Multiple sequence alignment - TraesCS6D01G217500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G217500 chr6D 100.000 2666 0 0 1 2666 307119351 307116686 0.000000e+00 4924.0
1 TraesCS6D01G217500 chr6B 91.920 2005 92 32 617 2603 474437843 474435891 0.000000e+00 2741.0
2 TraesCS6D01G217500 chr6B 93.889 540 20 7 1 537 474438369 474437840 0.000000e+00 802.0
3 TraesCS6D01G217500 chr6B 93.258 89 6 0 534 622 359864721 359864633 5.990000e-27 132.0
4 TraesCS6D01G217500 chr6B 91.398 93 8 0 528 620 474189195 474189287 7.750000e-26 128.0
5 TraesCS6D01G217500 chr6A 90.922 2093 108 27 617 2650 443422869 443420800 0.000000e+00 2737.0
6 TraesCS6D01G217500 chr6A 87.830 493 37 11 1 476 443423430 443422944 8.340000e-155 556.0
7 TraesCS6D01G217500 chr6A 94.318 88 5 0 533 620 93285701 93285788 4.630000e-28 135.0
8 TraesCS6D01G217500 chr6A 100.000 33 0 0 491 523 609316392 609316360 7.970000e-06 62.1
9 TraesCS6D01G217500 chr3D 94.382 89 5 0 534 622 436676898 436676986 1.290000e-28 137.0
10 TraesCS6D01G217500 chr3D 94.186 86 5 0 535 620 499945189 499945104 5.990000e-27 132.0
11 TraesCS6D01G217500 chr5B 94.186 86 5 0 535 620 62940322 62940407 5.990000e-27 132.0
12 TraesCS6D01G217500 chr4B 93.182 88 6 0 533 620 673204471 673204558 2.150000e-26 130.0
13 TraesCS6D01G217500 chr2B 93.182 88 6 0 534 621 34360695 34360608 2.150000e-26 130.0
14 TraesCS6D01G217500 chr4D 91.489 94 7 1 529 622 493742444 493742352 7.750000e-26 128.0
15 TraesCS6D01G217500 chr3A 97.500 40 1 0 479 518 560107735 560107774 4.760000e-08 69.4
16 TraesCS6D01G217500 chr2D 89.583 48 5 0 478 525 190575194 190575241 7.970000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G217500 chr6D 307116686 307119351 2665 True 4924.0 4924 100.0000 1 2666 1 chr6D.!!$R1 2665
1 TraesCS6D01G217500 chr6B 474435891 474438369 2478 True 1771.5 2741 92.9045 1 2603 2 chr6B.!!$R2 2602
2 TraesCS6D01G217500 chr6A 443420800 443423430 2630 True 1646.5 2737 89.3760 1 2650 2 chr6A.!!$R2 2649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 583 1.713297 AACACAAGTACTCCCTCCGT 58.287 50.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 1874 0.17668 CCTTCATCCCTCTCACCACG 59.823 60.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.010349 GGACCATTCTAGTTGAACCTTGG 58.990 47.826 4.50 4.50 37.98 3.61
70 71 3.582647 TGCTGGAATCACTCAGGTTTCTA 59.417 43.478 0.00 0.00 0.00 2.10
132 133 3.441572 GTCAGCCATTTCAGTAAGCACAT 59.558 43.478 0.00 0.00 0.00 3.21
140 141 6.742718 CCATTTCAGTAAGCACATACTTTTCG 59.257 38.462 0.00 0.00 33.90 3.46
288 291 6.920758 TGTGTTTTGTTGCTGTGGATAATTAC 59.079 34.615 0.00 0.00 0.00 1.89
368 371 8.428186 TGTAGGAACAATTATACGAACCATTC 57.572 34.615 0.00 0.00 30.91 2.67
388 406 6.708054 CCATTCGGAGCTTACTGAATTTCTAT 59.292 38.462 6.72 0.00 41.93 1.98
445 464 9.579932 TTTTTAGAAATGCCAAAAATATTGGGT 57.420 25.926 9.12 0.00 39.90 4.51
523 560 2.471815 ACATGGATCGGAGGGAGTAA 57.528 50.000 0.00 0.00 0.00 2.24
545 582 2.833631 AAACACAAGTACTCCCTCCG 57.166 50.000 0.00 0.00 0.00 4.63
546 583 1.713297 AACACAAGTACTCCCTCCGT 58.287 50.000 0.00 0.00 0.00 4.69
547 584 2.592102 ACACAAGTACTCCCTCCGTA 57.408 50.000 0.00 0.00 0.00 4.02
548 585 2.880443 ACACAAGTACTCCCTCCGTAA 58.120 47.619 0.00 0.00 0.00 3.18
549 586 3.233507 ACACAAGTACTCCCTCCGTAAA 58.766 45.455 0.00 0.00 0.00 2.01
550 587 3.257624 ACACAAGTACTCCCTCCGTAAAG 59.742 47.826 0.00 0.00 0.00 1.85
551 588 3.257624 CACAAGTACTCCCTCCGTAAAGT 59.742 47.826 0.00 0.00 0.00 2.66
552 589 4.460382 CACAAGTACTCCCTCCGTAAAGTA 59.540 45.833 0.00 0.00 0.00 2.24
553 590 5.047802 CACAAGTACTCCCTCCGTAAAGTAA 60.048 44.000 0.00 0.00 0.00 2.24
554 591 5.718607 ACAAGTACTCCCTCCGTAAAGTAAT 59.281 40.000 0.00 0.00 0.00 1.89
555 592 6.891908 ACAAGTACTCCCTCCGTAAAGTAATA 59.108 38.462 0.00 0.00 0.00 0.98
556 593 7.562821 ACAAGTACTCCCTCCGTAAAGTAATAT 59.437 37.037 0.00 0.00 0.00 1.28
557 594 9.071276 CAAGTACTCCCTCCGTAAAGTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
558 595 9.646522 AAGTACTCCCTCCGTAAAGTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
559 596 9.294614 AGTACTCCCTCCGTAAAGTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
560 597 9.289782 GTACTCCCTCCGTAAAGTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
561 598 8.406730 ACTCCCTCCGTAAAGTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
562 599 7.039853 ACTCCCTCCGTAAAGTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
563 600 6.072286 TCCCTCCGTAAAGTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
564 601 6.294397 CCCTCCGTAAAGTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
565 602 7.144000 CCTCCGTAAAGTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
566 603 7.650903 CCTCCGTAAAGTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
567 604 9.669353 CTCCGTAAAGTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
568 605 9.669353 TCCGTAAAGTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 0.00 1.85
569 606 9.669353 CCGTAAAGTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 0.00 2.10
583 620 8.635877 AGAGCGTTTAGATGACTATTTTAGTG 57.364 34.615 0.00 0.00 39.59 2.74
584 621 8.467598 AGAGCGTTTAGATGACTATTTTAGTGA 58.532 33.333 0.00 0.00 39.59 3.41
585 622 9.250624 GAGCGTTTAGATGACTATTTTAGTGAT 57.749 33.333 0.00 0.00 39.59 3.06
586 623 9.250624 AGCGTTTAGATGACTATTTTAGTGATC 57.749 33.333 6.14 6.14 45.85 2.92
691 728 7.532682 TTTACAGCACTGGATTTTGTTTTTC 57.467 32.000 2.21 0.00 34.19 2.29
694 731 3.454082 AGCACTGGATTTTGTTTTTCCCA 59.546 39.130 0.00 0.00 0.00 4.37
698 736 5.928264 CACTGGATTTTGTTTTTCCCAGATC 59.072 40.000 12.54 0.00 42.69 2.75
716 754 8.058235 TCCCAGATCCAAAACATATGACATTTA 58.942 33.333 10.38 0.00 0.00 1.40
781 819 3.926527 TCAGAAGACACGAACATGTATGC 59.073 43.478 0.00 0.00 31.24 3.14
883 927 7.332678 AGGAATTTCACAATTCTTTGCTTATGC 59.667 33.333 7.45 0.00 45.45 3.14
916 960 5.289675 GTCTGTTGAGTATTTCGTGATCAGG 59.710 44.000 9.16 9.16 0.00 3.86
947 991 3.845781 TCTGAGATTGATAACAGCCCC 57.154 47.619 0.00 0.00 0.00 5.80
1013 1067 0.249657 GCCCGGATGCAACAAAAACA 60.250 50.000 0.73 0.00 0.00 2.83
1074 1132 0.390340 GCACAATCCTCACTCGCTCA 60.390 55.000 0.00 0.00 0.00 4.26
1371 1439 3.633094 CTCCCTCACCAGCGACGTG 62.633 68.421 0.00 0.00 0.00 4.49
1590 1658 1.006102 CGAGTTCCAGCTCACCGTT 60.006 57.895 0.00 0.00 35.33 4.44
1692 1760 5.254901 CACTGTACCTACCTCTCTGTAACT 58.745 45.833 0.00 0.00 0.00 2.24
1693 1761 5.124138 CACTGTACCTACCTCTCTGTAACTG 59.876 48.000 0.00 0.00 0.00 3.16
1694 1762 5.222089 ACTGTACCTACCTCTCTGTAACTGT 60.222 44.000 0.00 0.00 0.00 3.55
1695 1763 5.251764 TGTACCTACCTCTCTGTAACTGTC 58.748 45.833 0.00 0.00 0.00 3.51
1729 1797 0.036294 GTAAGCCGACAGCCTTCCTT 60.036 55.000 0.00 0.00 45.47 3.36
1771 1839 3.120792 CAGCGTAGGCGTGTGTATATTT 58.879 45.455 1.05 0.00 46.35 1.40
1784 1874 4.083217 TGTGTATATTTTTCCGGTGTGTGC 60.083 41.667 0.00 0.00 0.00 4.57
1815 1905 2.119495 GGATGAAGGCTGAAGAGGGTA 58.881 52.381 0.00 0.00 0.00 3.69
1859 1949 2.719426 AGTTGATTGCTTGCTTGCTC 57.281 45.000 3.47 0.00 0.00 4.26
2146 2238 3.181510 CGGTTAGGCAACAAGTATCTTGC 60.182 47.826 9.06 0.00 41.79 4.01
2157 2249 5.831997 ACAAGTATCTTGCTTTTGGACAAC 58.168 37.500 9.06 0.00 0.00 3.32
2166 2258 4.130857 TGCTTTTGGACAACACGATAAGA 58.869 39.130 0.00 0.00 0.00 2.10
2167 2259 4.759693 TGCTTTTGGACAACACGATAAGAT 59.240 37.500 0.00 0.00 0.00 2.40
2168 2260 5.240623 TGCTTTTGGACAACACGATAAGATT 59.759 36.000 0.00 0.00 0.00 2.40
2444 2554 8.647796 TGGTACTATATACTTTCAGTGGAATGG 58.352 37.037 0.00 0.00 33.66 3.16
2445 2555 8.867097 GGTACTATATACTTTCAGTGGAATGGA 58.133 37.037 0.00 0.00 33.66 3.41
2465 2575 3.871594 GGAATGTTCCGAGTAACCTCATG 59.128 47.826 0.00 0.00 37.65 3.07
2486 2596 7.795047 TCATGGAGTTCTTTATATCAGCTCAA 58.205 34.615 0.00 0.00 0.00 3.02
2523 2633 7.976175 TGAACAACAATGTAAAACAGCACATTA 59.024 29.630 0.04 0.00 42.09 1.90
2529 2639 5.356882 TGTAAAACAGCACATTAGACAGC 57.643 39.130 0.00 0.00 0.00 4.40
2628 2739 3.262405 CACCCTACTACTTGGTGGCTTAA 59.738 47.826 0.00 0.00 44.64 1.85
2634 2745 9.263446 CCCTACTACTTGGTGGCTTAATATATA 57.737 37.037 0.00 0.00 0.00 0.86
2652 2763 2.586258 TAGAGAAGACAATGCGAGGC 57.414 50.000 0.00 0.00 0.00 4.70
2653 2764 0.901124 AGAGAAGACAATGCGAGGCT 59.099 50.000 0.00 0.00 0.00 4.58
2654 2765 2.103373 AGAGAAGACAATGCGAGGCTA 58.897 47.619 0.00 0.00 0.00 3.93
2655 2766 2.100584 AGAGAAGACAATGCGAGGCTAG 59.899 50.000 0.00 0.00 0.00 3.42
2656 2767 1.137872 AGAAGACAATGCGAGGCTAGG 59.862 52.381 0.00 0.00 0.00 3.02
2657 2768 0.462759 AAGACAATGCGAGGCTAGGC 60.463 55.000 8.55 8.55 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.839424 ACAGCCTACCAAGCATTTCC 58.161 50.000 0.00 0.00 0.00 3.13
70 71 3.350219 ACGGCACAAAAGGAGTATCAT 57.650 42.857 0.00 0.00 36.25 2.45
132 133 5.267776 GCTTGTGCTAAAACACGAAAAGTA 58.732 37.500 0.00 0.00 43.74 2.24
486 505 5.182190 TCCATGTTAATTGTCGCTGCTTTAA 59.818 36.000 0.00 0.00 0.00 1.52
494 531 2.869801 TCCGATCCATGTTAATTGTCGC 59.130 45.455 0.00 0.00 0.00 5.19
532 569 9.646522 TTATATTACTTTACGGAGGGAGTACTT 57.353 33.333 0.00 0.00 0.00 2.24
533 570 9.294614 CTTATATTACTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
534 571 9.289782 TCTTATATTACTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
535 572 9.512588 CTCTTATATTACTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
536 573 7.039853 GCTCTTATATTACTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
537 574 7.314393 GCTCTTATATTACTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
538 575 6.072286 CGCTCTTATATTACTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
539 576 6.091437 CGCTCTTATATTACTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
540 577 6.675987 ACGCTCTTATATTACTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
541 578 8.571461 AAACGCTCTTATATTACTTTACGGAG 57.429 34.615 0.00 0.00 0.00 4.63
542 579 9.669353 CTAAACGCTCTTATATTACTTTACGGA 57.331 33.333 0.00 0.00 0.00 4.69
543 580 9.669353 TCTAAACGCTCTTATATTACTTTACGG 57.331 33.333 0.00 0.00 0.00 4.02
557 594 9.088512 CACTAAAATAGTCATCTAAACGCTCTT 57.911 33.333 0.00 0.00 36.76 2.85
558 595 8.467598 TCACTAAAATAGTCATCTAAACGCTCT 58.532 33.333 0.00 0.00 36.76 4.09
559 596 8.630278 TCACTAAAATAGTCATCTAAACGCTC 57.370 34.615 0.00 0.00 36.76 5.03
560 597 9.250624 GATCACTAAAATAGTCATCTAAACGCT 57.749 33.333 0.00 0.00 34.00 5.07
561 598 9.250624 AGATCACTAAAATAGTCATCTAAACGC 57.749 33.333 2.55 0.00 43.56 4.84
592 629 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
598 635 9.838339 CACAATACTCCCTCTGTAAAGAAATAT 57.162 33.333 0.00 0.00 0.00 1.28
599 636 9.042450 TCACAATACTCCCTCTGTAAAGAAATA 57.958 33.333 0.00 0.00 0.00 1.40
600 637 7.824779 GTCACAATACTCCCTCTGTAAAGAAAT 59.175 37.037 0.00 0.00 0.00 2.17
601 638 7.159372 GTCACAATACTCCCTCTGTAAAGAAA 58.841 38.462 0.00 0.00 0.00 2.52
602 639 6.295688 GGTCACAATACTCCCTCTGTAAAGAA 60.296 42.308 0.00 0.00 0.00 2.52
603 640 5.187186 GGTCACAATACTCCCTCTGTAAAGA 59.813 44.000 0.00 0.00 0.00 2.52
604 641 5.187967 AGGTCACAATACTCCCTCTGTAAAG 59.812 44.000 0.00 0.00 0.00 1.85
605 642 5.046591 CAGGTCACAATACTCCCTCTGTAAA 60.047 44.000 0.00 0.00 0.00 2.01
606 643 4.466370 CAGGTCACAATACTCCCTCTGTAA 59.534 45.833 0.00 0.00 0.00 2.41
607 644 4.023980 CAGGTCACAATACTCCCTCTGTA 58.976 47.826 0.00 0.00 0.00 2.74
608 645 2.834549 CAGGTCACAATACTCCCTCTGT 59.165 50.000 0.00 0.00 0.00 3.41
609 646 2.834549 ACAGGTCACAATACTCCCTCTG 59.165 50.000 0.00 0.00 0.00 3.35
610 647 2.834549 CACAGGTCACAATACTCCCTCT 59.165 50.000 0.00 0.00 0.00 3.69
611 648 2.678190 GCACAGGTCACAATACTCCCTC 60.678 54.545 0.00 0.00 0.00 4.30
612 649 1.279271 GCACAGGTCACAATACTCCCT 59.721 52.381 0.00 0.00 0.00 4.20
613 650 1.279271 AGCACAGGTCACAATACTCCC 59.721 52.381 0.00 0.00 0.00 4.30
614 651 2.770164 AGCACAGGTCACAATACTCC 57.230 50.000 0.00 0.00 0.00 3.85
615 652 5.073311 TCTTAGCACAGGTCACAATACTC 57.927 43.478 0.00 0.00 0.00 2.59
691 728 6.720112 AATGTCATATGTTTTGGATCTGGG 57.280 37.500 1.90 0.00 0.00 4.45
698 736 8.706492 AAGCACATAAATGTCATATGTTTTGG 57.294 30.769 1.90 2.80 40.96 3.28
804 842 7.439108 ACAGTAAAAGGAGCATAGGAAGTAT 57.561 36.000 0.00 0.00 0.00 2.12
810 848 5.940470 ACTCAAACAGTAAAAGGAGCATAGG 59.060 40.000 0.00 0.00 31.37 2.57
811 849 6.621596 GCACTCAAACAGTAAAAGGAGCATAG 60.622 42.308 0.00 0.00 32.21 2.23
858 902 7.458677 GCATAAGCAAAGAATTGTGAAATTCC 58.541 34.615 7.41 0.00 38.97 3.01
883 927 8.017373 ACGAAATACTCAACAGACAATGAAATG 58.983 33.333 0.00 0.00 0.00 2.32
890 934 6.220201 TGATCACGAAATACTCAACAGACAA 58.780 36.000 0.00 0.00 0.00 3.18
891 935 5.778862 TGATCACGAAATACTCAACAGACA 58.221 37.500 0.00 0.00 0.00 3.41
916 960 2.548057 TCAATCTCAGAAAACGGTGCAC 59.452 45.455 8.80 8.80 0.00 4.57
947 991 1.134367 TCTGTCATCGTAAGCTTCCCG 59.866 52.381 0.00 7.22 37.18 5.14
1013 1067 5.186198 ACTGTAATATTTCTGGCGCTTTCT 58.814 37.500 7.64 0.00 0.00 2.52
1050 1108 1.078848 AGTGAGGATTGTGCGAGGC 60.079 57.895 0.00 0.00 0.00 4.70
1051 1109 0.803768 CGAGTGAGGATTGTGCGAGG 60.804 60.000 0.00 0.00 0.00 4.63
1074 1132 2.178106 AGAGGTGGAGGAACGGATAGAT 59.822 50.000 0.00 0.00 0.00 1.98
1107 1165 0.678950 GAGGAGTGCAGGATAGGAGC 59.321 60.000 0.00 0.00 0.00 4.70
1108 1166 2.238521 GAGAGGAGTGCAGGATAGGAG 58.761 57.143 0.00 0.00 0.00 3.69
1109 1167 1.133325 GGAGAGGAGTGCAGGATAGGA 60.133 57.143 0.00 0.00 0.00 2.94
1371 1439 2.745492 ACGTCGGACGAGGAGGAC 60.745 66.667 34.40 0.00 46.05 3.85
1656 1724 2.416972 GGTACAGTGGTCTCATTCGTCC 60.417 54.545 0.00 0.00 0.00 4.79
1692 1760 1.064003 ACTTGGCCATGTACAGGACA 58.936 50.000 22.02 12.15 44.12 4.02
1693 1761 3.270877 CTTACTTGGCCATGTACAGGAC 58.729 50.000 26.52 9.55 33.56 3.85
1694 1762 2.355716 GCTTACTTGGCCATGTACAGGA 60.356 50.000 26.52 13.95 0.00 3.86
1695 1763 2.017049 GCTTACTTGGCCATGTACAGG 58.983 52.381 26.52 20.04 0.00 4.00
1729 1797 6.201997 CGCTGCGGCCATTATTATTGTATATA 59.798 38.462 15.40 0.00 34.44 0.86
1771 1839 2.897846 CCACGCACACACCGGAAA 60.898 61.111 9.46 0.00 0.00 3.13
1784 1874 0.176680 CCTTCATCCCTCTCACCACG 59.823 60.000 0.00 0.00 0.00 4.94
1815 1905 2.238646 TGGTCATGCGTTCCTAATTCCT 59.761 45.455 0.00 0.00 0.00 3.36
1859 1949 0.977395 AGGAGGAACAAGGGAACGAG 59.023 55.000 0.00 0.00 0.00 4.18
2024 2114 7.157347 TCCTAGAAGCAGCAATGTGATTATAG 58.843 38.462 0.00 7.80 37.37 1.31
2094 2186 9.754382 TCCCTCGTAACAGAACATATATTTTAC 57.246 33.333 0.00 0.00 0.00 2.01
2100 2192 7.143340 CGAATTCCCTCGTAACAGAACATATA 58.857 38.462 0.00 0.00 34.08 0.86
2114 2206 0.177141 TGCCTAACCGAATTCCCTCG 59.823 55.000 0.00 0.00 38.58 4.63
2146 2238 8.479280 CAAAAATCTTATCGTGTTGTCCAAAAG 58.521 33.333 0.00 0.00 0.00 2.27
2157 2249 7.429340 GCATTACACTCCAAAAATCTTATCGTG 59.571 37.037 0.00 0.00 0.00 4.35
2314 2424 3.133901 TGTTCACTCTACAAGCCACAAGA 59.866 43.478 0.00 0.00 0.00 3.02
2465 2575 8.499403 AAGTTTGAGCTGATATAAAGAACTCC 57.501 34.615 0.00 0.00 0.00 3.85
2628 2739 6.379703 AGCCTCGCATTGTCTTCTCTATATAT 59.620 38.462 0.00 0.00 0.00 0.86
2634 2745 0.901124 AGCCTCGCATTGTCTTCTCT 59.099 50.000 0.00 0.00 0.00 3.10
2637 2748 1.576356 CCTAGCCTCGCATTGTCTTC 58.424 55.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.