224 9 0 2159 2382 638634976 638635199 4.840000e-97 364
10 TraesCS6D01G229700 chr5D 97.273 220 5 1 2164 2382 103173838 103173619 2.890000e-99 372
11 TraesCS6D01G229700 chr4D 97.260 219 6 0 2164 2382 414625526 414625744 2.890000e-99 372
12 TraesCS6D01G229700 chr4D 82.781 151 20 5 1213 1360 507119778 507119925 1.920000e-26 130
13 TraesCS6D01G229700 chr4D 82.400 125 22 0 1236 1360 507125009 507125133 2.500000e-20 110
14 TraesCS6D01G229700 chr1D 95.964 223 9 0 2160 2382 11876333 11876555 1.740000e-96 363
15 TraesCS6D01G229700 chr4B 86.400 125 17 0 1236 1360 654466052 654465928 1.150000e-28 137
16 TraesCS6D01G229700 chr5A 83.444 151 19 5 1213 1360 692062434 692062287 4.130000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G229700 chr6D 322199622 322202003 2381 True 1859.5 3157 100.000 1 2382 2 chr6D.!!$R3 2381
1 TraesCS6D01G229700 chr6A 459677247 459678561 1314 True 2098.0 2098 95.468 358 1674 1 chr6A.!!$R1 1316
2 TraesCS6D01G229700 chr6B 501127581 501128821 1240 False 1978.0 1978 95.447 399 1642 1 chr6B.!!$F1 1243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.036388 TTGAGGTGCTCGAATGGGTC 60.036 55.0 0.0 0.0 32.35 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 2214 0.104855 GGCCGTATGCATCACTCTGA 59.895 55.0 0.19 0.0 43.89 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.393472 CCTTTAGGCTGCTAGCTGG 57.607 57.895 21.46 12.77 41.99 4.85
30 31 0.833287 CCTTTAGGCTGCTAGCTGGA 59.167 55.000 21.46 0.00 41.99 3.86
31 32 1.202627 CCTTTAGGCTGCTAGCTGGAG 60.203 57.143 21.46 9.72 41.99 3.86
38 39 4.511636 GCTAGCTGGAGCAGTGTC 57.488 61.111 7.70 0.00 45.16 3.67
39 40 1.593787 GCTAGCTGGAGCAGTGTCA 59.406 57.895 7.70 0.00 45.16 3.58
40 41 0.739112 GCTAGCTGGAGCAGTGTCAC 60.739 60.000 7.70 0.00 45.16 3.67
41 42 0.605083 CTAGCTGGAGCAGTGTCACA 59.395 55.000 5.62 0.00 45.16 3.58
42 43 0.318441 TAGCTGGAGCAGTGTCACAC 59.682 55.000 0.00 0.00 45.16 3.82
43 44 2.313172 GCTGGAGCAGTGTCACACG 61.313 63.158 1.22 0.00 39.64 4.49
44 45 1.363807 CTGGAGCAGTGTCACACGA 59.636 57.895 1.22 0.00 39.64 4.35
45 46 0.941463 CTGGAGCAGTGTCACACGAC 60.941 60.000 1.22 0.00 42.93 4.34
46 47 2.016704 GGAGCAGTGTCACACGACG 61.017 63.158 1.22 0.00 45.80 5.12
47 48 1.299165 GAGCAGTGTCACACGACGT 60.299 57.895 1.22 0.00 45.80 4.34
48 49 0.870307 GAGCAGTGTCACACGACGTT 60.870 55.000 1.22 0.00 45.80 3.99
49 50 0.870307 AGCAGTGTCACACGACGTTC 60.870 55.000 1.22 0.00 45.80 3.95
50 51 1.143373 GCAGTGTCACACGACGTTCA 61.143 55.000 1.22 0.00 45.80 3.18
51 52 0.570734 CAGTGTCACACGACGTTCAC 59.429 55.000 1.22 6.05 45.80 3.18
52 53 0.171679 AGTGTCACACGACGTTCACA 59.828 50.000 17.90 10.60 45.80 3.58
53 54 0.296642 GTGTCACACGACGTTCACAC 59.703 55.000 14.66 14.66 45.80 3.82
54 55 0.109226 TGTCACACGACGTTCACACA 60.109 50.000 0.00 0.00 45.80 3.72
55 56 0.296642 GTCACACGACGTTCACACAC 59.703 55.000 0.00 0.00 31.07 3.82
56 57 0.802994 TCACACGACGTTCACACACC 60.803 55.000 0.00 0.00 0.00 4.16
57 58 0.804544 CACACGACGTTCACACACCT 60.805 55.000 0.00 0.00 0.00 4.00
58 59 0.108520 ACACGACGTTCACACACCTT 60.109 50.000 0.00 0.00 0.00 3.50
59 60 0.300491 CACGACGTTCACACACCTTG 59.700 55.000 0.00 0.00 0.00 3.61
60 61 0.808453 ACGACGTTCACACACCTTGG 60.808 55.000 0.00 0.00 0.00 3.61
61 62 0.528901 CGACGTTCACACACCTTGGA 60.529 55.000 0.00 0.00 0.00 3.53
62 63 1.217882 GACGTTCACACACCTTGGAG 58.782 55.000 0.00 0.00 0.00 3.86
63 64 0.179056 ACGTTCACACACCTTGGAGG 60.179 55.000 0.00 0.00 42.49 4.30
64 65 0.105964 CGTTCACACACCTTGGAGGA 59.894 55.000 0.07 0.00 37.67 3.71
65 66 1.873903 CGTTCACACACCTTGGAGGAG 60.874 57.143 0.07 0.00 37.67 3.69
66 67 1.416401 GTTCACACACCTTGGAGGAGA 59.584 52.381 0.07 0.00 37.67 3.71
67 68 1.801242 TCACACACCTTGGAGGAGAA 58.199 50.000 0.07 0.00 37.67 2.87
68 69 2.338809 TCACACACCTTGGAGGAGAAT 58.661 47.619 0.07 0.00 37.67 2.40
69 70 2.303022 TCACACACCTTGGAGGAGAATC 59.697 50.000 0.07 0.00 37.67 2.52
88 89 3.455737 CCACTGGATGGTTGGGTTT 57.544 52.632 0.00 0.00 44.46 3.27
89 90 1.256812 CCACTGGATGGTTGGGTTTC 58.743 55.000 0.00 0.00 44.46 2.78
90 91 1.203050 CCACTGGATGGTTGGGTTTCT 60.203 52.381 0.00 0.00 44.46 2.52
91 92 1.888512 CACTGGATGGTTGGGTTTCTG 59.111 52.381 0.00 0.00 0.00 3.02
92 93 1.780309 ACTGGATGGTTGGGTTTCTGA 59.220 47.619 0.00 0.00 0.00 3.27
93 94 2.162681 CTGGATGGTTGGGTTTCTGAC 58.837 52.381 0.00 0.00 0.00 3.51
104 105 3.703001 GGTTTCTGACCTTCAGGATGA 57.297 47.619 0.00 0.00 44.39 2.92
105 106 3.054065 GGGTTTCTGACCTTCAGGATGAT 60.054 47.826 0.00 0.00 45.49 2.45
106 107 4.568592 GGGTTTCTGACCTTCAGGATGATT 60.569 45.833 0.00 0.00 45.49 2.57
107 108 5.012893 GGTTTCTGACCTTCAGGATGATTT 58.987 41.667 0.00 0.00 44.39 2.17
108 109 5.124617 GGTTTCTGACCTTCAGGATGATTTC 59.875 44.000 0.00 0.00 44.39 2.17
109 110 8.052930 GGTTTCTGACCTTCAGGATGATTTCG 62.053 46.154 0.00 0.00 44.39 3.46
116 117 1.409064 TCAGGATGATTTCGAGACCCG 59.591 52.381 0.00 0.00 42.56 5.28
117 118 1.409064 CAGGATGATTTCGAGACCCGA 59.591 52.381 0.00 0.00 42.53 5.14
118 119 2.036475 CAGGATGATTTCGAGACCCGAT 59.964 50.000 0.00 0.00 43.43 4.18
119 120 3.858877 CAGGATGATTTCGAGACCCGATC 60.859 52.174 0.00 0.00 43.43 3.69
145 146 4.634133 GACGTGACGGGCGTGTCA 62.634 66.667 10.66 7.06 46.15 3.58
150 151 3.755628 GACGGGCGTGTCAGGCTA 61.756 66.667 16.51 0.00 38.75 3.93
151 152 3.984200 GACGGGCGTGTCAGGCTAC 62.984 68.421 16.51 9.46 38.75 3.58
165 166 4.208686 CTACGCCTGGGCCGTCTC 62.209 72.222 5.99 0.00 37.98 3.36
168 169 2.914756 TACGCCTGGGCCGTCTCATA 62.915 60.000 5.99 0.00 37.98 2.15
169 170 2.872388 CGCCTGGGCCGTCTCATAT 61.872 63.158 5.99 0.00 37.98 1.78
170 171 1.451936 GCCTGGGCCGTCTCATATT 59.548 57.895 0.00 0.00 34.56 1.28
171 172 0.603975 GCCTGGGCCGTCTCATATTC 60.604 60.000 0.00 0.00 34.56 1.75
172 173 0.319900 CCTGGGCCGTCTCATATTCG 60.320 60.000 0.00 0.00 0.00 3.34
173 174 0.389391 CTGGGCCGTCTCATATTCGT 59.611 55.000 0.00 0.00 0.00 3.85
174 175 0.387929 TGGGCCGTCTCATATTCGTC 59.612 55.000 0.00 0.00 0.00 4.20
175 176 0.319641 GGGCCGTCTCATATTCGTCC 60.320 60.000 0.00 0.00 0.00 4.79
176 177 0.674534 GGCCGTCTCATATTCGTCCT 59.325 55.000 0.00 0.00 0.00 3.85
177 178 1.884579 GGCCGTCTCATATTCGTCCTA 59.115 52.381 0.00 0.00 0.00 2.94
178 179 2.295349 GGCCGTCTCATATTCGTCCTAA 59.705 50.000 0.00 0.00 0.00 2.69
179 180 3.243636 GGCCGTCTCATATTCGTCCTAAA 60.244 47.826 0.00 0.00 0.00 1.85
180 181 4.557205 GCCGTCTCATATTCGTCCTAAAT 58.443 43.478 0.00 0.00 0.00 1.40
181 182 4.989168 GCCGTCTCATATTCGTCCTAAATT 59.011 41.667 0.00 0.00 0.00 1.82
182 183 5.465724 GCCGTCTCATATTCGTCCTAAATTT 59.534 40.000 0.00 0.00 0.00 1.82
183 184 6.564125 GCCGTCTCATATTCGTCCTAAATTTG 60.564 42.308 0.00 0.00 0.00 2.32
184 185 6.700081 CCGTCTCATATTCGTCCTAAATTTGA 59.300 38.462 0.00 0.00 0.00 2.69
185 186 7.096023 CCGTCTCATATTCGTCCTAAATTTGAG 60.096 40.741 0.00 8.90 40.54 3.02
186 187 7.435488 CGTCTCATATTCGTCCTAAATTTGAGT 59.565 37.037 0.00 0.00 40.30 3.41
187 188 9.099454 GTCTCATATTCGTCCTAAATTTGAGTT 57.901 33.333 0.00 0.00 40.30 3.01
188 189 9.098355 TCTCATATTCGTCCTAAATTTGAGTTG 57.902 33.333 0.00 0.00 40.30 3.16
189 190 8.786826 TCATATTCGTCCTAAATTTGAGTTGT 57.213 30.769 0.00 0.00 0.00 3.32
190 191 9.878667 TCATATTCGTCCTAAATTTGAGTTGTA 57.121 29.630 0.00 0.00 0.00 2.41
195 196 9.878667 TTCGTCCTAAATTTGAGTTGTATATGA 57.121 29.630 0.00 0.00 0.00 2.15
196 197 9.529325 TCGTCCTAAATTTGAGTTGTATATGAG 57.471 33.333 0.00 0.00 0.00 2.90
197 198 8.765219 CGTCCTAAATTTGAGTTGTATATGAGG 58.235 37.037 0.00 0.00 0.00 3.86
198 199 9.057089 GTCCTAAATTTGAGTTGTATATGAGGG 57.943 37.037 0.00 0.00 0.00 4.30
199 200 8.998814 TCCTAAATTTGAGTTGTATATGAGGGA 58.001 33.333 0.00 0.00 0.00 4.20
200 201 9.799106 CCTAAATTTGAGTTGTATATGAGGGAT 57.201 33.333 0.00 0.00 0.00 3.85
202 203 7.516198 AATTTGAGTTGTATATGAGGGATGC 57.484 36.000 0.00 0.00 0.00 3.91
203 204 4.623932 TGAGTTGTATATGAGGGATGCC 57.376 45.455 0.00 0.00 0.00 4.40
204 205 3.973305 TGAGTTGTATATGAGGGATGCCA 59.027 43.478 5.86 0.00 0.00 4.92
205 206 4.598807 TGAGTTGTATATGAGGGATGCCAT 59.401 41.667 5.86 0.00 0.00 4.40
206 207 5.073554 TGAGTTGTATATGAGGGATGCCATT 59.926 40.000 5.86 0.00 0.00 3.16
207 208 5.564550 AGTTGTATATGAGGGATGCCATTC 58.435 41.667 5.86 0.00 0.00 2.67
208 209 5.073554 AGTTGTATATGAGGGATGCCATTCA 59.926 40.000 5.86 1.16 0.00 2.57
209 210 5.581350 TGTATATGAGGGATGCCATTCAA 57.419 39.130 5.86 0.00 0.00 2.69
210 211 5.316167 TGTATATGAGGGATGCCATTCAAC 58.684 41.667 5.86 0.00 0.00 3.18
211 212 2.077687 ATGAGGGATGCCATTCAACC 57.922 50.000 5.86 0.00 36.94 3.77
215 216 3.594453 GGATGCCATTCAACCCAGA 57.406 52.632 0.00 0.00 31.94 3.86
216 217 1.106285 GGATGCCATTCAACCCAGAC 58.894 55.000 0.00 0.00 31.94 3.51
217 218 1.616725 GGATGCCATTCAACCCAGACA 60.617 52.381 0.00 0.00 31.94 3.41
218 219 2.381911 GATGCCATTCAACCCAGACAT 58.618 47.619 0.00 0.00 0.00 3.06
219 220 2.307496 TGCCATTCAACCCAGACATT 57.693 45.000 0.00 0.00 0.00 2.71
220 221 2.607499 TGCCATTCAACCCAGACATTT 58.393 42.857 0.00 0.00 0.00 2.32
221 222 2.299582 TGCCATTCAACCCAGACATTTG 59.700 45.455 0.00 0.00 0.00 2.32
222 223 2.562298 GCCATTCAACCCAGACATTTGA 59.438 45.455 0.00 0.00 0.00 2.69
223 224 3.196254 GCCATTCAACCCAGACATTTGAT 59.804 43.478 0.00 0.00 0.00 2.57
224 225 4.402155 GCCATTCAACCCAGACATTTGATA 59.598 41.667 0.00 0.00 0.00 2.15
225 226 5.069516 GCCATTCAACCCAGACATTTGATAT 59.930 40.000 0.00 0.00 0.00 1.63
226 227 6.265196 GCCATTCAACCCAGACATTTGATATA 59.735 38.462 0.00 0.00 0.00 0.86
227 228 7.522725 GCCATTCAACCCAGACATTTGATATAG 60.523 40.741 0.00 0.00 0.00 1.31
228 229 7.720957 CCATTCAACCCAGACATTTGATATAGA 59.279 37.037 0.00 0.00 0.00 1.98
229 230 9.293404 CATTCAACCCAGACATTTGATATAGAT 57.707 33.333 0.00 0.00 0.00 1.98
230 231 9.872684 ATTCAACCCAGACATTTGATATAGATT 57.127 29.630 0.00 0.00 0.00 2.40
231 232 9.699410 TTCAACCCAGACATTTGATATAGATTT 57.301 29.630 0.00 0.00 0.00 2.17
232 233 9.123902 TCAACCCAGACATTTGATATAGATTTG 57.876 33.333 0.00 0.00 0.00 2.32
233 234 9.123902 CAACCCAGACATTTGATATAGATTTGA 57.876 33.333 0.00 0.00 0.00 2.69
234 235 8.915057 ACCCAGACATTTGATATAGATTTGAG 57.085 34.615 0.00 0.00 0.00 3.02
235 236 7.941238 ACCCAGACATTTGATATAGATTTGAGG 59.059 37.037 0.00 0.00 0.00 3.86
236 237 7.941238 CCCAGACATTTGATATAGATTTGAGGT 59.059 37.037 0.00 0.00 0.00 3.85
237 238 8.781196 CCAGACATTTGATATAGATTTGAGGTG 58.219 37.037 0.00 0.00 0.00 4.00
238 239 8.288208 CAGACATTTGATATAGATTTGAGGTGC 58.712 37.037 0.00 0.00 0.00 5.01
239 240 8.216423 AGACATTTGATATAGATTTGAGGTGCT 58.784 33.333 0.00 0.00 0.00 4.40
240 241 8.388484 ACATTTGATATAGATTTGAGGTGCTC 57.612 34.615 0.00 0.00 0.00 4.26
241 242 7.172190 ACATTTGATATAGATTTGAGGTGCTCG 59.828 37.037 0.00 0.00 32.35 5.03
242 243 6.405278 TTGATATAGATTTGAGGTGCTCGA 57.595 37.500 0.00 0.00 32.35 4.04
243 244 6.405278 TGATATAGATTTGAGGTGCTCGAA 57.595 37.500 0.00 0.00 38.13 3.71
244 245 6.997655 TGATATAGATTTGAGGTGCTCGAAT 58.002 36.000 0.00 0.00 44.50 3.34
245 246 6.870439 TGATATAGATTTGAGGTGCTCGAATG 59.130 38.462 0.00 0.00 42.62 2.67
246 247 2.636830 AGATTTGAGGTGCTCGAATGG 58.363 47.619 0.00 0.00 42.62 3.16
247 248 1.672881 GATTTGAGGTGCTCGAATGGG 59.327 52.381 0.00 0.00 42.62 4.00
248 249 0.400213 TTTGAGGTGCTCGAATGGGT 59.600 50.000 0.00 0.00 29.84 4.51
249 250 0.036388 TTGAGGTGCTCGAATGGGTC 60.036 55.000 0.00 0.00 32.35 4.46
260 261 3.131240 CGAATGGGTCGGATTTTTGAC 57.869 47.619 0.00 0.00 46.45 3.18
264 265 2.936928 GGTCGGATTTTTGACCGGT 58.063 52.632 6.92 6.92 44.68 5.28
265 266 0.800631 GGTCGGATTTTTGACCGGTC 59.199 55.000 28.17 28.17 44.68 4.79
266 267 1.878948 GGTCGGATTTTTGACCGGTCA 60.879 52.381 33.23 33.23 44.68 4.02
267 268 3.757925 GGTCGGATTTTTGACCGGTCAG 61.758 54.545 34.25 22.00 44.68 3.51
268 269 1.519408 CGGATTTTTGACCGGTCAGT 58.481 50.000 34.25 22.21 44.59 3.41
269 270 1.196808 CGGATTTTTGACCGGTCAGTG 59.803 52.381 34.25 17.22 44.59 3.66
270 271 2.500229 GGATTTTTGACCGGTCAGTGA 58.500 47.619 34.25 23.89 41.13 3.41
271 272 2.225727 GGATTTTTGACCGGTCAGTGAC 59.774 50.000 34.25 23.99 41.13 3.67
272 273 2.404923 TTTTTGACCGGTCAGTGACA 57.595 45.000 34.25 19.04 41.13 3.58
273 274 1.948104 TTTTGACCGGTCAGTGACAG 58.052 50.000 34.25 19.88 41.13 3.51
277 278 4.394712 CCGGTCAGTGACAGGGCC 62.395 72.222 28.89 10.21 42.61 5.80
278 279 3.625897 CGGTCAGTGACAGGGCCA 61.626 66.667 24.20 0.00 33.68 5.36
279 280 2.959484 CGGTCAGTGACAGGGCCAT 61.959 63.158 24.20 0.00 33.68 4.40
280 281 1.078143 GGTCAGTGACAGGGCCATC 60.078 63.158 24.20 3.13 33.68 3.51
281 282 1.557269 GGTCAGTGACAGGGCCATCT 61.557 60.000 24.20 0.00 33.68 2.90
282 283 0.392193 GTCAGTGACAGGGCCATCTG 60.392 60.000 18.54 6.23 40.40 2.90
287 288 2.607750 ACAGGGCCATCTGTCCGT 60.608 61.111 6.18 0.00 43.82 4.69
288 289 2.124983 CAGGGCCATCTGTCCGTG 60.125 66.667 6.18 0.00 32.81 4.94
289 290 2.607750 AGGGCCATCTGTCCGTGT 60.608 61.111 6.18 0.00 0.00 4.49
290 291 1.305802 AGGGCCATCTGTCCGTGTA 60.306 57.895 6.18 0.00 0.00 2.90
291 292 0.691078 AGGGCCATCTGTCCGTGTAT 60.691 55.000 6.18 0.00 0.00 2.29
292 293 0.180406 GGGCCATCTGTCCGTGTATT 59.820 55.000 4.39 0.00 0.00 1.89
293 294 1.408266 GGGCCATCTGTCCGTGTATTT 60.408 52.381 4.39 0.00 0.00 1.40
294 295 1.670811 GGCCATCTGTCCGTGTATTTG 59.329 52.381 0.00 0.00 0.00 2.32
295 296 2.627945 GCCATCTGTCCGTGTATTTGA 58.372 47.619 0.00 0.00 0.00 2.69
296 297 2.609459 GCCATCTGTCCGTGTATTTGAG 59.391 50.000 0.00 0.00 0.00 3.02
297 298 3.678806 GCCATCTGTCCGTGTATTTGAGA 60.679 47.826 0.00 0.00 0.00 3.27
298 299 3.865745 CCATCTGTCCGTGTATTTGAGAC 59.134 47.826 0.00 0.00 0.00 3.36
299 300 3.587797 TCTGTCCGTGTATTTGAGACC 57.412 47.619 0.00 0.00 0.00 3.85
300 301 2.094906 TCTGTCCGTGTATTTGAGACCG 60.095 50.000 0.00 0.00 0.00 4.79
301 302 1.067425 TGTCCGTGTATTTGAGACCGG 60.067 52.381 0.00 0.00 34.13 5.28
302 303 1.067354 GTCCGTGTATTTGAGACCGGT 60.067 52.381 6.92 6.92 34.34 5.28
303 304 1.619827 TCCGTGTATTTGAGACCGGTT 59.380 47.619 9.42 0.00 34.34 4.44
304 305 2.824936 TCCGTGTATTTGAGACCGGTTA 59.175 45.455 9.42 0.00 34.34 2.85
305 306 3.119388 TCCGTGTATTTGAGACCGGTTAG 60.119 47.826 9.42 0.00 34.34 2.34
306 307 3.119388 CCGTGTATTTGAGACCGGTTAGA 60.119 47.826 9.42 0.00 0.00 2.10
307 308 4.103357 CGTGTATTTGAGACCGGTTAGAG 58.897 47.826 9.42 0.00 0.00 2.43
308 309 4.430908 GTGTATTTGAGACCGGTTAGAGG 58.569 47.826 9.42 0.00 0.00 3.69
309 310 2.693267 ATTTGAGACCGGTTAGAGGC 57.307 50.000 9.42 0.00 0.00 4.70
310 311 0.245539 TTTGAGACCGGTTAGAGGCG 59.754 55.000 9.42 0.00 0.00 5.52
311 312 0.609957 TTGAGACCGGTTAGAGGCGA 60.610 55.000 9.42 0.00 0.00 5.54
312 313 1.310933 TGAGACCGGTTAGAGGCGAC 61.311 60.000 9.42 0.00 0.00 5.19
314 315 1.139095 GACCGGTTAGAGGCGACTG 59.861 63.158 9.42 0.00 44.43 3.51
315 316 2.280823 GACCGGTTAGAGGCGACTGG 62.281 65.000 9.42 0.00 44.43 4.00
316 317 2.494918 CGGTTAGAGGCGACTGGG 59.505 66.667 0.00 0.00 44.43 4.45
317 318 2.348888 CGGTTAGAGGCGACTGGGT 61.349 63.158 0.00 0.00 44.43 4.51
318 319 1.885163 CGGTTAGAGGCGACTGGGTT 61.885 60.000 0.00 0.00 44.43 4.11
319 320 0.323957 GGTTAGAGGCGACTGGGTTT 59.676 55.000 0.00 0.00 44.43 3.27
320 321 1.551883 GGTTAGAGGCGACTGGGTTTA 59.448 52.381 0.00 0.00 44.43 2.01
321 322 2.418334 GGTTAGAGGCGACTGGGTTTAG 60.418 54.545 0.00 0.00 44.43 1.85
322 323 2.494870 GTTAGAGGCGACTGGGTTTAGA 59.505 50.000 0.00 0.00 44.43 2.10
323 324 1.867363 AGAGGCGACTGGGTTTAGAT 58.133 50.000 0.00 0.00 44.43 1.98
324 325 1.482593 AGAGGCGACTGGGTTTAGATG 59.517 52.381 0.00 0.00 44.43 2.90
325 326 0.107654 AGGCGACTGGGTTTAGATGC 60.108 55.000 0.00 0.00 41.13 3.91
326 327 0.392461 GGCGACTGGGTTTAGATGCA 60.392 55.000 0.00 0.00 0.00 3.96
327 328 1.009829 GCGACTGGGTTTAGATGCAG 58.990 55.000 0.00 0.00 0.00 4.41
328 329 1.405526 GCGACTGGGTTTAGATGCAGA 60.406 52.381 0.00 0.00 0.00 4.26
329 330 2.544685 CGACTGGGTTTAGATGCAGAG 58.455 52.381 0.00 0.00 0.00 3.35
330 331 2.093973 CGACTGGGTTTAGATGCAGAGT 60.094 50.000 0.00 0.00 0.00 3.24
331 332 3.265791 GACTGGGTTTAGATGCAGAGTG 58.734 50.000 0.00 0.00 0.00 3.51
332 333 2.012673 CTGGGTTTAGATGCAGAGTGC 58.987 52.381 0.00 0.00 45.29 4.40
333 334 1.630369 TGGGTTTAGATGCAGAGTGCT 59.370 47.619 0.00 0.00 45.31 4.40
334 335 2.012673 GGGTTTAGATGCAGAGTGCTG 58.987 52.381 0.00 0.00 45.31 4.41
342 343 2.124403 CAGAGTGCTGCCCCATCC 60.124 66.667 0.00 0.00 34.95 3.51
343 344 3.790437 AGAGTGCTGCCCCATCCG 61.790 66.667 0.00 0.00 0.00 4.18
344 345 3.785859 GAGTGCTGCCCCATCCGA 61.786 66.667 0.00 0.00 0.00 4.55
345 346 3.329542 GAGTGCTGCCCCATCCGAA 62.330 63.158 0.00 0.00 0.00 4.30
346 347 2.361104 GTGCTGCCCCATCCGAAA 60.361 61.111 0.00 0.00 0.00 3.46
347 348 2.045045 TGCTGCCCCATCCGAAAG 60.045 61.111 0.00 0.00 0.00 2.62
348 349 2.044946 GCTGCCCCATCCGAAAGT 60.045 61.111 0.00 0.00 0.00 2.66
349 350 2.115291 GCTGCCCCATCCGAAAGTC 61.115 63.158 0.00 0.00 0.00 3.01
350 351 1.815421 CTGCCCCATCCGAAAGTCG 60.815 63.158 0.00 0.00 40.07 4.18
360 361 2.836944 CGAAAGTCGGTTTCCCTCC 58.163 57.895 5.82 0.00 41.53 4.30
361 362 0.320697 CGAAAGTCGGTTTCCCTCCT 59.679 55.000 5.82 0.00 41.53 3.69
362 363 1.672145 CGAAAGTCGGTTTCCCTCCTC 60.672 57.143 5.82 0.00 41.53 3.71
408 409 1.443540 GTGAATCGTATTCGCTCGTCG 59.556 52.381 11.46 0.00 40.15 5.12
432 433 1.237285 ACCCACTGAAATGACGCTGC 61.237 55.000 0.00 0.00 0.00 5.25
445 447 2.879907 GCTGCGTTGATGCCATGT 59.120 55.556 0.00 0.00 0.00 3.21
770 772 2.718731 CTCGCAGGACCGAGCTAG 59.281 66.667 9.77 5.07 46.69 3.42
776 778 1.808133 GCAGGACCGAGCTAGGAATTG 60.808 57.143 20.86 13.95 34.73 2.32
798 800 4.083324 TGTTCTGCTCGTGAATCATTTTCC 60.083 41.667 0.00 0.00 0.00 3.13
816 818 1.294780 CTCAGGGAGGTGTCTGCAC 59.705 63.158 0.00 0.00 44.53 4.57
1406 1416 9.119329 GATTAAGCTACGTAGTTCATCATGTAG 57.881 37.037 22.98 0.00 37.78 2.74
1435 1445 2.500369 GCGCGCACATGAACACAG 60.500 61.111 29.10 0.00 0.00 3.66
1548 1563 1.214373 GGTGTGCCAATTGTTGTGCG 61.214 55.000 4.43 0.00 32.00 5.34
1688 1703 9.683069 GCAATGCTGCTTAATTGTATTATAAGT 57.317 29.630 11.35 0.00 45.74 2.24
2100 2115 4.822026 GGTACAGTAAGCACATTCTCAGT 58.178 43.478 0.00 0.00 0.00 3.41
2101 2116 5.238583 GGTACAGTAAGCACATTCTCAGTT 58.761 41.667 0.00 0.00 0.00 3.16
2102 2117 5.701290 GGTACAGTAAGCACATTCTCAGTTT 59.299 40.000 0.00 0.00 0.00 2.66
2103 2118 6.204882 GGTACAGTAAGCACATTCTCAGTTTT 59.795 38.462 0.00 0.00 0.00 2.43
2104 2119 6.305693 ACAGTAAGCACATTCTCAGTTTTC 57.694 37.500 0.00 0.00 0.00 2.29
2105 2120 5.822519 ACAGTAAGCACATTCTCAGTTTTCA 59.177 36.000 0.00 0.00 0.00 2.69
2106 2121 6.138761 CAGTAAGCACATTCTCAGTTTTCAC 58.861 40.000 0.00 0.00 0.00 3.18
2107 2122 5.822519 AGTAAGCACATTCTCAGTTTTCACA 59.177 36.000 0.00 0.00 0.00 3.58
2108 2123 5.779529 AAGCACATTCTCAGTTTTCACAT 57.220 34.783 0.00 0.00 0.00 3.21
2109 2124 5.779529 AGCACATTCTCAGTTTTCACATT 57.220 34.783 0.00 0.00 0.00 2.71
2110 2125 6.152932 AGCACATTCTCAGTTTTCACATTT 57.847 33.333 0.00 0.00 0.00 2.32
2111 2126 7.275888 AGCACATTCTCAGTTTTCACATTTA 57.724 32.000 0.00 0.00 0.00 1.40
2112 2127 7.141363 AGCACATTCTCAGTTTTCACATTTAC 58.859 34.615 0.00 0.00 0.00 2.01
2113 2128 6.917477 GCACATTCTCAGTTTTCACATTTACA 59.083 34.615 0.00 0.00 0.00 2.41
2114 2129 7.434897 GCACATTCTCAGTTTTCACATTTACAA 59.565 33.333 0.00 0.00 0.00 2.41
2115 2130 8.745837 CACATTCTCAGTTTTCACATTTACAAC 58.254 33.333 0.00 0.00 0.00 3.32
2116 2131 7.920682 ACATTCTCAGTTTTCACATTTACAACC 59.079 33.333 0.00 0.00 0.00 3.77
2117 2132 6.385649 TCTCAGTTTTCACATTTACAACCC 57.614 37.500 0.00 0.00 0.00 4.11
2118 2133 6.126409 TCTCAGTTTTCACATTTACAACCCT 58.874 36.000 0.00 0.00 0.00 4.34
2119 2134 6.605594 TCTCAGTTTTCACATTTACAACCCTT 59.394 34.615 0.00 0.00 0.00 3.95
2120 2135 7.123547 TCTCAGTTTTCACATTTACAACCCTTT 59.876 33.333 0.00 0.00 0.00 3.11
2121 2136 8.294954 TCAGTTTTCACATTTACAACCCTTTA 57.705 30.769 0.00 0.00 0.00 1.85
2122 2137 8.919145 TCAGTTTTCACATTTACAACCCTTTAT 58.081 29.630 0.00 0.00 0.00 1.40
2129 2144 9.634021 TCACATTTACAACCCTTTATATATGCA 57.366 29.630 0.00 0.00 0.00 3.96
2149 2164 9.722184 ATATGCATCTCATATATAGCACATTCC 57.278 33.333 0.19 0.00 44.38 3.01
2150 2165 7.191593 TGCATCTCATATATAGCACATTCCT 57.808 36.000 0.00 0.00 0.00 3.36
2151 2166 8.310122 TGCATCTCATATATAGCACATTCCTA 57.690 34.615 0.00 0.00 0.00 2.94
2152 2167 8.200120 TGCATCTCATATATAGCACATTCCTAC 58.800 37.037 0.00 0.00 0.00 3.18
2153 2168 7.380870 GCATCTCATATATAGCACATTCCTACG 59.619 40.741 0.00 0.00 0.00 3.51
2154 2169 8.624776 CATCTCATATATAGCACATTCCTACGA 58.375 37.037 0.00 0.00 0.00 3.43
2155 2170 8.753497 TCTCATATATAGCACATTCCTACGAT 57.247 34.615 0.00 0.00 0.00 3.73
2156 2171 8.841300 TCTCATATATAGCACATTCCTACGATC 58.159 37.037 0.00 0.00 0.00 3.69
2157 2172 8.519799 TCATATATAGCACATTCCTACGATCA 57.480 34.615 0.00 0.00 0.00 2.92
2158 2173 8.966868 TCATATATAGCACATTCCTACGATCAA 58.033 33.333 0.00 0.00 0.00 2.57
2159 2174 9.025020 CATATATAGCACATTCCTACGATCAAC 57.975 37.037 0.00 0.00 0.00 3.18
2160 2175 3.610040 AGCACATTCCTACGATCAACA 57.390 42.857 0.00 0.00 0.00 3.33
2161 2176 3.262420 AGCACATTCCTACGATCAACAC 58.738 45.455 0.00 0.00 0.00 3.32
2162 2177 2.351726 GCACATTCCTACGATCAACACC 59.648 50.000 0.00 0.00 0.00 4.16
2163 2178 3.861840 CACATTCCTACGATCAACACCT 58.138 45.455 0.00 0.00 0.00 4.00
2164 2179 4.253685 CACATTCCTACGATCAACACCTT 58.746 43.478 0.00 0.00 0.00 3.50
2165 2180 4.695455 CACATTCCTACGATCAACACCTTT 59.305 41.667 0.00 0.00 0.00 3.11
2166 2181 5.181245 CACATTCCTACGATCAACACCTTTT 59.819 40.000 0.00 0.00 0.00 2.27
2167 2182 5.768164 ACATTCCTACGATCAACACCTTTTT 59.232 36.000 0.00 0.00 0.00 1.94
2185 2200 1.170442 TTTTCGAAAAGGGGGATCGC 58.830 50.000 19.08 0.06 36.56 4.58
2186 2201 0.678684 TTTCGAAAAGGGGGATCGCC 60.679 55.000 20.31 20.31 36.56 5.54
2202 2217 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2203 2218 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
2217 2232 1.797046 CATCAGAGTGATGCATACGGC 59.203 52.381 0.00 0.00 46.37 5.68
2218 2233 0.104855 TCAGAGTGATGCATACGGCC 59.895 55.000 0.00 0.00 43.89 6.13
2219 2234 0.179076 CAGAGTGATGCATACGGCCA 60.179 55.000 2.24 0.00 43.89 5.36
2220 2235 0.761187 AGAGTGATGCATACGGCCAT 59.239 50.000 2.24 0.00 43.89 4.40
2221 2236 1.151668 GAGTGATGCATACGGCCATC 58.848 55.000 2.24 0.00 43.89 3.51
2222 2237 0.761187 AGTGATGCATACGGCCATCT 59.239 50.000 2.24 0.00 43.89 2.90
2223 2238 1.141657 AGTGATGCATACGGCCATCTT 59.858 47.619 2.24 0.00 43.89 2.40
2224 2239 2.368548 AGTGATGCATACGGCCATCTTA 59.631 45.455 2.24 0.00 43.89 2.10
2225 2240 3.008375 AGTGATGCATACGGCCATCTTAT 59.992 43.478 2.24 0.00 43.89 1.73
2226 2241 3.753272 GTGATGCATACGGCCATCTTATT 59.247 43.478 2.24 0.00 43.89 1.40
2227 2242 4.935205 GTGATGCATACGGCCATCTTATTA 59.065 41.667 2.24 0.00 43.89 0.98
2228 2243 5.411361 GTGATGCATACGGCCATCTTATTAA 59.589 40.000 2.24 0.00 43.89 1.40
2229 2244 5.411361 TGATGCATACGGCCATCTTATTAAC 59.589 40.000 2.24 0.00 43.89 2.01
2230 2245 3.743911 TGCATACGGCCATCTTATTAACG 59.256 43.478 2.24 0.00 43.89 3.18
2231 2246 3.991773 GCATACGGCCATCTTATTAACGA 59.008 43.478 2.24 0.00 36.11 3.85
2232 2247 4.449743 GCATACGGCCATCTTATTAACGAA 59.550 41.667 2.24 0.00 36.11 3.85
2233 2248 5.049954 GCATACGGCCATCTTATTAACGAAA 60.050 40.000 2.24 0.00 36.11 3.46
2234 2249 6.348213 GCATACGGCCATCTTATTAACGAAAT 60.348 38.462 2.24 0.00 36.11 2.17
2235 2250 7.148540 GCATACGGCCATCTTATTAACGAAATA 60.149 37.037 2.24 0.00 36.11 1.40
2236 2251 8.714179 CATACGGCCATCTTATTAACGAAATAA 58.286 33.333 2.24 0.00 37.64 1.40
2237 2252 7.556733 ACGGCCATCTTATTAACGAAATAAA 57.443 32.000 2.24 0.00 39.10 1.40
2238 2253 7.987649 ACGGCCATCTTATTAACGAAATAAAA 58.012 30.769 2.24 0.00 39.10 1.52
2239 2254 8.126700 ACGGCCATCTTATTAACGAAATAAAAG 58.873 33.333 2.24 0.00 39.10 2.27
2240 2255 7.589954 CGGCCATCTTATTAACGAAATAAAAGG 59.410 37.037 2.24 3.24 39.10 3.11
2241 2256 8.410912 GGCCATCTTATTAACGAAATAAAAGGT 58.589 33.333 0.00 0.00 39.10 3.50
2242 2257 9.797556 GCCATCTTATTAACGAAATAAAAGGTT 57.202 29.630 0.00 0.00 39.10 3.50
2250 2265 8.859517 TTAACGAAATAAAAGGTTCCAACAAG 57.140 30.769 0.00 0.00 0.00 3.16
2251 2266 5.838529 ACGAAATAAAAGGTTCCAACAAGG 58.161 37.500 0.00 0.00 39.47 3.61
2252 2267 5.361571 ACGAAATAAAAGGTTCCAACAAGGT 59.638 36.000 0.00 0.00 39.02 3.50
2253 2268 6.127281 ACGAAATAAAAGGTTCCAACAAGGTT 60.127 34.615 0.00 0.00 39.02 3.50
2254 2269 6.419710 CGAAATAAAAGGTTCCAACAAGGTTC 59.580 38.462 0.00 0.00 39.02 3.62
2255 2270 5.801531 ATAAAAGGTTCCAACAAGGTTCC 57.198 39.130 0.00 0.00 39.02 3.62
2256 2271 2.838637 AAGGTTCCAACAAGGTTCCA 57.161 45.000 0.00 0.00 39.02 3.53
2257 2272 2.838637 AGGTTCCAACAAGGTTCCAA 57.161 45.000 0.00 0.00 39.02 3.53
2258 2273 3.328535 AGGTTCCAACAAGGTTCCAAT 57.671 42.857 0.00 0.00 39.02 3.16
2259 2274 2.965147 AGGTTCCAACAAGGTTCCAATG 59.035 45.455 0.00 0.00 39.02 2.82
2260 2275 2.698274 GGTTCCAACAAGGTTCCAATGT 59.302 45.455 0.00 0.00 39.02 2.71
2261 2276 3.243737 GGTTCCAACAAGGTTCCAATGTC 60.244 47.826 1.88 0.00 39.02 3.06
2262 2277 2.226330 TCCAACAAGGTTCCAATGTCG 58.774 47.619 1.88 0.00 39.02 4.35
2263 2278 1.335872 CCAACAAGGTTCCAATGTCGC 60.336 52.381 1.88 0.00 0.00 5.19
2264 2279 0.958822 AACAAGGTTCCAATGTCGCC 59.041 50.000 1.88 0.00 0.00 5.54
2265 2280 1.234615 ACAAGGTTCCAATGTCGCCG 61.235 55.000 0.00 0.00 0.00 6.46
2266 2281 0.953471 CAAGGTTCCAATGTCGCCGA 60.953 55.000 0.00 0.00 0.00 5.54
2267 2282 0.953960 AAGGTTCCAATGTCGCCGAC 60.954 55.000 10.96 10.96 0.00 4.79
2268 2283 1.375523 GGTTCCAATGTCGCCGACT 60.376 57.895 19.12 0.92 33.15 4.18
2269 2284 1.635663 GGTTCCAATGTCGCCGACTG 61.636 60.000 19.12 9.11 33.15 3.51
2270 2285 0.669318 GTTCCAATGTCGCCGACTGA 60.669 55.000 19.12 6.99 33.15 3.41
2271 2286 0.034198 TTCCAATGTCGCCGACTGAA 59.966 50.000 19.12 12.30 33.15 3.02
2272 2287 0.034198 TCCAATGTCGCCGACTGAAA 59.966 50.000 19.12 0.00 33.15 2.69
2273 2288 0.443869 CCAATGTCGCCGACTGAAAG 59.556 55.000 19.12 4.04 42.29 2.62
2274 2289 0.443869 CAATGTCGCCGACTGAAAGG 59.556 55.000 19.12 0.00 39.30 3.11
2275 2290 0.034896 AATGTCGCCGACTGAAAGGT 59.965 50.000 19.12 0.00 39.30 3.50
2276 2291 0.892755 ATGTCGCCGACTGAAAGGTA 59.107 50.000 19.12 0.00 39.30 3.08
2277 2292 0.675083 TGTCGCCGACTGAAAGGTAA 59.325 50.000 19.12 0.00 39.30 2.85
2278 2293 1.274167 TGTCGCCGACTGAAAGGTAAT 59.726 47.619 19.12 0.00 39.30 1.89
2279 2294 2.492881 TGTCGCCGACTGAAAGGTAATA 59.507 45.455 19.12 0.00 39.30 0.98
2280 2295 3.056678 TGTCGCCGACTGAAAGGTAATAA 60.057 43.478 19.12 0.00 39.30 1.40
2281 2296 3.928375 GTCGCCGACTGAAAGGTAATAAA 59.072 43.478 10.56 0.00 39.30 1.40
2282 2297 4.389687 GTCGCCGACTGAAAGGTAATAAAA 59.610 41.667 10.56 0.00 39.30 1.52
2283 2298 4.996122 TCGCCGACTGAAAGGTAATAAAAA 59.004 37.500 0.00 0.00 39.30 1.94
2284 2299 5.121142 TCGCCGACTGAAAGGTAATAAAAAG 59.879 40.000 0.00 0.00 39.30 2.27
2285 2300 5.121142 CGCCGACTGAAAGGTAATAAAAAGA 59.879 40.000 0.00 0.00 39.30 2.52
2286 2301 6.312487 GCCGACTGAAAGGTAATAAAAAGAC 58.688 40.000 0.00 0.00 39.30 3.01
2287 2302 6.072893 GCCGACTGAAAGGTAATAAAAAGACA 60.073 38.462 0.00 0.00 39.30 3.41
2288 2303 7.519002 CCGACTGAAAGGTAATAAAAAGACAG 58.481 38.462 0.00 0.00 39.30 3.51
2289 2304 7.015877 CGACTGAAAGGTAATAAAAAGACAGC 58.984 38.462 0.00 0.00 39.30 4.40
2290 2305 7.095187 CGACTGAAAGGTAATAAAAAGACAGCT 60.095 37.037 0.00 0.00 39.30 4.24
2291 2306 8.100508 ACTGAAAGGTAATAAAAAGACAGCTC 57.899 34.615 0.00 0.00 39.30 4.09
2292 2307 7.719633 ACTGAAAGGTAATAAAAAGACAGCTCA 59.280 33.333 0.00 0.00 39.30 4.26
2293 2308 7.871853 TGAAAGGTAATAAAAAGACAGCTCAC 58.128 34.615 0.00 0.00 0.00 3.51
2294 2309 7.500892 TGAAAGGTAATAAAAAGACAGCTCACA 59.499 33.333 0.00 0.00 0.00 3.58
2295 2310 6.803154 AGGTAATAAAAAGACAGCTCACAC 57.197 37.500 0.00 0.00 0.00 3.82
2296 2311 6.296026 AGGTAATAAAAAGACAGCTCACACA 58.704 36.000 0.00 0.00 0.00 3.72
2297 2312 6.428159 AGGTAATAAAAAGACAGCTCACACAG 59.572 38.462 0.00 0.00 0.00 3.66
2298 2313 6.426937 GGTAATAAAAAGACAGCTCACACAGA 59.573 38.462 0.00 0.00 0.00 3.41
2309 2324 2.615869 CTCACACAGAGCTAAAGAGGC 58.384 52.381 0.00 0.00 37.59 4.70
2310 2325 2.233431 CTCACACAGAGCTAAAGAGGCT 59.767 50.000 0.00 0.00 43.26 4.58
2311 2326 3.431415 TCACACAGAGCTAAAGAGGCTA 58.569 45.455 0.00 0.00 40.40 3.93
2312 2327 3.445450 TCACACAGAGCTAAAGAGGCTAG 59.555 47.826 0.00 0.00 40.40 3.42
2313 2328 3.445450 CACACAGAGCTAAAGAGGCTAGA 59.555 47.826 0.00 0.00 40.40 2.43
2314 2329 4.081972 CACACAGAGCTAAAGAGGCTAGAA 60.082 45.833 0.00 0.00 40.40 2.10
2315 2330 4.528596 ACACAGAGCTAAAGAGGCTAGAAA 59.471 41.667 0.00 0.00 40.40 2.52
2316 2331 4.867608 CACAGAGCTAAAGAGGCTAGAAAC 59.132 45.833 0.00 0.00 40.40 2.78
2317 2332 4.528596 ACAGAGCTAAAGAGGCTAGAAACA 59.471 41.667 0.00 0.00 40.40 2.83
2318 2333 4.867608 CAGAGCTAAAGAGGCTAGAAACAC 59.132 45.833 0.00 0.00 40.40 3.32
2319 2334 4.528596 AGAGCTAAAGAGGCTAGAAACACA 59.471 41.667 0.00 0.00 40.40 3.72
2320 2335 4.826556 AGCTAAAGAGGCTAGAAACACAG 58.173 43.478 0.00 0.00 38.36 3.66
2321 2336 4.528596 AGCTAAAGAGGCTAGAAACACAGA 59.471 41.667 0.00 0.00 38.36 3.41
2322 2337 4.627900 GCTAAAGAGGCTAGAAACACAGAC 59.372 45.833 0.00 0.00 0.00 3.51
2323 2338 4.965200 AAAGAGGCTAGAAACACAGACT 57.035 40.909 0.00 0.00 30.85 3.24
2324 2339 6.350277 GCTAAAGAGGCTAGAAACACAGACTA 60.350 42.308 0.00 0.00 27.26 2.59
2325 2340 5.652994 AAGAGGCTAGAAACACAGACTAG 57.347 43.478 0.00 0.00 37.32 2.57
2331 2346 5.392767 CTAGAAACACAGACTAGCCAAGA 57.607 43.478 0.00 0.00 0.00 3.02
2332 2347 4.899352 AGAAACACAGACTAGCCAAGAT 57.101 40.909 0.00 0.00 0.00 2.40
2333 2348 7.101652 CTAGAAACACAGACTAGCCAAGATA 57.898 40.000 0.00 0.00 0.00 1.98
2334 2349 6.360370 AGAAACACAGACTAGCCAAGATAA 57.640 37.500 0.00 0.00 0.00 1.75
2335 2350 6.402222 AGAAACACAGACTAGCCAAGATAAG 58.598 40.000 0.00 0.00 0.00 1.73
2336 2351 6.211584 AGAAACACAGACTAGCCAAGATAAGA 59.788 38.462 0.00 0.00 0.00 2.10
2337 2352 5.331876 ACACAGACTAGCCAAGATAAGAC 57.668 43.478 0.00 0.00 0.00 3.01
2338 2353 4.142359 ACACAGACTAGCCAAGATAAGACG 60.142 45.833 0.00 0.00 0.00 4.18
2339 2354 3.181485 ACAGACTAGCCAAGATAAGACGC 60.181 47.826 0.00 0.00 0.00 5.19
2340 2355 2.362717 AGACTAGCCAAGATAAGACGCC 59.637 50.000 0.00 0.00 0.00 5.68
2341 2356 2.100916 GACTAGCCAAGATAAGACGCCA 59.899 50.000 0.00 0.00 0.00 5.69
2342 2357 2.159085 ACTAGCCAAGATAAGACGCCAC 60.159 50.000 0.00 0.00 0.00 5.01
2343 2358 0.613260 AGCCAAGATAAGACGCCACA 59.387 50.000 0.00 0.00 0.00 4.17
2344 2359 1.003118 AGCCAAGATAAGACGCCACAA 59.997 47.619 0.00 0.00 0.00 3.33
2345 2360 1.130561 GCCAAGATAAGACGCCACAAC 59.869 52.381 0.00 0.00 0.00 3.32
2346 2361 1.737793 CCAAGATAAGACGCCACAACC 59.262 52.381 0.00 0.00 0.00 3.77
2347 2362 1.393539 CAAGATAAGACGCCACAACCG 59.606 52.381 0.00 0.00 0.00 4.44
2348 2363 0.108329 AGATAAGACGCCACAACCGG 60.108 55.000 0.00 0.00 0.00 5.28
2356 2371 2.033448 CCACAACCGGCTGGCTAA 59.967 61.111 12.89 0.00 39.70 3.09
2357 2372 1.602323 CCACAACCGGCTGGCTAAA 60.602 57.895 12.89 0.00 39.70 1.85
2358 2373 1.586154 CCACAACCGGCTGGCTAAAG 61.586 60.000 12.89 0.00 39.70 1.85
2359 2374 0.605319 CACAACCGGCTGGCTAAAGA 60.605 55.000 12.89 0.00 39.70 2.52
2360 2375 0.328258 ACAACCGGCTGGCTAAAGAT 59.672 50.000 12.89 0.00 39.70 2.40
2361 2376 1.557832 ACAACCGGCTGGCTAAAGATA 59.442 47.619 12.89 0.00 39.70 1.98
2362 2377 2.213499 CAACCGGCTGGCTAAAGATAG 58.787 52.381 12.89 0.00 39.70 2.08
2363 2378 1.789523 ACCGGCTGGCTAAAGATAGA 58.210 50.000 12.89 0.00 39.70 1.98
2364 2379 2.330216 ACCGGCTGGCTAAAGATAGAT 58.670 47.619 12.89 0.00 39.70 1.98
2365 2380 3.507411 ACCGGCTGGCTAAAGATAGATA 58.493 45.455 12.89 0.00 39.70 1.98
2366 2381 3.511934 ACCGGCTGGCTAAAGATAGATAG 59.488 47.826 12.89 0.00 39.70 2.08
2367 2382 3.764434 CCGGCTGGCTAAAGATAGATAGA 59.236 47.826 0.00 0.00 0.00 1.98
2368 2383 4.404073 CCGGCTGGCTAAAGATAGATAGAT 59.596 45.833 0.00 0.00 0.00 1.98
2369 2384 5.594725 CCGGCTGGCTAAAGATAGATAGATA 59.405 44.000 0.00 0.00 0.00 1.98
2370 2385 6.096987 CCGGCTGGCTAAAGATAGATAGATAA 59.903 42.308 0.00 0.00 0.00 1.75
2371 2386 7.363880 CCGGCTGGCTAAAGATAGATAGATAAA 60.364 40.741 0.00 0.00 0.00 1.40
2372 2387 7.489757 CGGCTGGCTAAAGATAGATAGATAAAC 59.510 40.741 0.00 0.00 0.00 2.01
2373 2388 8.536175 GGCTGGCTAAAGATAGATAGATAAACT 58.464 37.037 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.833287 TCCAGCTAGCAGCCTAAAGG 59.167 55.000 18.83 5.44 43.77 3.11
12 13 1.809651 GCTCCAGCTAGCAGCCTAAAG 60.810 57.143 18.83 5.32 43.77 1.85
13 14 0.179000 GCTCCAGCTAGCAGCCTAAA 59.821 55.000 18.83 0.00 43.77 1.85
14 15 1.826024 GCTCCAGCTAGCAGCCTAA 59.174 57.895 18.83 0.00 43.77 2.69
15 16 3.543537 GCTCCAGCTAGCAGCCTA 58.456 61.111 18.83 0.00 43.77 3.93
21 22 0.739112 GTGACACTGCTCCAGCTAGC 60.739 60.000 6.62 6.62 43.08 3.42
22 23 0.605083 TGTGACACTGCTCCAGCTAG 59.395 55.000 7.20 0.00 42.66 3.42
23 24 0.318441 GTGTGACACTGCTCCAGCTA 59.682 55.000 8.76 0.00 42.66 3.32
24 25 1.070445 GTGTGACACTGCTCCAGCT 59.930 57.895 8.76 0.00 42.66 4.24
25 26 2.313172 CGTGTGACACTGCTCCAGC 61.313 63.158 14.42 0.00 42.50 4.85
26 27 0.941463 GTCGTGTGACACTGCTCCAG 60.941 60.000 14.42 0.00 44.82 3.86
27 28 1.067416 GTCGTGTGACACTGCTCCA 59.933 57.895 14.42 0.00 44.82 3.86
28 29 2.016704 CGTCGTGTGACACTGCTCC 61.017 63.158 14.42 0.00 45.80 4.70
29 30 0.870307 AACGTCGTGTGACACTGCTC 60.870 55.000 14.42 0.83 45.80 4.26
30 31 0.870307 GAACGTCGTGTGACACTGCT 60.870 55.000 14.42 0.00 45.80 4.24
31 32 1.143373 TGAACGTCGTGTGACACTGC 61.143 55.000 14.42 5.32 45.80 4.40
32 33 0.570734 GTGAACGTCGTGTGACACTG 59.429 55.000 14.42 7.62 45.80 3.66
33 34 0.171679 TGTGAACGTCGTGTGACACT 59.828 50.000 14.42 0.00 45.80 3.55
34 35 0.296642 GTGTGAACGTCGTGTGACAC 59.703 55.000 5.47 5.47 45.80 3.67
35 36 0.109226 TGTGTGAACGTCGTGTGACA 60.109 50.000 0.00 0.00 45.80 3.58
36 37 0.296642 GTGTGTGAACGTCGTGTGAC 59.703 55.000 0.00 0.00 41.91 3.67
37 38 0.802994 GGTGTGTGAACGTCGTGTGA 60.803 55.000 0.00 0.00 0.00 3.58
38 39 0.804544 AGGTGTGTGAACGTCGTGTG 60.805 55.000 0.00 0.00 0.00 3.82
39 40 0.108520 AAGGTGTGTGAACGTCGTGT 60.109 50.000 0.00 0.00 0.00 4.49
40 41 0.300491 CAAGGTGTGTGAACGTCGTG 59.700 55.000 0.00 0.00 0.00 4.35
41 42 0.808453 CCAAGGTGTGTGAACGTCGT 60.808 55.000 0.00 0.00 0.00 4.34
42 43 0.528901 TCCAAGGTGTGTGAACGTCG 60.529 55.000 0.00 0.00 0.00 5.12
43 44 1.217882 CTCCAAGGTGTGTGAACGTC 58.782 55.000 0.00 0.00 0.00 4.34
44 45 0.179056 CCTCCAAGGTGTGTGAACGT 60.179 55.000 0.00 0.00 0.00 3.99
45 46 0.105964 TCCTCCAAGGTGTGTGAACG 59.894 55.000 0.00 0.00 36.53 3.95
46 47 1.416401 TCTCCTCCAAGGTGTGTGAAC 59.584 52.381 0.00 0.00 36.53 3.18
47 48 1.801242 TCTCCTCCAAGGTGTGTGAA 58.199 50.000 0.00 0.00 36.53 3.18
48 49 1.801242 TTCTCCTCCAAGGTGTGTGA 58.199 50.000 0.00 0.00 36.53 3.58
49 50 2.616510 GGATTCTCCTCCAAGGTGTGTG 60.617 54.545 0.00 0.00 36.53 3.82
50 51 1.630878 GGATTCTCCTCCAAGGTGTGT 59.369 52.381 0.00 0.00 36.53 3.72
51 52 1.065126 GGGATTCTCCTCCAAGGTGTG 60.065 57.143 0.00 0.00 36.57 3.82
52 53 1.290134 GGGATTCTCCTCCAAGGTGT 58.710 55.000 0.00 0.00 36.57 4.16
53 54 1.065126 GTGGGATTCTCCTCCAAGGTG 60.065 57.143 0.00 0.00 36.57 4.00
54 55 1.203492 AGTGGGATTCTCCTCCAAGGT 60.203 52.381 0.00 0.00 36.57 3.50
55 56 1.211457 CAGTGGGATTCTCCTCCAAGG 59.789 57.143 0.00 0.00 36.57 3.61
56 57 1.211457 CCAGTGGGATTCTCCTCCAAG 59.789 57.143 0.00 0.00 36.57 3.61
57 58 1.203428 TCCAGTGGGATTCTCCTCCAA 60.203 52.381 9.92 0.00 38.64 3.53
58 59 0.417437 TCCAGTGGGATTCTCCTCCA 59.583 55.000 9.92 0.00 38.64 3.86
59 60 3.324246 TCCAGTGGGATTCTCCTCC 57.676 57.895 9.92 0.00 38.64 4.30
71 72 1.888512 CAGAAACCCAACCATCCAGTG 59.111 52.381 0.00 0.00 0.00 3.66
72 73 1.780309 TCAGAAACCCAACCATCCAGT 59.220 47.619 0.00 0.00 0.00 4.00
73 74 2.162681 GTCAGAAACCCAACCATCCAG 58.837 52.381 0.00 0.00 0.00 3.86
74 75 1.203001 GGTCAGAAACCCAACCATCCA 60.203 52.381 0.00 0.00 42.85 3.41
75 76 1.545841 GGTCAGAAACCCAACCATCC 58.454 55.000 0.00 0.00 42.85 3.51
89 90 4.118410 CTCGAAATCATCCTGAAGGTCAG 58.882 47.826 0.00 0.00 43.91 3.51
90 91 3.769300 TCTCGAAATCATCCTGAAGGTCA 59.231 43.478 0.00 0.00 36.34 4.02
91 92 4.116238 GTCTCGAAATCATCCTGAAGGTC 58.884 47.826 0.00 0.00 36.34 3.85
92 93 3.118592 GGTCTCGAAATCATCCTGAAGGT 60.119 47.826 0.00 0.00 36.34 3.50
93 94 3.462021 GGTCTCGAAATCATCCTGAAGG 58.538 50.000 0.00 0.00 0.00 3.46
94 95 3.462021 GGGTCTCGAAATCATCCTGAAG 58.538 50.000 0.00 0.00 0.00 3.02
95 96 2.159099 CGGGTCTCGAAATCATCCTGAA 60.159 50.000 0.00 0.00 42.43 3.02
96 97 1.409064 CGGGTCTCGAAATCATCCTGA 59.591 52.381 0.00 0.00 42.43 3.86
97 98 1.409064 TCGGGTCTCGAAATCATCCTG 59.591 52.381 0.00 0.00 45.86 3.86
98 99 1.776662 TCGGGTCTCGAAATCATCCT 58.223 50.000 0.00 0.00 45.86 3.24
128 129 4.634133 TGACACGCCCGTCACGTC 62.634 66.667 0.00 0.00 42.96 4.34
129 130 4.640855 CTGACACGCCCGTCACGT 62.641 66.667 0.00 0.00 46.42 4.49
133 134 3.755628 TAGCCTGACACGCCCGTC 61.756 66.667 0.00 0.00 36.40 4.79
134 135 4.065281 GTAGCCTGACACGCCCGT 62.065 66.667 0.00 0.00 0.00 5.28
152 153 0.603975 GAATATGAGACGGCCCAGGC 60.604 60.000 0.00 0.00 41.06 4.85
153 154 0.319900 CGAATATGAGACGGCCCAGG 60.320 60.000 0.00 0.00 0.00 4.45
154 155 0.389391 ACGAATATGAGACGGCCCAG 59.611 55.000 0.00 0.00 0.00 4.45
155 156 0.387929 GACGAATATGAGACGGCCCA 59.612 55.000 0.00 0.00 0.00 5.36
156 157 3.196613 GACGAATATGAGACGGCCC 57.803 57.895 0.00 0.00 0.00 5.80
158 159 3.637998 TTAGGACGAATATGAGACGGC 57.362 47.619 0.00 0.00 0.00 5.68
159 160 6.700081 TCAAATTTAGGACGAATATGAGACGG 59.300 38.462 0.00 0.00 0.00 4.79
160 161 7.435488 ACTCAAATTTAGGACGAATATGAGACG 59.565 37.037 6.01 0.00 36.25 4.18
161 162 8.649973 ACTCAAATTTAGGACGAATATGAGAC 57.350 34.615 6.01 0.00 36.25 3.36
162 163 9.098355 CAACTCAAATTTAGGACGAATATGAGA 57.902 33.333 6.01 0.00 36.25 3.27
163 164 8.883731 ACAACTCAAATTTAGGACGAATATGAG 58.116 33.333 0.00 0.00 38.14 2.90
164 165 8.786826 ACAACTCAAATTTAGGACGAATATGA 57.213 30.769 0.00 0.00 0.00 2.15
169 170 9.878667 TCATATACAACTCAAATTTAGGACGAA 57.121 29.630 0.00 0.00 0.00 3.85
170 171 9.529325 CTCATATACAACTCAAATTTAGGACGA 57.471 33.333 0.00 0.00 0.00 4.20
171 172 8.765219 CCTCATATACAACTCAAATTTAGGACG 58.235 37.037 0.00 0.00 0.00 4.79
172 173 9.057089 CCCTCATATACAACTCAAATTTAGGAC 57.943 37.037 0.00 0.00 0.00 3.85
173 174 8.998814 TCCCTCATATACAACTCAAATTTAGGA 58.001 33.333 0.00 0.00 0.00 2.94
174 175 9.799106 ATCCCTCATATACAACTCAAATTTAGG 57.201 33.333 0.00 0.00 0.00 2.69
176 177 9.066892 GCATCCCTCATATACAACTCAAATTTA 57.933 33.333 0.00 0.00 0.00 1.40
177 178 7.014615 GGCATCCCTCATATACAACTCAAATTT 59.985 37.037 0.00 0.00 0.00 1.82
178 179 6.491403 GGCATCCCTCATATACAACTCAAATT 59.509 38.462 0.00 0.00 0.00 1.82
179 180 6.006449 GGCATCCCTCATATACAACTCAAAT 58.994 40.000 0.00 0.00 0.00 2.32
180 181 5.104151 TGGCATCCCTCATATACAACTCAAA 60.104 40.000 0.00 0.00 0.00 2.69
181 182 4.411869 TGGCATCCCTCATATACAACTCAA 59.588 41.667 0.00 0.00 0.00 3.02
182 183 3.973305 TGGCATCCCTCATATACAACTCA 59.027 43.478 0.00 0.00 0.00 3.41
183 184 4.623932 TGGCATCCCTCATATACAACTC 57.376 45.455 0.00 0.00 0.00 3.01
184 185 5.073554 TGAATGGCATCCCTCATATACAACT 59.926 40.000 0.00 0.00 0.00 3.16
185 186 5.316167 TGAATGGCATCCCTCATATACAAC 58.684 41.667 0.00 0.00 0.00 3.32
186 187 5.581350 TGAATGGCATCCCTCATATACAA 57.419 39.130 0.00 0.00 0.00 2.41
187 188 5.316167 GTTGAATGGCATCCCTCATATACA 58.684 41.667 0.00 0.00 0.00 2.29
188 189 4.702131 GGTTGAATGGCATCCCTCATATAC 59.298 45.833 0.00 0.00 31.36 1.47
189 190 4.922206 GGTTGAATGGCATCCCTCATATA 58.078 43.478 0.00 0.00 31.36 0.86
190 191 3.771216 GGTTGAATGGCATCCCTCATAT 58.229 45.455 0.00 0.00 31.36 1.78
191 192 3.228188 GGTTGAATGGCATCCCTCATA 57.772 47.619 0.00 0.00 31.36 2.15
192 193 2.077687 GGTTGAATGGCATCCCTCAT 57.922 50.000 0.00 0.00 31.36 2.90
193 194 3.594453 GGTTGAATGGCATCCCTCA 57.406 52.632 0.00 0.00 31.36 3.86
197 198 1.106285 GTCTGGGTTGAATGGCATCC 58.894 55.000 0.00 0.00 35.92 3.51
198 199 1.838112 TGTCTGGGTTGAATGGCATC 58.162 50.000 0.00 0.00 0.00 3.91
199 200 2.537633 ATGTCTGGGTTGAATGGCAT 57.462 45.000 0.00 0.00 0.00 4.40
200 201 2.299582 CAAATGTCTGGGTTGAATGGCA 59.700 45.455 0.00 0.00 0.00 4.92
201 202 2.562298 TCAAATGTCTGGGTTGAATGGC 59.438 45.455 0.00 0.00 0.00 4.40
202 203 6.720112 ATATCAAATGTCTGGGTTGAATGG 57.280 37.500 0.00 0.00 35.07 3.16
203 204 8.681486 TCTATATCAAATGTCTGGGTTGAATG 57.319 34.615 0.00 0.00 35.07 2.67
204 205 9.872684 AATCTATATCAAATGTCTGGGTTGAAT 57.127 29.630 0.00 0.00 35.07 2.57
205 206 9.699410 AAATCTATATCAAATGTCTGGGTTGAA 57.301 29.630 0.00 0.00 35.07 2.69
206 207 9.123902 CAAATCTATATCAAATGTCTGGGTTGA 57.876 33.333 0.00 0.00 35.83 3.18
207 208 9.123902 TCAAATCTATATCAAATGTCTGGGTTG 57.876 33.333 0.00 0.00 0.00 3.77
208 209 9.347240 CTCAAATCTATATCAAATGTCTGGGTT 57.653 33.333 0.00 0.00 0.00 4.11
209 210 7.941238 CCTCAAATCTATATCAAATGTCTGGGT 59.059 37.037 0.00 0.00 0.00 4.51
210 211 7.941238 ACCTCAAATCTATATCAAATGTCTGGG 59.059 37.037 0.00 0.00 0.00 4.45
211 212 8.781196 CACCTCAAATCTATATCAAATGTCTGG 58.219 37.037 0.00 0.00 0.00 3.86
212 213 8.288208 GCACCTCAAATCTATATCAAATGTCTG 58.712 37.037 0.00 0.00 0.00 3.51
213 214 8.216423 AGCACCTCAAATCTATATCAAATGTCT 58.784 33.333 0.00 0.00 0.00 3.41
214 215 8.388484 AGCACCTCAAATCTATATCAAATGTC 57.612 34.615 0.00 0.00 0.00 3.06
215 216 7.172190 CGAGCACCTCAAATCTATATCAAATGT 59.828 37.037 0.00 0.00 0.00 2.71
216 217 7.386025 TCGAGCACCTCAAATCTATATCAAATG 59.614 37.037 0.00 0.00 0.00 2.32
217 218 7.445121 TCGAGCACCTCAAATCTATATCAAAT 58.555 34.615 0.00 0.00 0.00 2.32
218 219 6.816136 TCGAGCACCTCAAATCTATATCAAA 58.184 36.000 0.00 0.00 0.00 2.69
219 220 6.405278 TCGAGCACCTCAAATCTATATCAA 57.595 37.500 0.00 0.00 0.00 2.57
220 221 6.405278 TTCGAGCACCTCAAATCTATATCA 57.595 37.500 0.00 0.00 0.00 2.15
221 222 6.312426 CCATTCGAGCACCTCAAATCTATATC 59.688 42.308 0.00 0.00 0.00 1.63
222 223 6.169094 CCATTCGAGCACCTCAAATCTATAT 58.831 40.000 0.00 0.00 0.00 0.86
223 224 5.511373 CCCATTCGAGCACCTCAAATCTATA 60.511 44.000 0.00 0.00 0.00 1.31
224 225 4.384056 CCATTCGAGCACCTCAAATCTAT 58.616 43.478 0.00 0.00 0.00 1.98
225 226 3.432186 CCCATTCGAGCACCTCAAATCTA 60.432 47.826 0.00 0.00 0.00 1.98
226 227 2.636830 CCATTCGAGCACCTCAAATCT 58.363 47.619 0.00 0.00 0.00 2.40
227 228 1.672881 CCCATTCGAGCACCTCAAATC 59.327 52.381 0.00 0.00 0.00 2.17
228 229 1.004745 ACCCATTCGAGCACCTCAAAT 59.995 47.619 0.00 0.00 0.00 2.32
229 230 0.400213 ACCCATTCGAGCACCTCAAA 59.600 50.000 0.00 0.00 0.00 2.69
230 231 0.036388 GACCCATTCGAGCACCTCAA 60.036 55.000 0.00 0.00 0.00 3.02
231 232 1.596934 GACCCATTCGAGCACCTCA 59.403 57.895 0.00 0.00 0.00 3.86
232 233 4.522971 GACCCATTCGAGCACCTC 57.477 61.111 0.00 0.00 0.00 3.85
240 241 2.159435 GGTCAAAAATCCGACCCATTCG 60.159 50.000 0.00 0.00 45.03 3.34
241 242 3.503827 GGTCAAAAATCCGACCCATTC 57.496 47.619 0.00 0.00 45.03 2.67
249 250 1.196808 CACTGACCGGTCAAAAATCCG 59.803 52.381 35.36 24.23 45.42 4.18
250 251 2.225727 GTCACTGACCGGTCAAAAATCC 59.774 50.000 35.36 18.30 39.39 3.01
251 252 2.875933 TGTCACTGACCGGTCAAAAATC 59.124 45.455 35.36 23.58 39.39 2.17
252 253 2.878406 CTGTCACTGACCGGTCAAAAAT 59.122 45.455 35.36 19.54 39.39 1.82
253 254 2.285083 CTGTCACTGACCGGTCAAAAA 58.715 47.619 35.36 21.12 39.39 1.94
254 255 1.474320 CCTGTCACTGACCGGTCAAAA 60.474 52.381 35.36 21.46 39.39 2.44
255 256 0.105964 CCTGTCACTGACCGGTCAAA 59.894 55.000 35.36 21.81 39.39 2.69
256 257 1.745890 CCTGTCACTGACCGGTCAA 59.254 57.895 35.36 20.43 39.39 3.18
257 258 2.207229 CCCTGTCACTGACCGGTCA 61.207 63.158 34.13 34.13 35.60 4.02
258 259 2.657237 CCCTGTCACTGACCGGTC 59.343 66.667 28.17 28.17 35.60 4.79
259 260 3.626924 GCCCTGTCACTGACCGGT 61.627 66.667 6.92 6.92 35.60 5.28
260 261 4.394712 GGCCCTGTCACTGACCGG 62.395 72.222 11.73 11.73 36.82 5.28
261 262 2.859273 GATGGCCCTGTCACTGACCG 62.859 65.000 0.00 0.14 0.00 4.79
262 263 1.078143 GATGGCCCTGTCACTGACC 60.078 63.158 0.00 0.00 0.00 4.02
263 264 0.392193 CAGATGGCCCTGTCACTGAC 60.392 60.000 0.00 1.86 0.00 3.51
264 265 0.837691 ACAGATGGCCCTGTCACTGA 60.838 55.000 8.70 0.00 43.34 3.41
265 266 1.681666 ACAGATGGCCCTGTCACTG 59.318 57.895 8.70 7.42 43.34 3.66
266 267 4.239991 ACAGATGGCCCTGTCACT 57.760 55.556 8.70 0.00 43.34 3.41
271 272 1.613317 TACACGGACAGATGGCCCTG 61.613 60.000 0.00 3.41 41.34 4.45
272 273 0.691078 ATACACGGACAGATGGCCCT 60.691 55.000 0.00 0.00 41.34 5.19
273 274 0.180406 AATACACGGACAGATGGCCC 59.820 55.000 0.00 0.00 41.34 5.80
274 275 1.670811 CAAATACACGGACAGATGGCC 59.329 52.381 0.00 0.00 40.84 5.36
275 276 2.609459 CTCAAATACACGGACAGATGGC 59.391 50.000 0.00 0.00 0.00 4.40
276 277 3.865745 GTCTCAAATACACGGACAGATGG 59.134 47.826 0.00 0.00 0.00 3.51
277 278 3.865745 GGTCTCAAATACACGGACAGATG 59.134 47.826 0.00 0.00 0.00 2.90
278 279 3.428999 CGGTCTCAAATACACGGACAGAT 60.429 47.826 0.00 0.00 0.00 2.90
279 280 2.094906 CGGTCTCAAATACACGGACAGA 60.095 50.000 0.00 0.00 0.00 3.41
280 281 2.259618 CGGTCTCAAATACACGGACAG 58.740 52.381 0.00 0.00 0.00 3.51
281 282 1.067425 CCGGTCTCAAATACACGGACA 60.067 52.381 0.00 0.00 43.69 4.02
282 283 1.067354 ACCGGTCTCAAATACACGGAC 60.067 52.381 0.00 0.00 43.69 4.79
283 284 1.259609 ACCGGTCTCAAATACACGGA 58.740 50.000 0.00 0.00 43.69 4.69
284 285 2.088950 AACCGGTCTCAAATACACGG 57.911 50.000 8.04 0.00 46.16 4.94
285 286 4.100707 TCTAACCGGTCTCAAATACACG 57.899 45.455 8.04 0.00 0.00 4.49
286 287 4.430908 CCTCTAACCGGTCTCAAATACAC 58.569 47.826 8.04 0.00 0.00 2.90
287 288 3.118884 GCCTCTAACCGGTCTCAAATACA 60.119 47.826 8.04 0.00 0.00 2.29
288 289 3.455327 GCCTCTAACCGGTCTCAAATAC 58.545 50.000 8.04 0.00 0.00 1.89
289 290 2.100252 CGCCTCTAACCGGTCTCAAATA 59.900 50.000 8.04 0.00 0.00 1.40
290 291 1.134788 CGCCTCTAACCGGTCTCAAAT 60.135 52.381 8.04 0.00 0.00 2.32
291 292 0.245539 CGCCTCTAACCGGTCTCAAA 59.754 55.000 8.04 0.00 0.00 2.69
292 293 0.609957 TCGCCTCTAACCGGTCTCAA 60.610 55.000 8.04 0.00 0.00 3.02
293 294 1.001764 TCGCCTCTAACCGGTCTCA 60.002 57.895 8.04 0.00 0.00 3.27
294 295 1.031029 AGTCGCCTCTAACCGGTCTC 61.031 60.000 8.04 0.00 0.00 3.36
295 296 1.001145 AGTCGCCTCTAACCGGTCT 60.001 57.895 8.04 0.22 0.00 3.85
296 297 1.139095 CAGTCGCCTCTAACCGGTC 59.861 63.158 8.04 0.00 0.00 4.79
297 298 2.348888 CCAGTCGCCTCTAACCGGT 61.349 63.158 0.00 0.00 0.00 5.28
298 299 2.494918 CCAGTCGCCTCTAACCGG 59.505 66.667 0.00 0.00 0.00 5.28
299 300 1.885163 AACCCAGTCGCCTCTAACCG 61.885 60.000 0.00 0.00 0.00 4.44
300 301 0.323957 AAACCCAGTCGCCTCTAACC 59.676 55.000 0.00 0.00 0.00 2.85
301 302 2.494870 TCTAAACCCAGTCGCCTCTAAC 59.505 50.000 0.00 0.00 0.00 2.34
302 303 2.811410 TCTAAACCCAGTCGCCTCTAA 58.189 47.619 0.00 0.00 0.00 2.10
303 304 2.519771 TCTAAACCCAGTCGCCTCTA 57.480 50.000 0.00 0.00 0.00 2.43
304 305 1.482593 CATCTAAACCCAGTCGCCTCT 59.517 52.381 0.00 0.00 0.00 3.69
305 306 1.941325 CATCTAAACCCAGTCGCCTC 58.059 55.000 0.00 0.00 0.00 4.70
306 307 0.107654 GCATCTAAACCCAGTCGCCT 60.108 55.000 0.00 0.00 0.00 5.52
307 308 0.392461 TGCATCTAAACCCAGTCGCC 60.392 55.000 0.00 0.00 0.00 5.54
308 309 1.009829 CTGCATCTAAACCCAGTCGC 58.990 55.000 0.00 0.00 0.00 5.19
309 310 2.093973 ACTCTGCATCTAAACCCAGTCG 60.094 50.000 0.00 0.00 0.00 4.18
310 311 3.265791 CACTCTGCATCTAAACCCAGTC 58.734 50.000 0.00 0.00 0.00 3.51
311 312 2.616510 GCACTCTGCATCTAAACCCAGT 60.617 50.000 0.00 0.00 44.26 4.00
312 313 2.012673 GCACTCTGCATCTAAACCCAG 58.987 52.381 0.00 0.00 44.26 4.45
313 314 2.113860 GCACTCTGCATCTAAACCCA 57.886 50.000 0.00 0.00 44.26 4.51
325 326 2.124403 GGATGGGGCAGCACTCTG 60.124 66.667 0.00 0.00 43.16 3.35
326 327 3.790437 CGGATGGGGCAGCACTCT 61.790 66.667 0.00 0.00 0.00 3.24
327 328 2.819984 TTTCGGATGGGGCAGCACTC 62.820 60.000 0.00 0.00 0.00 3.51
328 329 2.826777 CTTTCGGATGGGGCAGCACT 62.827 60.000 0.00 0.00 0.00 4.40
329 330 2.361104 TTTCGGATGGGGCAGCAC 60.361 61.111 0.00 0.00 0.00 4.40
330 331 2.045045 CTTTCGGATGGGGCAGCA 60.045 61.111 0.00 0.00 0.00 4.41
331 332 2.044946 ACTTTCGGATGGGGCAGC 60.045 61.111 0.00 0.00 0.00 5.25
332 333 1.815421 CGACTTTCGGATGGGGCAG 60.815 63.158 0.00 0.00 36.00 4.85
333 334 2.267642 CGACTTTCGGATGGGGCA 59.732 61.111 0.00 0.00 36.00 5.36
351 352 0.252742 TGGGGAGAGAGGAGGGAAAC 60.253 60.000 0.00 0.00 0.00 2.78
352 353 0.043334 CTGGGGAGAGAGGAGGGAAA 59.957 60.000 0.00 0.00 0.00 3.13
353 354 0.855855 TCTGGGGAGAGAGGAGGGAA 60.856 60.000 0.00 0.00 0.00 3.97
354 355 1.230650 TCTGGGGAGAGAGGAGGGA 60.231 63.158 0.00 0.00 0.00 4.20
355 356 1.075600 GTCTGGGGAGAGAGGAGGG 60.076 68.421 0.00 0.00 0.00 4.30
356 357 1.454847 CGTCTGGGGAGAGAGGAGG 60.455 68.421 0.00 0.00 30.80 4.30
357 358 1.034838 CACGTCTGGGGAGAGAGGAG 61.035 65.000 0.00 0.00 33.08 3.69
358 359 1.000771 CACGTCTGGGGAGAGAGGA 60.001 63.158 0.00 0.00 33.08 3.71
359 360 2.716017 GCACGTCTGGGGAGAGAGG 61.716 68.421 0.00 0.00 34.63 3.69
360 361 1.680651 AGCACGTCTGGGGAGAGAG 60.681 63.158 0.00 0.00 0.00 3.20
361 362 1.979155 CAGCACGTCTGGGGAGAGA 60.979 63.158 7.01 0.00 39.15 3.10
362 363 2.575993 CAGCACGTCTGGGGAGAG 59.424 66.667 7.01 0.00 39.15 3.20
408 409 1.079503 GTCATTTCAGTGGGTCGCTC 58.920 55.000 0.00 0.00 0.00 5.03
418 419 0.512518 TCAACGCAGCGTCATTTCAG 59.487 50.000 23.22 5.68 39.99 3.02
432 433 2.100846 CCCTGACATGGCATCAACG 58.899 57.895 0.00 0.00 0.00 4.10
445 447 1.218047 CGATCGGTTTCTGCCCTGA 59.782 57.895 7.38 0.00 0.00 3.86
513 515 4.404098 GGGCCCGACGGTCAATGT 62.404 66.667 5.69 0.00 34.31 2.71
653 655 3.531934 ATGCGAAGATGACATGTCTCA 57.468 42.857 25.55 8.56 0.00 3.27
770 772 3.436704 TGATTCACGAGCAGAACAATTCC 59.563 43.478 0.00 0.00 0.00 3.01
776 778 4.154918 AGGAAAATGATTCACGAGCAGAAC 59.845 41.667 0.00 0.00 0.00 3.01
798 800 1.294780 GTGCAGACACCTCCCTGAG 59.705 63.158 0.00 0.00 41.21 3.35
1029 1031 3.363844 GACGAGGACCAGGCTGAGC 62.364 68.421 17.94 7.06 0.00 4.26
1431 1441 1.136529 CAGTCACGAATGAACGCTGTG 60.137 52.381 0.00 0.00 36.31 3.66
1435 1445 0.443869 ATGCAGTCACGAATGAACGC 59.556 50.000 0.00 0.00 36.31 4.84
1548 1563 0.859788 CCGCAACACACACGAAACAC 60.860 55.000 0.00 0.00 0.00 3.32
2078 2093 4.822026 ACTGAGAATGTGCTTACTGTACC 58.178 43.478 0.00 0.00 0.00 3.34
2079 2094 6.787085 AAACTGAGAATGTGCTTACTGTAC 57.213 37.500 0.00 0.00 0.00 2.90
2080 2095 6.989759 TGAAAACTGAGAATGTGCTTACTGTA 59.010 34.615 0.00 0.00 0.00 2.74
2081 2096 5.822519 TGAAAACTGAGAATGTGCTTACTGT 59.177 36.000 0.00 0.00 0.00 3.55
2082 2097 6.138761 GTGAAAACTGAGAATGTGCTTACTG 58.861 40.000 0.00 0.00 0.00 2.74
2083 2098 5.822519 TGTGAAAACTGAGAATGTGCTTACT 59.177 36.000 0.00 0.00 0.00 2.24
2084 2099 6.060028 TGTGAAAACTGAGAATGTGCTTAC 57.940 37.500 0.00 0.00 0.00 2.34
2085 2100 6.882610 ATGTGAAAACTGAGAATGTGCTTA 57.117 33.333 0.00 0.00 0.00 3.09
2086 2101 5.779529 ATGTGAAAACTGAGAATGTGCTT 57.220 34.783 0.00 0.00 0.00 3.91
2087 2102 5.779529 AATGTGAAAACTGAGAATGTGCT 57.220 34.783 0.00 0.00 0.00 4.40
2088 2103 6.917477 TGTAAATGTGAAAACTGAGAATGTGC 59.083 34.615 0.00 0.00 0.00 4.57
2089 2104 8.745837 GTTGTAAATGTGAAAACTGAGAATGTG 58.254 33.333 0.00 0.00 0.00 3.21
2090 2105 7.920682 GGTTGTAAATGTGAAAACTGAGAATGT 59.079 33.333 0.00 0.00 0.00 2.71
2091 2106 7.382218 GGGTTGTAAATGTGAAAACTGAGAATG 59.618 37.037 0.00 0.00 0.00 2.67
2092 2107 7.287696 AGGGTTGTAAATGTGAAAACTGAGAAT 59.712 33.333 0.00 0.00 0.00 2.40
2093 2108 6.605594 AGGGTTGTAAATGTGAAAACTGAGAA 59.394 34.615 0.00 0.00 0.00 2.87
2094 2109 6.126409 AGGGTTGTAAATGTGAAAACTGAGA 58.874 36.000 0.00 0.00 0.00 3.27
2095 2110 6.391227 AGGGTTGTAAATGTGAAAACTGAG 57.609 37.500 0.00 0.00 0.00 3.35
2096 2111 6.783708 AAGGGTTGTAAATGTGAAAACTGA 57.216 33.333 0.00 0.00 0.00 3.41
2103 2118 9.634021 TGCATATATAAAGGGTTGTAAATGTGA 57.366 29.630 0.00 0.00 0.00 3.58
2124 2139 8.931568 AGGAATGTGCTATATATGAGATGCATA 58.068 33.333 0.00 0.00 43.28 3.14
2125 2140 7.803131 AGGAATGTGCTATATATGAGATGCAT 58.197 34.615 0.00 0.00 41.08 3.96
2126 2141 7.191593 AGGAATGTGCTATATATGAGATGCA 57.808 36.000 0.00 0.00 0.00 3.96
2127 2142 7.380870 CGTAGGAATGTGCTATATATGAGATGC 59.619 40.741 0.00 0.00 0.00 3.91
2128 2143 8.624776 TCGTAGGAATGTGCTATATATGAGATG 58.375 37.037 0.00 0.00 0.00 2.90
2129 2144 8.753497 TCGTAGGAATGTGCTATATATGAGAT 57.247 34.615 0.00 0.00 0.00 2.75
2130 2145 8.753497 ATCGTAGGAATGTGCTATATATGAGA 57.247 34.615 0.00 0.00 0.00 3.27
2131 2146 8.624776 TGATCGTAGGAATGTGCTATATATGAG 58.375 37.037 0.00 0.00 0.00 2.90
2132 2147 8.519799 TGATCGTAGGAATGTGCTATATATGA 57.480 34.615 0.00 0.00 0.00 2.15
2133 2148 9.025020 GTTGATCGTAGGAATGTGCTATATATG 57.975 37.037 0.00 0.00 0.00 1.78
2134 2149 8.749354 TGTTGATCGTAGGAATGTGCTATATAT 58.251 33.333 0.00 0.00 0.00 0.86
2135 2150 8.027189 GTGTTGATCGTAGGAATGTGCTATATA 58.973 37.037 0.00 0.00 0.00 0.86
2136 2151 6.868864 GTGTTGATCGTAGGAATGTGCTATAT 59.131 38.462 0.00 0.00 0.00 0.86
2137 2152 6.213677 GTGTTGATCGTAGGAATGTGCTATA 58.786 40.000 0.00 0.00 0.00 1.31
2138 2153 5.050490 GTGTTGATCGTAGGAATGTGCTAT 58.950 41.667 0.00 0.00 0.00 2.97
2139 2154 4.430007 GTGTTGATCGTAGGAATGTGCTA 58.570 43.478 0.00 0.00 0.00 3.49
2140 2155 3.262420 GTGTTGATCGTAGGAATGTGCT 58.738 45.455 0.00 0.00 0.00 4.40
2141 2156 2.351726 GGTGTTGATCGTAGGAATGTGC 59.648 50.000 0.00 0.00 0.00 4.57
2142 2157 3.861840 AGGTGTTGATCGTAGGAATGTG 58.138 45.455 0.00 0.00 0.00 3.21
2143 2158 4.553330 AAGGTGTTGATCGTAGGAATGT 57.447 40.909 0.00 0.00 0.00 2.71
2144 2159 5.880054 AAAAGGTGTTGATCGTAGGAATG 57.120 39.130 0.00 0.00 0.00 2.67
2165 2180 1.542472 GCGATCCCCCTTTTCGAAAAA 59.458 47.619 22.67 9.34 34.92 1.94
2166 2181 1.170442 GCGATCCCCCTTTTCGAAAA 58.830 50.000 21.35 21.35 34.92 2.29
2167 2182 0.678684 GGCGATCCCCCTTTTCGAAA 60.679 55.000 6.47 6.47 34.92 3.46
2168 2183 1.078001 GGCGATCCCCCTTTTCGAA 60.078 57.895 0.00 0.00 34.92 3.71
2169 2184 2.587889 GGCGATCCCCCTTTTCGA 59.412 61.111 0.00 0.00 34.92 3.71
2185 2200 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2186 2201 3.473647 TCTGATGCAGAGGCCGGG 61.474 66.667 2.18 0.00 35.39 5.73
2198 2213 1.270518 GGCCGTATGCATCACTCTGAT 60.271 52.381 0.19 0.00 43.89 2.90
2199 2214 0.104855 GGCCGTATGCATCACTCTGA 59.895 55.000 0.19 0.00 43.89 3.27
2200 2215 0.179076 TGGCCGTATGCATCACTCTG 60.179 55.000 0.19 0.00 43.89 3.35
2201 2216 0.761187 ATGGCCGTATGCATCACTCT 59.239 50.000 0.19 0.00 43.89 3.24
2202 2217 1.151668 GATGGCCGTATGCATCACTC 58.848 55.000 0.19 0.00 43.89 3.51
2203 2218 0.761187 AGATGGCCGTATGCATCACT 59.239 50.000 0.19 0.00 43.89 3.41
2204 2219 1.597742 AAGATGGCCGTATGCATCAC 58.402 50.000 0.19 0.00 43.89 3.06
2205 2220 3.701205 ATAAGATGGCCGTATGCATCA 57.299 42.857 0.19 0.00 43.89 3.07
2206 2221 5.445939 CGTTAATAAGATGGCCGTATGCATC 60.446 44.000 0.19 0.00 43.89 3.91
2207 2222 4.391830 CGTTAATAAGATGGCCGTATGCAT 59.608 41.667 3.79 3.79 43.89 3.96
2208 2223 3.743911 CGTTAATAAGATGGCCGTATGCA 59.256 43.478 0.00 0.00 43.89 3.96
2209 2224 3.991773 TCGTTAATAAGATGGCCGTATGC 59.008 43.478 0.00 0.00 40.16 3.14
2210 2225 6.533819 TTTCGTTAATAAGATGGCCGTATG 57.466 37.500 0.00 0.00 0.00 2.39
2211 2226 8.836268 TTATTTCGTTAATAAGATGGCCGTAT 57.164 30.769 0.00 0.00 34.53 3.06
2212 2227 8.659925 TTTATTTCGTTAATAAGATGGCCGTA 57.340 30.769 0.00 0.00 39.29 4.02
2213 2228 7.556733 TTTATTTCGTTAATAAGATGGCCGT 57.443 32.000 0.00 0.00 39.29 5.68
2214 2229 7.589954 CCTTTTATTTCGTTAATAAGATGGCCG 59.410 37.037 0.00 0.00 39.29 6.13
2215 2230 8.410912 ACCTTTTATTTCGTTAATAAGATGGCC 58.589 33.333 0.00 0.00 39.29 5.36
2216 2231 9.797556 AACCTTTTATTTCGTTAATAAGATGGC 57.202 29.630 13.43 0.00 39.29 4.40
2224 2239 9.471084 CTTGTTGGAACCTTTTATTTCGTTAAT 57.529 29.630 0.00 0.00 0.00 1.40
2225 2240 7.921745 CCTTGTTGGAACCTTTTATTTCGTTAA 59.078 33.333 0.00 0.00 38.35 2.01
2226 2241 7.068470 ACCTTGTTGGAACCTTTTATTTCGTTA 59.932 33.333 0.00 0.00 39.71 3.18
2227 2242 6.127281 ACCTTGTTGGAACCTTTTATTTCGTT 60.127 34.615 0.00 0.00 39.71 3.85
2228 2243 5.361571 ACCTTGTTGGAACCTTTTATTTCGT 59.638 36.000 0.00 0.00 39.71 3.85
2229 2244 5.838529 ACCTTGTTGGAACCTTTTATTTCG 58.161 37.500 0.00 0.00 39.71 3.46
2230 2245 6.704493 GGAACCTTGTTGGAACCTTTTATTTC 59.296 38.462 0.00 0.00 39.71 2.17
2231 2246 6.157123 TGGAACCTTGTTGGAACCTTTTATTT 59.843 34.615 0.00 0.00 39.71 1.40
2232 2247 5.663556 TGGAACCTTGTTGGAACCTTTTATT 59.336 36.000 0.00 0.00 39.71 1.40
2233 2248 5.212745 TGGAACCTTGTTGGAACCTTTTAT 58.787 37.500 0.00 0.00 39.71 1.40
2234 2249 4.611367 TGGAACCTTGTTGGAACCTTTTA 58.389 39.130 0.00 0.00 39.71 1.52
2235 2250 3.445987 TGGAACCTTGTTGGAACCTTTT 58.554 40.909 0.00 0.00 39.71 2.27
2236 2251 3.108847 TGGAACCTTGTTGGAACCTTT 57.891 42.857 0.00 0.00 39.71 3.11
2237 2252 2.838637 TGGAACCTTGTTGGAACCTT 57.161 45.000 0.00 0.00 39.71 3.50
2238 2253 2.838637 TTGGAACCTTGTTGGAACCT 57.161 45.000 0.00 0.00 39.71 3.50
2239 2254 2.698274 ACATTGGAACCTTGTTGGAACC 59.302 45.455 0.00 0.00 39.71 3.62
2240 2255 3.550030 CGACATTGGAACCTTGTTGGAAC 60.550 47.826 0.00 0.00 39.71 3.62
2241 2256 2.621055 CGACATTGGAACCTTGTTGGAA 59.379 45.455 0.00 0.00 39.71 3.53
2242 2257 2.226330 CGACATTGGAACCTTGTTGGA 58.774 47.619 0.00 0.00 39.71 3.53
2243 2258 1.335872 GCGACATTGGAACCTTGTTGG 60.336 52.381 12.83 0.00 42.93 3.77
2244 2259 1.335872 GGCGACATTGGAACCTTGTTG 60.336 52.381 0.00 0.00 0.00 3.33
2245 2260 0.958822 GGCGACATTGGAACCTTGTT 59.041 50.000 0.00 0.00 0.00 2.83
2246 2261 1.234615 CGGCGACATTGGAACCTTGT 61.235 55.000 0.00 0.00 0.00 3.16
2247 2262 0.953471 TCGGCGACATTGGAACCTTG 60.953 55.000 4.99 0.00 0.00 3.61
2248 2263 0.953960 GTCGGCGACATTGGAACCTT 60.954 55.000 33.07 0.00 32.09 3.50
2249 2264 1.375523 GTCGGCGACATTGGAACCT 60.376 57.895 33.07 0.00 32.09 3.50
2250 2265 1.375523 AGTCGGCGACATTGGAACC 60.376 57.895 37.71 11.41 34.60 3.62
2251 2266 0.669318 TCAGTCGGCGACATTGGAAC 60.669 55.000 37.71 12.75 34.60 3.62
2252 2267 0.034198 TTCAGTCGGCGACATTGGAA 59.966 50.000 37.71 29.19 34.60 3.53
2253 2268 0.034198 TTTCAGTCGGCGACATTGGA 59.966 50.000 37.71 25.91 34.60 3.53
2254 2269 0.443869 CTTTCAGTCGGCGACATTGG 59.556 55.000 37.71 24.27 34.60 3.16
2255 2270 0.443869 CCTTTCAGTCGGCGACATTG 59.556 55.000 37.71 28.32 34.60 2.82
2256 2271 0.034896 ACCTTTCAGTCGGCGACATT 59.965 50.000 37.71 18.95 34.60 2.71
2257 2272 0.892755 TACCTTTCAGTCGGCGACAT 59.107 50.000 37.71 21.91 34.60 3.06
2258 2273 0.675083 TTACCTTTCAGTCGGCGACA 59.325 50.000 37.71 18.95 34.60 4.35
2259 2274 2.005971 ATTACCTTTCAGTCGGCGAC 57.994 50.000 31.33 31.33 0.00 5.19
2260 2275 3.872511 TTATTACCTTTCAGTCGGCGA 57.127 42.857 4.99 4.99 0.00 5.54
2261 2276 4.932268 TTTTATTACCTTTCAGTCGGCG 57.068 40.909 0.00 0.00 0.00 6.46
2262 2277 6.072893 TGTCTTTTTATTACCTTTCAGTCGGC 60.073 38.462 0.00 0.00 0.00 5.54
2263 2278 7.429636 TGTCTTTTTATTACCTTTCAGTCGG 57.570 36.000 0.00 0.00 0.00 4.79
2264 2279 7.015877 GCTGTCTTTTTATTACCTTTCAGTCG 58.984 38.462 0.00 0.00 0.00 4.18
2265 2280 8.100508 AGCTGTCTTTTTATTACCTTTCAGTC 57.899 34.615 0.00 0.00 0.00 3.51
2266 2281 7.719633 TGAGCTGTCTTTTTATTACCTTTCAGT 59.280 33.333 0.00 0.00 0.00 3.41
2267 2282 8.017946 GTGAGCTGTCTTTTTATTACCTTTCAG 58.982 37.037 0.00 0.00 0.00 3.02
2268 2283 7.500892 TGTGAGCTGTCTTTTTATTACCTTTCA 59.499 33.333 0.00 0.00 0.00 2.69
2269 2284 7.803659 GTGTGAGCTGTCTTTTTATTACCTTTC 59.196 37.037 0.00 0.00 0.00 2.62
2270 2285 7.284489 TGTGTGAGCTGTCTTTTTATTACCTTT 59.716 33.333 0.00 0.00 0.00 3.11
2271 2286 6.770785 TGTGTGAGCTGTCTTTTTATTACCTT 59.229 34.615 0.00 0.00 0.00 3.50
2272 2287 6.296026 TGTGTGAGCTGTCTTTTTATTACCT 58.704 36.000 0.00 0.00 0.00 3.08
2273 2288 6.426937 TCTGTGTGAGCTGTCTTTTTATTACC 59.573 38.462 0.00 0.00 0.00 2.85
2274 2289 7.421530 TCTGTGTGAGCTGTCTTTTTATTAC 57.578 36.000 0.00 0.00 0.00 1.89
2275 2290 7.658179 CTCTGTGTGAGCTGTCTTTTTATTA 57.342 36.000 0.00 0.00 35.84 0.98
2276 2291 6.551385 CTCTGTGTGAGCTGTCTTTTTATT 57.449 37.500 0.00 0.00 35.84 1.40
2289 2304 2.233431 AGCCTCTTTAGCTCTGTGTGAG 59.767 50.000 0.00 0.00 45.33 3.51
2290 2305 2.251818 AGCCTCTTTAGCTCTGTGTGA 58.748 47.619 0.00 0.00 34.91 3.58
2291 2306 2.758736 AGCCTCTTTAGCTCTGTGTG 57.241 50.000 0.00 0.00 34.91 3.82
2292 2307 3.702792 TCTAGCCTCTTTAGCTCTGTGT 58.297 45.455 0.00 0.00 41.83 3.72
2293 2308 4.727507 TTCTAGCCTCTTTAGCTCTGTG 57.272 45.455 0.00 0.00 41.83 3.66
2294 2309 4.528596 TGTTTCTAGCCTCTTTAGCTCTGT 59.471 41.667 0.00 0.00 41.83 3.41
2295 2310 4.867608 GTGTTTCTAGCCTCTTTAGCTCTG 59.132 45.833 0.00 0.00 41.83 3.35
2296 2311 4.528596 TGTGTTTCTAGCCTCTTTAGCTCT 59.471 41.667 0.00 0.00 41.83 4.09
2297 2312 4.822026 TGTGTTTCTAGCCTCTTTAGCTC 58.178 43.478 0.00 0.00 41.83 4.09
2298 2313 4.528596 TCTGTGTTTCTAGCCTCTTTAGCT 59.471 41.667 0.00 0.00 44.49 3.32
2299 2314 4.627900 GTCTGTGTTTCTAGCCTCTTTAGC 59.372 45.833 0.00 0.00 0.00 3.09
2300 2315 6.031751 AGTCTGTGTTTCTAGCCTCTTTAG 57.968 41.667 0.00 0.00 0.00 1.85
2301 2316 6.350277 GCTAGTCTGTGTTTCTAGCCTCTTTA 60.350 42.308 10.99 0.00 46.04 1.85
2302 2317 4.965200 AGTCTGTGTTTCTAGCCTCTTT 57.035 40.909 0.00 0.00 0.00 2.52
2303 2318 4.081917 GCTAGTCTGTGTTTCTAGCCTCTT 60.082 45.833 10.99 0.00 46.04 2.85
2304 2319 3.445805 GCTAGTCTGTGTTTCTAGCCTCT 59.554 47.826 10.99 0.00 46.04 3.69
2305 2320 3.776340 GCTAGTCTGTGTTTCTAGCCTC 58.224 50.000 10.99 0.00 46.04 4.70
2306 2321 3.878160 GCTAGTCTGTGTTTCTAGCCT 57.122 47.619 10.99 0.00 46.04 4.58
2309 2324 5.392767 TCTTGGCTAGTCTGTGTTTCTAG 57.607 43.478 0.00 0.00 35.60 2.43
2310 2325 7.396339 TCTTATCTTGGCTAGTCTGTGTTTCTA 59.604 37.037 0.00 0.00 0.00 2.10
2311 2326 4.899352 ATCTTGGCTAGTCTGTGTTTCT 57.101 40.909 0.00 0.00 0.00 2.52
2312 2327 6.311690 GTCTTATCTTGGCTAGTCTGTGTTTC 59.688 42.308 0.00 0.00 0.00 2.78
2313 2328 6.166982 GTCTTATCTTGGCTAGTCTGTGTTT 58.833 40.000 0.00 0.00 0.00 2.83
2314 2329 5.622460 CGTCTTATCTTGGCTAGTCTGTGTT 60.622 44.000 0.00 0.00 0.00 3.32
2315 2330 4.142359 CGTCTTATCTTGGCTAGTCTGTGT 60.142 45.833 0.00 0.00 0.00 3.72
2316 2331 4.355437 CGTCTTATCTTGGCTAGTCTGTG 58.645 47.826 0.00 0.00 0.00 3.66
2317 2332 3.181485 GCGTCTTATCTTGGCTAGTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
2318 2333 3.376540 GCGTCTTATCTTGGCTAGTCTG 58.623 50.000 0.00 0.00 0.00 3.51
2319 2334 2.362717 GGCGTCTTATCTTGGCTAGTCT 59.637 50.000 0.00 0.00 0.00 3.24
2320 2335 2.100916 TGGCGTCTTATCTTGGCTAGTC 59.899 50.000 0.00 0.00 0.00 2.59
2321 2336 2.108168 TGGCGTCTTATCTTGGCTAGT 58.892 47.619 0.00 0.00 0.00 2.57
2322 2337 2.159099 TGTGGCGTCTTATCTTGGCTAG 60.159 50.000 0.00 0.00 0.00 3.42
2323 2338 1.828595 TGTGGCGTCTTATCTTGGCTA 59.171 47.619 0.00 0.00 0.00 3.93
2324 2339 0.613260 TGTGGCGTCTTATCTTGGCT 59.387 50.000 0.00 0.00 0.00 4.75
2325 2340 1.130561 GTTGTGGCGTCTTATCTTGGC 59.869 52.381 0.00 0.00 0.00 4.52
2326 2341 1.737793 GGTTGTGGCGTCTTATCTTGG 59.262 52.381 0.00 0.00 0.00 3.61
2327 2342 1.393539 CGGTTGTGGCGTCTTATCTTG 59.606 52.381 0.00 0.00 0.00 3.02
2328 2343 1.674817 CCGGTTGTGGCGTCTTATCTT 60.675 52.381 0.00 0.00 0.00 2.40
2329 2344 0.108329 CCGGTTGTGGCGTCTTATCT 60.108 55.000 0.00 0.00 0.00 1.98
2330 2345 1.702491 GCCGGTTGTGGCGTCTTATC 61.702 60.000 1.90 0.00 46.75 1.75
2331 2346 1.743995 GCCGGTTGTGGCGTCTTAT 60.744 57.895 1.90 0.00 46.75 1.73
2332 2347 2.357760 GCCGGTTGTGGCGTCTTA 60.358 61.111 1.90 0.00 46.75 2.10
2339 2354 1.586154 CTTTAGCCAGCCGGTTGTGG 61.586 60.000 17.69 15.43 36.85 4.17
2340 2355 0.605319 TCTTTAGCCAGCCGGTTGTG 60.605 55.000 17.69 9.73 33.28 3.33
2341 2356 0.328258 ATCTTTAGCCAGCCGGTTGT 59.672 50.000 17.69 1.85 33.28 3.32
2342 2357 2.158957 TCTATCTTTAGCCAGCCGGTTG 60.159 50.000 11.98 11.98 33.28 3.77
2343 2358 2.116238 TCTATCTTTAGCCAGCCGGTT 58.884 47.619 1.90 0.00 33.28 4.44
2344 2359 1.789523 TCTATCTTTAGCCAGCCGGT 58.210 50.000 1.90 0.00 33.28 5.28
2345 2360 3.764434 TCTATCTATCTTTAGCCAGCCGG 59.236 47.826 0.00 0.00 0.00 6.13
2346 2361 5.590530 ATCTATCTATCTTTAGCCAGCCG 57.409 43.478 0.00 0.00 0.00 5.52
2347 2362 8.536175 AGTTTATCTATCTATCTTTAGCCAGCC 58.464 37.037 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.