>input_sequence_81979
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-----------------------------------------ATGGCGCCGAAGGCCTCCCTCCTCGTGGGGCTCAGCCTG
GTCCTCGTCTTCACCGTGGCCAACGCGGTGCGGCGACAGCTGCCCGACGCCGACTCCGGCGACCCCGACGCCGACGCCGT
CCCACAGCAAGTGCCCCAAGAACGCGCTGAAGCTCGCTGCGTGCGCCGACGTCCTGGGCCTCGTCAGCGCCGAGGTCGGC
CAGCCGCCGGCCGAGCCGTGCTGCAGCATCCTCGGCGGCCTCGCCGACCTCGAGGCCGCCGTCTGCCTCTGCACGGCCAT
CAAGGCCAACGTGCTCGGCATCAGCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACCTCC
CAAGTGGCTTCATTTGCGCTTGA---------------------------------------------------------
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>chr6D_1_TraesCS6D01G229700
CCGGACTTTAGCCTTTAGGCTGCTAGCTGGAGCAGTGTCACACGACGTTCACACACCTTGGAGGAGAATCCCACTGGATG
GTTGGGTTTCTGACCTTCAGGATGATTTCGAGACCCGATCGTCGGTCCGACGTGACGGGCGTGTCAGGCTACGCCTGGGC
CGTCTCATATTCGTCCTAAATTTGAGTTGTATATGAGGGATGCCATTCAACCCAGACATTTGATATAGATTTGAGGTGCT
CGAATGGGTCGGATTTTTGACCGGTCAGTGACAGGGCCATCTGTCCGTGTATTTGAGACCGGTTAGAGGCGACTGGGTTT
AGATGCAGAGTGCTGCCCCATCCGAAAGTCGGTTTCCCTCCTCTCTCCCCAGACGTGCTGTGTGACATGTGAATCGTATT
CGCTCGTCGAGCGACCCACTGAAATGACGCTGC-GTTGATGCCATGTCAGGGCAGAAACCGATCGAGCTCGAGCCAGCCA
GGGAGCTGGTCCAGAGGGTGCCTACGGCAGCACAACATTGACCGTCGGGCCCACAAGGCCACAAGCAGAGGAAGCTGCCG
AGCCGTCGTCTTGGAGCCTTGCCGCTGCCTCACTGCCATTCTATCTTGCCAGCTCCACTGCCTGCACATGGGTTACCGTG
CACTGCTAGCAGTCTGAGACATGTCATCTTCGCATTTCAGAAAGCAATGATACGAACATCTGCCTCTGCGCCCGATCTGG
CCACAGCTCAAGCCAGCCCTACGCGTCTCACGGACTCGCAGGACCGAGCTAGGAATTGTTCTGCTCGTGAATCATTTTCC
TCAGGGAGGTGTCTGCACATACATCTTGTAAGATGGAGTATTATGAAAATGATGATGAAGCTAGGGTTTCGGTTCTCCTC
TACAAATACCCACGTACGTGCCCCGGGTTCTTCAGCCACGTCCACAGTCGCACAAGCACTCTTCTAGTTCTAGCCAACCC
GTACGTGCAAGCACCTCTGCACCATCGGGTTTTCAGCAGCCATGGCGCCGAAGGCCTCCCTCCTCGTGGGGCTCAGCCTG
GTCCTCGTCTTCACCGTGGCCAACGCGGTGCGGCGACAGCTGCCCGACGCCGACTCCGGCGACCCCGACGCCGACGCCGT
CCCACAGCAAGTGCCCCAAGAACGCGCTGAAGCTCGCTGCGTGCGCCGACGTCCTGGGCCTCGTCAGCGCCGAGGTCGGC
CAGCCGCCGGCCGAGCCGTGCTGCAGCATCCTCGGCGGCCTCGCCGACCTCGAGGCCGCCGTCTGCCTCTGCACGGCCAT
CAAGGCCAACGTGCTCGGCATCAGCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACCTCC
CAAGTGGCTTCATTTGCGCTTGATTAAGCTACGTAGTTCATCATG--------TAGTTGCATGCAGCGCGCGCACATGAA
CACAGCGTTCATTCGTGACTGCATGCATGTTGGGTTCGTCGATATCCTTGTCTGCTTACTCTGTTGGTTCTGAATGTAGA
ACTGCTTCAGATCTA-----TCTGGTGTGCCAATTGTTGTGCGTGTTTCGTGTGTGTTGCGGGGGAGATGCAATGGTGTT
TGTACTTGGGGTTGTATCTGCAATTGGTGTGTCTAGCTATCCAATGCATGTAGTATGTGTGCCAAGTTGTGATCAAGCAA
TGCTGCTTAATTGTATTATAAGTATTATTTTGCCGACTATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGTACAGTAAGCACATTCTCAGTTTTCACATTTACAACCCTTTATATATGCATCTCATATATAGCACA
TTCCTACGATCAACACCTTTTTTTCGAAAAGGGGGATCGCCCCGGCCTCTGCATCAGAGTGATGCATACGGCCATCTTAT
TAACGAAATAAAAGGTTCCAACAAGGTTCCAATGTCGCCGACTGAAAGGTAATAAAAAGACAGCTCACACAGAGCTAAAG
AGGCTAGAAACACAGACTAGCCAAGATAAGACGCCACAACCGGCTGGCTAAAGATAGATAGATAAACTAATTGCCT
>chr6A_358
CTCCTGG-------------------------------------------------------------------------
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-------------------------------------------TCTCCCCAGACGTGCTGTGTGACATGTGAATCGTATT
CACTCGTCAAGCGAGCCAATGAAATGACGCTGAAGTTGATGCCATGGCAGGGCAGAAACCGATCGAGCACGAACCAGCCA
GGGAGCTGGCCAAGAGGGTGCCAACGGCAACACAGCATTGACCGTCAGGCCCACAAG--------CAGAGCAAGCTGCCG
AGCCGTCGTCTTGGAGCCTTGCCGCTGCCTCACTGCCATTCTACCTTGCCAGCTCCACTGCCTGCACATGGGTTACCGTG
CACGGCTAGCAGTCCGAGACATGTCATCTTCGCATTTCAGAAAGCAATGATACGAACATCTGCCTCTGCGCCCGATCTGG
CCACAGCTCAAGCCAGCCCTACGCGTCTCACGCACTCGCAGGACCGAGCTACGAATTATTCTGCTCGTGAATCATTTTCT
TCAGGGAGGTATCTGCAGATACATCTTGTAAGATGGAGTATTATGAAAATGATGATGAAGCTAGGATTTCGGTTCTCCTC
TACAAATACCCACGTACGTGCCCCGGGTTCTTCAGCCACGTTCACAGTCGCACAAGCACTCTTCTAGTTCTAGCCAACCC
GTACGTGCAAGCACCTCTGCACCATCGGGTTTTCAGCAGCCATGGCGCCGAAGGCCTCCCTCCTCGTGGCCCTCAGCCTG
GTCCTCGTCTTCACCGTGGCCAACGCG-TGCGGCGATAGCTGCCCGACGCCGACTCCGGCGACCCCGACACCGACGCCGT
CCCACAGCAAGTGCCCCAAGAACGCGCTGAAGCTCGCTGCGTGCGCCGACGTCCTGGGCCTCGTCCTCGCCCAGGTCGAC
CAGCCGCCGGCCGAGCCGTGCTGCAGCATCCTCGGCGGCCTCGCCGACCTCGAGGCCGCCGTCTGCCTCTGCACGGCCAT
CAAGGCCAACGTGCTCGGCATCAGCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACCTCC
CAAGTGGCTTCATTTGCGCTTGATTAAGATACGTAGTTCATCATG--------TACTTGCATGCAGCGCGCGCACACGAA
AACAACGTTCATTCGTGACTGCATGCATGTTGGGTTCGTCGATATCCTTGTCTGCTTACTTTGTTGGTTCTGAATGTAGA
ACTGCTTCAGATCTACTGTATCTGGTGTGCCAATTGTTGTGCATGTTTCGTGTGTGTTGCGGGGGAGATGCAATAGTGTT
TGTACTTGGGGTTGTATCTGCAATTGGTGTGTCTAGCTATCCAATGCATGTAGTACGTGTGCCAAGTTGTGATCAAGCAA
TGCTGCTT------------------------------------------------------------------------
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>chr6B_399
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------------------------------------------------------------------------------TT
CGCTCGTCAAGCGACCCAATGAAATGACGC------TGATGCCATGGCAGGGCAGAAACCGATCGAGCTCGAGCCAGCCA
GGGATCTGGTCCAGA-GGTGCCTACGGCAGCACAGCATTGACCGTCGGGCCCACAAGGCCACAAGCAGAGGAAGCTGCCG
AGCCGTCGTCTTGGAGCCTTGCCGCTGCCTCGCTGCCATTCTATCTTGCCAGCTCCACTGCCTGCACATGGGTTACCGTG
CACTGCTAGCAGTCCGAGACATGTCATCTTCGCATTTCAGAAAGCAATGATACGAACATCTGCCTCTGCGCCCAATCTGG
CCACAGCTCAAGCTAGCCCTACGCGTCTCACGGACTCGCAGGACGGAGCTACGAATTATTCTGCTCGTGAATCATTTTCT
TCAGGGAGGTATCTGCAGATACATCTTGTAAGATGGAGTATTCTGAAAATGATGATGAAGCTAGGGTTTCGGTTCTCCTC
TACAAATACCCACGTACGTACCCC----TCTTCAGCCACGTCCACAGTCGCACAAGCACTCTTCTAGGTCTAGCCAACCC
GTACGTGCAAGCACCTCTGCACCATCGGGTTTTCAGCAGCCATGGTGCCGAAGGCCTCCCTCCTCGTGGCCCTCAGCCTG
GTTCTCGTCTTCACCGTGGCCAACGCG-TGCGGCGATAGCTGCCCGACGCCGACTCCGGCGACCCCGACACCGACGCCGT
CCCACAGCAAGTGCCCCAAGAACGCACTGAAGCTCGCTGCGTGCGCCGACGTCCTAGGCCTCGTCAGCGCCGAGGTCGGC
CAGCCGCCGGCCGAGCCGTGCTGCAGCATCCTCGGCGGCCTCGCCGACCTCGAGGCCGCCGTCTGCCTCTGCACGGCCAT
CAAGGCCAACGTGCTCGGCATCAGCCTCGACATCCCCCTCAAGCTCAGCCTGCTCGTCAACTACTGCGGCAAGAACCTCC
CAAGTGGCTTCATTTGCGCTTGATTAAACTACGTAGTTCATCATGTATTCATGTACTTGCATGCAGCGCGCGCACACGAA
AACAACGTTCATTCGTGACTGCATGCATGTTGGGTTCGTCGATATCCTTGTCTACTTACTCTGTTGGTTCTGAATGTAGA
ACTGCTTCAGATCT-----ATCTGGTGTGCCAATTGTTGTGCATGTTTCGTGTGTGTTGCGGGGGAGATGCAATGATGTT
TGTACTTGGGGTTGTATGTGCAATTGGTGTGTCTAGCTATCCAATGAATGGAGTAT------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
--------S---------S-------------S-------------S---------------------------------
----------------------------------S---------------------------------------------
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--------------S-----------------------------------------------------------------
---------------------------------------------------S-----S---------------------S
----------S------S--------------------------------------------------------------
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---------------------------S--------S--------------------------------S----------
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-------------------------------------------------------S--------------------S---
S---S---------------------------------------------------------------------------
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--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_250
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----------------------------------------------------------------------TTGAGGTGCT
CGAATGGGTC----------------------------------------------------------------------
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>reverse_2214
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-----------------------------------------------------TCAGAGTGATGCATACGGCC-------
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