>input_sequence_68579
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--------ATGGAGAGCGACTGCCAGTTCCTGCTGGCGCCGCCGCCGCGCATGTACGCCGCGGCGGGGGACGACGGCCAG
TTCCTTCAGCAGCATCAGC------TGAACGGCGGCGGCGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCG
GTCGCTGGAGAGCACGTTCCACACGCGGCGCGCCAAGCTGGAGCCCCGGGAGAAGGCGGAGCTGGCGCGCCAGCTGGGGC
TGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGCTGGAGCAGGACTTCGCC
GAGCTGCGCGGCCATTACGACGCCCTCCGCGCTCGCGTCGAGTCGCTCAAGCAGGAAAAGCTCACTCTCGCCGCGCAGGT
AATTAACCAGCACATGCATGCCATATC----CTCCATGCTCCATGGCCGGTCGTCGATCATTAGTTCATTACAGATACGT
GAGTCGCGTGCATGCTAATGGTGTCGTCTGCTCGATGTGCAGCTGGAAGAGCTGAAGAAGAAGCTGAACGAGCGGCAGGA
CCAGAGCGCCAGCTGCGGCGGCTCTTGCGCCGTCGCCGACGTGGACGACAAGAGAAACAACGTTAGCAGCTGCGTCATGA
AGGCGAAGGATGAGAGCGTGGCGCCGGCGACAGACGTCTCGGACGGCTCAACTCCGGGCTGGTACGAGTATGACGACCAC
CTGGCGTACGGGGTTGACCTGCACGAGCCGTTCTGCGCCACTCCGGAGCTGTGGGAGACGTCATGGCCGCTGGTGGAGTG
GAACGCAGTGGCATGA----------------------------------------------------------------
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>chr6D_1_TraesCS6D01G222600
TTACGTGAGCAGCGGTCATTGCGTCCGGGGCGACTCATTCGCCAGCTTGCTCTTTGTATAGTAAGTACTCCCTCCGTAAA
CTAATATAAAATTATTTAGATCATTATTTATATAGAGAATACTTACTATATAAGCAGATTAATAGTCCAACTGTCGGACT
GGAGACTCTAGTGTCAAGCAAAATCTATCGACAGATAAAACAGGTGACGACAACACACGATTTTTGTGTAGCACAACGCA
CATGCATCGGTCGGTGGCCCCGCTATCCATCTTGGTCGACGCAGAGCAGCTGGAGGGACACGT-AACGCAACGTAACGTC
GATCGAACTGGAGATAAGCTCTTCTAG-CTAGCTTTA---ACGATCCAAGGACGAAGAGAAGCTATCCATGGAATTCTCC
TCTCCTCTCTTCT-----GCCGAGCCGTCATCTCGTCGCCGGCCTCCACAGCGACACCCTACCCAGACCTAGGGAGCCTA
GCCAGCGAGAAAACGGGGAGCCTCCCCT------------GCCACCTCGGCATCTCTTTCGGGAGAAGCCGTGCGACCCC
TGGGCCGATTGACATGGGCGCTGTCGACCTAGC---TACAGCGACTGGCCTCCCGA--GAACCGTGGCATCGTCGAACAT
TTCCTTCTTGAACAAAGTGTGCAGAACAAAGTTGCAAAAAAAGAGAGAGAGAGAGGATCTCGCACTCCAGCGATGCGCGC
ACACCACGTGTCCGGCCGGCGCGAGGCCCAAGT--------CGATCTGGAGACGGATAACCATTCCGTGCATATGCCCGC
GGGCCACCGGCCCGATGCGCGACACCTGTACGGCCCGATACAGCGACGACGGGCC----CGCGGGTTTCGATCGGCGCCA
CGTGTGCGCGTGCGTCGCGCAGTTCCGTTCTGGACCCGTATAAAACCGGGCCGGTGCACCACGTTCCAAACGCGCCACAG
ATGCACGCGCTACTAGCC---------AGCTTGGTTCACTGGAGTTCTGTCTCTGACGATTCGATTCCAATACCGCGACG
GCTCCGAAATGGAGAGCGACTGCCAGTTCCTGCTGGCGCCGCCGCCGCGCATGTACGCCGCGGCGGGGGACGACGGCCAG
TTCCTTCAGCAGCATCAGC------TGAACGGCGGCGGCGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCG
GTCGCTGGAGAGCACGTTCCACACGCGGCGCGCCAAGCTGGAGCCCCGGGAGAAGGCGGAGCTGGCGCGCCAGCTGGGGC
TGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGCTGGAGCAGGACTTCGCC
GAGCTGCGCGGCCATTACGACGCCCTCCGCGCTCGCGTCGAGTCGCTCAAGCAGGAAAAGCTCACTCTCGCCGCGCAGGT
AATTAACCAGCACATGCATGCCATATC----CTCCATGCTCCATGGCCGGTCGTCGATCATTAGTTCATTACAGATACGT
GAGTCGCGTGCATGCTAATGGTGTCGTCTGCTCGATGTGCAGCTGGAAGAGCTGAAGAAGAAGCTGAACGAGCGGCAGGA
CCAGAGCGCCAGCTGCGGCGGCTCTTGCGCCGTCGCCGACGTGGACGACAAGAGAAACAACGTTAGCAGCTGCGTCATGA
AGGCGAAGGATGAGAGCGTGGCGCCGGCGACAGACGTCTCGGACGGCTCAACTCCGGGCTGGTACGAGTATGACGACCAC
CTGGCGTACGGGGTTGACCTGCACGAGCCGTTCTGCGCCACTCCGGAGCTGTGGGAGACGTCATGGCCGCTGGTGGAGTG
GAACGCAGTGGCATGAACCAACGTTGCATACAC-----------TACATCTGTG------------TACGTCGATGCTGT
TGCTAG------CTTGTCTAGCTGGTTGATCCGGACTATGTAGATCA---GGTCGATCGGGCCGTCAGGTAGAATCGTAG
AACAGATAGGTAGTAGGGATCCCACATGCAAGCAGCCATGAAATCTG-ATGCGAGAAATCCTCCCGCCGACCGGCCGAC-
---GATCTGCTCCGTCGACTCTGGGATTCATG--------TCCGTG-AAAATGGCTTAAGAGTCACGCGAACCGTGTCT-
---GGCGGCTGTCACTCATGTGATTCCTGTGGCGTCGTCGCCGACGAAAGAG--AACCACT---GTTACCTATAGAGAAC
GTGTTTCACCAGCTGCCCATGTCGCTCTAGAAATCCATACATCCGTTCCTGTGTTCTCCTCTCGCGCGCGTGTTTATTTA
CTGT-GCCTGTGGGCGACCGATCGATCCAGAACGCGCGTGCACCGGAGACGACGAGAGGGGAGGAGC-GTCGCTGTCGCG
GCAACACAGGGGGGATGATTCGTATCGTCTGTTGCTGCTTTGGACGCCACCCGGCGTGTCGACCGTTGGTTCGTCCGGCA
CTGTCGCGCGCGGGGGCCAAAGACGAGAAAGAGGCAGCGGGAAAACGACGCGGGAGGCGCGGCTGTCGCCGGAGGAGAGG
ACGGTTCGGCGAGAAAAGGAAGTTGTGGATGCG---------TGGCCCGGCGGCTCAATGGGTGGTGGAAACGACTCACT
CACCTGGAAAGCGACCGCCCGCCACATCAAATAAGAAGCGCGCAGATGCTAAGGCCAACTCCAACTCGACCGCGCGACGT
CAAACGGATGTTCGCTTTAACCAAATTTCGTCCTTTGGGTAGGACGATGGGGTCGTCTCCGGACGTGTCCCTGGGATGCT
GTGGCTGATGGATTATGGATGGGCTTGGGCCCATATAAGACAATAATCCCTAGTTAATCTCTAAGGCCCATGCATTTGTG
CGGCAAGTGGTGGGAAGTGTGGGAGTGAGACCTCTTTATAAG
>chr6B_31
------------------------------CGACTCATTCGCCAGCTTGCTCTTTGTACT--------------------
---------------------------------------------CTATCTAAGCAGATTGACAGTCCACCTGATCGACT
GGAGACGGATAAACAGTCCACCTGATCGACTGGAGGCAGT------ACAACAACACACGATTTTTGTCTAGCACAACGCA
CATGTATCAGTCGGCGGCCCCGCTATCTATCTTGGTCGACGCGGAGCAGCTGGAGGGACACGT-A------CGTAACGCC
AATCGAACTGGAGATAAGCTCTTCTA-TCTAGCTTTA---ACGATCCAAGGACGAAGAGAAGATATCCATGGAATTCTCC
TCTCCTCTCTTCT----TGCCGAGCCGTCAGTGCGTC----GCCTGCACATCGACACCCTACCCAGACCTAGGGAGCCTA
GCCAGCGAGAAAACGGGGAGCCTCCCCT------------GCCACCTCGGCATCTCTTTCCGGAGAAGCCGTGCCACCCC
TGGGCCGATTGACATGGACGCTGTCGACCTAGCAGCTACAGCGATCGGCCTCCCGA--GAACCGTGGCATCGTCGAACAT
TTCCTTCTTGAACAAAGCGTGCAGAACAAAGTTGCAAAAAATAAGAGAGAGGATAACCATTC-------------CGTGC
ACACCACGTGTCCGGCCCGCGCGAGGCCCAAGTGGCCAAGTCGATCTCGAGACGGATAACCATTCCGTTCATATGCCCGC
GGGCCACCGGCCCGATGCGCGACACCTGTACGGCGCGATACAGCGACGGCGGGCCTGCGCGCGGGTTTCGATCGGCGCCA
CGCGTGCGCGTGCGTCGCG-----CCGTTCTGGACCCGTATAAAACCGG-CCGGCGCACCACGTTCCAAA--CGCCACCG
ATGCACGCGCTACTAGCC---------AGCTTGGTTCAGTGGAGTTCTGTCTCTGACGATTCGATTTCGGTACCGCGACG
GCTCCGAAATGGAGAGCGACTGCCAGTTCCTGCTGGCGCCGCCGCCGCGCATGTACGCCGCGCCGGGGGACGACGGCCAG
TTCCTTCAGCAGCAGCAGCAGCAGCTGAGCGGCGGCGGCGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCG
GTCGCTGGAGAGCACGTTCCACACGCGGCGCGCCAAGCTGGACCCCCGGGAGAAGGCGGAGCTGGCGCGCGAGCTGGGGC
TGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGCTGGAGCAGGACTTCGCG
GAGCTGCGCGGCCATTACGACGCCCTCCGCGCCCGCGTCGAGTCGCTCAAGCAGGAAAAGCTCACTCTCGCCGCGCAGGT
----AACCAACACACGCACGCCATATATATACTCCATCCTCCATGGTCGGTCGTCGATCATTA--------CAGATACG-
--------TGCATGCTAATGGT---GTCTGCTCGATGTGCAGCTGGAAGAGCTGAAGAAGAAGCTGGACGAGCGGCAAGA
CCAGAGCGCTAGCTGCGGCGGCTCTTGCGCCGTCGCCGACGTAGACGACAAGAGGGATAACGTTAGCAGCTGCGTCGC--
-GGCGAAGGATGAGAGCGCGGCGCCGGCGGCAGACGTGTCGGACGGCTCAACTCCGGGCTGGTACGAGTATGACGACCAC
CTGGTGTATGGGGTTGACCTGCACGAGCCGTTCTGCGCCACTCAGGAGCTGTGGGAGACGTCATGGCCGCTGGTGGAGTG
GAACGCAGTGGCATGAACCAACGTTGCATATACACGTACTACGGTACATCTGTGTACGCGTTCCTATACGTCGATGCTGT
TGCTGTTGCTGTCTTGTCTAGCTGGTTGATCCGGACCATGTAGATCATCAGGTCGATCGGACCGTCATGTAGAATCGTAG
AACAGATAGGTA----GGATCCCACATGCAAGCAGCCACGAAATCTACATGCGAGAAATCTTCCCGCCGGCCGGCCGGC-
---GATCTGCTTCGTCGACTCCGGGATTCATGAGATCATGTCCGTG-AAAATGGCTTTAGAATCACGCGCAGCGTCTCGA
TCCGGCGGCTGTCACTCATGTGGTTCCTGTCGCGCCGTCGCCGACGAAAGAAAAAACCACA---GTTACCTGTAGAGAAC
GTGTTTCACCAGTTGCCCATGTCGCTCTAGAAATCCATACATTCGTTCCTGTGTTCTCCTCTGACGCGGGTGCTATTTTA
CTGTGGCCTGCGGGCGATGGATTGATCCAGAACGCGCGTGCGCCGGAGACGACGAGAGGAGTGTCGCTGTCGCTGTCGCG
GCACCACAGGGGGGGTGATTCGTATCGTCTGTTGCTGCTTTGGACGCCACCCGGCGTGTCGAGCGTTCGTTCGTCCAGCA
CTGTCGCGCGCGGGGGCCAAAGACGAGAAAGAGGCAGCGGGAAAATGACGCGGGAGGCGCGGCTGTCGCCGGGGGAGAGG
ACGGTTCGGCGAGAAAAGGAAGTTGTGGATGCGACTCATGCGTGGCCCGGCGGCCGAATGGGTGGCGGAAACGACTCACT
CACCTGGAAAACGACCGCCCGCCGCATCAAATGAGAAGCGCGCAGATG--------------------------------
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>chr6A_269
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----------------------------ATCTTGGTCGACGCGGAGCAGCTGGAGGGACACGTGA------CGCAACGCC
AATCGAACTGGAGATAAGCTCTTTTAATCTAGCTTTAACGACGATCCAAAGACGAAGAGAAGATGTCCATGGAATTCTCC
TCTCCTCTCCTCTCTTCTGCCGAGCCGTCATCTCGTCGCCGGCCTCCACAGCGACACCCTACCCAGACCTAGGGCGCCCA
GCCAGCGAGAAAACGGGGAGCCCCCCAGGCAACGTGACAAGCCACCTCGGCATCTCTTCCGGGAGAAGCCGT--------
---GCCGATCGACATGGACGCTGTCGACCTAGC---TACAGCGATTGGCCTCCCCGCGGAACCGTGGCATCGT-------
--------TGAACAAAGTGTGCAGAAC-------------------GAGAGAGAGGATCTCGCACTACAGCCATGCCCGC
GCACCACGTGTCCGGCCCGCGCCAGGC--------CCAAGTCGATCTCGAGACGGATAACCATTCCGTGCATATGCCCGC
GGGCCACCGGCCCGGTGCGCGACACCTGTACGGCGCGATACAGCGACGGCGGGCC----CGCGGGTTTCGATCGGCGCCA
CGTGTGCGCGTGCGTCGCGCCGCTCCGTTCTGGACCCGTATAAAACCGGACCGGCGCGCCACGTTCCAAA--CGCCACAG
ATGCACGCCTGGTGCACGCGCTACCAAAGCTTGGTTCAGTGGAGTTCTCGCTCTGACGATTTGA------TACCGCGACG
GCTCCGAAATGGAGAGCGACCGCCAGTTCCTGCTGGCGCCGCCGCCGCCCATGCACGCCGCGGCGGGGGACGACGGCCAC
TTCCTTCAGCAGCAGCAGC------TGAGCGGCGGCGGCGGCGGCGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCG
GTCGCTGGAGAGCACGTTCCACACGCGGCGCGCCAAGCTGGAGCCCCGGGAGAAGGCGGAGCTGGCGCGTGAGCTGGGGC
TGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGCTGGAGCAGGACTTCGCG
GAGCTGCGCGGCCATTACGACGCCCTCCGCGCCCGCGTCGAGTCGCTCAAGCAGGAAAAGCTCACTCTCGCCGCGCAGGT
----AACCAGCACACGCATGCCATATC----CTCCATCCTCCATGGTCGGTCGTCGATCATTA--------CAGATACGC
GAGTCGCATGCATGCTAATGGCGTCGTCTGCTCGATGTGCAGCTGGAAGAGCTGAAGAAGAAGCTGAACGAGCGGCAGGA
CCAGAGCGCAAGCTGCGACGCCGC---------CGCCGAGGTGGACGACAAGAGCAACAACGTTAGCAGCTGCATCGT--
-GGCGAAGGATGAGAGCGCGGCGCCGGCGGCAGACGTCTCGGACGGCTCAACTCCGGGCTGGTACGAGTATGACAACCAC
CTGGCGTATGGGGTTGACCTGCAGGAGCCGTTCTGCGCCACTCCGGAGCTGTGGGAGACGTCATGGCCGCTGGTGGAGTG
GAACGCAGTGGCATGAACCAACGCTGCATATGCA----------TACATCTGTG------------TACGTCGATGTTGT
TGCTGG------CTGGTCTAGCTGGTTGATCCGGACTATGTAGATCA---GGTCGATCGGGCCGTCAGGTAGAATCGTAG
AACAGATAGGTAG---GGATCCCACGTGCAAGCAGCCATGAAATCTACATGCGAGAAATCTTCCCGCCGGCCGGCCGGCC
GGCGATCTGCTCCGTCGACTCTGGGATTCATG--------TCCGTGAAAAATGGCTTAAGAATCACGCGCAGCGTGTCT-
---GGCGACTGTAACTCGTGTGGTTCCTGTCGCGCCGTCGCCGACGAAAAATATACACCCACTGGTTACCCATAGAGAAC
GTCTTTCACCAGTTGCTGTGT--------------------------------------TCTCGCGCGCGTGCTA--TTA
CTGTGGCCTGTAGGCGATGGATCGATCCAGAAGGCGCGTGCGCCGGAGACGACGAGAGGAGAGGAGC-GTCGCTGTCGCG
GCAGCACAGGGGGGATGATTCGTATCGTCTGTTGCTGCTTTGGACTCCACCCGGCGTGTCGACCGTTGGTTCGTCCGGCA
CTGTCGCGCGCGGGGGCCAAAGACGAGAAAGAAGCAGCGGGAAAACAACGCGGGAGGCGCGGCTGTCGCCGGGGGAGAGG
ACGGTTCGGCGAGAAAAAGAAGTTGTGGATGCG---------TGGCCCGGCGGCCGAATGGGTAGTGGAAACGACTCACT
CACCTAGAAAGCGACCGCCCGCCACATCAAGTGAGGAGCGCGCAGATG--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------S-S------S---SSS----
------SSSSSSSSSSSS--SSSSS-SSSSSSSSSSS-SSSSSSSS--S------------------S------------
----S---S-----S------------S--------------S----------------------SSSSSS-------S-
S-------------------------S-----------------------------------S-----------------
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--------------------------------------------------------------------------S-----
-----------------S--------------------------S-----------------------------------
-----------------------------------------SS-----------------------S----S--------
-----------------S-----------------------------S--------------------------------
----------------------------------S-------------S-------------------------------
--------------------S-S--------------------------S----S---------------SS--------
--------------------------------------S---------------------------S-SS----------
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--------------S-------------S---------------------------------------------------
----------------------------------------------------------------------S---------
-------------------------------------------------------------------------------S
--------------------------------S-----------------------------------------------
SSSS----------S----------------------S--------S----------------SSSSSSSS--------S
-------S------------------------------------------------------------------------
---------S--------------------------------------------S---------------------S-SS
S-----------------S----------S--------------------------------------------------
--------S-----------------------------------------------------------------------
------------------------------S-------------------------------------------------
----S---------------------------------------------------------------------------
-------------SSS------------------------------S-------------S--------S-------S--
-------------------------------------------------------------S-------S-S--------
----------------------S-------S---S----------------S--------S-------------------
------------S-----------------------------S-----------------------------S-SS----
-----------------SS----------------------S-----------------S--------------------
---S----------------------------------------------------------------------------
------------------------------------------------------------------------S-------
------------------------------------------------------SS------------------------
--------------------------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_20
TTACGTGAGCAGCGGTCATT------------------------------------------------------------
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>reverse_1655
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------------------------------------------------------AAACAACGTTAGCAGCTGCG------
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>forward_1505
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---------------------------------------------GCCGGTCGTCGATCATTAGT---------------
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>reverse_2890
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---------GTGGGAAGTGTGGGAGTGAG-------------
