>input_sequence_60420
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-----------------------------------------------ATGGACTCCACCACCAACCAATTCGCCGG----
--CGCCGCCGCTGGCGCGTCATCGGCGAACACGGCACCGCTGCCGGCCATGCTCGCTGACGCCCTTATCGGCGCCGGAGC
CGGAGGAGGAGATGGGGACCCCAGCGCCGCTCTCCAACGGCTGGCGGCCCTCGGCGATCGCATGGCTGCTGTCCGGCGCC
TCCTCGTCGCCTCCATTTCTGGGGAATCGCAGCCCCTCTCCTCCTCGGATATTCAGTCCGTGTCCTCCGAGATCTCATCT
GCCGCTCACCTCGTCGTCCTCAACGCCGCCTCCCTCCTTTCTTCCTCCCTCCCTTTTCCCGCCCCATCTGCCACTCCTGC
CCCTCCCGCTCCTATCCAAGAGCTTCCCGCCGCGGCCTCCACCGCCGATGTGCTTCCCCAAGAAGCTACCAAGGGCTACG
ATGTCGTGGAGCTCGATGCCGACGAGCTGCTCGCGGAGCATGTCCACTTCTGCAATATCTGCGGCAAGGGCTTCCGCCGC
GACGCCAACCTCAGGATGCACATGCGCGCACACGGCGACCGATTCAAGACCCTGGACGCGCTCTCCCGGCCCGGTCAGGC
AAAGCCAGCTGATGGCCGCGATGTGCGCTTTTCCTGTCCTTTCACGGGGTGCAACCGGAACCGTGCGCACCGCCGCTTCC
GGCCGCTCAAGTCAGCGGTGTGCGCGCGCAACCACTTCCGCCGCAGCCACTGCCCCAAACTCTACGCGTGTGAGCGCTGC
GGTGGCAAGAAGCGTTTTGCTGTTCTTGCCGATCTCCGCGGCCACCTCCGCCACTGCGGTGAGGAGGCACAGTGGCGCTG
CTCCTGCGGCACCACTTTCTCCCGCAAGGACAAGCTGTTCGGCCATCTCGCCCTCTTTGAAGGCCATATGCCAGCCATGT
CCCCTCCGAACAAGGATGCAGTGACAACGACTACAGAGGCACCCCTTGATATAATGGATGAAGGAGGAATCGAAGAGCAG
GAAGATGGCGGTGAAGGTGGTTTTGATCCGGAGTTCTTCAAGGAGTGGATGGAGGAGCTCAAAGATGATGGCGTGCCTGC
TGGTGGCACAGTCTGGCCTGGACGGGCAGCAGCTGGGCAATAG-------------------------------------
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>chr6D_1_TraesCS6D01G188100
AGAGAACAGTTAGATCCCTCGCTATGGTAATGAGCATAGTTGGAAGTACCAGAGGGGAGTTCGCACGGGGGTTTAGCCAG
GTTCAG-GCCCTCGTGACGAGGTAATGCCCTACATCCTGCTTTGATTTTTATTGATATGGGAGCACCTCGTGCGAGGGGG
TTACAAGAGGATGATGATGGTGACTAGCGAGATCTGTATCTCATGGAATAGATGCCATAATATACCCCTAACCTCGCCTT
ATAAAGGGGACGT-GGGTTAGGGTTTACAAGTTTCCTAACCGATCTCATCCACGAGGGCTTCTCGGCTTGCATGCCAAGA
TGAACTTCTTGCTTCGAGTCGGCCCCTTGGACTGCGCCCTGTAGTCGAGTTGCCGCCAAGCCCCC-GGGCCCTGACGCTG
ACCCAATACCGAGCTTCCTGGCCGACGGGCCA-CCCCGGTATATTGTACCGTCAGTAGCCCT-GAGCTTGTCTGAAGTCT
GGAGTCTTGCGTCTTTGAGAATGAAACCCAAGCGGGCTCCTTTTGTATCGGTGGTAGGCGACGTGCACCTTTGGTA-CCG
GCTTCAGAATCTTTGGGTTCGTCAAGTGTACGGCCTCTAGGGGTATGGCCCCAAGGCTACAAATCTTTCGATCTCAGGAT
GCGCAGATTCGGAGCTTCGTGTTCTTCATAGTCCTCGCCTCCGAGGCTTCACGTTGTGCATCTTCATGGCTTCGTGGCCT
GCGTCTTTGCGGCTTTGCGAGCTGCGTTTTCGGATGAAGTCCCAAGCTATGTTTAAATAAAATCGAAAGTTATCAAACTG
TGAAAAAAAAAGTCAAAAGTTACCAAACCGACAATAAAAAGAGTCGAAAGTTATCAGAAGAAAATGCACGAAGCAAAAGA
AAAAAAAAGGTGCA-AACCAAACACGCCCATTGAATGGACCTGTACGCAATAAGAATCGCAGACCTCGAAATCATCTAGC
TAGGTCGTCGGGCTAATCGAAGTTGGGCACCACCGTTTATTCACTGAATGGACTCCACCACCAACCAATTCGCCGG----
--CGCCGCCGCTGGCGCGTCATCGGCGAACACGGCACCGCTGCCGGCCATGCTCGCTGACGCCCTTATCGGCGCCGGAGC
CGGAGGAGGAGATGGGGACCCCAGCGCCGCTCTCCAACGGCTGGCGGCCCTCGGCGATCGCATGGCTGCTGTCCGGCGCC
TCCTCGTCGCCTCCATTTCTGGGGAATCGCAGCCCCTCTCCTCCTCGGATATTCAGTCCGTGTCCTCCGAGATCTCATCT
GCCGCTCACCTCGTCGTCCTCAACGCCGCCTCCCTCCTTTCTTCCTCCCTCCCTTTTCCCGCCCCATCTGCCACTCCTGC
CCCTCCCGCTCCTATCCAAGAGCTTCCCGCCGCGGCCTCCACCGCCGATGTGCTTCCCCAAGAAGCTACCAAGGGCTACG
ATGTCGTGGAGCTCGATGCCGACGAGCTGCTCGCGGAGCATGTCCACTTCTGCAATATCTGCGGCAAGGGCTTCCGCCGC
GACGCCAACCTCAGGATGCACATGCGCGCACACGGCGACCGATTCAAGACCCTGGACGCGCTCTCCCGGCCCGGTCAGGC
AAAGCCAGCTGATGGCCGCGATGTGCGCTTTTCCTGTCCTTTCACGGGGTGCAACCGGAACCGTGCGCACCGCCGCTTCC
GGCCGCTCAAGTCAGCGGTGTGCGCGCGCAACCACTTCCGCCGCAGCCACTGCCCCAAACTCTACGCGTGTGAGCGCTGC
GGTGGCAAGAAGCGTTTTGCTGTTCTTGCCGATCTCCGCGGCCACCTCCGCCACTGCGGTGAGGAGGCACAGTGGCGCTG
CTCCTGCGGCACCACTTTCTCCCGCAAGGACAAGCTGTTCGGCCATCTCGCCCTCTTTGAAGGCCATATGCCAGCCATGT
CCCCTCCGAACAAGGATGCAGTGACAACGACTACAGAGGCACCCCTTGATATAATGGATGAAGGAGGAATCGAAGAGCAG
GAAGATGGCGGTGAAGGTGGTTTTGATCCGGAGTTCTTCAAGGAGTGGATGGAGGAGCTCAAAGATGATGGCGTGCCTGC
TGGTGGCACAGTCTGGCCTGGACGGGCAGCAGCTGGGCAATAGCCTGTGTTGCAAGTTCTGTTTGGGGTAAGAGCTTTAT
CTTCCTGCCTT-TTTTTGGGGGGTACAATTGAAACTTATAGTATCTGAAATGAACTGGTGCAAGAAGATATAAATATGGT
AATATGTCCTTCAGGTTAACAATTACGCCAACAATATAAGCATAGACTTGATTTTTGTGGTTGAACTCAATTACCTAGTT
CTTGTATGGCATGCAATTTTAGTATTACTAATGTGCAATTTCAGGTGACTTGAGATTTAAG-AAAAAATCAGGCAACTGA
CAGTTAGAAAAGTTATTTTATTTGGGGTGAGTTTAGGGGAAGTATAATATGAGTCT--GTGTCCATATGCACTCGTTCTT
GATCTTTGAAACTATACATTTTTTAAATTTTCTCAAAATATTCATGTTACCACAAAGTATTAACTTATATCCATGTACAA
ATTTTTGAGAAAAATATGATTACAGTTGTGCTGTGTAAATAGTAAACTGTGGTGAGATTAGCTGCATATCAGGATCCTGG
TTCACCACACCAAATTATACGAGCACTTTGATTGCAAGGGGAAAAATTGTGCTTTTTAGTTGGCTAATTCCTCTGGTTTT
CTGTTGTACCAAGTTTGTCTTGAAATACTTTATTGGATTATTTGCTCTGGTTGTTATTGACTTCTTGTATGCCCTGGATC
ACATATTACTATTAGTACTAGCAAACATGCATGTGCGTTGCAACGGAGAAAAAAGTATCACACACCACTAGTCCGGTAAA
CATGGCTAATGACCTCCATAGACCCATGTCCTCTATAGACGGGTTTGCACCTGTGTCACCGCTTAACCTTTTTCCCACCC
TTGTTGATGACGGTTGCGCTGTCCCAGGATCACAATATGTCCGAACATGGTCAATCCTAAGGCAGTGAGCTCGGCCACCG
CACAACACACCTGTCATTGAACCGAACCTGTGCAAGGTAATGGCTAAAAACTTTAAAAATAATCTCGTTCAGTTGGATGT
GAGGGCC
>chr3B_3
AGAAAGTTT----ATCCCTCGGAAGGGTACCAAGCGTAGCTGGATGTACTAGAGGAGATTTCGCAAGGGGGCATTACCCG
TGTCCGAGCCCTCATGGTGAGGTCATTCCCTGCGTCCTACTTTGCGTTTTATTGATATGGGAGCACCTCGTGCGACAAGG
TTATAAGAGGTTGGTGATAATGAATACGGAGAGTTGTGTCTAATGGAATAGCTGGATGTGAGCTAGCCTGGCCTCACCTT
ATAAAAAGGGCCAAGAGCTTGGTTTTAAAGGGCTCCTAACTGACCTCATGTGTGAGGGCTTCTTGGCTTGCATGCCAGGA
TGAAGTTCTTGCTTCGAGCCAAACCCCTGGATTGCATCCTGGAGTCGCTTTGCTGCCAGGCACGTTGGGCCATAAGGTTC
ACTCAATAGTGAGCTTCCCGGATGATGAGCCACCCCCGATATATTGTACCGTTAGTAGCCCTTGAGTGTGTTCACAGTTT
CGAGTCTCACATCTTCGGGAACAAAACCCAGCTGGGCTGCTTTTGTATCAGCGACTGGCGCACTTTGACC----------
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--------------------------------------------------------------------TCCGGTTCCTGC
TTCAGGAATC----------------------------------------------------------------------
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>chr6A_94
TGACAGTAATACCCTCATCCTGCT--------------------------------------------------------
----------------------------------------TTTGATTTTTATTGATATGGAAGCACCTCGTGCGAGGGGG
TTACAAGAGGATGATGATGGTGACTAACGAGATTTGTATCTCATAGAATAGATGTCATAAGATACCCCTAACCTCGCCTT
ATAAAGGGGACGT-GGGTTAGGGTTTACAGGTTTCCTAACCGATCTAG-------GGGCTTCTCGGCTTGCATGGCAAGA
TGAACTTCTTGCTTTGTGTTGGCCACTTGGACTGCCTCCTGTAGTCAAGTTGCCACCAAGCCCCTTGGGCCCTGACGCTG
GCCCAATATCGGGCTTCCTGGCTGACGGGCTA-TCCCGGTGTATTGTATCGTCAGTAGCCTC-GAGCTTATCCGGAGTTT
GGAATCTTGCATCTTTGGGAATGAAACCCAAGCAGGCTCCTTTCATATCGGTGACAGGCGACGCATAATCTTTGGACCCG
GCTTCAGAATCTTTGAGTTCGTCAAGTATACGGCCTCTAGTCGTATGGT--------------------GATCTCAGGAT
GCGTAGATTCAGAGGTTCGTGTTCTTCATGGTTCTCGTCTTCGAAGCTTCACGTCCTGCATCTTCATGGCTGCGCCGCCT
GCGTCTTTGCGGCTTCGCGAGCTGCATCTTCGGATAAAGTCTCAAGCTATGTTTAAATAAAGTCGAAAGTTATCAAATTG
TGGGGAAAAAAATCAAAAGTTATCAAACTGACAATAAAAAGAGTCGAAAGTTCTCAGAAGAAAATGCACGAAGCAAAAGT
AAAAAAAAAAGGTGCAACCAAACACGCCCATTGAATGGACCTGTGCGCAAGAAGAATCGCAGACCTCGAAATCATCTAGC
GAGGTCGTCGGGCTAAGCGAAGTTGGGCACCACCG--TATTCACTGAATGGACTCCACCACCAACCAATTCGCCGA----
--CGCCGCCGCTGGCGCGTCATCGGCGAACACGGCACCGCTGCCGGCCATGCTCGCTGACGCCCTTATCGGCGCCGGAGC
TGGAGGAGGAGATGGGGAACCCAGCGCCGCTCTCCAACGGCTTGCAGCCCTCGGCGATCGCATGGCTGCTGTCCGGCGCC
TCCTCGTCGCCTCCATTTCTGGGGAATCGCAGCCCCTCTCCTCCTCGGATATTCAGTCCGTGTCCTCCGAGATCTCATCT
GCCGCTCACCTCGTCGTCCTCAACGCCGCCTCCCTCCTTTCTTCCTCCCTCCCTTTTCCCGCCCCATCCGCCCCTCCTGC
CCCTCCCGCTCCTATCCAAGAGCTTCCCGCCGCGGCCTCCACCGCCGATGTGCTTCCCCAAGAAGCCACCAAGGGCTACG
ATGTCGTGGAGCTCGATGCCGACGAACTGCTCGCGGAGCATGTCCACTTCTGCAATATATGCGGCAAGGGCTTCCGCCGC
GACGCCAACCTTAGGATGCACATGCGTGCGCACGGCGACCGATTCAAGACCCTGGACGCGCTCTCCCGGCCCGGTCAGGC
AAAGCCAGCTGATGGCCGCGATGTGCGCTTTTCCTGTCCTTTCACGGGGTGCAACCGGAACCGTGCGCACCGCCGCTTCC
GGCCGCTCAAGTCAGCGGTGTGCGCGCGCAACCACTTCCGCCGCAGCCACTGCCCTAAACTCTACGCGTGCGAGCGCTGC
GGTGGCAAGAAGCGTTTTGCTGTTCTTGCCGATCTCCGCGGCCACCTCCGCCACTGCGGTGAGGAGGCACAGTGGCGCTG
CTCCTGCGGCACCACCTTCTCCCGCAAGGACAAGCTGTTCGGCCATCTCGCCCTCTTTGAAGGCCATATGCCAGCCATGT
CCCCTCCGAACAAGGATGCAGTGACAACGACTACAGAGGCACCCCTTGATATAATGGATGAAGGAGGAATCGAAGAGCAG
GAAGATGGCGGTGAAGGAGGTTTTGATCCGGAGTTCTTCAAGGAGTGGATGGAGGAGCTCAAAGATGATGGCGTACCTGC
TGGTGGCACAATCTGGCCTGGACGGGCAGCAGCTGGGCAATAGCCTGTGTTGCAAGTTCTGTTTGGGGTAAGAGCTTTAT
CTTCCTGCCTT-TTTTTGG--GGTACAATTGAAACTTATAGTATTTGAAATAAACTGGTGCAAGAAGATATAAATATGGT
AATATGTCCTTCAGGTTAACAATTACGCCAACAATATAAGCATAGACTTGATTTTTGTGGTTGAACTCAAGTACCTAGTT
CTTGTATGGCATGCAATTTTAGTATTACTAATGTGCAATTTCAGGTGACTTGAGATTTAAGAAAAAAATCAGGCAACTGA
CAGTTAGAAAAGTTATTTTATTTGGGGTGAGTTTAGGGGAAGTATAATATGAGTCT--GT--CCATATGCACTCGTTCTT
GATCTTCGAAATTATACATTTTTTAAATTTTCTCAAAATATTAATGTTACCACAAAGTATTAACTTATATCCATGTACAA
AATTTTGAGAAAAATATGATAAAAGTTGTGCTGTGTAAATAGTAAAATGTGGTGAGATTAGCTGCATATCAGGATCCTGG
TTCACCACACCAAATTATACGAACACTTTGATTGCAAGGGGAAAAATTGTGCTTTTTAGTTGGCTAATTCCTCTGGTTTT
CTGTTGTACCAAGTTTGTCTTGAAATACTTTATTGGATTATTTGCTCTGGTTGTTATTGACTTCTTGTATGCCCTGGATC
ACATATTACTATTAGTACTAGCAAACATGCCCGTGCGTTGCAACGGAGAAAAAAGTATCACACGCCACTAGTCTGGTAAA
CATGGCTAATGACCTCCATAGACCCATGTCCTCTATAGACGGGATTGCACCTGTGTCACCGCTTAACCTTTTTTCCACCC
TTGTCGATGATGGTTGCGCTGTCCCAGGATCACAATATGTCCGAACATGGTCAATCCTAAGGCAGTGAGCTCGGCCACCG
CACAACACACCTGTCATTGAACCGAACCTGTGCAAGGTAATGGCTAAAAACTTTAAAAATAATCTTGTTCAGTTGGACGT
GAGGGCC
>chr6B_786
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-----------------------------------------------------------------------ATCAAACTG
TGAAAAAAAAAGTCAAAAGTTATCAAACTGACAATAAAAAGAGTCAAAAGTTATCGGAAGAAAATGCAGGAAGCAAAA--
--AAAAAAAAGGTGCAACCAAACACTCCCATTGAATGGGCCTGTAAGCAAGAAGAATCGCAGACCTCGAAATCATCTAGC
GAGGTCGTCGGGCTAATCGAAGTTGGGCACCACCGTTTATTCACTGAATGGACTCGACCACCAACCAATTCGCCGGCGCC
GCCGCCGCCGCTGGCGCGTCATCGGCGAACACGGCACCGCTGCCGGCCATGCTCGCTGACGCCCTTATCGGCGCCGGAGC
TGGAGGAGGAGATGGGGACCCCAGCGCCGCTCTCCAACGGCTGGCGGCCCTCGGCGATCGCATGGCTGCTGTCCGGCGCC
TCCTCGTCGCCTCCATTTCTGGGGAATCGCAGCCCCTCTCCTCCTCGGATATTCAGTCCGTGTCCTCCGAGATCTCATCT
GCCGCTCACCTCGTCGTCCTCAACGCCGCCTCCCTCCTTTCTTCGTCCCTCCCTTTTCCCGCCCCATCTGCCACTCCCGC
CCCTCCCGCTCCTATACAAGAGCTTCCCGCAGCGGCCTCCACCGCCGATGTGCTTCCCCAAGAAGCTACCAAGGGCTACG
ATGTCGTGGAGCTCGATGCCGACGAGCTGCTCGCGGAGCATGCCCACTTCTGCAATATCTGCGGCAAGGGCTTCCGCCGC
GACGCCAACCTCAGGATGCACATGCGCGCGCACGGCGACCGATTCAAGACCCTGGACGCGCTCTCCCGGCCCGGTCAGGC
AAAGCCAGTTGATGGCCGCGATGTGCGCTTTTCCTGTCCTTTCACGGGGTGCAACCGGAACCGTGCGCACCACCGCTTCC
GGCCGCTCAAGTCAGCGGTGTGCGCGCGCAACCACTTCCGCCGCAGCCACTGCCCCAAACTCTACGCGTGTGAGCGCTGC
GGTGGCAAGAAGCGTTTTGCTGTTCTTGCCGATCTCCGCGGCCACCTCCGCCACTGCGGTGAGGAGGCACAGTGGCGCTG
CTCCTGCGGCACCACCTTCTCCCGCAAGGACAAGCTGTTCGGCCATCTCGCCCTCTTTGAAGGCCATATGCCAGCCATGT
CCCCTCCGAACAAGGATGCAGTGACAACGACTACAGAGGCACCCCTTGATATAATGGATGAAGGAGGAATCGAAGAGCAG
GAAGATGGCGGTGAAGGTGGTTTTGATCCGGAGTTCTTCAAGGAGTGGATGGAGGAGCTCAAAGATGATGGCGTGCCTGC
TGGTGGCACAGTCTGGCCTGGACGGGCAGCAGCTGGGCAATAGCCTGTGTTGCAAGTTCTGTTTGGGGTAAGAGCTTTAT
CTTCCTGCCTTTTTTTTGG--GGTACAATTGAAACTTATAGTATCTGAAATAAACTGGTGCAAGAAGAAATAAATATGGT
AATATGTCCTTCAGGTTAACAATTACGCCAACAATATAAGCATAGACTTGATTTTTGTGGTTGAACTCAAGTACCTAGTT
TTTGTATGGCATGCAATTTTAGTATTACTAATGTGCAATTTCAGGTGACTTGAGATTTAAGAAAAAAATCAGGCAACTGA
CAGTTAGAAAAGTTA-TTTATTTGGGGTGAGTTTAGGGGAAGTATAATATTAGTCTGTGT--CCATATGCACTCGTTCTT
GATCTCCGAAACTATACATTTTTTAAATTTTCTCAACATATTCATGTTTCCACAAAGTATTAACTTATATCCATGTACAA
AATTTTGAGAAAAAAATGATTATAGTTGTGCTGTGTAAATAGTAAAATGTGGTGAGATTAGCTGCATATCAGGATCCTGG
TTCACCACACCAAATTATACGAGCACTTTGATTGCAAGGGGAAAAATTGTGCTTTTTAGTTGGCTAATTCCTCTGGTTTT
CTGTTGTACCAAGTTTGTCTTGAAATACTTTATTGGATTATTTGCTCTGGTTGTTATTGACTTCTTGTATGCCCTGGATC
ACATATTACTATTAGTACTAGCAAATATGCCCGTGCGTTGCAACGGAGAAAAGAGTATCACATGCCACTAGTCCGGTAAA
CATGGCTAATGACCTCCATAGACCCATGTCCTCTATAGACGGGTTTGCACCTGTGTCACCGCTTAACCTTTTTCCCACCC
TTGTCGATGATGGTTGCGCTGTCCCAGGATCACAATATGTCCGAACATGGTCAATCCTAAGGCAGTGAGCTCGGCCACCG
CACAACACACCTGTCATTGAACCGAACCTGTGCAAGGTAATGGCTAAAAACTTTAAAAATAATCTTGTTCAGTTGGACGT
GAGGGCC
>SNPs
---S-SS-S-SSS--------SS-S----SSS---S---S----S----S-----S--S------S-----SS-SS--S-
SS--S--------S--SS-----S--S----S-S----S-----------------------------------------
--------------------------S------S--------------------S-----S-------------------
-----------------------------S-------------------SSSS---------------------------
-----------------------------------SS---------------------------S---------------
--------S-------------S-------------------------------------------------S-S---S-
----------S------S-----------------------------------SS---------SS-S-S--S-S-----
---------------S-----------S------------SS------SSSSSSSSSSSSSSSSSSSSS-----------
---S------S---S--------------S--S----S--S---S---------SS---------------S--SS----
---------------S---------S-S-------S-----S-------------------S------------------
----------------------S-----S--------------------------------------------------S
--------SSS-SS------------------------------------S-----------------------------
S-------------------------------------------------------------------------------
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S-------------------------------------------------------------------------------
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-----------------------------S--------------------------------------------------
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---------------S----------------------------------------------------------------
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-------------------SS------------------------------S----------------------------
----------------------------------------------------------------------S---------
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------------------------------------------------------------SS------------------
------S-------------------------------------------------------------------------
-S--------------------S-----------------------S---------------------------------
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------------------------------SS-------------------------------S----------------
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----S-----S---------------------------------------------------------------------
-----------------------------------------------------------------S-----------S--
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>forward_651
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-----------------------------------------------------------------------TCTCAGGAT
GCGCAGATTCG---------------------------------------------------------------------
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>reverse_1856
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---------------TTTCTCCCGCAAGGACAAGC---------------------------------------------
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>forward_756
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-----------------CGAGCTGCGTTTTCGGATG--------------------------------------------
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>reverse_2607
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----------------------------------------------CTGTGGTGAGATTAGCTGCA--------------
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