Multiple sequence alignment - TraesCS6D01G222600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G222600 chr6D 100.000 2798 0 0 1 2798 314055149 314057946 0.000000e+00 5168.0
1 TraesCS6D01G222600 chr6B 89.331 2437 118 54 210 2564 512449103 512446727 0.000000e+00 2929.0
2 TraesCS6D01G222600 chr6B 100.000 28 0 0 31 58 512449211 512449184 5.000000e-03 52.8
3 TraesCS6D01G222600 chr6A 88.478 1918 94 45 269 2143 451659252 451661085 0.000000e+00 2200.0
4 TraesCS6D01G222600 chr6A 93.931 379 20 3 2187 2564 451661091 451661467 1.120000e-158 569.0
5 TraesCS6D01G222600 chr2D 90.288 278 27 0 1111 1388 492676514 492676791 5.700000e-97 364.0
6 TraesCS6D01G222600 chr2D 96.154 104 4 0 2677 2780 552737916 552737813 1.330000e-38 171.0
7 TraesCS6D01G222600 chr2D 97.000 100 3 0 2681 2780 586128781 586128682 4.790000e-38 169.0
8 TraesCS6D01G222600 chr2B 89.531 277 29 0 1111 1387 578605289 578605565 4.430000e-93 351.0
9 TraesCS6D01G222600 chr2B 91.837 49 4 0 61 109 70839681 70839633 5.000000e-08 69.4
10 TraesCS6D01G222600 chr2A 89.531 277 29 0 1111 1387 637984701 637984977 4.430000e-93 351.0
11 TraesCS6D01G222600 chr2A 88.136 59 5 2 54 110 539588893 539588951 5.000000e-08 69.4
12 TraesCS6D01G222600 chr7D 97.000 100 3 0 2681 2780 593954476 593954377 4.790000e-38 169.0
13 TraesCS6D01G222600 chr7D 90.385 52 5 0 58 109 343752020 343751969 5.000000e-08 69.4
14 TraesCS6D01G222600 chr7B 97.000 100 3 0 2681 2780 530020883 530020982 4.790000e-38 169.0
15 TraesCS6D01G222600 chr5D 97.000 100 3 0 2681 2780 195599790 195599889 4.790000e-38 169.0
16 TraesCS6D01G222600 chr5D 97.000 100 3 0 2681 2780 467447811 467447712 4.790000e-38 169.0
17 TraesCS6D01G222600 chr5D 88.525 61 4 3 50 109 371845051 371845109 1.390000e-08 71.3
18 TraesCS6D01G222600 chr1D 97.000 100 3 0 2681 2780 107110483 107110582 4.790000e-38 169.0
19 TraesCS6D01G222600 chr1D 96.970 99 3 0 2682 2780 401202198 401202296 1.720000e-37 167.0
20 TraesCS6D01G222600 chr1D 96.970 99 3 0 2682 2780 412871807 412871709 1.720000e-37 167.0
21 TraesCS6D01G222600 chr4D 79.204 226 38 9 1108 1330 457075098 457075317 6.240000e-32 148.0
22 TraesCS6D01G222600 chr4D 85.075 67 4 6 47 110 332387844 332387907 2.330000e-06 63.9
23 TraesCS6D01G222600 chr7A 93.878 49 3 0 61 109 16623823 16623775 1.070000e-09 75.0
24 TraesCS6D01G222600 chr4A 95.652 46 2 0 64 109 1074717 1074762 1.070000e-09 75.0
25 TraesCS6D01G222600 chr4A 88.136 59 3 4 58 114 659629620 659629676 1.800000e-07 67.6
26 TraesCS6D01G222600 chr3D 95.652 46 2 0 64 109 19116405 19116450 1.070000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G222600 chr6D 314055149 314057946 2797 False 5168.0 5168 100.0000 1 2798 1 chr6D.!!$F1 2797
1 TraesCS6D01G222600 chr6B 512446727 512449211 2484 True 1490.9 2929 94.6655 31 2564 2 chr6B.!!$R1 2533
2 TraesCS6D01G222600 chr6A 451659252 451661467 2215 False 1384.5 2200 91.2045 269 2564 2 chr6A.!!$F1 2295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.037697 TTACGTGAGCAGCGGTCATT 60.038 50.0 12.24 6.81 42.05 2.57 F
1446 1505 0.030369 GCCGGTCGTCGATCATTAGT 59.970 55.0 6.28 0.00 42.43 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1655 0.041312 CGCAGCTGCTAACGTTGTTT 60.041 50.0 34.22 0.0 39.32 2.83 R
2765 2890 0.035458 CTCACTCCCACACTTCCCAC 59.965 60.0 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.044280 TTACGTGAGCAGCGGTCA 58.956 55.556 0.00 6.39 37.74 4.02
18 19 1.589630 TTACGTGAGCAGCGGTCAT 59.410 52.632 12.24 2.58 42.05 3.06
19 20 0.037697 TTACGTGAGCAGCGGTCATT 60.038 50.000 12.24 6.81 42.05 2.57
20 21 0.735978 TACGTGAGCAGCGGTCATTG 60.736 55.000 12.24 10.71 42.05 2.82
21 22 2.482374 GTGAGCAGCGGTCATTGC 59.518 61.111 12.24 0.00 42.05 3.56
22 23 3.120385 TGAGCAGCGGTCATTGCG 61.120 61.111 6.39 0.00 44.80 4.85
23 24 3.121030 GAGCAGCGGTCATTGCGT 61.121 61.111 3.45 0.00 44.80 5.24
24 25 3.088500 GAGCAGCGGTCATTGCGTC 62.089 63.158 3.45 0.00 44.80 5.19
25 26 4.166011 GCAGCGGTCATTGCGTCC 62.166 66.667 0.00 0.00 37.44 4.79
58 59 1.089920 CGCCAGCTTGCTCTTTGTAT 58.910 50.000 8.31 0.00 0.00 2.29
59 60 2.093711 TCGCCAGCTTGCTCTTTGTATA 60.094 45.455 8.31 0.00 0.00 1.47
60 61 2.286294 CGCCAGCTTGCTCTTTGTATAG 59.714 50.000 8.31 0.00 0.00 1.31
61 62 3.274288 GCCAGCTTGCTCTTTGTATAGT 58.726 45.455 1.78 0.00 0.00 2.12
62 63 4.442706 GCCAGCTTGCTCTTTGTATAGTA 58.557 43.478 1.78 0.00 0.00 1.82
63 64 4.876107 GCCAGCTTGCTCTTTGTATAGTAA 59.124 41.667 1.78 0.00 0.00 2.24
64 65 5.007136 GCCAGCTTGCTCTTTGTATAGTAAG 59.993 44.000 1.78 0.00 38.16 2.34
65 66 6.109359 CCAGCTTGCTCTTTGTATAGTAAGT 58.891 40.000 0.00 0.00 37.64 2.24
66 67 7.265673 CCAGCTTGCTCTTTGTATAGTAAGTA 58.734 38.462 0.00 0.00 37.64 2.24
67 68 7.222999 CCAGCTTGCTCTTTGTATAGTAAGTAC 59.777 40.741 0.00 0.00 37.64 2.73
68 69 7.976734 CAGCTTGCTCTTTGTATAGTAAGTACT 59.023 37.037 0.00 0.00 37.64 2.73
69 70 8.192110 AGCTTGCTCTTTGTATAGTAAGTACTC 58.808 37.037 0.00 0.00 37.64 2.59
70 71 7.435784 GCTTGCTCTTTGTATAGTAAGTACTCC 59.564 40.741 0.00 0.00 37.64 3.85
71 72 7.344095 TGCTCTTTGTATAGTAAGTACTCCC 57.656 40.000 0.00 0.00 37.73 4.30
72 73 7.124052 TGCTCTTTGTATAGTAAGTACTCCCT 58.876 38.462 0.00 0.00 37.73 4.20
73 74 7.284944 TGCTCTTTGTATAGTAAGTACTCCCTC 59.715 40.741 0.00 0.00 37.73 4.30
74 75 7.255555 GCTCTTTGTATAGTAAGTACTCCCTCC 60.256 44.444 0.00 0.00 37.73 4.30
75 76 6.769822 TCTTTGTATAGTAAGTACTCCCTCCG 59.230 42.308 0.00 0.00 37.73 4.63
76 77 5.636903 TGTATAGTAAGTACTCCCTCCGT 57.363 43.478 0.00 0.00 37.73 4.69
77 78 6.747414 TGTATAGTAAGTACTCCCTCCGTA 57.253 41.667 0.00 0.00 37.73 4.02
78 79 7.136822 TGTATAGTAAGTACTCCCTCCGTAA 57.863 40.000 0.00 0.00 37.73 3.18
79 80 7.573710 TGTATAGTAAGTACTCCCTCCGTAAA 58.426 38.462 0.00 0.00 37.73 2.01
80 81 6.951062 ATAGTAAGTACTCCCTCCGTAAAC 57.049 41.667 0.00 0.00 37.73 2.01
81 82 4.928263 AGTAAGTACTCCCTCCGTAAACT 58.072 43.478 0.00 0.00 0.00 2.66
82 83 6.067217 AGTAAGTACTCCCTCCGTAAACTA 57.933 41.667 0.00 0.00 0.00 2.24
83 84 6.485171 AGTAAGTACTCCCTCCGTAAACTAA 58.515 40.000 0.00 0.00 0.00 2.24
84 85 7.122048 AGTAAGTACTCCCTCCGTAAACTAAT 58.878 38.462 0.00 0.00 0.00 1.73
85 86 8.275040 AGTAAGTACTCCCTCCGTAAACTAATA 58.725 37.037 0.00 0.00 0.00 0.98
86 87 9.072375 GTAAGTACTCCCTCCGTAAACTAATAT 57.928 37.037 0.00 0.00 0.00 1.28
88 89 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
89 90 9.646522 AGTACTCCCTCCGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
154 155 8.894768 ATAAGCAGATTAATAGTCCAACTGTC 57.105 34.615 0.00 0.00 0.00 3.51
155 156 5.352284 AGCAGATTAATAGTCCAACTGTCG 58.648 41.667 0.00 0.00 0.00 4.35
166 167 0.962489 CAACTGTCGGACTGGAGACT 59.038 55.000 17.64 0.00 38.16 3.24
167 168 1.068194 CAACTGTCGGACTGGAGACTC 60.068 57.143 17.64 0.00 38.16 3.36
168 169 0.402504 ACTGTCGGACTGGAGACTCT 59.597 55.000 17.64 0.00 38.16 3.24
169 170 1.629353 ACTGTCGGACTGGAGACTCTA 59.371 52.381 17.64 0.00 38.16 2.43
170 171 2.285083 CTGTCGGACTGGAGACTCTAG 58.715 57.143 13.88 13.88 38.16 2.43
171 172 1.629353 TGTCGGACTGGAGACTCTAGT 59.371 52.381 20.33 20.33 41.08 2.57
172 173 2.011222 GTCGGACTGGAGACTCTAGTG 58.989 57.143 24.54 12.20 38.37 2.74
173 174 1.629353 TCGGACTGGAGACTCTAGTGT 59.371 52.381 24.54 3.32 38.37 3.55
174 175 2.011222 CGGACTGGAGACTCTAGTGTC 58.989 57.143 24.54 15.59 38.37 3.67
175 176 2.615747 CGGACTGGAGACTCTAGTGTCA 60.616 54.545 24.54 1.65 38.37 3.58
176 177 3.422796 GGACTGGAGACTCTAGTGTCAA 58.577 50.000 24.54 10.13 38.37 3.18
177 178 3.442273 GGACTGGAGACTCTAGTGTCAAG 59.558 52.174 24.54 18.68 43.03 3.02
180 181 3.230976 TGGAGACTCTAGTGTCAAGCAA 58.769 45.455 23.12 6.59 39.78 3.91
181 182 3.641436 TGGAGACTCTAGTGTCAAGCAAA 59.359 43.478 23.12 3.96 39.78 3.68
182 183 4.100963 TGGAGACTCTAGTGTCAAGCAAAA 59.899 41.667 23.12 3.08 39.78 2.44
183 184 5.221722 TGGAGACTCTAGTGTCAAGCAAAAT 60.222 40.000 23.12 3.73 39.78 1.82
184 185 5.350091 GGAGACTCTAGTGTCAAGCAAAATC 59.650 44.000 23.12 11.29 39.78 2.17
186 187 7.233389 AGACTCTAGTGTCAAGCAAAATCTA 57.767 36.000 23.12 0.00 39.27 1.98
187 188 7.846066 AGACTCTAGTGTCAAGCAAAATCTAT 58.154 34.615 23.12 0.00 39.27 1.98
188 189 7.978975 AGACTCTAGTGTCAAGCAAAATCTATC 59.021 37.037 23.12 0.00 39.27 2.08
189 190 6.754209 ACTCTAGTGTCAAGCAAAATCTATCG 59.246 38.462 0.00 0.00 0.00 2.92
190 191 6.863275 TCTAGTGTCAAGCAAAATCTATCGA 58.137 36.000 0.00 0.00 0.00 3.59
191 192 5.786401 AGTGTCAAGCAAAATCTATCGAC 57.214 39.130 0.00 0.00 0.00 4.20
192 193 5.237815 AGTGTCAAGCAAAATCTATCGACA 58.762 37.500 0.00 0.00 0.00 4.35
193 194 5.349817 AGTGTCAAGCAAAATCTATCGACAG 59.650 40.000 0.00 0.00 33.17 3.51
194 195 5.348724 GTGTCAAGCAAAATCTATCGACAGA 59.651 40.000 0.00 0.00 33.17 3.41
195 196 6.036517 GTGTCAAGCAAAATCTATCGACAGAT 59.963 38.462 0.00 0.00 40.76 2.90
196 197 7.222805 GTGTCAAGCAAAATCTATCGACAGATA 59.777 37.037 6.63 0.00 38.26 1.98
198 199 8.604035 GTCAAGCAAAATCTATCGACAGATAAA 58.396 33.333 6.63 0.00 38.73 1.40
199 200 9.161629 TCAAGCAAAATCTATCGACAGATAAAA 57.838 29.630 6.63 0.00 38.73 1.52
200 201 9.214953 CAAGCAAAATCTATCGACAGATAAAAC 57.785 33.333 6.63 0.00 38.73 2.43
201 202 8.492673 AGCAAAATCTATCGACAGATAAAACA 57.507 30.769 6.63 0.00 38.73 2.83
202 203 8.607459 AGCAAAATCTATCGACAGATAAAACAG 58.393 33.333 6.63 0.00 38.73 3.16
203 204 7.852945 GCAAAATCTATCGACAGATAAAACAGG 59.147 37.037 6.63 0.00 38.73 4.00
204 205 8.883731 CAAAATCTATCGACAGATAAAACAGGT 58.116 33.333 6.63 0.00 38.73 4.00
205 206 8.425577 AAATCTATCGACAGATAAAACAGGTG 57.574 34.615 6.63 0.00 38.73 4.00
208 209 3.571571 TCGACAGATAAAACAGGTGACG 58.428 45.455 0.00 0.00 0.00 4.35
244 245 0.725784 GTGTAGCACAACGCACATGC 60.726 55.000 0.00 0.00 46.13 4.06
248 249 2.147749 GCACAACGCACATGCATCG 61.148 57.895 0.00 0.00 42.21 3.84
254 255 2.819595 GCACATGCATCGGTCGGT 60.820 61.111 0.00 0.00 41.59 4.69
282 283 1.067060 CTATCCATCTTGGTCGACGCA 59.933 52.381 9.92 6.05 39.03 5.24
304 306 1.972198 CAGCTGGAGGGACACGTAA 59.028 57.895 5.57 0.00 0.00 3.18
305 307 0.389948 CAGCTGGAGGGACACGTAAC 60.390 60.000 5.57 0.00 0.00 2.50
306 308 1.445582 GCTGGAGGGACACGTAACG 60.446 63.158 0.00 0.00 0.00 3.18
307 309 1.445582 CTGGAGGGACACGTAACGC 60.446 63.158 0.00 0.00 0.00 4.84
308 310 2.149803 CTGGAGGGACACGTAACGCA 62.150 60.000 9.90 0.00 0.00 5.24
309 311 1.005867 GGAGGGACACGTAACGCAA 60.006 57.895 9.90 0.00 0.00 4.85
319 321 0.245585 CGTAACGCAACGTAACGTCG 60.246 55.000 15.05 11.72 42.68 5.12
345 347 5.529430 TCGAACTGGAGATAAGCTCTTCTAG 59.471 44.000 0.00 0.00 43.43 2.43
377 383 2.545731 GATCCAAGGACGAAGAGAAGC 58.454 52.381 0.00 0.00 0.00 3.86
532 555 4.735132 TTCGGGAGAAGCCGTGCG 62.735 66.667 0.00 0.00 45.39 5.34
555 578 1.825191 CTGGGCCGATTGACATGGG 60.825 63.158 0.00 0.00 0.00 4.00
732 768 1.227089 CGAGGCCCAAGTCGATCTG 60.227 63.158 6.26 0.00 38.50 2.90
813 849 3.896133 GGCCCGATACAGCGACGA 61.896 66.667 0.00 0.00 0.00 4.20
911 951 1.065109 GGTGCACCACGTTCCAAAC 59.935 57.895 31.23 0.00 34.83 2.93
950 999 2.622436 CTACTAGCCAGCTTGGTTCAC 58.378 52.381 0.00 0.00 40.46 3.18
978 1027 4.280101 TCTGTCTCTGACGATTCGATTC 57.720 45.455 13.95 1.18 34.95 2.52
980 1029 2.752903 TGTCTCTGACGATTCGATTCCA 59.247 45.455 13.95 4.37 34.95 3.53
981 1030 3.192633 TGTCTCTGACGATTCGATTCCAA 59.807 43.478 13.95 0.00 34.95 3.53
1086 1135 0.964358 GCCAGTTCCTTCAGCAGCAT 60.964 55.000 0.00 0.00 0.00 3.79
1305 1360 2.125350 CTGGAGCAGGACTTCGCC 60.125 66.667 0.00 0.00 0.00 5.54
1387 1442 4.492160 CTCTCGCCGCGCAGGTAA 62.492 66.667 8.75 1.70 43.70 2.85
1388 1443 3.774959 CTCTCGCCGCGCAGGTAAT 62.775 63.158 8.75 0.00 43.70 1.89
1389 1444 2.890474 CTCGCCGCGCAGGTAATT 60.890 61.111 8.75 0.00 43.70 1.40
1419 1478 2.209690 TGCATGCCATATCCTCCATG 57.790 50.000 16.68 0.00 38.41 3.66
1445 1504 0.663568 GGCCGGTCGTCGATCATTAG 60.664 60.000 6.28 0.00 42.43 1.73
1446 1505 0.030369 GCCGGTCGTCGATCATTAGT 59.970 55.000 6.28 0.00 42.43 2.24
1447 1506 1.535437 GCCGGTCGTCGATCATTAGTT 60.535 52.381 6.28 0.00 42.43 2.24
1448 1507 2.382519 CCGGTCGTCGATCATTAGTTC 58.617 52.381 6.28 0.00 42.43 3.01
1449 1508 2.223409 CCGGTCGTCGATCATTAGTTCA 60.223 50.000 6.28 0.00 42.43 3.18
1450 1509 3.550233 CCGGTCGTCGATCATTAGTTCAT 60.550 47.826 6.28 0.00 42.43 2.57
1451 1510 4.042398 CGGTCGTCGATCATTAGTTCATT 58.958 43.478 6.28 0.00 42.43 2.57
1452 1511 5.209977 CGGTCGTCGATCATTAGTTCATTA 58.790 41.667 6.28 0.00 42.43 1.90
1461 1520 8.565416 TCGATCATTAGTTCATTACAGATACGT 58.435 33.333 0.00 0.00 0.00 3.57
1596 1655 1.572941 CGACGTGGACGACAAGAGA 59.427 57.895 6.12 0.00 43.02 3.10
1640 1699 1.608717 AAGGCGAAGGATGAGAGCGT 61.609 55.000 0.00 0.00 0.00 5.07
1710 1769 2.126189 GACGACCACCTGGCGTAC 60.126 66.667 11.96 5.13 43.88 3.67
1812 1871 2.250188 GCATGAACCAACGTTGCATAC 58.750 47.619 22.93 11.54 30.30 2.39
1843 1925 1.200484 TGTACGTCGATGCTGTTGCTA 59.800 47.619 4.06 0.00 40.48 3.49
1923 2014 7.661027 GGTAGAATCGTAGAACAGATAGGTAGT 59.339 40.741 0.00 0.00 43.58 2.73
1924 2015 9.703892 GTAGAATCGTAGAACAGATAGGTAGTA 57.296 37.037 0.00 0.00 43.58 1.82
1925 2016 8.836268 AGAATCGTAGAACAGATAGGTAGTAG 57.164 38.462 0.00 0.00 43.58 2.57
1956 2047 1.203758 TGCAAGCAGCCATGAAATCTG 59.796 47.619 0.00 0.00 44.83 2.90
1969 2061 5.450171 CATGAAATCTGATGCGAGAAATCC 58.550 41.667 0.00 0.00 0.00 3.01
1978 2070 2.782222 CGAGAAATCCTCCCGCCGA 61.782 63.158 0.00 0.00 38.71 5.54
2037 2142 3.751175 TGTCCGTGAAAATGGCTTAAGAG 59.249 43.478 6.67 0.00 0.00 2.85
2045 2150 0.530744 ATGGCTTAAGAGTCACGCGA 59.469 50.000 15.93 0.00 40.98 5.87
2047 2152 0.714439 GGCTTAAGAGTCACGCGAAC 59.286 55.000 15.93 11.04 0.00 3.95
2086 2195 0.324614 TCATGTGATTCCTGTGGCGT 59.675 50.000 0.00 0.00 0.00 5.68
2110 2221 0.319641 GCCGACGAAAGAGAACCACT 60.320 55.000 0.00 0.00 0.00 4.00
2139 2253 1.583054 AGAGAACGTGTTTCACCAGC 58.417 50.000 0.00 0.00 36.57 4.85
2169 2283 5.773575 TGTCGCTCTAGAAATCCATACATC 58.226 41.667 0.00 0.00 0.00 3.06
2202 2316 3.169924 CTCTCGCGCGCGTGTTTA 61.170 61.111 46.54 29.86 40.74 2.01
2548 2673 1.821759 CCGCCCGCCACATCAAATA 60.822 57.895 0.00 0.00 0.00 1.40
2564 2689 0.305922 AATAAGAAGCGCGCAGATGC 59.694 50.000 35.10 11.93 37.78 3.91
2565 2690 0.531532 ATAAGAAGCGCGCAGATGCT 60.532 50.000 35.10 14.48 42.36 3.79
2566 2691 0.102300 TAAGAAGCGCGCAGATGCTA 59.898 50.000 35.10 13.38 39.76 3.49
2567 2692 0.740868 AAGAAGCGCGCAGATGCTAA 60.741 50.000 35.10 0.00 39.76 3.09
2568 2693 1.150567 AGAAGCGCGCAGATGCTAAG 61.151 55.000 35.10 0.00 39.76 2.18
2569 2694 2.098842 GAAGCGCGCAGATGCTAAGG 62.099 60.000 35.10 0.00 39.76 2.69
2570 2695 4.305036 GCGCGCAGATGCTAAGGC 62.305 66.667 29.10 0.00 39.32 4.35
2571 2696 3.643978 CGCGCAGATGCTAAGGCC 61.644 66.667 8.75 0.00 39.32 5.19
2572 2697 2.514592 GCGCAGATGCTAAGGCCA 60.515 61.111 5.01 0.00 39.32 5.36
2573 2698 2.114670 GCGCAGATGCTAAGGCCAA 61.115 57.895 5.01 0.00 39.32 4.52
2574 2699 1.723870 CGCAGATGCTAAGGCCAAC 59.276 57.895 5.01 0.00 39.32 3.77
2575 2700 0.745845 CGCAGATGCTAAGGCCAACT 60.746 55.000 5.01 0.00 39.32 3.16
2576 2701 1.020437 GCAGATGCTAAGGCCAACTC 58.980 55.000 5.01 0.00 38.21 3.01
2577 2702 1.673168 CAGATGCTAAGGCCAACTCC 58.327 55.000 5.01 0.00 37.74 3.85
2578 2703 1.065199 CAGATGCTAAGGCCAACTCCA 60.065 52.381 5.01 0.00 37.74 3.86
2579 2704 1.635487 AGATGCTAAGGCCAACTCCAA 59.365 47.619 5.01 0.00 37.74 3.53
2580 2705 1.745653 GATGCTAAGGCCAACTCCAAC 59.254 52.381 5.01 0.00 37.74 3.77
2581 2706 0.771127 TGCTAAGGCCAACTCCAACT 59.229 50.000 5.01 0.00 37.74 3.16
2582 2707 1.271379 TGCTAAGGCCAACTCCAACTC 60.271 52.381 5.01 0.00 37.74 3.01
2583 2708 1.726853 CTAAGGCCAACTCCAACTCG 58.273 55.000 5.01 0.00 0.00 4.18
2584 2709 1.275291 CTAAGGCCAACTCCAACTCGA 59.725 52.381 5.01 0.00 0.00 4.04
2585 2710 0.250338 AAGGCCAACTCCAACTCGAC 60.250 55.000 5.01 0.00 0.00 4.20
2586 2711 1.671379 GGCCAACTCCAACTCGACC 60.671 63.158 0.00 0.00 0.00 4.79
2587 2712 2.027625 GCCAACTCCAACTCGACCG 61.028 63.158 0.00 0.00 0.00 4.79
2588 2713 2.027625 CCAACTCCAACTCGACCGC 61.028 63.158 0.00 0.00 0.00 5.68
2589 2714 2.049433 AACTCCAACTCGACCGCG 60.049 61.111 0.00 0.00 39.35 6.46
2590 2715 4.719369 ACTCCAACTCGACCGCGC 62.719 66.667 0.00 0.00 37.46 6.86
2600 2725 4.405173 GACCGCGCGACGTCAAAC 62.405 66.667 34.63 5.59 41.42 2.93
2610 2735 4.717917 CGTCAAACGGATGTTCGC 57.282 55.556 0.00 0.00 37.31 4.70
2611 2736 2.150424 CGTCAAACGGATGTTCGCT 58.850 52.632 0.00 0.00 37.31 4.93
2612 2737 0.511221 CGTCAAACGGATGTTCGCTT 59.489 50.000 0.00 0.00 37.31 4.68
2613 2738 1.070175 CGTCAAACGGATGTTCGCTTT 60.070 47.619 0.00 0.00 37.31 3.51
2614 2739 2.156117 CGTCAAACGGATGTTCGCTTTA 59.844 45.455 0.00 0.00 37.31 1.85
2615 2740 3.363182 CGTCAAACGGATGTTCGCTTTAA 60.363 43.478 0.00 0.00 37.31 1.52
2616 2741 3.904234 GTCAAACGGATGTTCGCTTTAAC 59.096 43.478 0.00 0.00 37.31 2.01
2617 2742 3.058777 TCAAACGGATGTTCGCTTTAACC 60.059 43.478 0.00 0.00 37.31 2.85
2618 2743 2.172851 ACGGATGTTCGCTTTAACCA 57.827 45.000 0.00 0.00 0.00 3.67
2619 2744 2.496111 ACGGATGTTCGCTTTAACCAA 58.504 42.857 0.00 0.00 0.00 3.67
2620 2745 2.879646 ACGGATGTTCGCTTTAACCAAA 59.120 40.909 0.00 0.00 0.00 3.28
2621 2746 3.504520 ACGGATGTTCGCTTTAACCAAAT 59.495 39.130 0.00 0.00 0.00 2.32
2622 2747 4.022676 ACGGATGTTCGCTTTAACCAAATT 60.023 37.500 0.00 0.00 0.00 1.82
2623 2748 4.920927 CGGATGTTCGCTTTAACCAAATTT 59.079 37.500 0.00 0.00 0.00 1.82
2624 2749 5.060446 CGGATGTTCGCTTTAACCAAATTTC 59.940 40.000 0.00 0.00 0.00 2.17
2625 2750 5.060446 GGATGTTCGCTTTAACCAAATTTCG 59.940 40.000 0.00 0.00 0.00 3.46
2626 2751 4.922719 TGTTCGCTTTAACCAAATTTCGT 58.077 34.783 0.00 0.00 0.00 3.85
2627 2752 4.971220 TGTTCGCTTTAACCAAATTTCGTC 59.029 37.500 0.00 0.00 0.00 4.20
2628 2753 4.149910 TCGCTTTAACCAAATTTCGTCC 57.850 40.909 0.00 0.00 0.00 4.79
2629 2754 3.816523 TCGCTTTAACCAAATTTCGTCCT 59.183 39.130 0.00 0.00 0.00 3.85
2630 2755 4.276431 TCGCTTTAACCAAATTTCGTCCTT 59.724 37.500 0.00 0.00 0.00 3.36
2631 2756 4.979815 CGCTTTAACCAAATTTCGTCCTTT 59.020 37.500 0.00 0.00 0.00 3.11
2632 2757 5.108027 CGCTTTAACCAAATTTCGTCCTTTG 60.108 40.000 0.00 0.00 33.20 2.77
2637 2762 4.434713 CCAAATTTCGTCCTTTGGGTAG 57.565 45.455 13.81 0.00 44.97 3.18
2638 2763 3.192633 CCAAATTTCGTCCTTTGGGTAGG 59.807 47.826 13.81 0.00 44.97 3.18
2639 2764 4.076394 CAAATTTCGTCCTTTGGGTAGGA 58.924 43.478 0.00 0.00 42.02 2.94
2645 2770 1.200519 TCCTTTGGGTAGGACGATGG 58.799 55.000 0.00 0.00 39.40 3.51
2646 2771 0.180406 CCTTTGGGTAGGACGATGGG 59.820 60.000 0.00 0.00 37.50 4.00
2647 2772 0.180406 CTTTGGGTAGGACGATGGGG 59.820 60.000 0.00 0.00 0.00 4.96
2648 2773 0.548197 TTTGGGTAGGACGATGGGGT 60.548 55.000 0.00 0.00 0.00 4.95
2649 2774 0.979187 TTGGGTAGGACGATGGGGTC 60.979 60.000 0.00 0.00 36.18 4.46
2657 2782 3.900892 CGATGGGGTCGTCTCCGG 61.901 72.222 0.00 0.00 45.19 5.14
2658 2783 2.441532 GATGGGGTCGTCTCCGGA 60.442 66.667 2.93 2.93 33.95 5.14
2659 2784 2.758737 ATGGGGTCGTCTCCGGAC 60.759 66.667 0.00 0.00 38.97 4.79
2667 2792 2.675772 GTCTCCGGACGTGTCCCT 60.676 66.667 13.24 0.00 46.96 4.20
2668 2793 2.675423 TCTCCGGACGTGTCCCTG 60.675 66.667 13.24 5.31 46.96 4.45
2669 2794 3.760035 CTCCGGACGTGTCCCTGG 61.760 72.222 13.24 9.66 46.96 4.45
2672 2797 3.075005 CGGACGTGTCCCTGGGAT 61.075 66.667 20.40 1.66 46.96 3.85
2673 2798 2.584608 GGACGTGTCCCTGGGATG 59.415 66.667 20.40 14.28 43.94 3.51
2674 2799 2.125106 GACGTGTCCCTGGGATGC 60.125 66.667 20.40 13.53 32.73 3.91
2675 2800 2.607750 ACGTGTCCCTGGGATGCT 60.608 61.111 20.40 0.00 32.73 3.79
2676 2801 2.124983 CGTGTCCCTGGGATGCTG 60.125 66.667 20.40 5.78 32.73 4.41
2677 2802 2.959484 CGTGTCCCTGGGATGCTGT 61.959 63.158 20.40 0.00 32.73 4.40
2678 2803 1.377725 GTGTCCCTGGGATGCTGTG 60.378 63.158 20.40 0.00 32.73 3.66
2679 2804 2.273449 GTCCCTGGGATGCTGTGG 59.727 66.667 20.40 0.00 32.73 4.17
2680 2805 3.731728 TCCCTGGGATGCTGTGGC 61.732 66.667 12.53 0.00 39.26 5.01
2681 2806 3.736224 CCCTGGGATGCTGTGGCT 61.736 66.667 7.01 0.00 39.59 4.75
2682 2807 2.439701 CCTGGGATGCTGTGGCTG 60.440 66.667 0.00 0.00 39.59 4.85
2683 2808 2.672908 CTGGGATGCTGTGGCTGA 59.327 61.111 0.00 0.00 39.59 4.26
2684 2809 1.226542 CTGGGATGCTGTGGCTGAT 59.773 57.895 0.00 0.00 39.59 2.90
2685 2810 1.077285 TGGGATGCTGTGGCTGATG 60.077 57.895 0.00 0.00 39.59 3.07
2686 2811 1.826921 GGGATGCTGTGGCTGATGG 60.827 63.158 0.00 0.00 39.59 3.51
2687 2812 1.225426 GGATGCTGTGGCTGATGGA 59.775 57.895 0.00 0.00 39.59 3.41
2688 2813 0.178998 GGATGCTGTGGCTGATGGAT 60.179 55.000 0.00 0.00 39.59 3.41
2689 2814 1.688772 GATGCTGTGGCTGATGGATT 58.311 50.000 0.00 0.00 39.59 3.01
2690 2815 2.487805 GGATGCTGTGGCTGATGGATTA 60.488 50.000 0.00 0.00 39.59 1.75
2691 2816 3.418995 GATGCTGTGGCTGATGGATTAT 58.581 45.455 0.00 0.00 39.59 1.28
2692 2817 2.578786 TGCTGTGGCTGATGGATTATG 58.421 47.619 0.00 0.00 39.59 1.90
2693 2818 1.884579 GCTGTGGCTGATGGATTATGG 59.115 52.381 0.00 0.00 35.22 2.74
2694 2819 2.487805 GCTGTGGCTGATGGATTATGGA 60.488 50.000 0.00 0.00 35.22 3.41
2695 2820 3.813240 GCTGTGGCTGATGGATTATGGAT 60.813 47.826 0.00 0.00 35.22 3.41
2696 2821 3.756963 CTGTGGCTGATGGATTATGGATG 59.243 47.826 0.00 0.00 0.00 3.51
2697 2822 3.087031 GTGGCTGATGGATTATGGATGG 58.913 50.000 0.00 0.00 0.00 3.51
2698 2823 2.042026 TGGCTGATGGATTATGGATGGG 59.958 50.000 0.00 0.00 0.00 4.00
2699 2824 2.097825 GCTGATGGATTATGGATGGGC 58.902 52.381 0.00 0.00 0.00 5.36
2700 2825 2.291411 GCTGATGGATTATGGATGGGCT 60.291 50.000 0.00 0.00 0.00 5.19
2701 2826 3.816842 GCTGATGGATTATGGATGGGCTT 60.817 47.826 0.00 0.00 0.00 4.35
2702 2827 3.762288 CTGATGGATTATGGATGGGCTTG 59.238 47.826 0.00 0.00 0.00 4.01
2703 2828 2.681319 TGGATTATGGATGGGCTTGG 57.319 50.000 0.00 0.00 0.00 3.61
2704 2829 1.147608 TGGATTATGGATGGGCTTGGG 59.852 52.381 0.00 0.00 0.00 4.12
2705 2830 1.260544 GATTATGGATGGGCTTGGGC 58.739 55.000 0.00 0.00 37.82 5.36
2717 2842 2.656947 GCTTGGGCCCATATAAGACA 57.343 50.000 29.23 6.87 0.00 3.41
2718 2843 2.944129 GCTTGGGCCCATATAAGACAA 58.056 47.619 29.23 5.98 0.00 3.18
2719 2844 3.500343 GCTTGGGCCCATATAAGACAAT 58.500 45.455 29.23 0.00 0.00 2.71
2720 2845 4.662278 GCTTGGGCCCATATAAGACAATA 58.338 43.478 29.23 4.45 0.00 1.90
2721 2846 5.076873 GCTTGGGCCCATATAAGACAATAA 58.923 41.667 29.23 4.21 0.00 1.40
2722 2847 5.716703 GCTTGGGCCCATATAAGACAATAAT 59.283 40.000 29.23 0.00 0.00 1.28
2723 2848 6.127619 GCTTGGGCCCATATAAGACAATAATC 60.128 42.308 29.23 0.14 0.00 1.75
2724 2849 5.826643 TGGGCCCATATAAGACAATAATCC 58.173 41.667 24.45 0.00 0.00 3.01
2725 2850 5.201243 GGGCCCATATAAGACAATAATCCC 58.799 45.833 19.95 0.00 0.00 3.85
2726 2851 5.044105 GGGCCCATATAAGACAATAATCCCT 60.044 44.000 19.95 0.00 0.00 4.20
2727 2852 6.159751 GGGCCCATATAAGACAATAATCCCTA 59.840 42.308 19.95 0.00 0.00 3.53
2728 2853 7.283329 GGCCCATATAAGACAATAATCCCTAG 58.717 42.308 0.00 0.00 0.00 3.02
2729 2854 7.092399 GGCCCATATAAGACAATAATCCCTAGT 60.092 40.741 0.00 0.00 0.00 2.57
2730 2855 8.329502 GCCCATATAAGACAATAATCCCTAGTT 58.670 37.037 0.00 0.00 0.00 2.24
2742 2867 9.660180 CAATAATCCCTAGTTAATCTCTAAGGC 57.340 37.037 0.00 0.00 0.00 4.35
2743 2868 6.689663 AATCCCTAGTTAATCTCTAAGGCC 57.310 41.667 0.00 0.00 0.00 5.19
2744 2869 4.490706 TCCCTAGTTAATCTCTAAGGCCC 58.509 47.826 0.00 0.00 0.00 5.80
2745 2870 4.078219 TCCCTAGTTAATCTCTAAGGCCCA 60.078 45.833 0.00 0.00 0.00 5.36
2746 2871 4.846940 CCCTAGTTAATCTCTAAGGCCCAT 59.153 45.833 0.00 0.00 0.00 4.00
2747 2872 5.280215 CCCTAGTTAATCTCTAAGGCCCATG 60.280 48.000 0.00 0.00 0.00 3.66
2748 2873 4.092116 AGTTAATCTCTAAGGCCCATGC 57.908 45.455 0.00 0.00 0.00 4.06
2749 2874 3.459598 AGTTAATCTCTAAGGCCCATGCA 59.540 43.478 0.00 0.00 40.13 3.96
2750 2875 4.105377 AGTTAATCTCTAAGGCCCATGCAT 59.895 41.667 0.00 0.00 40.13 3.96
2751 2876 3.607490 AATCTCTAAGGCCCATGCATT 57.393 42.857 0.00 0.00 44.83 3.56
2752 2877 3.607490 ATCTCTAAGGCCCATGCATTT 57.393 42.857 0.00 0.00 38.57 2.32
2753 2878 2.658285 TCTCTAAGGCCCATGCATTTG 58.342 47.619 0.00 0.00 38.57 2.32
2754 2879 2.025037 TCTCTAAGGCCCATGCATTTGT 60.025 45.455 0.00 0.00 38.57 2.83
2755 2880 2.100252 CTCTAAGGCCCATGCATTTGTG 59.900 50.000 0.00 0.00 38.57 3.33
2756 2881 0.536260 TAAGGCCCATGCATTTGTGC 59.464 50.000 0.00 0.00 38.57 4.57
2757 2882 2.509786 GGCCCATGCATTTGTGCG 60.510 61.111 0.00 0.00 40.13 5.34
2758 2883 2.509786 GCCCATGCATTTGTGCGG 60.510 61.111 0.00 0.00 37.69 5.69
2759 2884 2.509786 CCCATGCATTTGTGCGGC 60.510 61.111 0.00 0.00 37.69 6.53
2760 2885 2.261981 CCATGCATTTGTGCGGCA 59.738 55.556 0.00 0.00 42.43 5.69
2761 2886 1.374378 CCATGCATTTGTGCGGCAA 60.374 52.632 3.23 0.00 41.43 4.52
2762 2887 1.355796 CCATGCATTTGTGCGGCAAG 61.356 55.000 3.23 0.00 41.43 4.01
2763 2888 0.668096 CATGCATTTGTGCGGCAAGT 60.668 50.000 3.23 0.00 41.43 3.16
2764 2889 0.668096 ATGCATTTGTGCGGCAAGTG 60.668 50.000 3.23 10.50 44.51 3.16
2765 2890 2.023223 GCATTTGTGCGGCAAGTGG 61.023 57.895 3.23 0.00 42.72 4.00
2766 2891 1.363443 CATTTGTGCGGCAAGTGGT 59.637 52.632 3.23 0.00 39.99 4.16
2767 2892 0.940519 CATTTGTGCGGCAAGTGGTG 60.941 55.000 3.23 0.00 39.99 4.17
2768 2893 2.086251 ATTTGTGCGGCAAGTGGTGG 62.086 55.000 3.23 0.00 38.47 4.61
2770 2895 4.947147 GTGCGGCAAGTGGTGGGA 62.947 66.667 3.23 0.00 0.00 4.37
2771 2896 4.196778 TGCGGCAAGTGGTGGGAA 62.197 61.111 0.00 0.00 0.00 3.97
2772 2897 3.365265 GCGGCAAGTGGTGGGAAG 61.365 66.667 0.00 0.00 0.00 3.46
2773 2898 2.113139 CGGCAAGTGGTGGGAAGT 59.887 61.111 0.00 0.00 0.00 3.01
2774 2899 2.260869 CGGCAAGTGGTGGGAAGTG 61.261 63.158 0.00 0.00 0.00 3.16
2775 2900 1.152756 GGCAAGTGGTGGGAAGTGT 60.153 57.895 0.00 0.00 0.00 3.55
2776 2901 1.455383 GGCAAGTGGTGGGAAGTGTG 61.455 60.000 0.00 0.00 0.00 3.82
2777 2902 1.455383 GCAAGTGGTGGGAAGTGTGG 61.455 60.000 0.00 0.00 0.00 4.17
2778 2903 0.823356 CAAGTGGTGGGAAGTGTGGG 60.823 60.000 0.00 0.00 0.00 4.61
2779 2904 0.991355 AAGTGGTGGGAAGTGTGGGA 60.991 55.000 0.00 0.00 0.00 4.37
2780 2905 1.073199 GTGGTGGGAAGTGTGGGAG 59.927 63.158 0.00 0.00 0.00 4.30
2781 2906 1.385347 TGGTGGGAAGTGTGGGAGT 60.385 57.895 0.00 0.00 0.00 3.85
2782 2907 1.073199 GGTGGGAAGTGTGGGAGTG 59.927 63.158 0.00 0.00 0.00 3.51
2783 2908 1.415672 GGTGGGAAGTGTGGGAGTGA 61.416 60.000 0.00 0.00 0.00 3.41
2784 2909 0.035458 GTGGGAAGTGTGGGAGTGAG 59.965 60.000 0.00 0.00 0.00 3.51
2785 2910 0.105194 TGGGAAGTGTGGGAGTGAGA 60.105 55.000 0.00 0.00 0.00 3.27
2786 2911 0.321996 GGGAAGTGTGGGAGTGAGAC 59.678 60.000 0.00 0.00 0.00 3.36
2787 2912 0.321996 GGAAGTGTGGGAGTGAGACC 59.678 60.000 0.00 0.00 0.00 3.85
2788 2913 1.343069 GAAGTGTGGGAGTGAGACCT 58.657 55.000 0.00 0.00 0.00 3.85
2789 2914 1.273886 GAAGTGTGGGAGTGAGACCTC 59.726 57.143 0.00 0.00 0.00 3.85
2790 2915 0.485099 AGTGTGGGAGTGAGACCTCT 59.515 55.000 0.00 0.00 0.00 3.69
2791 2916 1.133009 AGTGTGGGAGTGAGACCTCTT 60.133 52.381 0.00 0.00 0.00 2.85
2792 2917 1.694696 GTGTGGGAGTGAGACCTCTTT 59.305 52.381 0.00 0.00 0.00 2.52
2793 2918 2.897969 GTGTGGGAGTGAGACCTCTTTA 59.102 50.000 0.00 0.00 0.00 1.85
2794 2919 3.515901 GTGTGGGAGTGAGACCTCTTTAT 59.484 47.826 0.00 0.00 0.00 1.40
2795 2920 4.710375 GTGTGGGAGTGAGACCTCTTTATA 59.290 45.833 0.00 0.00 0.00 0.98
2796 2921 5.187186 GTGTGGGAGTGAGACCTCTTTATAA 59.813 44.000 0.00 0.00 0.00 0.98
2797 2922 5.422331 TGTGGGAGTGAGACCTCTTTATAAG 59.578 44.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.037697 AATGACCGCTGCTCACGTAA 60.038 50.000 0.00 0.00 0.00 3.18
1 2 0.735978 CAATGACCGCTGCTCACGTA 60.736 55.000 0.00 0.00 0.00 3.57
2 3 2.029288 CAATGACCGCTGCTCACGT 61.029 57.895 0.00 0.00 0.00 4.49
3 4 2.780643 CAATGACCGCTGCTCACG 59.219 61.111 0.00 0.00 0.00 4.35
4 5 2.482374 GCAATGACCGCTGCTCAC 59.518 61.111 0.00 0.00 35.62 3.51
5 6 3.120385 CGCAATGACCGCTGCTCA 61.120 61.111 0.00 0.00 36.38 4.26
6 7 3.088500 GACGCAATGACCGCTGCTC 62.089 63.158 0.00 0.00 36.38 4.26
7 8 3.121030 GACGCAATGACCGCTGCT 61.121 61.111 0.00 0.00 36.38 4.24
8 9 4.166011 GGACGCAATGACCGCTGC 62.166 66.667 0.00 0.00 35.14 5.25
21 22 4.143333 AATGAGTCGCCCCGGACG 62.143 66.667 0.73 6.79 41.81 4.79
22 23 2.202892 GAATGAGTCGCCCCGGAC 60.203 66.667 0.73 0.00 37.19 4.79
23 24 3.833645 CGAATGAGTCGCCCCGGA 61.834 66.667 0.73 0.00 44.14 5.14
58 59 6.067217 AGTTTACGGAGGGAGTACTTACTA 57.933 41.667 0.00 0.00 36.50 1.82
59 60 4.928263 AGTTTACGGAGGGAGTACTTACT 58.072 43.478 0.00 0.00 39.71 2.24
60 61 6.759497 TTAGTTTACGGAGGGAGTACTTAC 57.241 41.667 0.00 0.00 0.00 2.34
62 63 9.646522 TTATATTAGTTTACGGAGGGAGTACTT 57.353 33.333 0.00 0.00 0.00 2.24
63 64 9.646522 TTTATATTAGTTTACGGAGGGAGTACT 57.353 33.333 0.00 0.00 0.00 2.73
129 130 7.653713 CGACAGTTGGACTATTAATCTGCTTAT 59.346 37.037 0.00 0.00 0.00 1.73
149 150 0.402504 AGAGTCTCCAGTCCGACAGT 59.597 55.000 0.40 0.00 32.68 3.55
153 154 1.629353 ACACTAGAGTCTCCAGTCCGA 59.371 52.381 0.00 0.00 0.00 4.55
154 155 2.011222 GACACTAGAGTCTCCAGTCCG 58.989 57.143 12.51 0.00 35.65 4.79
155 156 3.074675 TGACACTAGAGTCTCCAGTCC 57.925 52.381 19.21 0.00 39.27 3.85
166 167 6.863275 TCGATAGATTTTGCTTGACACTAGA 58.137 36.000 0.00 0.00 42.67 2.43
184 185 5.455849 CGTCACCTGTTTTATCTGTCGATAG 59.544 44.000 2.20 2.20 33.85 2.08
186 187 4.082408 TCGTCACCTGTTTTATCTGTCGAT 60.082 41.667 0.00 0.00 0.00 3.59
187 188 3.253921 TCGTCACCTGTTTTATCTGTCGA 59.746 43.478 0.00 0.00 0.00 4.20
188 189 3.364023 GTCGTCACCTGTTTTATCTGTCG 59.636 47.826 0.00 0.00 0.00 4.35
189 190 4.304110 TGTCGTCACCTGTTTTATCTGTC 58.696 43.478 0.00 0.00 0.00 3.51
190 191 4.330944 TGTCGTCACCTGTTTTATCTGT 57.669 40.909 0.00 0.00 0.00 3.41
191 192 4.509970 TGTTGTCGTCACCTGTTTTATCTG 59.490 41.667 0.00 0.00 0.00 2.90
192 193 4.510340 GTGTTGTCGTCACCTGTTTTATCT 59.490 41.667 0.00 0.00 0.00 1.98
193 194 4.271533 TGTGTTGTCGTCACCTGTTTTATC 59.728 41.667 0.00 0.00 35.25 1.75
194 195 4.034742 GTGTGTTGTCGTCACCTGTTTTAT 59.965 41.667 0.00 0.00 35.25 1.40
195 196 3.371591 GTGTGTTGTCGTCACCTGTTTTA 59.628 43.478 0.00 0.00 35.25 1.52
196 197 2.160813 GTGTGTTGTCGTCACCTGTTTT 59.839 45.455 0.00 0.00 35.25 2.43
198 199 1.365699 GTGTGTTGTCGTCACCTGTT 58.634 50.000 0.00 0.00 35.25 3.16
199 200 0.804544 CGTGTGTTGTCGTCACCTGT 60.805 55.000 0.00 0.00 35.25 4.00
200 201 0.526739 TCGTGTGTTGTCGTCACCTG 60.527 55.000 0.00 0.00 35.25 4.00
201 202 0.387929 ATCGTGTGTTGTCGTCACCT 59.612 50.000 0.00 0.00 35.25 4.00
202 203 1.214367 AATCGTGTGTTGTCGTCACC 58.786 50.000 0.00 0.00 35.25 4.02
203 204 3.313274 AAAATCGTGTGTTGTCGTCAC 57.687 42.857 0.00 0.00 36.48 3.67
204 205 3.125487 ACAAAAATCGTGTGTTGTCGTCA 59.875 39.130 0.00 0.00 28.08 4.35
205 206 3.477090 CACAAAAATCGTGTGTTGTCGTC 59.523 43.478 0.00 0.00 41.22 4.20
227 228 0.168788 ATGCATGTGCGTTGTGCTAC 59.831 50.000 0.00 0.00 46.63 3.58
254 255 1.770110 AAGATGGATAGCGGGGCCA 60.770 57.895 4.39 0.00 35.91 5.36
267 268 1.416813 GCTCTGCGTCGACCAAGATG 61.417 60.000 10.58 8.20 0.00 2.90
282 283 2.121385 TGTCCCTCCAGCTGCTCT 59.879 61.111 8.66 0.00 0.00 4.09
304 306 1.390664 CGATCGACGTTACGTTGCGT 61.391 55.000 19.21 15.15 41.37 5.24
305 307 1.121850 TCGATCGACGTTACGTTGCG 61.122 55.000 19.21 17.09 41.37 4.85
306 308 0.976963 TTCGATCGACGTTACGTTGC 59.023 50.000 19.26 6.49 41.37 4.17
307 309 2.024875 CAGTTCGATCGACGTTACGTTG 59.975 50.000 19.26 18.09 41.37 4.10
308 310 2.236690 CAGTTCGATCGACGTTACGTT 58.763 47.619 19.26 0.00 41.37 3.99
309 311 1.464687 CCAGTTCGATCGACGTTACGT 60.465 52.381 19.26 11.12 45.10 3.57
317 319 3.215151 AGCTTATCTCCAGTTCGATCGA 58.785 45.455 15.15 15.15 0.00 3.59
319 321 4.846779 AGAGCTTATCTCCAGTTCGATC 57.153 45.455 0.00 0.00 42.90 3.69
345 347 3.556365 GTCCTTGGATCGTTAAAGCTAGC 59.444 47.826 6.62 6.62 0.00 3.42
377 383 5.092968 AGGAGAGGAGAATTCCATGGATAG 58.907 45.833 17.06 0.00 46.64 2.08
532 555 3.407967 TCAATCGGCCCAGGGGTC 61.408 66.667 7.91 2.82 37.65 4.46
555 578 1.298488 GTAGCTAGGTCGACAGCGC 60.298 63.158 18.91 15.15 42.74 5.92
579 605 4.148825 CGGTTCTCGGGAGGCCAG 62.149 72.222 5.01 0.00 34.75 4.85
799 835 2.352001 CCGTCGTCGCTGTATCGG 60.352 66.667 0.00 0.00 35.54 4.18
950 999 2.155279 TCGTCAGAGACAGAACTCCAG 58.845 52.381 0.00 0.00 37.60 3.86
1386 1441 2.419021 GGCATGCATGTGCTGGTTAATT 60.419 45.455 26.79 0.00 44.45 1.40
1387 1442 1.137479 GGCATGCATGTGCTGGTTAAT 59.863 47.619 26.79 0.00 44.45 1.40
1388 1443 0.531657 GGCATGCATGTGCTGGTTAA 59.468 50.000 26.79 0.00 44.45 2.01
1389 1444 0.611340 TGGCATGCATGTGCTGGTTA 60.611 50.000 26.79 3.38 44.45 2.85
1400 1455 1.889262 GCATGGAGGATATGGCATGCA 60.889 52.381 21.36 6.13 43.22 3.96
1428 1487 2.223409 TGAACTAATGATCGACGACCGG 60.223 50.000 0.00 0.00 39.14 5.28
1445 1504 4.204573 GCGACTCACGTATCTGTAATGAAC 59.795 45.833 0.00 0.00 44.60 3.18
1446 1505 4.348656 GCGACTCACGTATCTGTAATGAA 58.651 43.478 0.00 0.00 44.60 2.57
1447 1506 3.545426 CGCGACTCACGTATCTGTAATGA 60.545 47.826 0.00 0.00 44.60 2.57
1448 1507 2.714480 CGCGACTCACGTATCTGTAATG 59.286 50.000 0.00 0.00 44.60 1.90
1449 1508 2.353889 ACGCGACTCACGTATCTGTAAT 59.646 45.455 15.93 0.00 43.02 1.89
1450 1509 1.733912 ACGCGACTCACGTATCTGTAA 59.266 47.619 15.93 0.00 43.02 2.41
1451 1510 1.061566 CACGCGACTCACGTATCTGTA 59.938 52.381 15.93 0.00 42.96 2.74
1452 1511 0.179197 CACGCGACTCACGTATCTGT 60.179 55.000 15.93 0.00 42.96 3.41
1461 1520 0.460109 ATTAGCATGCACGCGACTCA 60.460 50.000 21.98 7.72 36.85 3.41
1469 1528 1.062587 GACGACACCATTAGCATGCAC 59.937 52.381 21.98 0.00 0.00 4.57
1596 1655 0.041312 CGCAGCTGCTAACGTTGTTT 60.041 50.000 34.22 0.00 39.32 2.83
1618 1677 1.202627 GCTCTCATCCTTCGCCTTCAT 60.203 52.381 0.00 0.00 0.00 2.57
1620 1679 0.873743 CGCTCTCATCCTTCGCCTTC 60.874 60.000 0.00 0.00 0.00 3.46
1621 1680 1.142748 CGCTCTCATCCTTCGCCTT 59.857 57.895 0.00 0.00 0.00 4.35
1622 1681 2.055042 ACGCTCTCATCCTTCGCCT 61.055 57.895 0.00 0.00 0.00 5.52
1710 1769 4.308458 TCGTGCAGGTCAACCCCG 62.308 66.667 6.26 0.00 36.42 5.73
1812 1871 3.734776 TCGACGTACACAGATGTAGTG 57.265 47.619 0.00 0.00 42.06 2.74
1923 2014 0.183492 GCTTGCATGTGGGATCCCTA 59.817 55.000 31.05 20.19 36.94 3.53
1924 2015 1.076485 GCTTGCATGTGGGATCCCT 60.076 57.895 31.05 8.97 36.94 4.20
1925 2016 1.380246 TGCTTGCATGTGGGATCCC 60.380 57.895 25.22 25.22 0.00 3.85
1986 2078 1.707239 GAGTCGACGGAGCAGATCGT 61.707 60.000 10.46 0.00 42.67 3.73
2037 2142 2.354305 AGACACGGTTCGCGTGAC 60.354 61.111 18.72 13.20 40.22 3.67
2074 2183 2.126071 CGACGACGCCACAGGAAT 60.126 61.111 0.00 0.00 0.00 3.01
2103 2212 6.127786 ACGTTCTCTATAGGTAACAGTGGTTC 60.128 42.308 14.52 0.00 38.45 3.62
2110 2221 7.086376 GTGAAACACGTTCTCTATAGGTAACA 58.914 38.462 14.52 0.00 37.13 2.41
2139 2253 0.461548 TTCTAGAGCGACATGGGCAG 59.538 55.000 12.69 2.95 0.00 4.85
2169 2283 0.969894 AGAGGAGAACACAGGAACGG 59.030 55.000 0.00 0.00 0.00 4.44
2223 2338 2.011349 CGCGTTCTGGATCGATCGG 61.011 63.158 18.81 13.79 0.00 4.18
2224 2339 2.639926 GCGCGTTCTGGATCGATCG 61.640 63.158 18.81 9.36 0.00 3.69
2247 2362 2.436292 CCTCTCGTCGTCTCCGGT 60.436 66.667 0.00 0.00 33.95 5.28
2265 2380 4.838486 CGACAGCGACGCTCCTCC 62.838 72.222 21.67 8.21 36.40 4.30
2437 2553 3.069318 GCCGAACCGTCCTCTCCT 61.069 66.667 0.00 0.00 0.00 3.69
2490 2615 0.474614 TCGTTTCCACCACCCATTGA 59.525 50.000 0.00 0.00 0.00 2.57
2491 2616 0.596082 GTCGTTTCCACCACCCATTG 59.404 55.000 0.00 0.00 0.00 2.82
2564 2689 1.275291 TCGAGTTGGAGTTGGCCTTAG 59.725 52.381 3.32 0.00 0.00 2.18
2565 2690 1.001633 GTCGAGTTGGAGTTGGCCTTA 59.998 52.381 3.32 0.00 0.00 2.69
2566 2691 0.250338 GTCGAGTTGGAGTTGGCCTT 60.250 55.000 3.32 0.00 0.00 4.35
2567 2692 1.371558 GTCGAGTTGGAGTTGGCCT 59.628 57.895 3.32 0.00 0.00 5.19
2568 2693 1.671379 GGTCGAGTTGGAGTTGGCC 60.671 63.158 0.00 0.00 0.00 5.36
2569 2694 2.027625 CGGTCGAGTTGGAGTTGGC 61.028 63.158 0.00 0.00 0.00 4.52
2570 2695 2.027625 GCGGTCGAGTTGGAGTTGG 61.028 63.158 0.00 0.00 0.00 3.77
2571 2696 2.372690 CGCGGTCGAGTTGGAGTTG 61.373 63.158 0.00 0.00 38.10 3.16
2572 2697 2.049433 CGCGGTCGAGTTGGAGTT 60.049 61.111 0.00 0.00 38.10 3.01
2573 2698 4.719369 GCGCGGTCGAGTTGGAGT 62.719 66.667 8.83 0.00 38.10 3.85
2583 2708 4.405173 GTTTGACGTCGCGCGGTC 62.405 66.667 31.69 28.23 46.52 4.79
2587 2712 3.475774 ATCCGTTTGACGTCGCGC 61.476 61.111 11.62 0.00 40.58 6.86
2588 2713 1.882682 AACATCCGTTTGACGTCGCG 61.883 55.000 11.62 14.55 40.58 5.87
2589 2714 0.179258 GAACATCCGTTTGACGTCGC 60.179 55.000 11.62 2.81 40.58 5.19
2590 2715 0.090676 CGAACATCCGTTTGACGTCG 59.909 55.000 11.62 0.00 40.58 5.12
2591 2716 0.179258 GCGAACATCCGTTTGACGTC 60.179 55.000 9.11 9.11 40.58 4.34
2592 2717 0.599204 AGCGAACATCCGTTTGACGT 60.599 50.000 0.00 0.00 40.58 4.34
2593 2718 0.511221 AAGCGAACATCCGTTTGACG 59.489 50.000 0.00 0.00 38.62 4.35
2594 2719 2.681152 AAAGCGAACATCCGTTTGAC 57.319 45.000 0.00 0.00 38.62 3.18
2595 2720 3.058777 GGTTAAAGCGAACATCCGTTTGA 60.059 43.478 0.00 0.00 38.62 2.69
2596 2721 3.231160 GGTTAAAGCGAACATCCGTTTG 58.769 45.455 0.00 0.00 39.25 2.93
2597 2722 2.879646 TGGTTAAAGCGAACATCCGTTT 59.120 40.909 0.00 0.00 34.75 3.60
2598 2723 2.496111 TGGTTAAAGCGAACATCCGTT 58.504 42.857 0.00 0.00 38.33 4.44
2599 2724 2.172851 TGGTTAAAGCGAACATCCGT 57.827 45.000 0.00 0.00 0.00 4.69
2600 2725 3.546002 TTTGGTTAAAGCGAACATCCG 57.454 42.857 0.00 0.00 0.00 4.18
2601 2726 5.060446 CGAAATTTGGTTAAAGCGAACATCC 59.940 40.000 0.00 0.00 0.00 3.51
2602 2727 5.627780 ACGAAATTTGGTTAAAGCGAACATC 59.372 36.000 0.00 0.00 0.00 3.06
2603 2728 5.525199 ACGAAATTTGGTTAAAGCGAACAT 58.475 33.333 0.00 0.00 0.00 2.71
2604 2729 4.922719 ACGAAATTTGGTTAAAGCGAACA 58.077 34.783 0.00 0.00 0.00 3.18
2605 2730 4.380678 GGACGAAATTTGGTTAAAGCGAAC 59.619 41.667 7.31 0.00 0.00 3.95
2606 2731 4.276431 AGGACGAAATTTGGTTAAAGCGAA 59.724 37.500 7.31 0.00 0.00 4.70
2607 2732 3.816523 AGGACGAAATTTGGTTAAAGCGA 59.183 39.130 7.31 0.00 0.00 4.93
2608 2733 4.155310 AGGACGAAATTTGGTTAAAGCG 57.845 40.909 7.31 0.00 0.00 4.68
2609 2734 5.176774 CCAAAGGACGAAATTTGGTTAAAGC 59.823 40.000 7.31 0.00 46.79 3.51
2610 2735 6.763303 CCAAAGGACGAAATTTGGTTAAAG 57.237 37.500 7.31 0.00 46.79 1.85
2617 2742 4.076394 TCCTACCCAAAGGACGAAATTTG 58.924 43.478 0.00 0.00 40.86 2.32
2618 2743 4.376225 TCCTACCCAAAGGACGAAATTT 57.624 40.909 0.00 0.00 40.86 1.82
2626 2751 1.200519 CCATCGTCCTACCCAAAGGA 58.799 55.000 0.00 0.00 43.58 3.36
2627 2752 0.180406 CCCATCGTCCTACCCAAAGG 59.820 60.000 0.00 0.00 38.06 3.11
2628 2753 0.180406 CCCCATCGTCCTACCCAAAG 59.820 60.000 0.00 0.00 0.00 2.77
2629 2754 0.548197 ACCCCATCGTCCTACCCAAA 60.548 55.000 0.00 0.00 0.00 3.28
2630 2755 0.979187 GACCCCATCGTCCTACCCAA 60.979 60.000 0.00 0.00 0.00 4.12
2631 2756 1.382146 GACCCCATCGTCCTACCCA 60.382 63.158 0.00 0.00 0.00 4.51
2632 2757 2.496291 CGACCCCATCGTCCTACCC 61.496 68.421 0.00 0.00 46.25 3.69
2633 2758 3.126528 CGACCCCATCGTCCTACC 58.873 66.667 0.00 0.00 46.25 3.18
2657 2782 2.125106 GCATCCCAGGGACACGTC 60.125 66.667 11.70 0.00 32.98 4.34
2658 2783 2.607750 AGCATCCCAGGGACACGT 60.608 61.111 11.70 0.00 32.98 4.49
2659 2784 2.124983 CAGCATCCCAGGGACACG 60.125 66.667 11.70 3.38 32.98 4.49
2660 2785 1.377725 CACAGCATCCCAGGGACAC 60.378 63.158 11.70 5.81 32.98 3.67
2661 2786 2.605607 CCACAGCATCCCAGGGACA 61.606 63.158 11.70 0.00 32.98 4.02
2662 2787 2.273449 CCACAGCATCCCAGGGAC 59.727 66.667 11.70 0.00 32.98 4.46
2663 2788 3.731728 GCCACAGCATCCCAGGGA 61.732 66.667 11.90 11.90 39.53 4.20
2664 2789 3.736224 AGCCACAGCATCCCAGGG 61.736 66.667 0.00 0.00 43.56 4.45
2665 2790 2.280404 ATCAGCCACAGCATCCCAGG 62.280 60.000 0.00 0.00 43.56 4.45
2666 2791 1.101635 CATCAGCCACAGCATCCCAG 61.102 60.000 0.00 0.00 43.56 4.45
2667 2792 1.077285 CATCAGCCACAGCATCCCA 60.077 57.895 0.00 0.00 43.56 4.37
2668 2793 1.826921 CCATCAGCCACAGCATCCC 60.827 63.158 0.00 0.00 43.56 3.85
2669 2794 0.178998 ATCCATCAGCCACAGCATCC 60.179 55.000 0.00 0.00 43.56 3.51
2670 2795 1.688772 AATCCATCAGCCACAGCATC 58.311 50.000 0.00 0.00 43.56 3.91
2671 2796 3.154710 CATAATCCATCAGCCACAGCAT 58.845 45.455 0.00 0.00 43.56 3.79
2672 2797 2.578786 CATAATCCATCAGCCACAGCA 58.421 47.619 0.00 0.00 43.56 4.41
2673 2798 1.884579 CCATAATCCATCAGCCACAGC 59.115 52.381 0.00 0.00 40.32 4.40
2674 2799 3.497103 TCCATAATCCATCAGCCACAG 57.503 47.619 0.00 0.00 0.00 3.66
2675 2800 3.499021 CCATCCATAATCCATCAGCCACA 60.499 47.826 0.00 0.00 0.00 4.17
2676 2801 3.087031 CCATCCATAATCCATCAGCCAC 58.913 50.000 0.00 0.00 0.00 5.01
2677 2802 2.042026 CCCATCCATAATCCATCAGCCA 59.958 50.000 0.00 0.00 0.00 4.75
2678 2803 2.731572 CCCATCCATAATCCATCAGCC 58.268 52.381 0.00 0.00 0.00 4.85
2679 2804 2.097825 GCCCATCCATAATCCATCAGC 58.902 52.381 0.00 0.00 0.00 4.26
2680 2805 3.733883 AGCCCATCCATAATCCATCAG 57.266 47.619 0.00 0.00 0.00 2.90
2681 2806 3.500836 CCAAGCCCATCCATAATCCATCA 60.501 47.826 0.00 0.00 0.00 3.07
2682 2807 3.094572 CCAAGCCCATCCATAATCCATC 58.905 50.000 0.00 0.00 0.00 3.51
2683 2808 2.225445 CCCAAGCCCATCCATAATCCAT 60.225 50.000 0.00 0.00 0.00 3.41
2684 2809 1.147608 CCCAAGCCCATCCATAATCCA 59.852 52.381 0.00 0.00 0.00 3.41
2685 2810 1.928868 CCCAAGCCCATCCATAATCC 58.071 55.000 0.00 0.00 0.00 3.01
2686 2811 1.260544 GCCCAAGCCCATCCATAATC 58.739 55.000 0.00 0.00 0.00 1.75
2687 2812 3.463045 GCCCAAGCCCATCCATAAT 57.537 52.632 0.00 0.00 0.00 1.28
2698 2823 2.656947 TGTCTTATATGGGCCCAAGC 57.343 50.000 32.58 17.18 38.76 4.01
2699 2824 6.378280 GGATTATTGTCTTATATGGGCCCAAG 59.622 42.308 32.58 22.28 0.00 3.61
2700 2825 6.252995 GGATTATTGTCTTATATGGGCCCAA 58.747 40.000 32.58 18.94 0.00 4.12
2701 2826 5.281506 GGGATTATTGTCTTATATGGGCCCA 60.282 44.000 30.92 30.92 0.00 5.36
2702 2827 5.044105 AGGGATTATTGTCTTATATGGGCCC 60.044 44.000 17.59 17.59 0.00 5.80
2703 2828 6.079712 AGGGATTATTGTCTTATATGGGCC 57.920 41.667 0.00 0.00 0.00 5.80
2704 2829 7.862675 ACTAGGGATTATTGTCTTATATGGGC 58.137 38.462 0.00 0.00 0.00 5.36
2716 2841 9.660180 GCCTTAGAGATTAACTAGGGATTATTG 57.340 37.037 0.00 0.00 38.73 1.90
2717 2842 8.827758 GGCCTTAGAGATTAACTAGGGATTATT 58.172 37.037 0.00 0.00 38.73 1.40
2718 2843 7.403522 GGGCCTTAGAGATTAACTAGGGATTAT 59.596 40.741 0.84 0.00 38.73 1.28
2719 2844 6.729569 GGGCCTTAGAGATTAACTAGGGATTA 59.270 42.308 0.84 0.00 38.73 1.75
2720 2845 5.548446 GGGCCTTAGAGATTAACTAGGGATT 59.452 44.000 0.84 0.00 38.73 3.01
2721 2846 5.095097 GGGCCTTAGAGATTAACTAGGGAT 58.905 45.833 0.84 0.00 38.73 3.85
2722 2847 4.078219 TGGGCCTTAGAGATTAACTAGGGA 60.078 45.833 4.53 0.00 38.73 4.20
2723 2848 4.232091 TGGGCCTTAGAGATTAACTAGGG 58.768 47.826 4.53 0.00 39.20 3.53
2724 2849 5.799213 CATGGGCCTTAGAGATTAACTAGG 58.201 45.833 4.53 0.00 0.00 3.02
2725 2850 5.221722 TGCATGGGCCTTAGAGATTAACTAG 60.222 44.000 4.53 0.00 40.13 2.57
2726 2851 4.658435 TGCATGGGCCTTAGAGATTAACTA 59.342 41.667 4.53 0.00 40.13 2.24
2727 2852 3.459598 TGCATGGGCCTTAGAGATTAACT 59.540 43.478 4.53 0.00 40.13 2.24
2728 2853 3.820557 TGCATGGGCCTTAGAGATTAAC 58.179 45.455 4.53 0.00 40.13 2.01
2729 2854 4.729552 ATGCATGGGCCTTAGAGATTAA 57.270 40.909 4.53 0.00 40.13 1.40
2730 2855 4.729552 AATGCATGGGCCTTAGAGATTA 57.270 40.909 4.53 0.00 40.13 1.75
2731 2856 3.607490 AATGCATGGGCCTTAGAGATT 57.393 42.857 4.53 0.00 40.13 2.40
2732 2857 3.228453 CAAATGCATGGGCCTTAGAGAT 58.772 45.455 4.53 0.00 40.13 2.75
2733 2858 2.025037 ACAAATGCATGGGCCTTAGAGA 60.025 45.455 4.53 0.00 40.13 3.10
2734 2859 2.100252 CACAAATGCATGGGCCTTAGAG 59.900 50.000 4.53 0.00 40.13 2.43
2735 2860 2.101783 CACAAATGCATGGGCCTTAGA 58.898 47.619 4.53 0.00 40.13 2.10
2736 2861 2.589798 CACAAATGCATGGGCCTTAG 57.410 50.000 4.53 0.00 40.13 2.18
2748 2873 0.940519 CACCACTTGCCGCACAAATG 60.941 55.000 0.00 0.00 37.96 2.32
2749 2874 1.363443 CACCACTTGCCGCACAAAT 59.637 52.632 0.00 0.00 37.96 2.32
2750 2875 2.780094 CCACCACTTGCCGCACAAA 61.780 57.895 0.00 0.00 37.96 2.83
2751 2876 3.215568 CCACCACTTGCCGCACAA 61.216 61.111 0.00 0.00 36.62 3.33
2753 2878 4.947147 TCCCACCACTTGCCGCAC 62.947 66.667 0.00 0.00 0.00 5.34
2754 2879 4.196778 TTCCCACCACTTGCCGCA 62.197 61.111 0.00 0.00 0.00 5.69
2755 2880 3.365265 CTTCCCACCACTTGCCGC 61.365 66.667 0.00 0.00 0.00 6.53
2756 2881 2.113139 ACTTCCCACCACTTGCCG 59.887 61.111 0.00 0.00 0.00 5.69
2757 2882 1.152756 ACACTTCCCACCACTTGCC 60.153 57.895 0.00 0.00 0.00 4.52
2758 2883 1.455383 CCACACTTCCCACCACTTGC 61.455 60.000 0.00 0.00 0.00 4.01
2759 2884 0.823356 CCCACACTTCCCACCACTTG 60.823 60.000 0.00 0.00 0.00 3.16
2760 2885 0.991355 TCCCACACTTCCCACCACTT 60.991 55.000 0.00 0.00 0.00 3.16
2761 2886 1.385347 TCCCACACTTCCCACCACT 60.385 57.895 0.00 0.00 0.00 4.00
2762 2887 1.073199 CTCCCACACTTCCCACCAC 59.927 63.158 0.00 0.00 0.00 4.16
2763 2888 1.385347 ACTCCCACACTTCCCACCA 60.385 57.895 0.00 0.00 0.00 4.17
2764 2889 1.073199 CACTCCCACACTTCCCACC 59.927 63.158 0.00 0.00 0.00 4.61
2765 2890 0.035458 CTCACTCCCACACTTCCCAC 59.965 60.000 0.00 0.00 0.00 4.61
2766 2891 0.105194 TCTCACTCCCACACTTCCCA 60.105 55.000 0.00 0.00 0.00 4.37
2767 2892 0.321996 GTCTCACTCCCACACTTCCC 59.678 60.000 0.00 0.00 0.00 3.97
2768 2893 0.321996 GGTCTCACTCCCACACTTCC 59.678 60.000 0.00 0.00 0.00 3.46
2769 2894 1.273886 GAGGTCTCACTCCCACACTTC 59.726 57.143 0.00 0.00 0.00 3.01
2770 2895 1.133009 AGAGGTCTCACTCCCACACTT 60.133 52.381 0.55 0.00 38.26 3.16
2771 2896 0.485099 AGAGGTCTCACTCCCACACT 59.515 55.000 0.55 0.00 38.26 3.55
2772 2897 1.343069 AAGAGGTCTCACTCCCACAC 58.657 55.000 0.55 0.00 38.26 3.82
2773 2898 2.103153 AAAGAGGTCTCACTCCCACA 57.897 50.000 0.55 0.00 38.26 4.17
2774 2899 5.908341 CTTATAAAGAGGTCTCACTCCCAC 58.092 45.833 0.55 0.00 38.26 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.