Multiple sequence alignment - TraesCS6D01G188100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G188100 chr6D 100.000 3110 0 0 1 3110 255623711 255620602 0.000000e+00 5744.0
1 TraesCS6D01G188100 chr6A 94.575 3023 121 22 94 3110 328292181 328295166 0.000000e+00 4634.0
2 TraesCS6D01G188100 chr6B 97.556 2332 45 6 786 3110 350827990 350830316 0.000000e+00 3980.0
3 TraesCS6D01G188100 chr6B 90.583 223 20 1 479 701 350823271 350823492 8.430000e-76 294.0
4 TraesCS6D01G188100 chr6B 91.509 106 8 1 611 716 350823493 350823597 8.990000e-31 145.0
5 TraesCS6D01G188100 chr4B 82.405 341 51 7 42 374 317764481 317764142 3.920000e-74 289.0
6 TraesCS6D01G188100 chr2D 77.778 495 84 24 37 519 564469143 564468663 6.570000e-72 281.0
7 TraesCS6D01G188100 chr2D 97.143 35 0 1 2800 2833 119285601 119285635 1.200000e-04 58.4
8 TraesCS6D01G188100 chr3B 74.087 575 130 18 3 565 823284525 823283958 5.220000e-53 219.0
9 TraesCS6D01G188100 chr3B 73.933 445 96 17 51 485 659085337 659085771 8.930000e-36 161.0
10 TraesCS6D01G188100 chr3B 82.456 171 28 2 16 185 180809510 180809679 6.950000e-32 148.0
11 TraesCS6D01G188100 chr3B 72.089 541 129 18 42 571 409307457 409306928 3.230000e-30 143.0
12 TraesCS6D01G188100 chr3B 86.364 88 9 3 32 117 825852610 825852524 3.300000e-15 93.5
13 TraesCS6D01G188100 chr4D 82.422 256 36 7 12 259 212152637 212152891 6.750000e-52 215.0
14 TraesCS6D01G188100 chrUn 77.517 298 49 15 32 319 29795282 29794993 2.480000e-36 163.0
15 TraesCS6D01G188100 chr1B 88.235 68 8 0 1826 1893 61614059 61613992 7.150000e-12 82.4
16 TraesCS6D01G188100 chr7D 93.478 46 2 1 2799 2843 14996085 14996040 2.000000e-07 67.6
17 TraesCS6D01G188100 chr7D 92.857 42 2 1 2796 2836 4000549 4000590 3.350000e-05 60.2
18 TraesCS6D01G188100 chr5A 93.478 46 1 2 2793 2837 219133223 219133179 2.000000e-07 67.6
19 TraesCS6D01G188100 chr2A 95.122 41 0 2 2795 2834 494820365 494820404 2.590000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G188100 chr6D 255620602 255623711 3109 True 5744 5744 100.000 1 3110 1 chr6D.!!$R1 3109
1 TraesCS6D01G188100 chr6A 328292181 328295166 2985 False 4634 4634 94.575 94 3110 1 chr6A.!!$F1 3016
2 TraesCS6D01G188100 chr6B 350827990 350830316 2326 False 3980 3980 97.556 786 3110 1 chr6B.!!$F1 2324
3 TraesCS6D01G188100 chr3B 823283958 823284525 567 True 219 219 74.087 3 565 1 chr3B.!!$R2 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 651 0.249197 TCTCAGGATGCGCAGATTCG 60.249 55.000 18.32 3.02 34.76 3.34 F
749 756 1.059369 CGAGCTGCGTTTTCGGATG 59.941 57.895 0.00 0.00 43.61 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 1856 0.889186 GCTTGTCCTTGCGGGAGAAA 60.889 55.0 8.89 2.82 45.07 2.52 R
2589 2607 2.391616 TGCAGCTAATCTCACCACAG 57.608 50.0 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.691011 AGAGAACAGTTAGATCCCTCGC 59.309 50.000 0.00 0.00 0.00 5.03
22 23 2.691011 GAGAACAGTTAGATCCCTCGCT 59.309 50.000 0.00 0.00 0.00 4.93
24 25 4.475345 AGAACAGTTAGATCCCTCGCTAT 58.525 43.478 0.00 0.00 0.00 2.97
29 30 4.523173 CAGTTAGATCCCTCGCTATGGTAA 59.477 45.833 0.00 0.00 0.00 2.85
30 31 5.186021 CAGTTAGATCCCTCGCTATGGTAAT 59.814 44.000 0.00 0.00 0.00 1.89
31 32 5.186021 AGTTAGATCCCTCGCTATGGTAATG 59.814 44.000 0.00 0.00 0.00 1.90
35 36 1.344438 CCCTCGCTATGGTAATGAGCA 59.656 52.381 0.00 0.00 35.91 4.26
49 50 5.758784 GGTAATGAGCATAGTTGGAAGTACC 59.241 44.000 0.00 0.00 39.54 3.34
58 59 3.711849 TGGAAGTACCAGAGGGGAG 57.288 57.895 0.00 0.00 44.64 4.30
65 66 1.255667 TACCAGAGGGGAGTTCGCAC 61.256 60.000 0.00 0.00 41.15 5.34
72 73 4.324991 GGAGTTCGCACGGGGGTT 62.325 66.667 0.09 0.00 0.00 4.11
74 75 1.004679 GAGTTCGCACGGGGGTTTA 60.005 57.895 0.09 0.00 0.00 2.01
75 76 1.004200 AGTTCGCACGGGGGTTTAG 60.004 57.895 0.09 0.00 0.00 1.85
78 79 4.708386 CGCACGGGGGTTTAGCCA 62.708 66.667 0.00 0.00 39.65 4.75
80 81 2.045340 CACGGGGGTTTAGCCAGG 60.045 66.667 0.00 0.00 39.65 4.45
81 82 2.530916 ACGGGGGTTTAGCCAGGT 60.531 61.111 0.00 0.00 39.65 4.00
84 85 1.771646 GGGGGTTTAGCCAGGTTCA 59.228 57.895 0.00 0.00 39.65 3.18
92 94 4.785453 GCCAGGTTCAGGCCCTCG 62.785 72.222 0.00 0.00 46.50 4.63
95 97 2.203788 AGGTTCAGGCCCTCGTGA 60.204 61.111 0.00 0.00 35.54 4.35
96 98 2.047179 GGTTCAGGCCCTCGTGAC 60.047 66.667 0.00 0.00 36.90 3.67
110 112 0.742505 CGTGACGAGGTAATGCCCTA 59.257 55.000 0.00 0.00 38.26 3.53
112 114 1.479323 GTGACGAGGTAATGCCCTACA 59.521 52.381 0.00 0.00 38.26 2.74
117 119 2.289072 CGAGGTAATGCCCTACATCCTG 60.289 54.545 0.00 0.00 38.34 3.86
185 187 5.070180 ACAAGAGGATGATGATGGTGACTAG 59.930 44.000 0.00 0.00 0.00 2.57
192 194 3.254411 TGATGATGGTGACTAGCGAGATC 59.746 47.826 0.00 0.00 0.00 2.75
213 215 7.784037 AGATCTGTATCTCATGGAATAGATGC 58.216 38.462 0.00 4.58 38.04 3.91
219 221 8.775151 TGTATCTCATGGAATAGATGCCATAAT 58.225 33.333 1.40 0.36 42.81 1.28
267 270 2.224499 GGACGTGGGTTAGGGTTTACAA 60.224 50.000 0.00 0.00 0.00 2.41
287 290 5.420409 ACAAGTTTCCTAACCGATCTCATC 58.580 41.667 0.00 0.00 34.71 2.92
288 291 4.674281 AGTTTCCTAACCGATCTCATCC 57.326 45.455 0.00 0.00 34.71 3.51
289 292 4.030913 AGTTTCCTAACCGATCTCATCCA 58.969 43.478 0.00 0.00 34.71 3.41
290 293 4.120589 GTTTCCTAACCGATCTCATCCAC 58.879 47.826 0.00 0.00 0.00 4.02
405 409 0.462047 CCCTGACGCTGACCCAATAC 60.462 60.000 0.00 0.00 0.00 1.89
419 423 0.815615 CAATACCGAGCTTCCTGGCC 60.816 60.000 0.00 0.00 0.00 5.36
473 479 1.943507 GCCCTGAGCTTGTCTGAAGTC 60.944 57.143 0.00 0.00 38.99 3.01
485 491 1.270826 TCTGAAGTCTGGAGTCTTGCG 59.729 52.381 0.00 0.00 0.00 4.85
492 498 1.686587 TCTGGAGTCTTGCGTCTTTGA 59.313 47.619 0.00 0.00 0.00 2.69
528 534 1.379527 GGCTCCTTTTGTATCGGTGG 58.620 55.000 0.00 0.00 0.00 4.61
529 535 1.339727 GGCTCCTTTTGTATCGGTGGT 60.340 52.381 0.00 0.00 0.00 4.16
539 545 1.717791 TATCGGTGGTAGGCGACGTG 61.718 60.000 0.00 0.00 0.00 4.49
549 555 3.276846 GCGACGTGCACCTTTGGT 61.277 61.111 12.15 2.12 45.45 3.67
569 576 1.826385 ACCGGCTTCAGAATCTTTGG 58.174 50.000 0.00 0.00 0.00 3.28
581 588 3.815401 AGAATCTTTGGGTTCGTCAAGTG 59.185 43.478 0.00 0.00 0.00 3.16
594 601 1.134560 GTCAAGTGTACGGCCTCTAGG 59.865 57.143 0.00 0.00 38.53 3.02
595 602 0.460311 CAAGTGTACGGCCTCTAGGG 59.540 60.000 0.00 0.00 35.18 3.53
602 609 2.584391 CGGCCTCTAGGGGTATGGC 61.584 68.421 11.24 5.06 42.56 4.40
603 610 3.484793 GCCTCTAGGGGTATGGCC 58.515 66.667 11.24 0.00 37.81 5.36
637 644 0.857935 CTTTCGATCTCAGGATGCGC 59.142 55.000 0.00 0.00 34.76 6.09
644 651 0.249197 TCTCAGGATGCGCAGATTCG 60.249 55.000 18.32 3.02 34.76 3.34
648 655 2.602322 GGATGCGCAGATTCGGAGC 61.602 63.158 18.32 5.64 35.50 4.70
663 670 2.490509 TCGGAGCTTCGTGTTCTTCATA 59.509 45.455 15.46 0.00 0.00 2.15
666 673 3.860536 GGAGCTTCGTGTTCTTCATAGTC 59.139 47.826 0.00 0.00 0.00 2.59
671 678 2.159421 TCGTGTTCTTCATAGTCCTCGC 60.159 50.000 0.00 0.00 0.00 5.03
674 681 2.427453 TGTTCTTCATAGTCCTCGCCTC 59.573 50.000 0.00 0.00 0.00 4.70
688 695 2.657237 CCTCCGAGGCTTCACGTT 59.343 61.111 0.18 0.00 0.00 3.99
689 696 1.738099 CCTCCGAGGCTTCACGTTG 60.738 63.158 0.18 0.00 0.00 4.10
705 712 1.200716 CGTTGTGCATCTTCATGGCTT 59.799 47.619 0.00 0.00 0.00 4.35
708 715 1.089920 GTGCATCTTCATGGCTTCGT 58.910 50.000 0.00 0.00 0.00 3.85
709 716 1.089112 TGCATCTTCATGGCTTCGTG 58.911 50.000 0.00 0.00 0.00 4.35
729 736 2.639286 CTGCGTCTTTGCGGCTTT 59.361 55.556 0.00 0.00 37.81 3.51
749 756 1.059369 CGAGCTGCGTTTTCGGATG 59.941 57.895 0.00 0.00 43.61 3.51
755 762 1.128692 CTGCGTTTTCGGATGAAGTCC 59.871 52.381 0.00 0.00 43.61 3.85
923 931 2.779755 TGAATGGACCTGTACGCAAT 57.220 45.000 0.00 0.00 0.00 3.56
953 961 3.243704 GCAGACCTCGAAATCATCTAGCT 60.244 47.826 0.00 0.00 0.00 3.32
2296 2311 7.330262 ACTTGATTTTTGTGGTTGAACTCAAT 58.670 30.769 0.00 0.00 38.24 2.57
2443 2461 7.546250 AGGGGAAGTATAATATGAGTCTGTG 57.454 40.000 0.00 0.00 0.00 3.66
2444 2462 7.076446 AGGGGAAGTATAATATGAGTCTGTGT 58.924 38.462 0.00 0.00 0.00 3.72
2469 2487 5.295292 CCATATGCACTCGTTCTTGATCTTT 59.705 40.000 0.00 0.00 0.00 2.52
2947 2965 2.561209 ACCTTTTTCCCACCCTTGTT 57.439 45.000 0.00 0.00 0.00 2.83
2953 2971 2.286365 TTCCCACCCTTGTTGATGAC 57.714 50.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.551388 CATAGCGAGGGATCTAACTGTTC 58.449 47.826 0.00 0.00 0.00 3.18
5 6 2.894126 CCATAGCGAGGGATCTAACTGT 59.106 50.000 0.00 0.00 0.00 3.55
6 7 2.894126 ACCATAGCGAGGGATCTAACTG 59.106 50.000 3.97 0.00 0.00 3.16
8 9 5.185249 TCATTACCATAGCGAGGGATCTAAC 59.815 44.000 3.97 0.00 0.00 2.34
10 11 4.930696 TCATTACCATAGCGAGGGATCTA 58.069 43.478 3.97 0.00 0.00 1.98
11 12 3.766591 CTCATTACCATAGCGAGGGATCT 59.233 47.826 3.97 0.00 0.00 2.75
12 13 3.677424 GCTCATTACCATAGCGAGGGATC 60.677 52.174 3.97 0.00 0.00 3.36
21 22 7.220030 ACTTCCAACTATGCTCATTACCATAG 58.780 38.462 6.20 6.20 44.01 2.23
22 23 7.136822 ACTTCCAACTATGCTCATTACCATA 57.863 36.000 0.00 0.00 0.00 2.74
24 25 5.435686 ACTTCCAACTATGCTCATTACCA 57.564 39.130 0.00 0.00 0.00 3.25
29 30 4.716784 TCTGGTACTTCCAACTATGCTCAT 59.283 41.667 0.00 0.00 46.59 2.90
30 31 4.093743 TCTGGTACTTCCAACTATGCTCA 58.906 43.478 0.00 0.00 46.59 4.26
31 32 4.442192 CCTCTGGTACTTCCAACTATGCTC 60.442 50.000 0.00 0.00 46.59 4.26
35 36 3.013648 TCCCCTCTGGTACTTCCAACTAT 59.986 47.826 0.00 0.00 46.59 2.12
39 40 1.151413 ACTCCCCTCTGGTACTTCCAA 59.849 52.381 0.00 0.00 46.59 3.53
44 45 0.971447 GCGAACTCCCCTCTGGTACT 60.971 60.000 0.00 0.00 34.77 2.73
49 50 2.125912 CGTGCGAACTCCCCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
55 56 2.453379 TAAACCCCCGTGCGAACTCC 62.453 60.000 0.00 0.00 0.00 3.85
58 59 2.683859 GCTAAACCCCCGTGCGAAC 61.684 63.158 0.00 0.00 0.00 3.95
65 66 1.378119 GAACCTGGCTAAACCCCCG 60.378 63.158 0.00 0.00 37.83 5.73
71 72 1.140134 AGGGCCTGAACCTGGCTAAA 61.140 55.000 4.50 0.00 45.73 1.85
72 73 1.541368 AGGGCCTGAACCTGGCTAA 60.541 57.895 4.50 0.00 45.73 3.09
74 75 3.334054 GAGGGCCTGAACCTGGCT 61.334 66.667 12.95 0.00 45.73 4.75
75 76 4.785453 CGAGGGCCTGAACCTGGC 62.785 72.222 12.95 6.34 45.73 4.85
78 79 2.203788 TCACGAGGGCCTGAACCT 60.204 61.111 12.95 0.00 42.18 3.50
80 81 2.432628 CGTCACGAGGGCCTGAAC 60.433 66.667 12.95 2.11 0.00 3.18
81 82 2.599281 TCGTCACGAGGGCCTGAA 60.599 61.111 12.95 0.00 0.00 3.02
92 94 1.479323 TGTAGGGCATTACCTCGTCAC 59.521 52.381 0.00 0.00 42.09 3.67
95 97 1.692519 GGATGTAGGGCATTACCTCGT 59.307 52.381 0.00 0.00 42.09 4.18
96 98 1.971357 AGGATGTAGGGCATTACCTCG 59.029 52.381 0.00 0.00 42.09 4.63
102 104 2.025037 TCAAAGCAGGATGTAGGGCATT 60.025 45.455 0.00 0.00 38.06 3.56
105 107 2.355010 ATCAAAGCAGGATGTAGGGC 57.645 50.000 0.00 0.00 39.31 5.19
112 114 9.991906 CCATATCAATAAAAATCAAAGCAGGAT 57.008 29.630 0.00 0.00 0.00 3.24
117 119 7.927629 TGCTCCCATATCAATAAAAATCAAAGC 59.072 33.333 0.00 0.00 0.00 3.51
192 194 6.046290 TGGCATCTATTCCATGAGATACAG 57.954 41.667 0.00 0.00 31.09 2.74
213 215 4.141779 GGCGAGGTTAGGGGTATATTATGG 60.142 50.000 0.00 0.00 0.00 2.74
219 221 2.781403 AAGGCGAGGTTAGGGGTATA 57.219 50.000 0.00 0.00 0.00 1.47
353 356 1.448013 GGCAACTCGACTACAGGGC 60.448 63.158 0.00 0.00 0.00 5.19
354 357 1.153823 CGGCAACTCGACTACAGGG 60.154 63.158 0.00 0.00 0.00 4.45
405 409 4.821589 GTCGGCCAGGAAGCTCGG 62.822 72.222 2.24 0.00 0.00 4.63
467 473 1.000163 GACGCAAGACTCCAGACTTCA 60.000 52.381 0.00 0.00 43.62 3.02
469 475 1.333177 AGACGCAAGACTCCAGACTT 58.667 50.000 0.00 0.00 38.08 3.01
473 479 2.064762 CTCAAAGACGCAAGACTCCAG 58.935 52.381 0.00 0.00 42.76 3.86
485 491 4.550422 GCTTGGGTTTCATTCTCAAAGAC 58.450 43.478 0.00 0.00 0.00 3.01
539 545 1.583495 GAAGCCGGTACCAAAGGTGC 61.583 60.000 13.54 0.07 36.19 5.01
540 546 0.250553 TGAAGCCGGTACCAAAGGTG 60.251 55.000 13.54 0.00 36.19 4.00
542 548 0.323629 TCTGAAGCCGGTACCAAAGG 59.676 55.000 13.54 6.32 0.00 3.11
544 550 2.304761 AGATTCTGAAGCCGGTACCAAA 59.695 45.455 13.54 0.00 0.00 3.28
547 553 2.678336 CAAAGATTCTGAAGCCGGTACC 59.322 50.000 1.90 0.16 0.00 3.34
549 555 2.355716 CCCAAAGATTCTGAAGCCGGTA 60.356 50.000 1.90 0.00 0.00 4.02
569 576 1.287041 GGCCGTACACTTGACGAACC 61.287 60.000 0.00 0.00 42.98 3.62
581 588 1.254954 CATACCCCTAGAGGCCGTAC 58.745 60.000 0.00 0.00 0.00 3.67
602 609 2.423538 CGAAAGATTTGTAGCCTTGGGG 59.576 50.000 0.00 0.00 0.00 4.96
603 610 3.343617 TCGAAAGATTTGTAGCCTTGGG 58.656 45.455 0.00 0.00 33.31 4.12
618 625 0.857935 GCGCATCCTGAGATCGAAAG 59.142 55.000 0.30 0.00 0.00 2.62
619 626 0.175531 TGCGCATCCTGAGATCGAAA 59.824 50.000 5.66 0.00 0.00 3.46
620 627 0.249197 CTGCGCATCCTGAGATCGAA 60.249 55.000 12.24 0.00 0.00 3.71
621 628 1.103398 TCTGCGCATCCTGAGATCGA 61.103 55.000 12.24 0.00 0.00 3.59
622 629 0.038435 ATCTGCGCATCCTGAGATCG 60.038 55.000 12.24 0.00 0.00 3.69
637 644 1.656095 GAACACGAAGCTCCGAATCTG 59.344 52.381 0.00 0.00 0.00 2.90
644 651 3.851098 ACTATGAAGAACACGAAGCTCC 58.149 45.455 0.00 0.00 0.00 4.70
648 655 4.099120 CGAGGACTATGAAGAACACGAAG 58.901 47.826 0.00 0.00 0.00 3.79
671 678 1.738099 CAACGTGAAGCCTCGGAGG 60.738 63.158 19.95 19.95 38.80 4.30
674 681 2.954753 GCACAACGTGAAGCCTCGG 61.955 63.158 0.00 0.00 35.23 4.63
678 685 0.593128 AAGATGCACAACGTGAAGCC 59.407 50.000 0.00 0.00 35.23 4.35
688 695 1.089112 CGAAGCCATGAAGATGCACA 58.911 50.000 0.00 0.00 0.00 4.57
689 696 1.089920 ACGAAGCCATGAAGATGCAC 58.910 50.000 0.00 0.00 0.00 4.57
705 712 2.664851 CAAAGACGCAGGCCACGA 60.665 61.111 23.14 0.00 0.00 4.35
729 736 3.711842 CCGAAAACGCAGCTCGCA 61.712 61.111 8.52 0.00 42.60 5.10
816 823 5.144359 CGACTCTTTTTATTGTCGGTTTGG 58.856 41.667 6.49 0.00 45.54 3.28
882 889 1.880796 GGCGTGTTTGGTTTGCACC 60.881 57.895 0.00 0.00 44.56 5.01
883 890 1.880796 GGGCGTGTTTGGTTTGCAC 60.881 57.895 0.00 0.00 0.00 4.57
884 891 1.680522 ATGGGCGTGTTTGGTTTGCA 61.681 50.000 0.00 0.00 0.00 4.08
886 893 1.202463 TCAATGGGCGTGTTTGGTTTG 60.202 47.619 0.00 0.00 0.00 2.93
887 894 1.115467 TCAATGGGCGTGTTTGGTTT 58.885 45.000 0.00 0.00 0.00 3.27
923 931 3.861276 TTTCGAGGTCTGCGATTCTTA 57.139 42.857 0.00 0.00 37.64 2.10
953 961 0.179048 TCGATTAGCCCGACGACCTA 60.179 55.000 0.00 0.00 0.00 3.08
1107 1121 1.834822 GTCCCCATCTCCTCCTCCG 60.835 68.421 0.00 0.00 0.00 4.63
1842 1856 0.889186 GCTTGTCCTTGCGGGAGAAA 60.889 55.000 8.89 2.82 45.07 2.52
2296 2311 5.123227 GCATGCCATACAAGAACTAGGTAA 58.877 41.667 6.36 0.00 0.00 2.85
2443 2461 3.521560 TCAAGAACGAGTGCATATGGAC 58.478 45.455 18.81 18.81 36.57 4.02
2444 2462 3.885724 TCAAGAACGAGTGCATATGGA 57.114 42.857 4.56 0.00 0.00 3.41
2589 2607 2.391616 TGCAGCTAATCTCACCACAG 57.608 50.000 0.00 0.00 0.00 3.66
2846 2864 2.235402 CCATGTTTACCGGACTAGTGGT 59.765 50.000 9.46 4.95 42.34 4.16
2947 2965 2.027073 GACAGCGCAACCGTCATCA 61.027 57.895 11.47 0.00 36.67 3.07
3088 3106 1.442769 CCCTCACATCCAACTGAACG 58.557 55.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.