>input_sequence_72361
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-------------ATGCAACAAAAACAGAAAGCGCCAGAAATATTACAGTACGCAACC----CTCGCGCCTCGCACAATC
CTCACTCGCTCATCTATCCGTTCCTCCACCTCTCGTTGCCCGGGGCTCCTATCCTGCACTCCTCTCCCGCGCGCCCACCA
CCTGTTCGACCCGACGCCCCGCCCCTCCACACGCGCCCCACATCCCAGTCGC----TCGCCGCCAATGGCAACGACCGCC
GCGGCCATGGCGCCCC------CCTCCACCTCCGCCTCCTCGGTCCTCCTCCTCCGCCGCCTCCCCTCCCCGGCCTCCGC
CGCCCCCCGCTGCTGCCGCCTCGGCCCGCCGCCCCGCCTCCGCACGGCCCGCCCGCGGGTCTCCCTCACCAGCGACGTGT
CCTCCTCGTCCGACGTGGCCGAGGAGGAGGCCGAGCACGCGCCCAAGGTCGGCAGGCGCGTGCGCGTCACGGCGCCCCTC
CGCGTCTACCACGTCGTCAAGGCGCCCGACCTGGACATCCAGGGCATGGAGGGCGTCATCAAGCAGTACGTCGGCGTCTG
GAAGGGCAAGCGCATCACCGCCAACTTCCCCTTCAAGGTCGAGTTCCAGCTCACCGTTGACACGCAGCCCAAGCCGGTCA
AGCTCTTCGTCCACCTACGCGAGGACGAGTTCGAGTACATCGGGGACGAATGA---------------------------
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>chr6D_1_TraesCS6D01G217500
CTAGGACCATTCTAGTTGAACCTTGGGAAATGCTTGGTAGGCTGTTGCTGCTGGAATCACTCAGGTTTCTATGATACTCC
TTTTGTGCCGTAATGAAAAGTTCATCTGCCGTCAGCCATTTCAGTAAGCACATACTTTTCGTGTTTTAGCACAAGCTTAC
GTAAATTCTTTGCACTTTGTGTACAAAATGACTTCTCCTTTTGGTACTGTTTGTTTCGGCGTAGAATTGCAAAACCGTTT
CTTGATCTAATCTTAA--TATCCAATGTGTTTTGTTGCTGTGGATAATTACGTTCAGGATGTGTGAACACCAACATGACA
GGACAATTTCTTAGCAGACCTGATTTGTAGGAACAATTATACGAACCATTCGGAGCTTACT---------------GAAT
TTCTATATATTAGAAATAGCTCCTGGGAGCAACTTTTTTTTAGAAATGCCAAAAATAT-TGGGTTTTTTTCATGTATTTA
TTCTTGTCCTTTCATTAAGTTGTAT------------------TAAAGCAGCGACAATTAACATGGATCGGAGGGAGTAA
AAAAACACAAGTACTCCCTCCGTAAAGTAATATAAGAGCGTTTAGATGACTATTTTAGTGATCTGAATACTCTTATATTT
CTTTACAGAGGGAGTATTGTGACCTGTGCTAAGAAAACAAGTTTATAGTGCTTAAAAAATGATTTTACAGCACTGGATTT
TGTTTTTCCCA-GATCCAAAACATATGACATTTATGTGCTTTAGCAAAACTGTTCTTTGTGACACTTTATAATCAGTCAG
AAGACACGAACATGTATGCTGTCAAACGAAGTCATTTTTTTATACTTCC---TATGCTCCTTTTACTGTTTGAG---TGC
GGAGCCAAAGCGTCACCCGCAGGAATTTCACAATTCTTTGCTTATGCATTTCATTGTCTGTTGAGTATTTCGTGATCAGG
TGCACCGTTTTCTGAGATTGATAACAGCCCCGGGAAGC-------TTACGATGACAGAGC---TACAAAATTCCGGACGT
TTCCGAAGCCCGGATGCAACAAAAACAGAAAGCGCCAGAAATATTACAGTACGCAACC----CTCGCGCCTCGCACAATC
CTCACTCGCTCATCTATCCGTTCCTCCACCTCTCGTTGCCCGGGGCTCCTATCCTGCACTCCTCTCCCGCGCGCCCACCA
CCTGTTCGACCCGACGCCCCGCCCCTCCACACGCGCCCCACATCCCAGTCGC----TCGCCGCCAATGGCAACGACCGCC
GCGGCCATGGCGCCCC------CCTCCACCTCCGCCTCCTCGGTCCTCCTCCTCCGCCGCCTCCCCTCCCCGGCCTCCGC
CGCCCCCCGCTGCTGCCGCCTCGGCCCGCCGCCCCGCCTCCGCACGGCCCGCCCGCGGGTCTCCCTCACCAGCGACGTGT
CCTCCTCGTCCGACGTGGCCGAGGAGGAGGCCGAGCACGCGCCCAAGGTCGGCAGGCGCGTGCGCGTCACGGCGCCCCTC
CGCGTCTACCACGTCGTCAAGGCGCCCGACCTGGACATCCAGGGCATGGAGGGCGTCATCAAGCAGTACGTCGGCGTCTG
GAAGGGCAAGCGCATCACCGCCAACTTCCCCTTCAAGGTCGAGTTCCAGCTCACCGTTGACACGCAGCCCAAGCCGGTCA
AGCTCTTCGTCCACCTACGCGAGGACGAGTTCGAGTACATCGGGGACGAATGAGACCACTGTACCTACCTCTCTGTAACT
GTCCTGTACATGGCCAAGTAAGCCGACAGCCTTCCTTATATACAATAATAATGGCCGCAGCGTAGGCGTGTGTATATTTT
TCCG----------------------GTGTGTGCGTGGTGAGAGGGATGAAGGCTGAAGAGGGTAGGAATTAGGAACGCA
TGACCAGGAAGTTGATTGCTTGCTTGCTCTCGTTCCCTTGTTCCTCCTCTAATTCAACATCTATTTTTTCTCAGATGTGG
GGAATTGTTCGGATAATGATGATTGATAGTTCTAAAATAACACCGATAATTTTGCTCTTCCTTGCAGCCTATGCTTGATA
ATTTTATTCCAAGAGCTTCTCTTAATCTGATTGCTATAATCACATTGCTGCTTCTAGGAATATGTAT-CCTTTATTTATT
GCATCTAGGCTATTTTTT-TAATTTGTAAAATATATGTTCTGTTACGAGGGAATTCGGTTAGGCAACAAGTATCTTGCTT
TTGGACAACACGATAAGATTTTTGGAGTGTAATGCTATATATACATCGATTTATATATTTTATATATTTTGTTCTTACTG
TAACCCTGTGAACTTGAACTTGGATGGCTAAAGTTCGTCTGAATTTGGAT------------------ACAAGAACATTC
ATGAAATAACTTCTCTAAATCCATCTTGTGGCTTGTAGAGTGAACAAACAGCTAAGGCTCTAAGCTAGGTTCTTGGCTGA
CCATAGTTAATCCTAAAATTTAGTTGCTTCCATTCATCATCAATCTATGGTACTATATACTTTCAGTGGAATGGAATGTT
CCGAGTAACCTCATGGAGTTCTTTATATCAGCTCAAACTTCCACATTGAACAACAATGTAAAACAGCACATTAGACAGCT
TTACATCAATATTCTTCTAAGAGAAATATATGCAGCCATACTGTACCTAGTT-ATAAACTTACCCTGAGCCTGAGGCACC
CTACTACTTGGTGGCTTAATATATAGAGAAGACAATGCGAGGCTAGGCCTCGGAAG
>chr6B_1
CTAGGACCATTCTAGTTGAACCTTGAGAAATGCTTGGTAGGCTGTTGCTGCTGGAATC--TCAGGTTTCTGTGATGCTCC
TTTTGTGCCGTAATGAAAAGTTCATCTGCCGTCAGCCATTTCAGTAAGCACACACTTTTCATGTTTTAGCACAAGCTTAC
GTAGATTCTTTGCACTTTGTGTACAAAATGACTTCTCCTTTCGGTGCTGTTTGTTTCGGCGTAGAATTGCAAAACCGTTT
CTTGATCTAATCTTATAGTATCCAATGTGTTTCGTTGCTGTGGATAATTAAGTTGAGGATGTGTGAACACCAACATGACA
GGACAATTTCTTAGCAGACCTGATTTGTAGGAACAATTATACGAACCATTTGGAGCTTACT---------------GAAT
TTCTAGATATTAGAAATGGCTCCTGGGAGCAACTTTTTTTTAGAAATGCTAAAAAAGGGTT---TTTGTACATGTATTTA
TTCTTGTCCTTTCATTAAGTTGTAC------------------TAAAG-----ACAATTAATATGGATCGGAGGGAGTAG
AAAAACACC-----------------------------------------------------------------------
------------AGTATTGTGGCCTGTGCTAAGAAAACAAGTTTATAGTGCTT-AAAAATGATTTTACAGCACTGGATTT
TGTTTTTTCCC-GAT-CAAAACATATGACATTT---------------------CTTTGTTACATTTTATAATCAGTCAG
AAGACATGAACATGTATGTTGTCAAACAAATTCATTTTTTTCTACTTTTAAATATG--CCTTTTACTGTTTGATGACTGC
GGAGCCAAGGCGTCAGCCCCACGAATTTCACAATTCTTTGCTTATGAATTTCACGGTCTGTTGAGTATTTCGTCATCATT
TGCACCGTTTTCTGAGGTTGATAACAGCCCTCGGAAGC-------TTACGATAACAGAGCTAGTACAAAATTCTGGACGT
TTCCGAAGCC-GGATGCAACAAAAACCGAAAGCGCCAGAAATATTACAGTACGCAACC----CTCGC--CTCGCACAATC
CTCACTCG----TCTATCCGTTCCTCCACCTCTCGTTGCTCGGGCTCCCTATCCTGCACTCCTCTCCCGCGCGCCCACCA
CCTGTTCGACCCGACGCCCCGCCCCTCCACACGCGCCCCACATTCCAGTCGC----TCGCCGCCAATGGCAACGACCGCC
GCGGCCATGGCACCCC------CCTCCACCTCCGCCTCCTCGGTCCTCCTCCTTCGCCGCCTCCCTTCCCCGACCTCCGC
GGCCCCCGGCTGCTGCCGCCTCGGCCCGCCGCCCCGCCTCCGCACGGCCCGCCCGCGGGTCTCCCTCACCAGCGACGTCT
CCTCCTCGTCCGACGTGGCCGAGGAGGAGGCCGAGCACGCGCCCAAGGTCGGCAGGCGCGTGCGCGTCACGGCGCCCCTC
CGCGTCTACCACGTCGTCAAGGCGCCCGACCTGGACATCCAGGGCATGGAGGGCGTCATCAAGCAGTACGTCGGCGTCTG
GAAGGGCAAGCGCATCACCGCCAACTTCCCCTTCAAGGTCGAGTTCCAGCTCACCGTCGACACGCAGCCCAAGCCGGTCA
AGCTCTTTGTCCACCTACGCGAGGACGAGTTCGAGTACATCGGCGACGAATGAGACCACTGTACCTACCTCTCTGTAACA
A--CTGTACATGGCCAAGTAAGCCGACCGCCTTCCTCATATACAATAATAATGGCCGCAGCGTAGGCGTGTGTATATTGT
TCCGGTGGA--------------TGTGTGTGTGAGTGGTGAGAGGGATGAAGGCTGAAGAGGGTTGGAATTAGGAACGCA
TGACCAGGAAGTTGATTGCTTGCTTGCTGTCGTTCCCTTGTTCCTCCTCTAATTCAACATCTATTTTTTCTCAGATGTGC
GGAATTGTTTGGATCATAATC---GATAGTTCTAAAATAACACCGATAATTTTGCTCTTCCTTGCAGCCAATGCTTGATA
ATTTTGTTCCAAGAGCTTATCTTAATCTGACTGGTATAATCACATTGTTGCTTCTAGGAATATGTAT-CCTTTATATATT
GAATCTAGGCTATTTTT-ATAATTTATATAAGATATTTTCTGTTATGAGGGAATTCGATTAGGCAATAAGTATCTTGTTT
TTGGACAATACGACAAGTG-TTTGGAGTGTAATGCTATATATACATCAATG---------TATATATTTTGGTCTTACTG
TAACCCTGTGAACTTGAACTTGGATGGCTAAAGTTCGTCTGAATTTGGAT------------------ACAAGAACATTC
ATGAAATAACTTCTCTAAACCCAACTTGTTGCTTGTAGAGTGAACAAACAGCTAAGGCTCTAAGGTAGGTTCCTGGCTGA
CCATAGGTAATCCTAAAATTTAGTTGCTTCCTTTCATCATCAATCTACGGTACTATATACTTTCAGTGGAAT-----GTT
CCGAGTAACCTCATAGAGTTCTTTATACCAGCTCATACTTCCACATTGAATAACAATGTAAAACAGCACATTGGACAGAT
TTATATC-ATATTCTTCTAAGAGAAATATATGCAGCCATACTGTACCTAGTTAATAAACTTACCCCTGAGCCTG------
--------------------------------------------------------
>chr6A_1
CTAGGACCGTTCTAGTTGAACCTTGAGAAATGCTTGGTAGGCTGTTGCTGCTGGAATCACTCAGGCTTCTGTGATACTCC
TTTTGTGCCGTAATGAAAAGTTCATCTGCTGTCAGCCGTTTCAGTAAGCACACACTTTTCCTGTTTTAGCACAAGTTTAT
GTAAATTCTTTGCACTTTGTTTACAAAATGACTTCTCCTTTTGGTAGTGTTTGTTTCGGCGTAGAATTGCAAAACCGCTT
GTTGATCTAATCTTAA--TATCCAATGTGTTTTGTTGTTGTGGATAATGAAGTTCAGTATGTGTGAGCAAGAACATGACA
GGACAATTTCTTACCAGGACTGATTTGTAGGAACAATTATATCTTCTCAAACTATTCACAGTCGACATGAGCTTAAGAAA
TTCTAGATATTAGAAATGGCTCCTGGGAGCAT-TTTTTTAAACAAATGCCAAGAATAC-TT---TTTTTACATGTATTTG
TTCTTGCCCTTTCAGTTGCTTGTAAATATTCACAAAGTTGTACTAAAGCAACGGCAATTAACATGGATCGGAGGGAGTAG
AAAAGCAA------------------------------------------------------------------------
------------AGTATTGTGACCTGTGCTAAGAAAACAAGTTTATAGTGCTTAAAAAATGATTTTACAGCACTGGATTT
TCTTTTTTCCCAGAT-CAAAACATATGACATTTCTGTGCTTTAGCAAAACTGTTCTTTGTGACACTTTATATTCAGTCAG
AAGACACGAACATGCATGTTGTCAAACGAAGCCATTTTTTTTTCCTTTTAAATATACTCCTTTTACTGTTTGAG---TGC
GGAGCCAAAGCGTCACCCGCATGAATTTCACAATCCTTTGCTTATGAATTTCACGGTCTGTCGAGTATTTCGTG-TCAGC
TCCACCGTTTTCTGAGATTGATAACAGCCCTGGGAAGTGGGAAGTTTACGATGACGGAGC---TACAAAATTCCGGACGT
TTCCGAAGCCCGGATGCAACAAAAACCGAAAGCGCCAGAAATATTGCAGTACGCAACCCTCTCTCGC--CTCGCACAATC
CTCACTCGCTCGTCTATCCGTTCCTCCGCCTCTCGTTGCCCGGGCTCCCTATCCTGCACTCCTCTCCCGCGCGCCCACCA
CCTGTTCGACCCGACGCCCCGCCCCTCCACACGCGCCCCACATTCCAGTCGCTCGCTCGCCGCCAATGGCAACGACCGCC
GCGGCCATGGCGCCCCCCTCCACCTCCACCTCCGCCTCCTCGGTCCTCCTCCTCCGCCGCCTCCCCTCCCCGGCCTCCGC
CGCCCAGCGCCGCTGCCGCCTCGGCCCGCCGCCCCGCCTCCGCGCCGCCCGCCCGCGGGTCTCCCTCACCAGCGACGTCT
CCTCCTCGTCCGACGTGGCCGAGGAGGAGGCCGAGCACGCGCCCAAGGTCGGCAGGCGCGTGCGCGTCACGGCGCCCCTC
CGCGTCTACCACGTCGTCAAGGCGCCCGACCTGGACATCCAGGGCATGGAGGGCGTCATCAAGCAGTACGTCGGCGTCTG
GAAGGGCAAGCGCATCACCGCCAACTTCCCCTTCAAGGTCGAGTTCCAGCTCACCGTCGACACCCAGCCCAAACCGGTCA
AGCTCTTCGTCCACCTACGCGAGGACGAGTTCGAGTACATCGCCGACGAATGAGACCACTGTACCTACCTCTCTGTAACA
A--CTGTACATGGCCAAGTAAGCCGACCGCCTTCCTCATATACAATAATAATGGCCGCAGCGTAGGCGTGTGTATATTGT
TCCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGAGAGGGATGAAGGCTGAAGAGGGTTGGAATTAGGAACGCA
TGACCAGGAAGTTGATTGCTTGCTTGCTGTCGTTCCCTTGTTCCTCCTCTAATTCAACATCTATTTTTTCTCAGATGTGG
GGAATTGTTCGGATAATGATGATTGATAGTTCTAAAATAACACAGAT-ATTTTGCTCTTCCTTGCAGCCTATGCTTGATA
ATTTCATTCCAAGAGCTTCTGTTAATCTGATTGGTATAATCACATTGTTGCTTCTAGGAAACGTGTCCCCTTCATTTATT
GAATCTAGGCTATTTTTTATAGTTTATAAAACATATGTTCTTTTATGAGGGAGTTCGGTTAGGCAACAAGTATCTTGTTT
TTGGCCAATACGATAAGTG-TTTGGAGTGTAAGGCTATATATACATCGATG---------TATATATTTTGTTCTTACTG
TAACCCTGTAAACTTGAACTCAGATGGCTAAAGTTCGTCTGAATTTGGATGGTCTATGTTGTATAAATACAAGAACATTC
TTGAATTAACTTCCAAA--------TTGTGGCTTGTAGAGTGAACAAACAGCTAAGACTCTAAGCTAGGTTCTCGGTTGA
CTGTAGGTAGTCCTAAAATTTAGTTGCTTCCATTCATTAT-AATCTATGGTATTATATACTTTCAGTGGAAT-----GTT
CAGAGTAACCTCATAGAGTTCTTTATATCAGCTCATACTTCCCCATTGAACAACAATGTGAAACAGCACATTGGACATAT
TTACGTCAATATTCTTCTAAGAGAAATGTATGCAGCCATACTGTACCTAGTT-ATGAACTTACCCTGAGCCTGAGGCACC
CTACTACTTGGTGGCTTATTATATGGACAAGACAATGCGA----------------
>SNPs
-------------------------S--------------------------------------------S---------
----------------------------------------------------S-------S-------------------
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--------------------------------------------------S-----------------------------
--------------------------------------------------S-----------------------------
-----S-----------S---------------------------------------S--SSSS-----S----------
------------------------S-------------------------S----------------------------S
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------------------------------------------
-------S--S----S-----------------S----------------------------------------------
------------------S----------------------S-----SS-------------------------------
---------------------S------------------------S------SS------------------------S
------------------------------S-------------------------------------------------
--------------------------S----------------------------------------SS-----------
-----------S--------------------------------SSS---------------------------------
-------------------------------------------S------------------------------------
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---------------------------------------------------------S----------------------
-------------------------------------------S-----------------------------------S
SSS------------------------S--------S-----------------------------------------S-
---------------------------------S------------------------------S---------------
----------------------------S---------------------------------------------------
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---------------------------------S-------------S--------------------------------
-S-----------------------S-----S-------------S-------------------------------S--
--------S--------SSS------------------------------SSSSSSSSSS--------------------
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-------------------S---S--------------------------------------------------------
------S-----------------------------------------------------------------SSSSS---
--------------S--------------------S------------------------------------S-----S-
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------------------S-----S--S------------SSSSSSSSSSSSSSSS
>forward_583
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---AACACAAGTACTCCCTCCGT---------------------------------------------------------
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>reverse_1874
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---------------------------------CGTGGTGAGAGGGATGAAGG---------------------------
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