Multiple sequence alignment - TraesCS6D01G143100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G143100 chr6D 100.000 2660 0 0 1 2660 113901809 113904468 0.000000e+00 4913
1 TraesCS6D01G143100 chr6A 91.822 2091 100 27 291 2361 141850806 141852845 0.000000e+00 2848
2 TraesCS6D01G143100 chr6B 91.264 2072 124 30 301 2361 203296860 203298885 0.000000e+00 2771
3 TraesCS6D01G143100 chr7D 94.314 299 14 1 2362 2660 465836226 465835931 3.120000e-124 455
4 TraesCS6D01G143100 chr7D 96.032 252 8 2 2358 2609 219288437 219288686 2.460000e-110 409
5 TraesCS6D01G143100 chr7D 90.429 303 12 4 2358 2660 214764739 214765024 1.490000e-102 383
6 TraesCS6D01G143100 chr2D 93.046 302 9 2 2359 2660 643052217 643052506 5.260000e-117 431
7 TraesCS6D01G143100 chr2D 93.046 302 9 3 2360 2660 648110770 648110480 5.260000e-117 431
8 TraesCS6D01G143100 chr2D 87.368 285 25 7 2362 2643 47287743 47288019 1.540000e-82 316
9 TraesCS6D01G143100 chr5D 92.308 299 11 2 2362 2660 367799727 367800013 5.300000e-112 414
10 TraesCS6D01G143100 chr1A 90.840 262 21 2 2361 2621 330088632 330088891 5.450000e-92 348
11 TraesCS6D01G143100 chr1A 88.550 262 27 2 2361 2621 481627828 481627569 5.530000e-82 315
12 TraesCS6D01G143100 chr3A 90.805 261 21 3 2362 2621 487474701 487474443 1.960000e-91 346
13 TraesCS6D01G143100 chr4D 84.821 112 11 6 1064 1174 508529713 508529607 1.010000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G143100 chr6D 113901809 113904468 2659 False 4913 4913 100.000 1 2660 1 chr6D.!!$F1 2659
1 TraesCS6D01G143100 chr6A 141850806 141852845 2039 False 2848 2848 91.822 291 2361 1 chr6A.!!$F1 2070
2 TraesCS6D01G143100 chr6B 203296860 203298885 2025 False 2771 2771 91.264 301 2361 1 chr6B.!!$F1 2060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.033991 GGAGAAGGGAAAAGGAGGCC 60.034 60.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 1723 0.035915 GCTCGCTTCCTTCCTTCCTT 60.036 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.945775 GTGTAAGTTCGGTAAGCTATCAC 57.054 43.478 0.00 0.00 0.00 3.06
23 24 5.404946 GTGTAAGTTCGGTAAGCTATCACA 58.595 41.667 0.00 0.00 0.00 3.58
24 25 5.515626 GTGTAAGTTCGGTAAGCTATCACAG 59.484 44.000 0.00 0.00 0.00 3.66
25 26 3.802948 AGTTCGGTAAGCTATCACAGG 57.197 47.619 0.00 0.00 0.00 4.00
26 27 2.431057 AGTTCGGTAAGCTATCACAGGG 59.569 50.000 0.00 0.00 0.00 4.45
27 28 1.410004 TCGGTAAGCTATCACAGGGG 58.590 55.000 0.00 0.00 0.00 4.79
28 29 1.120530 CGGTAAGCTATCACAGGGGT 58.879 55.000 0.00 0.00 0.00 4.95
29 30 1.202533 CGGTAAGCTATCACAGGGGTG 60.203 57.143 0.00 0.00 46.66 4.61
30 31 1.838077 GGTAAGCTATCACAGGGGTGT 59.162 52.381 0.00 0.00 45.45 4.16
31 32 3.036091 GGTAAGCTATCACAGGGGTGTA 58.964 50.000 0.00 0.00 45.45 2.90
32 33 3.453353 GGTAAGCTATCACAGGGGTGTAA 59.547 47.826 0.00 0.00 45.45 2.41
33 34 4.080751 GGTAAGCTATCACAGGGGTGTAAA 60.081 45.833 0.00 0.00 45.45 2.01
34 35 4.650972 AAGCTATCACAGGGGTGTAAAA 57.349 40.909 0.00 0.00 45.45 1.52
35 36 4.222124 AGCTATCACAGGGGTGTAAAAG 57.778 45.455 0.00 0.00 45.45 2.27
36 37 3.844211 AGCTATCACAGGGGTGTAAAAGA 59.156 43.478 0.00 0.00 45.45 2.52
37 38 4.080863 AGCTATCACAGGGGTGTAAAAGAG 60.081 45.833 0.00 0.00 45.45 2.85
38 39 4.323562 GCTATCACAGGGGTGTAAAAGAGT 60.324 45.833 0.00 0.00 45.45 3.24
39 40 5.105064 GCTATCACAGGGGTGTAAAAGAGTA 60.105 44.000 0.00 0.00 45.45 2.59
40 41 4.612264 TCACAGGGGTGTAAAAGAGTAC 57.388 45.455 0.00 0.00 45.45 2.73
41 42 3.968649 TCACAGGGGTGTAAAAGAGTACA 59.031 43.478 0.00 0.00 45.45 2.90
58 59 1.963679 CACATTTGGTGTTCCCGGG 59.036 57.895 16.85 16.85 42.75 5.73
59 60 1.228737 ACATTTGGTGTTCCCGGGG 60.229 57.895 23.50 6.77 38.01 5.73
60 61 2.283604 ATTTGGTGTTCCCGGGGC 60.284 61.111 23.50 14.99 35.15 5.80
61 62 3.153629 ATTTGGTGTTCCCGGGGCA 62.154 57.895 23.50 17.68 35.15 5.36
62 63 4.589675 TTGGTGTTCCCGGGGCAC 62.590 66.667 29.21 29.21 35.15 5.01
76 77 2.042639 GCACCAGGGCCATTGGAT 60.043 61.111 27.11 12.04 39.08 3.41
77 78 2.129785 GCACCAGGGCCATTGGATC 61.130 63.158 27.11 15.79 39.08 3.36
78 79 1.616921 CACCAGGGCCATTGGATCT 59.383 57.895 27.11 6.87 39.08 2.75
79 80 0.754217 CACCAGGGCCATTGGATCTG 60.754 60.000 27.11 13.19 39.08 2.90
80 81 1.831286 CCAGGGCCATTGGATCTGC 60.831 63.158 18.29 0.00 37.96 4.26
81 82 2.191513 CAGGGCCATTGGATCTGCG 61.192 63.158 6.18 0.00 0.00 5.18
82 83 2.192979 GGGCCATTGGATCTGCGA 59.807 61.111 6.95 0.00 0.00 5.10
83 84 1.228367 GGGCCATTGGATCTGCGAT 60.228 57.895 6.95 0.00 0.00 4.58
84 85 0.036732 GGGCCATTGGATCTGCGATA 59.963 55.000 6.95 0.00 0.00 2.92
85 86 1.160137 GGCCATTGGATCTGCGATAC 58.840 55.000 6.95 0.00 0.00 2.24
86 87 1.543208 GGCCATTGGATCTGCGATACA 60.543 52.381 6.95 0.10 0.00 2.29
87 88 2.221169 GCCATTGGATCTGCGATACAA 58.779 47.619 15.39 15.39 0.00 2.41
88 89 2.618241 GCCATTGGATCTGCGATACAAA 59.382 45.455 16.51 4.92 0.00 2.83
89 90 3.304257 GCCATTGGATCTGCGATACAAAG 60.304 47.826 16.51 13.14 0.00 2.77
90 91 3.251729 CCATTGGATCTGCGATACAAAGG 59.748 47.826 17.31 17.31 0.00 3.11
91 92 3.904800 TTGGATCTGCGATACAAAGGA 57.095 42.857 12.02 0.00 0.00 3.36
92 93 3.179443 TGGATCTGCGATACAAAGGAC 57.821 47.619 1.60 0.00 0.00 3.85
93 94 2.499693 TGGATCTGCGATACAAAGGACA 59.500 45.455 1.60 0.00 0.00 4.02
94 95 3.055458 TGGATCTGCGATACAAAGGACAA 60.055 43.478 1.60 0.00 0.00 3.18
95 96 4.130118 GGATCTGCGATACAAAGGACAAT 58.870 43.478 0.00 0.00 0.00 2.71
96 97 4.024556 GGATCTGCGATACAAAGGACAATG 60.025 45.833 0.00 0.00 0.00 2.82
97 98 3.937814 TCTGCGATACAAAGGACAATGT 58.062 40.909 0.00 0.00 0.00 2.71
98 99 3.932710 TCTGCGATACAAAGGACAATGTC 59.067 43.478 4.51 4.51 0.00 3.06
99 100 3.935203 CTGCGATACAAAGGACAATGTCT 59.065 43.478 13.53 0.00 32.47 3.41
100 101 5.079689 TGCGATACAAAGGACAATGTCTA 57.920 39.130 13.53 0.00 32.47 2.59
101 102 5.670485 TGCGATACAAAGGACAATGTCTAT 58.330 37.500 13.53 2.73 32.47 1.98
102 103 5.523552 TGCGATACAAAGGACAATGTCTATG 59.476 40.000 13.53 11.65 32.47 2.23
103 104 5.523916 GCGATACAAAGGACAATGTCTATGT 59.476 40.000 13.53 16.16 32.47 2.29
104 105 6.037172 GCGATACAAAGGACAATGTCTATGTT 59.963 38.462 13.53 7.07 32.47 2.71
105 106 7.621991 CGATACAAAGGACAATGTCTATGTTC 58.378 38.462 13.53 12.80 32.47 3.18
106 107 7.254455 CGATACAAAGGACAATGTCTATGTTCC 60.254 40.741 13.53 9.44 32.47 3.62
107 108 5.630121 ACAAAGGACAATGTCTATGTTCCA 58.370 37.500 13.53 0.00 32.47 3.53
108 109 5.473504 ACAAAGGACAATGTCTATGTTCCAC 59.526 40.000 13.53 0.00 32.47 4.02
109 110 4.908601 AGGACAATGTCTATGTTCCACA 57.091 40.909 13.53 0.00 32.47 4.17
110 111 5.241403 AGGACAATGTCTATGTTCCACAA 57.759 39.130 13.53 0.00 32.47 3.33
111 112 5.248640 AGGACAATGTCTATGTTCCACAAG 58.751 41.667 13.53 0.00 32.47 3.16
112 113 4.396166 GGACAATGTCTATGTTCCACAAGG 59.604 45.833 13.53 0.00 32.47 3.61
113 114 4.985538 ACAATGTCTATGTTCCACAAGGT 58.014 39.130 0.00 0.00 35.89 3.50
114 115 5.385198 ACAATGTCTATGTTCCACAAGGTT 58.615 37.500 0.00 0.00 35.89 3.50
115 116 6.539173 ACAATGTCTATGTTCCACAAGGTTA 58.461 36.000 0.00 0.00 35.89 2.85
116 117 6.655003 ACAATGTCTATGTTCCACAAGGTTAG 59.345 38.462 0.00 0.00 35.89 2.34
117 118 4.575885 TGTCTATGTTCCACAAGGTTAGC 58.424 43.478 0.00 0.00 35.89 3.09
118 119 4.041075 TGTCTATGTTCCACAAGGTTAGCA 59.959 41.667 0.00 0.00 35.89 3.49
119 120 4.392138 GTCTATGTTCCACAAGGTTAGCAC 59.608 45.833 0.00 0.00 35.89 4.40
120 121 2.719531 TGTTCCACAAGGTTAGCACA 57.280 45.000 0.00 0.00 35.89 4.57
121 122 3.006112 TGTTCCACAAGGTTAGCACAA 57.994 42.857 0.00 0.00 35.89 3.33
122 123 3.357203 TGTTCCACAAGGTTAGCACAAA 58.643 40.909 0.00 0.00 35.89 2.83
123 124 3.764434 TGTTCCACAAGGTTAGCACAAAA 59.236 39.130 0.00 0.00 35.89 2.44
124 125 4.109766 GTTCCACAAGGTTAGCACAAAAC 58.890 43.478 0.00 0.00 35.89 2.43
125 126 3.357203 TCCACAAGGTTAGCACAAAACA 58.643 40.909 0.00 0.00 35.89 2.83
126 127 3.129638 TCCACAAGGTTAGCACAAAACAC 59.870 43.478 0.00 0.00 35.89 3.32
127 128 3.443976 CACAAGGTTAGCACAAAACACC 58.556 45.455 0.00 0.00 0.00 4.16
128 129 2.429250 ACAAGGTTAGCACAAAACACCC 59.571 45.455 0.00 0.00 0.00 4.61
129 130 1.699730 AGGTTAGCACAAAACACCCC 58.300 50.000 0.00 0.00 0.00 4.95
130 131 1.063567 AGGTTAGCACAAAACACCCCA 60.064 47.619 0.00 0.00 0.00 4.96
131 132 1.967779 GGTTAGCACAAAACACCCCAT 59.032 47.619 0.00 0.00 0.00 4.00
132 133 2.288763 GGTTAGCACAAAACACCCCATG 60.289 50.000 0.00 0.00 0.00 3.66
133 134 2.625790 GTTAGCACAAAACACCCCATGA 59.374 45.455 0.00 0.00 0.00 3.07
134 135 1.331214 AGCACAAAACACCCCATGAG 58.669 50.000 0.00 0.00 0.00 2.90
135 136 1.039856 GCACAAAACACCCCATGAGT 58.960 50.000 0.00 0.00 0.00 3.41
136 137 1.000274 GCACAAAACACCCCATGAGTC 60.000 52.381 0.00 0.00 0.00 3.36
137 138 1.613437 CACAAAACACCCCATGAGTCC 59.387 52.381 0.00 0.00 0.00 3.85
138 139 1.256812 CAAAACACCCCATGAGTCCC 58.743 55.000 0.00 0.00 0.00 4.46
139 140 0.856982 AAAACACCCCATGAGTCCCA 59.143 50.000 0.00 0.00 0.00 4.37
140 141 0.112412 AAACACCCCATGAGTCCCAC 59.888 55.000 0.00 0.00 0.00 4.61
141 142 1.065410 AACACCCCATGAGTCCCACA 61.065 55.000 0.00 0.00 0.00 4.17
142 143 1.065410 ACACCCCATGAGTCCCACAA 61.065 55.000 0.00 0.00 0.00 3.33
143 144 0.332632 CACCCCATGAGTCCCACAAT 59.667 55.000 0.00 0.00 0.00 2.71
144 145 1.084018 ACCCCATGAGTCCCACAATT 58.916 50.000 0.00 0.00 0.00 2.32
145 146 1.272648 ACCCCATGAGTCCCACAATTG 60.273 52.381 3.24 3.24 0.00 2.32
146 147 0.819582 CCCATGAGTCCCACAATTGC 59.180 55.000 5.05 0.00 0.00 3.56
147 148 0.452987 CCATGAGTCCCACAATTGCG 59.547 55.000 5.05 0.00 0.00 4.85
148 149 0.179156 CATGAGTCCCACAATTGCGC 60.179 55.000 5.05 0.00 0.00 6.09
149 150 1.647545 ATGAGTCCCACAATTGCGCG 61.648 55.000 5.05 0.00 0.00 6.86
150 151 2.281484 AGTCCCACAATTGCGCGT 60.281 55.556 8.43 0.00 0.00 6.01
151 152 1.004320 AGTCCCACAATTGCGCGTA 60.004 52.632 8.43 0.00 0.00 4.42
152 153 0.392461 AGTCCCACAATTGCGCGTAT 60.392 50.000 8.43 0.00 0.00 3.06
153 154 0.248054 GTCCCACAATTGCGCGTATG 60.248 55.000 8.43 1.33 0.00 2.39
154 155 1.586042 CCCACAATTGCGCGTATGC 60.586 57.895 8.43 0.00 37.91 3.14
155 156 1.586042 CCACAATTGCGCGTATGCC 60.586 57.895 8.43 0.00 38.08 4.40
156 157 1.586042 CACAATTGCGCGTATGCCC 60.586 57.895 8.43 0.00 38.08 5.36
157 158 2.043405 ACAATTGCGCGTATGCCCA 61.043 52.632 8.43 0.00 38.08 5.36
158 159 1.298563 CAATTGCGCGTATGCCCAG 60.299 57.895 8.43 0.00 38.08 4.45
159 160 1.451207 AATTGCGCGTATGCCCAGA 60.451 52.632 8.43 0.00 38.08 3.86
160 161 1.439353 AATTGCGCGTATGCCCAGAG 61.439 55.000 8.43 0.00 38.08 3.35
162 163 4.899239 GCGCGTATGCCCAGAGCT 62.899 66.667 8.43 0.00 44.23 4.09
163 164 2.659897 CGCGTATGCCCAGAGCTC 60.660 66.667 5.27 5.27 44.23 4.09
164 165 2.280457 GCGTATGCCCAGAGCTCC 60.280 66.667 10.93 0.00 44.23 4.70
165 166 2.028190 CGTATGCCCAGAGCTCCG 59.972 66.667 10.93 0.00 44.23 4.63
166 167 2.490148 CGTATGCCCAGAGCTCCGA 61.490 63.158 10.93 0.00 44.23 4.55
167 168 1.068250 GTATGCCCAGAGCTCCGAC 59.932 63.158 10.93 0.00 44.23 4.79
168 169 2.134287 TATGCCCAGAGCTCCGACC 61.134 63.158 10.93 0.00 44.23 4.79
171 172 3.465403 CCCAGAGCTCCGACCCTG 61.465 72.222 10.93 0.17 0.00 4.45
172 173 2.363018 CCAGAGCTCCGACCCTGA 60.363 66.667 10.93 0.00 0.00 3.86
173 174 2.716017 CCAGAGCTCCGACCCTGAC 61.716 68.421 10.93 0.00 0.00 3.51
174 175 2.363147 AGAGCTCCGACCCTGACC 60.363 66.667 10.93 0.00 0.00 4.02
175 176 3.827898 GAGCTCCGACCCTGACCG 61.828 72.222 0.87 0.00 0.00 4.79
176 177 4.361971 AGCTCCGACCCTGACCGA 62.362 66.667 0.00 0.00 0.00 4.69
177 178 3.148279 GCTCCGACCCTGACCGAT 61.148 66.667 0.00 0.00 0.00 4.18
178 179 2.808315 CTCCGACCCTGACCGATG 59.192 66.667 0.00 0.00 0.00 3.84
179 180 2.758327 TCCGACCCTGACCGATGG 60.758 66.667 0.00 0.00 0.00 3.51
180 181 2.758327 CCGACCCTGACCGATGGA 60.758 66.667 0.00 0.00 0.00 3.41
181 182 2.134287 CCGACCCTGACCGATGGAT 61.134 63.158 0.00 0.00 0.00 3.41
182 183 1.364171 CGACCCTGACCGATGGATC 59.636 63.158 0.00 0.00 0.00 3.36
183 184 1.391933 CGACCCTGACCGATGGATCA 61.392 60.000 0.00 0.00 0.00 2.92
184 185 0.105039 GACCCTGACCGATGGATCAC 59.895 60.000 0.00 0.00 0.00 3.06
185 186 0.617535 ACCCTGACCGATGGATCACA 60.618 55.000 0.00 0.00 0.00 3.58
186 187 0.179073 CCCTGACCGATGGATCACAC 60.179 60.000 0.00 0.00 0.00 3.82
187 188 0.536724 CCTGACCGATGGATCACACA 59.463 55.000 0.00 0.00 0.00 3.72
188 189 1.139654 CCTGACCGATGGATCACACAT 59.860 52.381 0.00 0.00 0.00 3.21
189 190 2.477825 CTGACCGATGGATCACACATC 58.522 52.381 0.00 0.00 40.95 3.06
190 191 1.138859 TGACCGATGGATCACACATCC 59.861 52.381 0.00 0.00 41.22 3.51
196 197 2.408271 TGGATCACACATCCAAGCTC 57.592 50.000 0.58 0.00 44.54 4.09
197 198 1.629861 TGGATCACACATCCAAGCTCA 59.370 47.619 0.58 0.00 44.54 4.26
198 199 2.286872 GGATCACACATCCAAGCTCAG 58.713 52.381 0.00 0.00 38.09 3.35
199 200 1.669779 GATCACACATCCAAGCTCAGC 59.330 52.381 0.00 0.00 0.00 4.26
200 201 0.671472 TCACACATCCAAGCTCAGCG 60.671 55.000 0.00 0.00 0.00 5.18
201 202 1.376424 ACACATCCAAGCTCAGCGG 60.376 57.895 0.00 0.00 0.00 5.52
202 203 2.437359 ACATCCAAGCTCAGCGGC 60.437 61.111 0.00 0.00 0.00 6.53
203 204 2.437180 CATCCAAGCTCAGCGGCA 60.437 61.111 1.45 0.00 34.17 5.69
204 205 2.437359 ATCCAAGCTCAGCGGCAC 60.437 61.111 1.45 0.00 34.17 5.01
205 206 3.258228 ATCCAAGCTCAGCGGCACA 62.258 57.895 1.45 0.00 34.17 4.57
206 207 2.547640 ATCCAAGCTCAGCGGCACAT 62.548 55.000 1.45 0.00 34.17 3.21
207 208 2.338015 CCAAGCTCAGCGGCACATT 61.338 57.895 1.45 0.00 34.17 2.71
208 209 1.154093 CAAGCTCAGCGGCACATTG 60.154 57.895 1.45 0.00 34.17 2.82
209 210 2.986306 AAGCTCAGCGGCACATTGC 61.986 57.895 1.45 0.00 44.08 3.56
219 220 1.503542 GCACATTGCACGGAGAAGG 59.496 57.895 0.00 0.00 44.26 3.46
220 221 0.955428 GCACATTGCACGGAGAAGGA 60.955 55.000 0.00 0.00 44.26 3.36
221 222 1.522668 CACATTGCACGGAGAAGGAA 58.477 50.000 0.00 0.00 0.00 3.36
222 223 1.879380 CACATTGCACGGAGAAGGAAA 59.121 47.619 0.00 0.00 0.00 3.13
223 224 2.293122 CACATTGCACGGAGAAGGAAAA 59.707 45.455 0.00 0.00 0.00 2.29
224 225 3.057315 CACATTGCACGGAGAAGGAAAAT 60.057 43.478 0.00 0.00 0.00 1.82
225 226 3.057315 ACATTGCACGGAGAAGGAAAATG 60.057 43.478 0.00 0.00 0.00 2.32
226 227 1.533625 TGCACGGAGAAGGAAAATGG 58.466 50.000 0.00 0.00 0.00 3.16
227 228 1.073125 TGCACGGAGAAGGAAAATGGA 59.927 47.619 0.00 0.00 0.00 3.41
228 229 1.740025 GCACGGAGAAGGAAAATGGAG 59.260 52.381 0.00 0.00 0.00 3.86
229 230 2.359900 CACGGAGAAGGAAAATGGAGG 58.640 52.381 0.00 0.00 0.00 4.30
230 231 2.027192 CACGGAGAAGGAAAATGGAGGA 60.027 50.000 0.00 0.00 0.00 3.71
231 232 2.642807 ACGGAGAAGGAAAATGGAGGAA 59.357 45.455 0.00 0.00 0.00 3.36
232 233 3.274288 CGGAGAAGGAAAATGGAGGAAG 58.726 50.000 0.00 0.00 0.00 3.46
233 234 3.020274 GGAGAAGGAAAATGGAGGAAGC 58.980 50.000 0.00 0.00 0.00 3.86
234 235 3.562176 GGAGAAGGAAAATGGAGGAAGCA 60.562 47.826 0.00 0.00 0.00 3.91
235 236 4.276642 GAGAAGGAAAATGGAGGAAGCAT 58.723 43.478 0.00 0.00 0.00 3.79
236 237 4.021916 AGAAGGAAAATGGAGGAAGCATG 58.978 43.478 0.00 0.00 0.00 4.06
237 238 2.743553 AGGAAAATGGAGGAAGCATGG 58.256 47.619 0.00 0.00 0.00 3.66
238 239 2.312741 AGGAAAATGGAGGAAGCATGGA 59.687 45.455 0.00 0.00 0.00 3.41
239 240 2.692041 GGAAAATGGAGGAAGCATGGAG 59.308 50.000 0.00 0.00 0.00 3.86
240 241 3.624777 GAAAATGGAGGAAGCATGGAGA 58.375 45.455 0.00 0.00 0.00 3.71
241 242 3.744940 AAATGGAGGAAGCATGGAGAA 57.255 42.857 0.00 0.00 0.00 2.87
242 243 3.294038 AATGGAGGAAGCATGGAGAAG 57.706 47.619 0.00 0.00 0.00 2.85
243 244 0.914644 TGGAGGAAGCATGGAGAAGG 59.085 55.000 0.00 0.00 0.00 3.46
244 245 0.182299 GGAGGAAGCATGGAGAAGGG 59.818 60.000 0.00 0.00 0.00 3.95
245 246 1.207791 GAGGAAGCATGGAGAAGGGA 58.792 55.000 0.00 0.00 0.00 4.20
246 247 1.561542 GAGGAAGCATGGAGAAGGGAA 59.438 52.381 0.00 0.00 0.00 3.97
247 248 1.995542 AGGAAGCATGGAGAAGGGAAA 59.004 47.619 0.00 0.00 0.00 3.13
248 249 2.379907 AGGAAGCATGGAGAAGGGAAAA 59.620 45.455 0.00 0.00 0.00 2.29
249 250 2.757314 GGAAGCATGGAGAAGGGAAAAG 59.243 50.000 0.00 0.00 0.00 2.27
250 251 2.521547 AGCATGGAGAAGGGAAAAGG 57.478 50.000 0.00 0.00 0.00 3.11
251 252 1.995542 AGCATGGAGAAGGGAAAAGGA 59.004 47.619 0.00 0.00 0.00 3.36
252 253 2.025510 AGCATGGAGAAGGGAAAAGGAG 60.026 50.000 0.00 0.00 0.00 3.69
253 254 2.947695 GCATGGAGAAGGGAAAAGGAGG 60.948 54.545 0.00 0.00 0.00 4.30
254 255 0.698818 TGGAGAAGGGAAAAGGAGGC 59.301 55.000 0.00 0.00 0.00 4.70
255 256 0.033991 GGAGAAGGGAAAAGGAGGCC 60.034 60.000 0.00 0.00 0.00 5.19
256 257 0.393132 GAGAAGGGAAAAGGAGGCCG 60.393 60.000 0.00 0.00 0.00 6.13
257 258 1.378646 GAAGGGAAAAGGAGGCCGG 60.379 63.158 0.00 0.00 0.00 6.13
258 259 1.848886 GAAGGGAAAAGGAGGCCGGA 61.849 60.000 5.05 0.00 0.00 5.14
259 260 1.432023 AAGGGAAAAGGAGGCCGGAA 61.432 55.000 5.05 0.00 0.00 4.30
260 261 1.378646 GGGAAAAGGAGGCCGGAAG 60.379 63.158 5.05 0.00 0.00 3.46
278 279 4.098847 GAGGGTGACTCGTCCACT 57.901 61.111 0.00 0.00 36.29 4.00
279 280 1.587054 GAGGGTGACTCGTCCACTG 59.413 63.158 0.00 0.00 36.29 3.66
280 281 2.048127 GGGTGACTCGTCCACTGC 60.048 66.667 0.00 0.00 35.05 4.40
281 282 2.048127 GGTGACTCGTCCACTGCC 60.048 66.667 0.00 0.00 35.05 4.85
282 283 2.048127 GTGACTCGTCCACTGCCC 60.048 66.667 0.00 0.00 0.00 5.36
283 284 2.203640 TGACTCGTCCACTGCCCT 60.204 61.111 0.00 0.00 0.00 5.19
284 285 1.837051 TGACTCGTCCACTGCCCTT 60.837 57.895 0.00 0.00 0.00 3.95
285 286 1.079750 GACTCGTCCACTGCCCTTC 60.080 63.158 0.00 0.00 0.00 3.46
286 287 1.816863 GACTCGTCCACTGCCCTTCA 61.817 60.000 0.00 0.00 0.00 3.02
287 288 1.194781 ACTCGTCCACTGCCCTTCAT 61.195 55.000 0.00 0.00 0.00 2.57
288 289 0.036010 CTCGTCCACTGCCCTTCATT 60.036 55.000 0.00 0.00 0.00 2.57
289 290 0.400213 TCGTCCACTGCCCTTCATTT 59.600 50.000 0.00 0.00 0.00 2.32
316 317 1.111116 TCCAACGGAACAGGACGACT 61.111 55.000 0.00 0.00 0.00 4.18
333 334 1.001597 GACTGGCTACGTCCTAATCCG 60.002 57.143 0.00 0.00 0.00 4.18
335 336 0.742505 TGGCTACGTCCTAATCCGTG 59.257 55.000 0.00 0.00 37.91 4.94
345 347 1.971357 CCTAATCCGTGGGTAGAGCAT 59.029 52.381 0.00 0.00 0.00 3.79
346 348 2.028930 CCTAATCCGTGGGTAGAGCATC 60.029 54.545 0.00 0.00 0.00 3.91
367 369 2.743183 CGATCAAATCCTGACCCTCCAC 60.743 54.545 0.00 0.00 36.69 4.02
481 487 2.034305 CAGCAGCTCAAAATATCTGGGC 59.966 50.000 0.00 2.07 40.83 5.36
566 573 0.250727 CCGTCCACACACTCCCAAAT 60.251 55.000 0.00 0.00 0.00 2.32
766 774 0.387202 AACCCATCTCTCGCATCTCG 59.613 55.000 0.00 0.00 40.15 4.04
934 948 2.048784 CGCGAGCGATCCATCCAT 60.049 61.111 12.58 0.00 42.83 3.41
1709 1723 4.394078 CCGTCGACGAGCCGAACA 62.394 66.667 37.65 0.00 43.02 3.18
1710 1724 2.427905 CGTCGACGAGCCGAACAA 60.428 61.111 33.35 0.00 43.02 2.83
1711 1725 2.426183 CGTCGACGAGCCGAACAAG 61.426 63.158 33.35 0.00 43.02 3.16
1712 1726 2.087009 GTCGACGAGCCGAACAAGG 61.087 63.158 0.00 0.00 40.51 3.61
1925 1960 4.351110 TTCTTGATTTTGGGGGATGGAT 57.649 40.909 0.00 0.00 0.00 3.41
1969 2004 2.795297 GCGAGACGAGGTCCAGAG 59.205 66.667 0.00 0.00 32.18 3.35
1990 2026 2.446435 CCGAATGGATGGGAGTGTTTT 58.554 47.619 0.00 0.00 37.49 2.43
1994 2030 2.286365 TGGATGGGAGTGTTTTGACC 57.714 50.000 0.00 0.00 0.00 4.02
2052 2088 7.889469 AGTTGATCTTGGTTAAGACTTACGTA 58.111 34.615 0.00 0.00 45.17 3.57
2053 2089 8.362639 AGTTGATCTTGGTTAAGACTTACGTAA 58.637 33.333 7.94 7.94 45.17 3.18
2144 2180 2.344741 GTGGCTGTCGACGTTAATCTTC 59.655 50.000 11.62 0.00 0.00 2.87
2270 2317 1.369091 CCTCGCCATCGGTTTTGAGG 61.369 60.000 0.00 0.00 37.29 3.86
2327 2376 2.805194 GTGGACCTGGTACTCTGTACT 58.195 52.381 11.06 0.00 0.00 2.73
2328 2377 2.492484 GTGGACCTGGTACTCTGTACTG 59.508 54.545 11.06 0.00 0.00 2.74
2329 2378 2.100989 GGACCTGGTACTCTGTACTGG 58.899 57.143 0.48 11.33 0.00 4.00
2330 2379 2.557005 GGACCTGGTACTCTGTACTGGT 60.557 54.545 17.98 17.98 0.00 4.00
2331 2380 2.492484 GACCTGGTACTCTGTACTGGTG 59.508 54.545 20.70 7.64 0.00 4.17
2332 2381 2.158355 ACCTGGTACTCTGTACTGGTGT 60.158 50.000 17.57 2.89 0.00 4.16
2333 2382 2.492484 CCTGGTACTCTGTACTGGTGTC 59.508 54.545 7.64 0.00 0.00 3.67
2361 2410 2.159099 TGGTAGAGCTTGCCGTGAATAG 60.159 50.000 0.00 0.00 0.00 1.73
2362 2411 2.100916 GGTAGAGCTTGCCGTGAATAGA 59.899 50.000 0.00 0.00 0.00 1.98
2363 2412 2.593346 AGAGCTTGCCGTGAATAGAG 57.407 50.000 0.00 0.00 0.00 2.43
2364 2413 1.827969 AGAGCTTGCCGTGAATAGAGT 59.172 47.619 0.00 0.00 0.00 3.24
2365 2414 3.024547 AGAGCTTGCCGTGAATAGAGTA 58.975 45.455 0.00 0.00 0.00 2.59
2366 2415 3.447586 AGAGCTTGCCGTGAATAGAGTAA 59.552 43.478 0.00 0.00 0.00 2.24
2367 2416 4.081642 AGAGCTTGCCGTGAATAGAGTAAA 60.082 41.667 0.00 0.00 0.00 2.01
2368 2417 4.575885 AGCTTGCCGTGAATAGAGTAAAA 58.424 39.130 0.00 0.00 0.00 1.52
2369 2418 5.186198 AGCTTGCCGTGAATAGAGTAAAAT 58.814 37.500 0.00 0.00 0.00 1.82
2370 2419 5.065218 AGCTTGCCGTGAATAGAGTAAAATG 59.935 40.000 0.00 0.00 0.00 2.32
2371 2420 4.875544 TGCCGTGAATAGAGTAAAATGC 57.124 40.909 0.00 0.00 0.00 3.56
2372 2421 4.257731 TGCCGTGAATAGAGTAAAATGCA 58.742 39.130 0.00 0.00 0.00 3.96
2373 2422 4.094294 TGCCGTGAATAGAGTAAAATGCAC 59.906 41.667 0.00 0.00 0.00 4.57
2374 2423 4.332819 GCCGTGAATAGAGTAAAATGCACT 59.667 41.667 0.00 0.00 30.56 4.40
2375 2424 5.727791 GCCGTGAATAGAGTAAAATGCACTG 60.728 44.000 0.00 0.00 30.56 3.66
2376 2425 5.220662 CCGTGAATAGAGTAAAATGCACTGG 60.221 44.000 0.00 0.00 30.56 4.00
2377 2426 5.573146 GTGAATAGAGTAAAATGCACTGGC 58.427 41.667 0.00 0.00 41.68 4.85
2378 2427 4.332543 TGAATAGAGTAAAATGCACTGGCG 59.667 41.667 0.00 0.00 45.35 5.69
2379 2428 1.453155 AGAGTAAAATGCACTGGCGG 58.547 50.000 0.00 0.00 45.35 6.13
2380 2429 1.165270 GAGTAAAATGCACTGGCGGT 58.835 50.000 0.00 0.00 45.35 5.68
2381 2430 2.027561 AGAGTAAAATGCACTGGCGGTA 60.028 45.455 0.00 0.00 45.35 4.02
2382 2431 2.081462 AGTAAAATGCACTGGCGGTAC 58.919 47.619 0.00 0.00 45.35 3.34
2383 2432 2.081462 GTAAAATGCACTGGCGGTACT 58.919 47.619 0.00 0.00 45.35 2.73
2384 2433 1.616159 AAAATGCACTGGCGGTACTT 58.384 45.000 0.00 0.00 45.35 2.24
2385 2434 0.881118 AAATGCACTGGCGGTACTTG 59.119 50.000 0.00 0.00 45.35 3.16
2386 2435 0.036164 AATGCACTGGCGGTACTTGA 59.964 50.000 0.00 0.00 45.35 3.02
2387 2436 0.036164 ATGCACTGGCGGTACTTGAA 59.964 50.000 0.00 0.00 45.35 2.69
2388 2437 0.882927 TGCACTGGCGGTACTTGAAC 60.883 55.000 0.00 0.00 45.35 3.18
2389 2438 0.602905 GCACTGGCGGTACTTGAACT 60.603 55.000 0.00 0.00 0.00 3.01
2390 2439 1.878953 CACTGGCGGTACTTGAACTT 58.121 50.000 0.00 0.00 0.00 2.66
2391 2440 1.531149 CACTGGCGGTACTTGAACTTG 59.469 52.381 0.00 0.00 0.00 3.16
2392 2441 1.156736 CTGGCGGTACTTGAACTTGG 58.843 55.000 0.00 0.00 0.00 3.61
2393 2442 0.250553 TGGCGGTACTTGAACTTGGG 60.251 55.000 0.00 0.00 0.00 4.12
2394 2443 0.035739 GGCGGTACTTGAACTTGGGA 59.964 55.000 0.00 0.00 0.00 4.37
2395 2444 1.543871 GGCGGTACTTGAACTTGGGAA 60.544 52.381 0.00 0.00 0.00 3.97
2396 2445 1.804748 GCGGTACTTGAACTTGGGAAG 59.195 52.381 0.00 0.00 0.00 3.46
2397 2446 2.549349 GCGGTACTTGAACTTGGGAAGA 60.549 50.000 0.00 0.00 0.00 2.87
2398 2447 3.735591 CGGTACTTGAACTTGGGAAGAA 58.264 45.455 0.00 0.00 0.00 2.52
2399 2448 4.131596 CGGTACTTGAACTTGGGAAGAAA 58.868 43.478 0.00 0.00 0.00 2.52
2400 2449 4.213482 CGGTACTTGAACTTGGGAAGAAAG 59.787 45.833 0.00 0.00 0.00 2.62
2401 2450 4.023107 GGTACTTGAACTTGGGAAGAAAGC 60.023 45.833 0.00 0.00 0.00 3.51
2402 2451 3.631250 ACTTGAACTTGGGAAGAAAGCA 58.369 40.909 0.00 0.00 0.00 3.91
2403 2452 3.381590 ACTTGAACTTGGGAAGAAAGCAC 59.618 43.478 0.00 0.00 0.00 4.40
2404 2453 3.011566 TGAACTTGGGAAGAAAGCACA 57.988 42.857 0.00 0.00 0.00 4.57
2405 2454 3.565307 TGAACTTGGGAAGAAAGCACAT 58.435 40.909 0.00 0.00 0.00 3.21
2406 2455 3.960102 TGAACTTGGGAAGAAAGCACATT 59.040 39.130 0.00 0.00 0.00 2.71
2407 2456 4.405358 TGAACTTGGGAAGAAAGCACATTT 59.595 37.500 0.00 0.00 0.00 2.32
2408 2457 5.104982 TGAACTTGGGAAGAAAGCACATTTT 60.105 36.000 0.00 0.00 0.00 1.82
2409 2458 4.696455 ACTTGGGAAGAAAGCACATTTTG 58.304 39.130 0.00 0.00 0.00 2.44
2410 2459 3.749665 TGGGAAGAAAGCACATTTTGG 57.250 42.857 0.00 0.00 0.00 3.28
2411 2460 3.037549 TGGGAAGAAAGCACATTTTGGT 58.962 40.909 0.00 0.00 37.63 3.67
2412 2461 3.069443 TGGGAAGAAAGCACATTTTGGTC 59.931 43.478 0.00 0.00 33.68 4.02
2413 2462 3.069443 GGGAAGAAAGCACATTTTGGTCA 59.931 43.478 0.00 0.00 33.68 4.02
2414 2463 4.051237 GGAAGAAAGCACATTTTGGTCAC 58.949 43.478 0.00 0.00 33.68 3.67
2415 2464 4.202151 GGAAGAAAGCACATTTTGGTCACT 60.202 41.667 0.00 0.00 33.68 3.41
2416 2465 4.311816 AGAAAGCACATTTTGGTCACTG 57.688 40.909 0.00 0.00 33.68 3.66
2417 2466 3.701040 AGAAAGCACATTTTGGTCACTGT 59.299 39.130 0.00 0.00 33.68 3.55
2418 2467 4.887071 AGAAAGCACATTTTGGTCACTGTA 59.113 37.500 0.00 0.00 33.68 2.74
2419 2468 4.568152 AAGCACATTTTGGTCACTGTAC 57.432 40.909 0.00 0.00 33.68 2.90
2420 2469 3.820557 AGCACATTTTGGTCACTGTACT 58.179 40.909 0.00 0.00 0.00 2.73
2421 2470 4.207165 AGCACATTTTGGTCACTGTACTT 58.793 39.130 0.00 0.00 0.00 2.24
2422 2471 4.644685 AGCACATTTTGGTCACTGTACTTT 59.355 37.500 0.00 0.00 0.00 2.66
2423 2472 5.825679 AGCACATTTTGGTCACTGTACTTTA 59.174 36.000 0.00 0.00 0.00 1.85
2424 2473 6.320164 AGCACATTTTGGTCACTGTACTTTAA 59.680 34.615 0.00 0.00 0.00 1.52
2425 2474 6.975772 GCACATTTTGGTCACTGTACTTTAAA 59.024 34.615 0.00 0.00 0.00 1.52
2426 2475 7.489757 GCACATTTTGGTCACTGTACTTTAAAA 59.510 33.333 0.00 0.00 0.00 1.52
2427 2476 9.528018 CACATTTTGGTCACTGTACTTTAAAAT 57.472 29.630 0.00 0.00 0.00 1.82
2430 2479 9.887406 ATTTTGGTCACTGTACTTTAAAATACG 57.113 29.630 2.68 1.01 0.00 3.06
2431 2480 8.659925 TTTGGTCACTGTACTTTAAAATACGA 57.340 30.769 2.68 0.00 0.00 3.43
2432 2481 7.642071 TGGTCACTGTACTTTAAAATACGAC 57.358 36.000 2.68 4.21 0.00 4.34
2433 2482 6.646240 TGGTCACTGTACTTTAAAATACGACC 59.354 38.462 17.99 17.99 0.00 4.79
2434 2483 6.646240 GGTCACTGTACTTTAAAATACGACCA 59.354 38.462 19.07 0.00 0.00 4.02
2435 2484 7.171337 GGTCACTGTACTTTAAAATACGACCAA 59.829 37.037 19.07 0.00 0.00 3.67
2436 2485 8.715088 GTCACTGTACTTTAAAATACGACCAAT 58.285 33.333 2.68 0.00 0.00 3.16
2437 2486 9.926158 TCACTGTACTTTAAAATACGACCAATA 57.074 29.630 2.68 0.00 0.00 1.90
2438 2487 9.962759 CACTGTACTTTAAAATACGACCAATAC 57.037 33.333 2.68 0.00 0.00 1.89
2439 2488 8.863049 ACTGTACTTTAAAATACGACCAATACG 58.137 33.333 2.68 0.00 0.00 3.06
2440 2489 8.183830 TGTACTTTAAAATACGACCAATACGG 57.816 34.615 2.68 0.00 42.50 4.02
2453 2502 2.538449 CCAATACGGTCACTCAATACGC 59.462 50.000 0.00 0.00 0.00 4.42
2454 2503 2.503920 ATACGGTCACTCAATACGCC 57.496 50.000 0.00 0.00 0.00 5.68
2455 2504 1.466856 TACGGTCACTCAATACGCCT 58.533 50.000 0.00 0.00 0.00 5.52
2456 2505 0.108804 ACGGTCACTCAATACGCCTG 60.109 55.000 0.00 0.00 0.00 4.85
2457 2506 1.421410 CGGTCACTCAATACGCCTGC 61.421 60.000 0.00 0.00 0.00 4.85
2458 2507 0.391130 GGTCACTCAATACGCCTGCA 60.391 55.000 0.00 0.00 0.00 4.41
2459 2508 0.721718 GTCACTCAATACGCCTGCAC 59.278 55.000 0.00 0.00 0.00 4.57
2460 2509 0.735978 TCACTCAATACGCCTGCACG 60.736 55.000 0.00 0.00 39.50 5.34
2467 2516 2.280797 ACGCCTGCACGTGATTGT 60.281 55.556 22.23 6.63 46.28 2.71
2468 2517 1.005512 ACGCCTGCACGTGATTGTA 60.006 52.632 22.23 0.00 46.28 2.41
2469 2518 1.289109 ACGCCTGCACGTGATTGTAC 61.289 55.000 22.23 0.00 46.28 2.90
2478 2527 2.060326 CGTGATTGTACGGTCACTGT 57.940 50.000 21.06 0.00 41.90 3.55
2479 2528 2.400399 CGTGATTGTACGGTCACTGTT 58.600 47.619 21.06 0.00 41.90 3.16
2480 2529 2.407361 CGTGATTGTACGGTCACTGTTC 59.593 50.000 21.06 0.00 41.90 3.18
2481 2530 3.386486 GTGATTGTACGGTCACTGTTCA 58.614 45.455 18.13 0.00 41.10 3.18
2482 2531 3.183775 GTGATTGTACGGTCACTGTTCAC 59.816 47.826 18.13 0.00 41.10 3.18
2483 2532 2.228138 TTGTACGGTCACTGTTCACC 57.772 50.000 0.00 0.00 0.00 4.02
2488 2537 2.805277 GGTCACTGTTCACCGTACG 58.195 57.895 8.69 8.69 0.00 3.67
2489 2538 1.280206 GGTCACTGTTCACCGTACGC 61.280 60.000 10.49 0.00 0.00 4.42
2490 2539 1.007038 TCACTGTTCACCGTACGCC 60.007 57.895 10.49 0.00 0.00 5.68
2491 2540 1.300311 CACTGTTCACCGTACGCCA 60.300 57.895 10.49 0.00 0.00 5.69
2492 2541 1.300388 ACTGTTCACCGTACGCCAC 60.300 57.895 10.49 3.68 0.00 5.01
2493 2542 1.006571 CTGTTCACCGTACGCCACT 60.007 57.895 10.49 0.00 0.00 4.00
2494 2543 0.599204 CTGTTCACCGTACGCCACTT 60.599 55.000 10.49 0.00 0.00 3.16
2495 2544 0.876777 TGTTCACCGTACGCCACTTG 60.877 55.000 10.49 0.00 0.00 3.16
2496 2545 0.877213 GTTCACCGTACGCCACTTGT 60.877 55.000 10.49 0.00 0.00 3.16
2497 2546 0.598158 TTCACCGTACGCCACTTGTC 60.598 55.000 10.49 0.00 0.00 3.18
2498 2547 2.049802 ACCGTACGCCACTTGTCG 60.050 61.111 10.49 0.00 0.00 4.35
2499 2548 3.475774 CCGTACGCCACTTGTCGC 61.476 66.667 10.49 0.00 0.00 5.19
2500 2549 3.475774 CGTACGCCACTTGTCGCC 61.476 66.667 0.52 0.00 0.00 5.54
2501 2550 3.475774 GTACGCCACTTGTCGCCG 61.476 66.667 0.00 0.00 0.00 6.46
2506 2555 4.680237 CCACTTGTCGCCGCTCCA 62.680 66.667 0.00 0.00 0.00 3.86
2507 2556 2.434884 CACTTGTCGCCGCTCCAT 60.435 61.111 0.00 0.00 0.00 3.41
2508 2557 2.034879 CACTTGTCGCCGCTCCATT 61.035 57.895 0.00 0.00 0.00 3.16
2509 2558 1.302511 ACTTGTCGCCGCTCCATTT 60.303 52.632 0.00 0.00 0.00 2.32
2510 2559 1.135315 CTTGTCGCCGCTCCATTTG 59.865 57.895 0.00 0.00 0.00 2.32
2511 2560 1.298157 CTTGTCGCCGCTCCATTTGA 61.298 55.000 0.00 0.00 0.00 2.69
2512 2561 1.573829 TTGTCGCCGCTCCATTTGAC 61.574 55.000 0.00 0.00 0.00 3.18
2513 2562 2.435938 TCGCCGCTCCATTTGACC 60.436 61.111 0.00 0.00 0.00 4.02
2514 2563 2.745884 CGCCGCTCCATTTGACCA 60.746 61.111 0.00 0.00 0.00 4.02
2515 2564 2.877691 GCCGCTCCATTTGACCAC 59.122 61.111 0.00 0.00 0.00 4.16
2516 2565 1.675641 GCCGCTCCATTTGACCACT 60.676 57.895 0.00 0.00 0.00 4.00
2517 2566 1.244019 GCCGCTCCATTTGACCACTT 61.244 55.000 0.00 0.00 0.00 3.16
2518 2567 0.523072 CCGCTCCATTTGACCACTTG 59.477 55.000 0.00 0.00 0.00 3.16
2519 2568 1.238439 CGCTCCATTTGACCACTTGT 58.762 50.000 0.00 0.00 0.00 3.16
2520 2569 1.608590 CGCTCCATTTGACCACTTGTT 59.391 47.619 0.00 0.00 0.00 2.83
2521 2570 2.605338 CGCTCCATTTGACCACTTGTTG 60.605 50.000 0.00 0.00 0.00 3.33
2522 2571 2.622942 GCTCCATTTGACCACTTGTTGA 59.377 45.455 0.00 0.00 0.00 3.18
2523 2572 3.550842 GCTCCATTTGACCACTTGTTGAC 60.551 47.826 0.00 0.00 0.00 3.18
2524 2573 2.955660 TCCATTTGACCACTTGTTGACC 59.044 45.455 0.00 0.00 0.00 4.02
2525 2574 2.692557 CCATTTGACCACTTGTTGACCA 59.307 45.455 0.00 0.00 0.00 4.02
2526 2575 3.131933 CCATTTGACCACTTGTTGACCAA 59.868 43.478 0.00 0.00 0.00 3.67
2527 2576 4.202243 CCATTTGACCACTTGTTGACCAAT 60.202 41.667 0.00 0.00 31.20 3.16
2528 2577 4.647424 TTTGACCACTTGTTGACCAATC 57.353 40.909 0.00 0.00 31.20 2.67
2529 2578 2.582052 TGACCACTTGTTGACCAATCC 58.418 47.619 0.00 0.00 31.20 3.01
2530 2579 1.535462 GACCACTTGTTGACCAATCCG 59.465 52.381 0.00 0.00 31.20 4.18
2531 2580 1.142060 ACCACTTGTTGACCAATCCGA 59.858 47.619 0.00 0.00 31.20 4.55
2532 2581 1.806542 CCACTTGTTGACCAATCCGAG 59.193 52.381 0.00 0.00 31.20 4.63
2533 2582 1.806542 CACTTGTTGACCAATCCGAGG 59.193 52.381 0.00 0.00 31.20 4.63
2534 2583 0.804989 CTTGTTGACCAATCCGAGGC 59.195 55.000 0.00 0.00 31.20 4.70
2535 2584 0.953471 TTGTTGACCAATCCGAGGCG 60.953 55.000 0.00 0.00 0.00 5.52
2536 2585 1.079405 GTTGACCAATCCGAGGCGA 60.079 57.895 0.00 0.00 0.00 5.54
2537 2586 1.079405 TTGACCAATCCGAGGCGAC 60.079 57.895 0.00 0.00 0.00 5.19
2538 2587 1.822114 TTGACCAATCCGAGGCGACA 61.822 55.000 0.00 0.00 0.00 4.35
2539 2588 1.519455 GACCAATCCGAGGCGACAG 60.519 63.158 0.00 0.00 0.00 3.51
2540 2589 2.892425 CCAATCCGAGGCGACAGC 60.892 66.667 0.00 0.00 44.18 4.40
2541 2590 2.185350 CAATCCGAGGCGACAGCT 59.815 61.111 0.00 0.00 44.37 4.24
2542 2591 2.169789 CAATCCGAGGCGACAGCTG 61.170 63.158 13.48 13.48 44.37 4.24
2543 2592 3.376935 AATCCGAGGCGACAGCTGG 62.377 63.158 19.93 1.57 44.37 4.85
2551 2600 4.724697 CGACAGCTGGCGTTTGCG 62.725 66.667 33.82 12.64 42.66 4.85
2552 2601 4.389576 GACAGCTGGCGTTTGCGG 62.390 66.667 19.93 0.00 44.10 5.69
2557 2606 3.601685 CTGGCGTTTGCGGGGTTT 61.602 61.111 0.00 0.00 44.10 3.27
2558 2607 3.145422 CTGGCGTTTGCGGGGTTTT 62.145 57.895 0.00 0.00 44.10 2.43
2559 2608 2.107343 GGCGTTTGCGGGGTTTTT 59.893 55.556 0.00 0.00 44.10 1.94
2582 2631 5.866335 TTTATATGTAAATTAGCCCGGCG 57.134 39.130 3.05 0.00 0.00 6.46
2583 2632 1.515081 TATGTAAATTAGCCCGGCGC 58.485 50.000 0.00 0.00 37.98 6.53
2584 2633 0.464735 ATGTAAATTAGCCCGGCGCA 60.465 50.000 10.83 0.00 41.38 6.09
2585 2634 0.464735 TGTAAATTAGCCCGGCGCAT 60.465 50.000 10.83 0.00 41.38 4.73
2586 2635 0.237498 GTAAATTAGCCCGGCGCATC 59.763 55.000 10.83 0.00 41.38 3.91
2587 2636 0.107831 TAAATTAGCCCGGCGCATCT 59.892 50.000 10.83 2.19 41.38 2.90
2588 2637 0.107831 AAATTAGCCCGGCGCATCTA 59.892 50.000 10.83 1.12 41.38 1.98
2589 2638 0.107831 AATTAGCCCGGCGCATCTAA 59.892 50.000 10.83 10.73 41.38 2.10
2590 2639 0.324943 ATTAGCCCGGCGCATCTAAT 59.675 50.000 10.83 12.51 41.38 1.73
2591 2640 0.107831 TTAGCCCGGCGCATCTAATT 59.892 50.000 10.83 0.00 41.38 1.40
2592 2641 0.107831 TAGCCCGGCGCATCTAATTT 59.892 50.000 10.83 0.00 41.38 1.82
2593 2642 1.166531 AGCCCGGCGCATCTAATTTC 61.167 55.000 10.83 0.00 41.38 2.17
2594 2643 1.444119 GCCCGGCGCATCTAATTTCA 61.444 55.000 10.83 0.00 37.47 2.69
2595 2644 1.238439 CCCGGCGCATCTAATTTCAT 58.762 50.000 10.83 0.00 0.00 2.57
2596 2645 1.197721 CCCGGCGCATCTAATTTCATC 59.802 52.381 10.83 0.00 0.00 2.92
2597 2646 1.197721 CCGGCGCATCTAATTTCATCC 59.802 52.381 10.83 0.00 0.00 3.51
2598 2647 1.872952 CGGCGCATCTAATTTCATCCA 59.127 47.619 10.83 0.00 0.00 3.41
2599 2648 2.349817 CGGCGCATCTAATTTCATCCAC 60.350 50.000 10.83 0.00 0.00 4.02
2600 2649 2.030805 GGCGCATCTAATTTCATCCACC 60.031 50.000 10.83 0.00 0.00 4.61
2601 2650 2.618241 GCGCATCTAATTTCATCCACCA 59.382 45.455 0.30 0.00 0.00 4.17
2602 2651 3.548818 GCGCATCTAATTTCATCCACCAC 60.549 47.826 0.30 0.00 0.00 4.16
2603 2652 3.003689 CGCATCTAATTTCATCCACCACC 59.996 47.826 0.00 0.00 0.00 4.61
2604 2653 3.319122 GCATCTAATTTCATCCACCACCC 59.681 47.826 0.00 0.00 0.00 4.61
2605 2654 4.796606 CATCTAATTTCATCCACCACCCT 58.203 43.478 0.00 0.00 0.00 4.34
2606 2655 4.235079 TCTAATTTCATCCACCACCCTG 57.765 45.455 0.00 0.00 0.00 4.45
2607 2656 3.849574 TCTAATTTCATCCACCACCCTGA 59.150 43.478 0.00 0.00 0.00 3.86
2608 2657 3.541242 AATTTCATCCACCACCCTGAA 57.459 42.857 0.00 0.00 0.00 3.02
2609 2658 3.541242 ATTTCATCCACCACCCTGAAA 57.459 42.857 0.00 0.00 40.66 2.69
2610 2659 3.541242 TTTCATCCACCACCCTGAAAT 57.459 42.857 0.00 0.00 33.84 2.17
2611 2660 4.666412 TTTCATCCACCACCCTGAAATA 57.334 40.909 0.00 0.00 33.84 1.40
2612 2661 4.879295 TTCATCCACCACCCTGAAATAT 57.121 40.909 0.00 0.00 0.00 1.28
2613 2662 4.437682 TCATCCACCACCCTGAAATATC 57.562 45.455 0.00 0.00 0.00 1.63
2614 2663 3.785325 TCATCCACCACCCTGAAATATCA 59.215 43.478 0.00 0.00 0.00 2.15
2625 2674 4.739046 CTGAAATATCAGTGCCGAATCC 57.261 45.455 0.00 0.00 46.60 3.01
2626 2675 3.476552 TGAAATATCAGTGCCGAATCCC 58.523 45.455 0.00 0.00 0.00 3.85
2627 2676 3.136443 TGAAATATCAGTGCCGAATCCCT 59.864 43.478 0.00 0.00 0.00 4.20
2628 2677 4.346709 TGAAATATCAGTGCCGAATCCCTA 59.653 41.667 0.00 0.00 0.00 3.53
2629 2678 4.974645 AATATCAGTGCCGAATCCCTAA 57.025 40.909 0.00 0.00 0.00 2.69
2630 2679 5.505181 AATATCAGTGCCGAATCCCTAAT 57.495 39.130 0.00 0.00 0.00 1.73
2631 2680 3.864789 ATCAGTGCCGAATCCCTAATT 57.135 42.857 0.00 0.00 0.00 1.40
2632 2681 3.194005 TCAGTGCCGAATCCCTAATTC 57.806 47.619 0.00 0.00 40.42 2.17
2633 2682 2.158813 TCAGTGCCGAATCCCTAATTCC 60.159 50.000 0.00 0.00 40.69 3.01
2634 2683 1.143073 AGTGCCGAATCCCTAATTCCC 59.857 52.381 0.00 0.00 40.69 3.97
2635 2684 0.476771 TGCCGAATCCCTAATTCCCC 59.523 55.000 0.00 0.00 40.69 4.81
2636 2685 0.476771 GCCGAATCCCTAATTCCCCA 59.523 55.000 0.00 0.00 40.69 4.96
2637 2686 1.818131 GCCGAATCCCTAATTCCCCAC 60.818 57.143 0.00 0.00 40.69 4.61
2638 2687 1.774856 CCGAATCCCTAATTCCCCACT 59.225 52.381 0.00 0.00 40.69 4.00
2639 2688 2.224548 CCGAATCCCTAATTCCCCACTC 60.225 54.545 0.00 0.00 40.69 3.51
2640 2689 2.224548 CGAATCCCTAATTCCCCACTCC 60.225 54.545 0.00 0.00 40.69 3.85
2641 2690 1.834540 ATCCCTAATTCCCCACTCCC 58.165 55.000 0.00 0.00 0.00 4.30
2642 2691 0.728843 TCCCTAATTCCCCACTCCCT 59.271 55.000 0.00 0.00 0.00 4.20
2643 2692 1.141185 CCCTAATTCCCCACTCCCTC 58.859 60.000 0.00 0.00 0.00 4.30
2644 2693 1.141185 CCTAATTCCCCACTCCCTCC 58.859 60.000 0.00 0.00 0.00 4.30
2645 2694 1.141185 CTAATTCCCCACTCCCTCCC 58.859 60.000 0.00 0.00 0.00 4.30
2646 2695 0.328158 TAATTCCCCACTCCCTCCCC 60.328 60.000 0.00 0.00 0.00 4.81
2647 2696 3.677689 ATTCCCCACTCCCTCCCCC 62.678 68.421 0.00 0.00 0.00 5.40
2650 2699 4.354943 CCCACTCCCTCCCCCTGT 62.355 72.222 0.00 0.00 0.00 4.00
2651 2700 2.204151 CCACTCCCTCCCCCTGTT 60.204 66.667 0.00 0.00 0.00 3.16
2652 2701 2.606587 CCACTCCCTCCCCCTGTTG 61.607 68.421 0.00 0.00 0.00 3.33
2653 2702 2.936032 ACTCCCTCCCCCTGTTGC 60.936 66.667 0.00 0.00 0.00 4.17
2654 2703 2.612115 CTCCCTCCCCCTGTTGCT 60.612 66.667 0.00 0.00 0.00 3.91
2655 2704 2.121506 TCCCTCCCCCTGTTGCTT 60.122 61.111 0.00 0.00 0.00 3.91
2656 2705 1.778383 TCCCTCCCCCTGTTGCTTT 60.778 57.895 0.00 0.00 0.00 3.51
2657 2706 1.607467 CCCTCCCCCTGTTGCTTTG 60.607 63.158 0.00 0.00 0.00 2.77
2658 2707 2.278330 CCTCCCCCTGTTGCTTTGC 61.278 63.158 0.00 0.00 0.00 3.68
2659 2708 2.597217 TCCCCCTGTTGCTTTGCG 60.597 61.111 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.404946 TGTGATAGCTTACCGAACTTACAC 58.595 41.667 0.00 0.00 0.00 2.90
1 2 5.393787 CCTGTGATAGCTTACCGAACTTACA 60.394 44.000 0.00 0.00 0.00 2.41
2 3 5.041940 CCTGTGATAGCTTACCGAACTTAC 58.958 45.833 0.00 0.00 0.00 2.34
3 4 4.098960 CCCTGTGATAGCTTACCGAACTTA 59.901 45.833 0.00 0.00 0.00 2.24
4 5 3.118738 CCCTGTGATAGCTTACCGAACTT 60.119 47.826 0.00 0.00 0.00 2.66
5 6 2.431057 CCCTGTGATAGCTTACCGAACT 59.569 50.000 0.00 0.00 0.00 3.01
6 7 2.483188 CCCCTGTGATAGCTTACCGAAC 60.483 54.545 0.00 0.00 0.00 3.95
7 8 1.760613 CCCCTGTGATAGCTTACCGAA 59.239 52.381 0.00 0.00 0.00 4.30
8 9 1.342674 ACCCCTGTGATAGCTTACCGA 60.343 52.381 0.00 0.00 0.00 4.69
9 10 1.120530 ACCCCTGTGATAGCTTACCG 58.879 55.000 0.00 0.00 0.00 4.02
10 11 1.838077 ACACCCCTGTGATAGCTTACC 59.162 52.381 0.00 0.00 45.76 2.85
11 12 4.748277 TTACACCCCTGTGATAGCTTAC 57.252 45.455 0.00 0.00 45.76 2.34
12 13 5.486063 TCTTTTACACCCCTGTGATAGCTTA 59.514 40.000 0.00 0.00 45.76 3.09
13 14 4.288626 TCTTTTACACCCCTGTGATAGCTT 59.711 41.667 0.00 0.00 45.76 3.74
14 15 3.844211 TCTTTTACACCCCTGTGATAGCT 59.156 43.478 0.00 0.00 45.76 3.32
15 16 4.192317 CTCTTTTACACCCCTGTGATAGC 58.808 47.826 0.00 0.00 45.76 2.97
16 17 5.422214 ACTCTTTTACACCCCTGTGATAG 57.578 43.478 0.00 0.00 45.76 2.08
17 18 5.781306 TGTACTCTTTTACACCCCTGTGATA 59.219 40.000 0.00 0.00 45.76 2.15
18 19 4.595781 TGTACTCTTTTACACCCCTGTGAT 59.404 41.667 0.00 0.00 45.76 3.06
19 20 3.968649 TGTACTCTTTTACACCCCTGTGA 59.031 43.478 0.00 0.00 45.76 3.58
20 21 4.062991 GTGTACTCTTTTACACCCCTGTG 58.937 47.826 2.57 0.00 44.16 3.66
21 22 4.347360 GTGTACTCTTTTACACCCCTGT 57.653 45.455 2.57 0.00 44.16 4.00
41 42 1.228737 CCCCGGGAACACCAAATGT 60.229 57.895 26.32 0.00 46.42 2.71
42 43 2.645192 GCCCCGGGAACACCAAATG 61.645 63.158 26.32 0.94 40.22 2.32
43 44 2.283604 GCCCCGGGAACACCAAAT 60.284 61.111 26.32 0.00 40.22 2.32
44 45 3.822035 TGCCCCGGGAACACCAAA 61.822 61.111 26.32 0.00 40.22 3.28
45 46 4.589675 GTGCCCCGGGAACACCAA 62.590 66.667 27.46 1.90 40.22 3.67
59 60 2.042639 ATCCAATGGCCCTGGTGC 60.043 61.111 18.14 0.00 35.30 5.01
60 61 0.754217 CAGATCCAATGGCCCTGGTG 60.754 60.000 18.14 7.93 35.30 4.17
61 62 1.616921 CAGATCCAATGGCCCTGGT 59.383 57.895 18.14 7.96 35.30 4.00
62 63 1.831286 GCAGATCCAATGGCCCTGG 60.831 63.158 13.74 13.74 35.05 4.45
63 64 2.191513 CGCAGATCCAATGGCCCTG 61.192 63.158 13.72 13.72 0.00 4.45
64 65 1.713005 ATCGCAGATCCAATGGCCCT 61.713 55.000 0.00 0.00 45.12 5.19
65 66 0.036732 TATCGCAGATCCAATGGCCC 59.963 55.000 0.00 0.00 45.12 5.80
66 67 1.160137 GTATCGCAGATCCAATGGCC 58.840 55.000 0.00 0.00 45.12 5.36
67 68 1.882912 TGTATCGCAGATCCAATGGC 58.117 50.000 0.00 0.00 45.12 4.40
68 69 3.251729 CCTTTGTATCGCAGATCCAATGG 59.748 47.826 0.00 0.00 45.12 3.16
69 70 4.024556 GTCCTTTGTATCGCAGATCCAATG 60.025 45.833 0.00 0.41 45.12 2.82
70 71 4.130118 GTCCTTTGTATCGCAGATCCAAT 58.870 43.478 0.00 0.00 45.12 3.16
71 72 3.055458 TGTCCTTTGTATCGCAGATCCAA 60.055 43.478 0.00 0.00 45.12 3.53
72 73 2.499693 TGTCCTTTGTATCGCAGATCCA 59.500 45.455 0.00 0.00 45.12 3.41
73 74 3.179443 TGTCCTTTGTATCGCAGATCC 57.821 47.619 0.00 0.00 45.12 3.36
74 75 4.572389 ACATTGTCCTTTGTATCGCAGATC 59.428 41.667 0.00 0.00 45.12 2.75
75 76 4.517285 ACATTGTCCTTTGTATCGCAGAT 58.483 39.130 0.00 0.00 45.12 2.90
76 77 3.932710 GACATTGTCCTTTGTATCGCAGA 59.067 43.478 5.44 0.00 45.75 4.26
77 78 3.935203 AGACATTGTCCTTTGTATCGCAG 59.065 43.478 13.14 0.00 32.18 5.18
78 79 3.937814 AGACATTGTCCTTTGTATCGCA 58.062 40.909 13.14 0.00 32.18 5.10
79 80 5.523916 ACATAGACATTGTCCTTTGTATCGC 59.476 40.000 13.14 0.00 32.18 4.58
80 81 7.254455 GGAACATAGACATTGTCCTTTGTATCG 60.254 40.741 13.14 3.25 32.18 2.92
81 82 7.552687 TGGAACATAGACATTGTCCTTTGTATC 59.447 37.037 13.14 12.45 32.18 2.24
82 83 7.336931 GTGGAACATAGACATTGTCCTTTGTAT 59.663 37.037 13.14 1.92 44.52 2.29
83 84 6.653320 GTGGAACATAGACATTGTCCTTTGTA 59.347 38.462 13.14 0.00 44.52 2.41
84 85 5.473504 GTGGAACATAGACATTGTCCTTTGT 59.526 40.000 13.14 11.14 44.52 2.83
85 86 5.473162 TGTGGAACATAGACATTGTCCTTTG 59.527 40.000 13.14 10.57 45.67 2.77
86 87 5.630121 TGTGGAACATAGACATTGTCCTTT 58.370 37.500 13.14 1.86 45.67 3.11
87 88 5.241403 TGTGGAACATAGACATTGTCCTT 57.759 39.130 13.14 0.00 45.67 3.36
88 89 4.908601 TGTGGAACATAGACATTGTCCT 57.091 40.909 13.14 3.95 45.67 3.85
102 103 4.109766 GTTTTGTGCTAACCTTGTGGAAC 58.890 43.478 0.00 0.00 37.04 3.62
103 104 3.764434 TGTTTTGTGCTAACCTTGTGGAA 59.236 39.130 0.00 0.00 37.04 3.53
104 105 3.129638 GTGTTTTGTGCTAACCTTGTGGA 59.870 43.478 0.00 0.00 37.04 4.02
105 106 3.443976 GTGTTTTGTGCTAACCTTGTGG 58.556 45.455 0.00 0.00 39.83 4.17
106 107 3.443976 GGTGTTTTGTGCTAACCTTGTG 58.556 45.455 0.00 0.00 0.00 3.33
107 108 2.429250 GGGTGTTTTGTGCTAACCTTGT 59.571 45.455 0.00 0.00 0.00 3.16
108 109 2.223947 GGGGTGTTTTGTGCTAACCTTG 60.224 50.000 0.00 0.00 0.00 3.61
109 110 2.036387 GGGGTGTTTTGTGCTAACCTT 58.964 47.619 0.00 0.00 0.00 3.50
110 111 1.063567 TGGGGTGTTTTGTGCTAACCT 60.064 47.619 0.00 0.00 0.00 3.50
111 112 1.404843 TGGGGTGTTTTGTGCTAACC 58.595 50.000 0.00 0.00 0.00 2.85
112 113 2.625790 TCATGGGGTGTTTTGTGCTAAC 59.374 45.455 0.00 0.00 0.00 2.34
113 114 2.890311 CTCATGGGGTGTTTTGTGCTAA 59.110 45.455 0.00 0.00 0.00 3.09
114 115 2.158534 ACTCATGGGGTGTTTTGTGCTA 60.159 45.455 0.00 0.00 0.00 3.49
115 116 1.331214 CTCATGGGGTGTTTTGTGCT 58.669 50.000 0.00 0.00 0.00 4.40
116 117 1.000274 GACTCATGGGGTGTTTTGTGC 60.000 52.381 0.00 0.00 0.00 4.57
117 118 1.613437 GGACTCATGGGGTGTTTTGTG 59.387 52.381 0.00 0.00 0.00 3.33
118 119 1.480498 GGGACTCATGGGGTGTTTTGT 60.480 52.381 0.00 0.00 0.00 2.83
119 120 1.256812 GGGACTCATGGGGTGTTTTG 58.743 55.000 0.00 0.00 0.00 2.44
120 121 0.856982 TGGGACTCATGGGGTGTTTT 59.143 50.000 0.00 0.00 0.00 2.43
121 122 0.112412 GTGGGACTCATGGGGTGTTT 59.888 55.000 0.00 0.00 0.00 2.83
122 123 1.065410 TGTGGGACTCATGGGGTGTT 61.065 55.000 0.00 0.00 0.00 3.32
123 124 1.065410 TTGTGGGACTCATGGGGTGT 61.065 55.000 0.00 0.00 0.00 4.16
124 125 0.332632 ATTGTGGGACTCATGGGGTG 59.667 55.000 0.00 0.00 0.00 4.61
125 126 1.084018 AATTGTGGGACTCATGGGGT 58.916 50.000 0.00 0.00 0.00 4.95
126 127 1.477553 CAATTGTGGGACTCATGGGG 58.522 55.000 0.00 0.00 0.00 4.96
127 128 0.819582 GCAATTGTGGGACTCATGGG 59.180 55.000 7.40 0.00 0.00 4.00
128 129 0.452987 CGCAATTGTGGGACTCATGG 59.547 55.000 11.28 0.00 40.06 3.66
129 130 0.179156 GCGCAATTGTGGGACTCATG 60.179 55.000 20.04 0.00 40.06 3.07
130 131 1.647545 CGCGCAATTGTGGGACTCAT 61.648 55.000 26.79 0.00 40.06 2.90
131 132 2.324330 CGCGCAATTGTGGGACTCA 61.324 57.895 26.79 0.00 40.06 3.41
132 133 1.017177 TACGCGCAATTGTGGGACTC 61.017 55.000 34.34 12.22 40.06 3.36
133 134 0.392461 ATACGCGCAATTGTGGGACT 60.392 50.000 34.34 20.90 40.06 3.85
134 135 0.248054 CATACGCGCAATTGTGGGAC 60.248 55.000 34.34 12.88 40.06 4.46
135 136 1.987704 GCATACGCGCAATTGTGGGA 61.988 55.000 34.34 21.28 40.06 4.37
136 137 1.586042 GCATACGCGCAATTGTGGG 60.586 57.895 28.38 28.38 43.07 4.61
137 138 1.586042 GGCATACGCGCAATTGTGG 60.586 57.895 20.04 12.43 39.92 4.17
138 139 3.981303 GGCATACGCGCAATTGTG 58.019 55.556 14.75 14.75 39.92 3.33
146 147 2.659897 GAGCTCTGGGCATACGCG 60.660 66.667 3.53 3.53 44.79 6.01
147 148 2.280457 GGAGCTCTGGGCATACGC 60.280 66.667 14.64 0.00 44.79 4.42
148 149 2.028190 CGGAGCTCTGGGCATACG 59.972 66.667 15.27 2.37 44.79 3.06
149 150 1.068250 GTCGGAGCTCTGGGCATAC 59.932 63.158 22.38 9.03 44.79 2.39
150 151 2.134287 GGTCGGAGCTCTGGGCATA 61.134 63.158 22.38 0.00 44.79 3.14
151 152 3.474570 GGTCGGAGCTCTGGGCAT 61.475 66.667 22.38 0.00 44.79 4.40
154 155 3.465403 CAGGGTCGGAGCTCTGGG 61.465 72.222 22.38 8.07 0.00 4.45
155 156 2.363018 TCAGGGTCGGAGCTCTGG 60.363 66.667 22.38 10.62 0.00 3.86
156 157 2.716017 GGTCAGGGTCGGAGCTCTG 61.716 68.421 16.98 16.98 0.00 3.35
157 158 2.363147 GGTCAGGGTCGGAGCTCT 60.363 66.667 14.64 0.01 0.00 4.09
158 159 3.827898 CGGTCAGGGTCGGAGCTC 61.828 72.222 4.71 4.71 0.00 4.09
159 160 3.663815 ATCGGTCAGGGTCGGAGCT 62.664 63.158 7.19 0.00 0.00 4.09
160 161 3.148279 ATCGGTCAGGGTCGGAGC 61.148 66.667 0.00 0.00 0.00 4.70
161 162 2.786495 CCATCGGTCAGGGTCGGAG 61.786 68.421 0.00 0.00 0.00 4.63
162 163 2.583298 ATCCATCGGTCAGGGTCGGA 62.583 60.000 0.00 0.00 0.00 4.55
163 164 2.088674 GATCCATCGGTCAGGGTCGG 62.089 65.000 0.00 0.00 0.00 4.79
164 165 1.364171 GATCCATCGGTCAGGGTCG 59.636 63.158 0.00 0.00 0.00 4.79
165 166 0.105039 GTGATCCATCGGTCAGGGTC 59.895 60.000 0.00 0.00 35.54 4.46
166 167 0.617535 TGTGATCCATCGGTCAGGGT 60.618 55.000 0.00 0.00 0.00 4.34
167 168 0.179073 GTGTGATCCATCGGTCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
168 169 0.536724 TGTGTGATCCATCGGTCAGG 59.463 55.000 0.00 0.00 0.00 3.86
169 170 2.477825 GATGTGTGATCCATCGGTCAG 58.522 52.381 0.00 0.00 30.34 3.51
170 171 1.138859 GGATGTGTGATCCATCGGTCA 59.861 52.381 0.00 0.00 39.68 4.02
171 172 1.138859 TGGATGTGTGATCCATCGGTC 59.861 52.381 0.00 0.00 42.81 4.79
172 173 1.203237 TGGATGTGTGATCCATCGGT 58.797 50.000 0.00 0.00 42.81 4.69
173 174 2.216046 CTTGGATGTGTGATCCATCGG 58.784 52.381 4.25 0.00 46.51 4.18
174 175 1.600957 GCTTGGATGTGTGATCCATCG 59.399 52.381 4.25 1.23 46.51 3.84
175 176 2.877168 GAGCTTGGATGTGTGATCCATC 59.123 50.000 4.25 2.72 46.51 3.51
176 177 2.240414 TGAGCTTGGATGTGTGATCCAT 59.760 45.455 4.25 0.00 46.51 3.41
177 178 1.629861 TGAGCTTGGATGTGTGATCCA 59.370 47.619 0.00 0.00 45.71 3.41
178 179 2.286872 CTGAGCTTGGATGTGTGATCC 58.713 52.381 0.00 0.00 38.66 3.36
179 180 1.669779 GCTGAGCTTGGATGTGTGATC 59.330 52.381 0.00 0.00 0.00 2.92
180 181 1.747709 GCTGAGCTTGGATGTGTGAT 58.252 50.000 0.00 0.00 0.00 3.06
181 182 0.671472 CGCTGAGCTTGGATGTGTGA 60.671 55.000 1.78 0.00 0.00 3.58
182 183 1.642037 CCGCTGAGCTTGGATGTGTG 61.642 60.000 1.78 0.00 0.00 3.82
183 184 1.376424 CCGCTGAGCTTGGATGTGT 60.376 57.895 1.78 0.00 0.00 3.72
184 185 2.758089 GCCGCTGAGCTTGGATGTG 61.758 63.158 1.78 0.00 0.00 3.21
185 186 2.437359 GCCGCTGAGCTTGGATGT 60.437 61.111 1.78 0.00 0.00 3.06
186 187 2.437180 TGCCGCTGAGCTTGGATG 60.437 61.111 1.78 0.00 0.00 3.51
187 188 2.437359 GTGCCGCTGAGCTTGGAT 60.437 61.111 1.78 0.00 0.00 3.41
188 189 2.753009 AATGTGCCGCTGAGCTTGGA 62.753 55.000 1.78 0.00 0.00 3.53
189 190 2.338015 AATGTGCCGCTGAGCTTGG 61.338 57.895 1.78 0.00 0.00 3.61
190 191 1.154093 CAATGTGCCGCTGAGCTTG 60.154 57.895 1.78 0.00 0.00 4.01
191 192 2.986306 GCAATGTGCCGCTGAGCTT 61.986 57.895 1.78 0.00 37.42 3.74
192 193 3.437795 GCAATGTGCCGCTGAGCT 61.438 61.111 1.78 0.00 37.42 4.09
193 194 3.740397 TGCAATGTGCCGCTGAGC 61.740 61.111 0.00 0.00 44.23 4.26
194 195 2.177531 GTGCAATGTGCCGCTGAG 59.822 61.111 0.00 0.00 44.23 3.35
195 196 3.725459 CGTGCAATGTGCCGCTGA 61.725 61.111 0.00 0.00 44.23 4.26
196 197 4.764336 CCGTGCAATGTGCCGCTG 62.764 66.667 0.00 0.00 44.23 5.18
198 199 4.465512 CTCCGTGCAATGTGCCGC 62.466 66.667 0.00 0.00 44.23 6.53
199 200 2.244436 CTTCTCCGTGCAATGTGCCG 62.244 60.000 0.00 1.42 44.23 5.69
200 201 1.503542 CTTCTCCGTGCAATGTGCC 59.496 57.895 0.00 0.00 44.23 5.01
201 202 0.955428 TCCTTCTCCGTGCAATGTGC 60.955 55.000 0.00 0.00 45.29 4.57
202 203 1.522668 TTCCTTCTCCGTGCAATGTG 58.477 50.000 0.00 0.00 0.00 3.21
203 204 2.270352 TTTCCTTCTCCGTGCAATGT 57.730 45.000 0.00 0.00 0.00 2.71
204 205 3.504863 CATTTTCCTTCTCCGTGCAATG 58.495 45.455 0.00 0.00 0.00 2.82
205 206 2.493278 CCATTTTCCTTCTCCGTGCAAT 59.507 45.455 0.00 0.00 0.00 3.56
206 207 1.885887 CCATTTTCCTTCTCCGTGCAA 59.114 47.619 0.00 0.00 0.00 4.08
207 208 1.073125 TCCATTTTCCTTCTCCGTGCA 59.927 47.619 0.00 0.00 0.00 4.57
208 209 1.740025 CTCCATTTTCCTTCTCCGTGC 59.260 52.381 0.00 0.00 0.00 5.34
209 210 2.027192 TCCTCCATTTTCCTTCTCCGTG 60.027 50.000 0.00 0.00 0.00 4.94
210 211 2.266279 TCCTCCATTTTCCTTCTCCGT 58.734 47.619 0.00 0.00 0.00 4.69
211 212 3.274288 CTTCCTCCATTTTCCTTCTCCG 58.726 50.000 0.00 0.00 0.00 4.63
212 213 3.020274 GCTTCCTCCATTTTCCTTCTCC 58.980 50.000 0.00 0.00 0.00 3.71
213 214 3.690460 TGCTTCCTCCATTTTCCTTCTC 58.310 45.455 0.00 0.00 0.00 2.87
214 215 3.814504 TGCTTCCTCCATTTTCCTTCT 57.185 42.857 0.00 0.00 0.00 2.85
215 216 3.131755 CCATGCTTCCTCCATTTTCCTTC 59.868 47.826 0.00 0.00 0.00 3.46
216 217 3.102204 CCATGCTTCCTCCATTTTCCTT 58.898 45.455 0.00 0.00 0.00 3.36
217 218 2.312741 TCCATGCTTCCTCCATTTTCCT 59.687 45.455 0.00 0.00 0.00 3.36
218 219 2.692041 CTCCATGCTTCCTCCATTTTCC 59.308 50.000 0.00 0.00 0.00 3.13
219 220 3.624777 TCTCCATGCTTCCTCCATTTTC 58.375 45.455 0.00 0.00 0.00 2.29
220 221 3.744940 TCTCCATGCTTCCTCCATTTT 57.255 42.857 0.00 0.00 0.00 1.82
221 222 3.626729 CCTTCTCCATGCTTCCTCCATTT 60.627 47.826 0.00 0.00 0.00 2.32
222 223 2.091994 CCTTCTCCATGCTTCCTCCATT 60.092 50.000 0.00 0.00 0.00 3.16
223 224 1.493871 CCTTCTCCATGCTTCCTCCAT 59.506 52.381 0.00 0.00 0.00 3.41
224 225 0.914644 CCTTCTCCATGCTTCCTCCA 59.085 55.000 0.00 0.00 0.00 3.86
225 226 0.182299 CCCTTCTCCATGCTTCCTCC 59.818 60.000 0.00 0.00 0.00 4.30
226 227 1.207791 TCCCTTCTCCATGCTTCCTC 58.792 55.000 0.00 0.00 0.00 3.71
227 228 1.673767 TTCCCTTCTCCATGCTTCCT 58.326 50.000 0.00 0.00 0.00 3.36
228 229 2.514458 TTTCCCTTCTCCATGCTTCC 57.486 50.000 0.00 0.00 0.00 3.46
229 230 2.757314 CCTTTTCCCTTCTCCATGCTTC 59.243 50.000 0.00 0.00 0.00 3.86
230 231 2.379907 TCCTTTTCCCTTCTCCATGCTT 59.620 45.455 0.00 0.00 0.00 3.91
231 232 1.995542 TCCTTTTCCCTTCTCCATGCT 59.004 47.619 0.00 0.00 0.00 3.79
232 233 2.373224 CTCCTTTTCCCTTCTCCATGC 58.627 52.381 0.00 0.00 0.00 4.06
233 234 2.947695 GCCTCCTTTTCCCTTCTCCATG 60.948 54.545 0.00 0.00 0.00 3.66
234 235 1.286257 GCCTCCTTTTCCCTTCTCCAT 59.714 52.381 0.00 0.00 0.00 3.41
235 236 0.698818 GCCTCCTTTTCCCTTCTCCA 59.301 55.000 0.00 0.00 0.00 3.86
236 237 0.033991 GGCCTCCTTTTCCCTTCTCC 60.034 60.000 0.00 0.00 0.00 3.71
237 238 0.393132 CGGCCTCCTTTTCCCTTCTC 60.393 60.000 0.00 0.00 0.00 2.87
238 239 1.685820 CGGCCTCCTTTTCCCTTCT 59.314 57.895 0.00 0.00 0.00 2.85
239 240 1.378646 CCGGCCTCCTTTTCCCTTC 60.379 63.158 0.00 0.00 0.00 3.46
240 241 1.432023 TTCCGGCCTCCTTTTCCCTT 61.432 55.000 0.00 0.00 0.00 3.95
241 242 1.850755 TTCCGGCCTCCTTTTCCCT 60.851 57.895 0.00 0.00 0.00 4.20
242 243 1.378646 CTTCCGGCCTCCTTTTCCC 60.379 63.158 0.00 0.00 0.00 3.97
243 244 1.378646 CCTTCCGGCCTCCTTTTCC 60.379 63.158 0.00 0.00 0.00 3.13
244 245 0.393132 CTCCTTCCGGCCTCCTTTTC 60.393 60.000 0.00 0.00 0.00 2.29
245 246 1.685820 CTCCTTCCGGCCTCCTTTT 59.314 57.895 0.00 0.00 0.00 2.27
246 247 2.301738 CCTCCTTCCGGCCTCCTTT 61.302 63.158 0.00 0.00 0.00 3.11
247 248 2.689034 CCTCCTTCCGGCCTCCTT 60.689 66.667 0.00 0.00 0.00 3.36
248 249 4.806339 CCCTCCTTCCGGCCTCCT 62.806 72.222 0.00 0.00 0.00 3.69
250 251 3.787001 CACCCTCCTTCCGGCCTC 61.787 72.222 0.00 0.00 0.00 4.70
251 252 4.332543 TCACCCTCCTTCCGGCCT 62.333 66.667 0.00 0.00 0.00 5.19
252 253 4.097361 GTCACCCTCCTTCCGGCC 62.097 72.222 0.00 0.00 0.00 6.13
253 254 3.003763 AGTCACCCTCCTTCCGGC 61.004 66.667 0.00 0.00 0.00 6.13
254 255 2.711922 CGAGTCACCCTCCTTCCGG 61.712 68.421 0.00 0.00 36.82 5.14
255 256 1.935327 GACGAGTCACCCTCCTTCCG 61.935 65.000 0.00 0.00 36.82 4.30
256 257 1.605971 GGACGAGTCACCCTCCTTCC 61.606 65.000 5.55 0.00 36.82 3.46
257 258 0.898789 TGGACGAGTCACCCTCCTTC 60.899 60.000 5.55 0.00 36.82 3.46
258 259 1.155390 TGGACGAGTCACCCTCCTT 59.845 57.895 5.55 0.00 36.82 3.36
259 260 1.606889 GTGGACGAGTCACCCTCCT 60.607 63.158 5.55 0.00 36.82 3.69
260 261 1.606889 AGTGGACGAGTCACCCTCC 60.607 63.158 5.55 0.00 36.82 4.30
261 262 1.587054 CAGTGGACGAGTCACCCTC 59.413 63.158 5.55 0.00 35.87 4.30
262 263 2.574955 GCAGTGGACGAGTCACCCT 61.575 63.158 5.55 0.00 35.87 4.34
263 264 2.048127 GCAGTGGACGAGTCACCC 60.048 66.667 5.55 0.00 35.87 4.61
264 265 2.048127 GGCAGTGGACGAGTCACC 60.048 66.667 5.55 0.00 35.87 4.02
265 266 2.048127 GGGCAGTGGACGAGTCAC 60.048 66.667 5.55 2.32 35.51 3.67
266 267 1.816863 GAAGGGCAGTGGACGAGTCA 61.817 60.000 5.55 0.00 0.00 3.41
267 268 1.079750 GAAGGGCAGTGGACGAGTC 60.080 63.158 0.00 0.00 0.00 3.36
268 269 1.194781 ATGAAGGGCAGTGGACGAGT 61.195 55.000 0.00 0.00 0.00 4.18
269 270 0.036010 AATGAAGGGCAGTGGACGAG 60.036 55.000 0.00 0.00 0.00 4.18
270 271 0.400213 AAATGAAGGGCAGTGGACGA 59.600 50.000 0.00 0.00 0.00 4.20
271 272 1.247567 AAAATGAAGGGCAGTGGACG 58.752 50.000 0.00 0.00 0.00 4.79
288 289 5.182380 GTCCTGTTCCGTTGGATCATAAAAA 59.818 40.000 0.00 0.00 31.96 1.94
289 290 4.698304 GTCCTGTTCCGTTGGATCATAAAA 59.302 41.667 0.00 0.00 31.96 1.52
302 303 1.592400 TAGCCAGTCGTCCTGTTCCG 61.592 60.000 4.59 0.00 39.74 4.30
316 317 0.742505 CACGGATTAGGACGTAGCCA 59.257 55.000 0.00 0.00 42.04 4.75
333 334 2.890808 TTGATCGATGCTCTACCCAC 57.109 50.000 0.54 0.00 0.00 4.61
335 336 3.007398 AGGATTTGATCGATGCTCTACCC 59.993 47.826 0.54 0.00 0.00 3.69
345 347 1.762957 GGAGGGTCAGGATTTGATCGA 59.237 52.381 0.00 0.00 37.84 3.59
346 348 1.486310 TGGAGGGTCAGGATTTGATCG 59.514 52.381 0.00 0.00 37.84 3.69
367 369 0.530211 CAGAGCCGCTTGATCTGAGG 60.530 60.000 11.60 0.00 42.48 3.86
462 468 1.002033 CGCCCAGATATTTTGAGCTGC 60.002 52.381 0.00 0.00 31.31 5.25
566 573 2.975799 GGAGCGTGCGGTTTTCCA 60.976 61.111 0.00 0.00 40.70 3.53
824 837 4.124943 TCGGAGAGGGGAGACGGG 62.125 72.222 0.00 0.00 0.00 5.28
901 914 1.643868 CGCGGCTATGAAACCAAGCA 61.644 55.000 0.00 0.00 38.01 3.91
970 984 5.120830 ACAACAATTTTCTCTTCTCGATCCG 59.879 40.000 0.00 0.00 0.00 4.18
1709 1723 0.035915 GCTCGCTTCCTTCCTTCCTT 60.036 55.000 0.00 0.00 0.00 3.36
1710 1724 1.599576 GCTCGCTTCCTTCCTTCCT 59.400 57.895 0.00 0.00 0.00 3.36
1711 1725 1.450491 GGCTCGCTTCCTTCCTTCC 60.450 63.158 0.00 0.00 0.00 3.46
1712 1726 0.742635 CAGGCTCGCTTCCTTCCTTC 60.743 60.000 0.00 0.00 0.00 3.46
1906 1940 2.103601 GCATCCATCCCCCAAAATCAAG 59.896 50.000 0.00 0.00 0.00 3.02
1909 1943 1.792115 TGCATCCATCCCCCAAAATC 58.208 50.000 0.00 0.00 0.00 2.17
1910 1944 2.267160 TTGCATCCATCCCCCAAAAT 57.733 45.000 0.00 0.00 0.00 1.82
1920 1954 4.529377 ACCACAAGATCTTTTTGCATCCAT 59.471 37.500 4.86 0.00 0.00 3.41
1925 1960 5.136828 TCCTAACCACAAGATCTTTTTGCA 58.863 37.500 4.86 0.00 0.00 4.08
1969 2004 0.394352 AACACTCCCATCCATTCGGC 60.394 55.000 0.00 0.00 0.00 5.54
1990 2026 1.372872 CATCACGCACAGACGGTCA 60.373 57.895 11.27 0.00 37.37 4.02
1994 2030 3.989705 TTTAATCATCACGCACAGACG 57.010 42.857 0.00 0.00 39.50 4.18
2102 2138 4.908877 TCGAACGCACACGACGCA 62.909 61.111 0.00 0.00 43.93 5.24
2144 2180 1.421410 GCGGCGATGTGTGGTTAGAG 61.421 60.000 12.98 0.00 0.00 2.43
2270 2317 1.081906 CGGTGTGTGCATGCACTTC 60.082 57.895 41.43 33.54 46.30 3.01
2327 2376 0.105401 TCTACCACCACCAGACACCA 60.105 55.000 0.00 0.00 0.00 4.17
2328 2377 0.608640 CTCTACCACCACCAGACACC 59.391 60.000 0.00 0.00 0.00 4.16
2329 2378 0.037232 GCTCTACCACCACCAGACAC 60.037 60.000 0.00 0.00 0.00 3.67
2330 2379 0.178932 AGCTCTACCACCACCAGACA 60.179 55.000 0.00 0.00 0.00 3.41
2331 2380 0.977395 AAGCTCTACCACCACCAGAC 59.023 55.000 0.00 0.00 0.00 3.51
2332 2381 0.976641 CAAGCTCTACCACCACCAGA 59.023 55.000 0.00 0.00 0.00 3.86
2333 2382 0.674895 GCAAGCTCTACCACCACCAG 60.675 60.000 0.00 0.00 0.00 4.00
2361 2410 1.165270 ACCGCCAGTGCATTTTACTC 58.835 50.000 0.00 0.00 37.32 2.59
2362 2411 2.081462 GTACCGCCAGTGCATTTTACT 58.919 47.619 0.00 0.00 37.32 2.24
2363 2412 2.081462 AGTACCGCCAGTGCATTTTAC 58.919 47.619 0.00 0.00 37.32 2.01
2364 2413 2.483014 AGTACCGCCAGTGCATTTTA 57.517 45.000 0.00 0.00 37.32 1.52
2365 2414 1.269448 CAAGTACCGCCAGTGCATTTT 59.731 47.619 0.00 0.00 37.32 1.82
2366 2415 0.881118 CAAGTACCGCCAGTGCATTT 59.119 50.000 0.00 0.00 37.32 2.32
2367 2416 0.036164 TCAAGTACCGCCAGTGCATT 59.964 50.000 0.00 0.00 37.32 3.56
2368 2417 0.036164 TTCAAGTACCGCCAGTGCAT 59.964 50.000 0.00 0.00 37.32 3.96
2369 2418 0.882927 GTTCAAGTACCGCCAGTGCA 60.883 55.000 0.00 0.00 37.32 4.57
2370 2419 0.602905 AGTTCAAGTACCGCCAGTGC 60.603 55.000 0.00 0.00 0.00 4.40
2371 2420 1.531149 CAAGTTCAAGTACCGCCAGTG 59.469 52.381 0.00 0.00 0.00 3.66
2372 2421 1.542547 CCAAGTTCAAGTACCGCCAGT 60.543 52.381 0.00 0.00 0.00 4.00
2373 2422 1.156736 CCAAGTTCAAGTACCGCCAG 58.843 55.000 0.00 0.00 0.00 4.85
2374 2423 0.250553 CCCAAGTTCAAGTACCGCCA 60.251 55.000 0.00 0.00 0.00 5.69
2375 2424 0.035739 TCCCAAGTTCAAGTACCGCC 59.964 55.000 0.00 0.00 0.00 6.13
2376 2425 1.804748 CTTCCCAAGTTCAAGTACCGC 59.195 52.381 0.00 0.00 0.00 5.68
2377 2426 3.396260 TCTTCCCAAGTTCAAGTACCG 57.604 47.619 0.00 0.00 0.00 4.02
2378 2427 4.023107 GCTTTCTTCCCAAGTTCAAGTACC 60.023 45.833 0.00 0.00 0.00 3.34
2379 2428 4.578928 TGCTTTCTTCCCAAGTTCAAGTAC 59.421 41.667 0.00 0.00 0.00 2.73
2380 2429 4.578928 GTGCTTTCTTCCCAAGTTCAAGTA 59.421 41.667 0.00 0.00 0.00 2.24
2381 2430 3.381590 GTGCTTTCTTCCCAAGTTCAAGT 59.618 43.478 0.00 0.00 0.00 3.16
2382 2431 3.381272 TGTGCTTTCTTCCCAAGTTCAAG 59.619 43.478 0.00 0.00 0.00 3.02
2383 2432 3.360867 TGTGCTTTCTTCCCAAGTTCAA 58.639 40.909 0.00 0.00 0.00 2.69
2384 2433 3.011566 TGTGCTTTCTTCCCAAGTTCA 57.988 42.857 0.00 0.00 0.00 3.18
2385 2434 4.590850 AATGTGCTTTCTTCCCAAGTTC 57.409 40.909 0.00 0.00 0.00 3.01
2386 2435 5.118286 CAAAATGTGCTTTCTTCCCAAGTT 58.882 37.500 0.00 0.00 0.00 2.66
2387 2436 4.443315 CCAAAATGTGCTTTCTTCCCAAGT 60.443 41.667 0.00 0.00 0.00 3.16
2388 2437 4.060205 CCAAAATGTGCTTTCTTCCCAAG 58.940 43.478 0.00 0.00 0.00 3.61
2389 2438 3.454082 ACCAAAATGTGCTTTCTTCCCAA 59.546 39.130 0.00 0.00 0.00 4.12
2390 2439 3.037549 ACCAAAATGTGCTTTCTTCCCA 58.962 40.909 0.00 0.00 0.00 4.37
2391 2440 3.069443 TGACCAAAATGTGCTTTCTTCCC 59.931 43.478 0.00 0.00 0.00 3.97
2392 2441 4.051237 GTGACCAAAATGTGCTTTCTTCC 58.949 43.478 0.00 0.00 0.00 3.46
2393 2442 4.741676 CAGTGACCAAAATGTGCTTTCTTC 59.258 41.667 0.00 0.00 0.00 2.87
2394 2443 4.160252 ACAGTGACCAAAATGTGCTTTCTT 59.840 37.500 0.00 0.00 0.00 2.52
2395 2444 3.701040 ACAGTGACCAAAATGTGCTTTCT 59.299 39.130 0.00 0.00 0.00 2.52
2396 2445 4.045636 ACAGTGACCAAAATGTGCTTTC 57.954 40.909 0.00 0.00 0.00 2.62
2397 2446 4.644685 AGTACAGTGACCAAAATGTGCTTT 59.355 37.500 0.00 0.00 35.46 3.51
2398 2447 4.207165 AGTACAGTGACCAAAATGTGCTT 58.793 39.130 0.00 0.00 35.46 3.91
2399 2448 3.820557 AGTACAGTGACCAAAATGTGCT 58.179 40.909 0.00 0.00 34.38 4.40
2400 2449 4.568152 AAGTACAGTGACCAAAATGTGC 57.432 40.909 0.00 0.00 0.00 4.57
2401 2450 8.918961 TTTTAAAGTACAGTGACCAAAATGTG 57.081 30.769 0.00 0.00 0.00 3.21
2404 2453 9.887406 CGTATTTTAAAGTACAGTGACCAAAAT 57.113 29.630 17.78 6.40 0.00 1.82
2405 2454 9.107177 TCGTATTTTAAAGTACAGTGACCAAAA 57.893 29.630 17.78 0.00 0.00 2.44
2406 2455 8.550376 GTCGTATTTTAAAGTACAGTGACCAAA 58.450 33.333 17.78 0.00 0.00 3.28
2407 2456 7.171337 GGTCGTATTTTAAAGTACAGTGACCAA 59.829 37.037 24.99 0.00 0.00 3.67
2408 2457 6.646240 GGTCGTATTTTAAAGTACAGTGACCA 59.354 38.462 24.99 5.19 0.00 4.02
2409 2458 6.646240 TGGTCGTATTTTAAAGTACAGTGACC 59.354 38.462 24.11 24.11 0.00 4.02
2410 2459 7.642071 TGGTCGTATTTTAAAGTACAGTGAC 57.358 36.000 17.78 15.63 0.00 3.67
2411 2460 8.836268 ATTGGTCGTATTTTAAAGTACAGTGA 57.164 30.769 17.78 7.10 0.00 3.41
2412 2461 9.962759 GTATTGGTCGTATTTTAAAGTACAGTG 57.037 33.333 17.78 5.23 0.00 3.66
2413 2462 8.863049 CGTATTGGTCGTATTTTAAAGTACAGT 58.137 33.333 17.78 2.03 0.00 3.55
2414 2463 8.323140 CCGTATTGGTCGTATTTTAAAGTACAG 58.677 37.037 17.78 11.74 0.00 2.74
2415 2464 8.183830 CCGTATTGGTCGTATTTTAAAGTACA 57.816 34.615 17.78 5.64 0.00 2.90
2432 2481 2.538449 GCGTATTGAGTGACCGTATTGG 59.462 50.000 0.00 0.00 46.41 3.16
2433 2482 2.538449 GGCGTATTGAGTGACCGTATTG 59.462 50.000 0.00 0.00 0.00 1.90
2434 2483 2.429610 AGGCGTATTGAGTGACCGTATT 59.570 45.455 0.00 0.00 0.00 1.89
2435 2484 2.029623 AGGCGTATTGAGTGACCGTAT 58.970 47.619 0.00 0.00 0.00 3.06
2436 2485 1.133598 CAGGCGTATTGAGTGACCGTA 59.866 52.381 0.00 0.00 0.00 4.02
2437 2486 0.108804 CAGGCGTATTGAGTGACCGT 60.109 55.000 0.00 0.00 0.00 4.83
2438 2487 1.421410 GCAGGCGTATTGAGTGACCG 61.421 60.000 0.00 0.00 0.00 4.79
2439 2488 0.391130 TGCAGGCGTATTGAGTGACC 60.391 55.000 0.00 0.00 0.00 4.02
2440 2489 0.721718 GTGCAGGCGTATTGAGTGAC 59.278 55.000 0.00 0.00 0.00 3.67
2441 2490 0.735978 CGTGCAGGCGTATTGAGTGA 60.736 55.000 0.00 0.00 0.00 3.41
2442 2491 1.014044 ACGTGCAGGCGTATTGAGTG 61.014 55.000 6.26 0.00 43.83 3.51
2443 2492 1.014044 CACGTGCAGGCGTATTGAGT 61.014 55.000 0.82 0.00 43.83 3.41
2444 2493 0.735978 TCACGTGCAGGCGTATTGAG 60.736 55.000 11.67 0.00 43.83 3.02
2445 2494 0.108377 ATCACGTGCAGGCGTATTGA 60.108 50.000 11.67 2.66 43.83 2.57
2446 2495 0.726827 AATCACGTGCAGGCGTATTG 59.273 50.000 11.67 0.00 43.83 1.90
2447 2496 0.726827 CAATCACGTGCAGGCGTATT 59.273 50.000 11.67 0.15 43.83 1.89
2448 2497 0.391130 ACAATCACGTGCAGGCGTAT 60.391 50.000 11.67 0.00 43.83 3.06
2449 2498 0.244178 TACAATCACGTGCAGGCGTA 59.756 50.000 11.67 4.97 43.83 4.42
2450 2499 1.005512 TACAATCACGTGCAGGCGT 60.006 52.632 11.67 0.60 46.88 5.68
2451 2500 1.419922 GTACAATCACGTGCAGGCG 59.580 57.895 11.67 0.00 37.94 5.52
2452 2501 1.419922 CGTACAATCACGTGCAGGC 59.580 57.895 11.67 0.00 37.16 4.85
2453 2502 0.669318 ACCGTACAATCACGTGCAGG 60.669 55.000 11.67 4.53 40.31 4.85
2454 2503 0.713883 GACCGTACAATCACGTGCAG 59.286 55.000 11.67 5.40 40.31 4.41
2455 2504 0.032267 TGACCGTACAATCACGTGCA 59.968 50.000 11.67 0.00 40.31 4.57
2456 2505 0.437295 GTGACCGTACAATCACGTGC 59.563 55.000 11.67 0.00 40.31 5.34
2460 2509 3.183775 GTGAACAGTGACCGTACAATCAC 59.816 47.826 15.50 15.50 44.64 3.06
2461 2510 3.386486 GTGAACAGTGACCGTACAATCA 58.614 45.455 0.00 0.00 0.00 2.57
2462 2511 2.735134 GGTGAACAGTGACCGTACAATC 59.265 50.000 0.00 0.00 0.00 2.67
2463 2512 2.762745 GGTGAACAGTGACCGTACAAT 58.237 47.619 0.00 0.00 0.00 2.71
2464 2513 2.228138 GGTGAACAGTGACCGTACAA 57.772 50.000 0.00 0.00 0.00 2.41
2465 2514 3.972107 GGTGAACAGTGACCGTACA 57.028 52.632 0.00 0.00 0.00 2.90
2470 2519 1.280206 GCGTACGGTGAACAGTGACC 61.280 60.000 18.39 0.00 0.00 4.02
2471 2520 1.280206 GGCGTACGGTGAACAGTGAC 61.280 60.000 18.39 0.00 0.00 3.67
2472 2521 1.007038 GGCGTACGGTGAACAGTGA 60.007 57.895 18.39 0.00 0.00 3.41
2473 2522 1.300311 TGGCGTACGGTGAACAGTG 60.300 57.895 18.39 0.00 0.00 3.66
2474 2523 1.300388 GTGGCGTACGGTGAACAGT 60.300 57.895 18.39 0.00 0.00 3.55
2475 2524 0.599204 AAGTGGCGTACGGTGAACAG 60.599 55.000 18.39 0.00 0.00 3.16
2476 2525 0.876777 CAAGTGGCGTACGGTGAACA 60.877 55.000 18.39 0.00 0.00 3.18
2477 2526 0.877213 ACAAGTGGCGTACGGTGAAC 60.877 55.000 18.39 0.00 0.00 3.18
2478 2527 0.598158 GACAAGTGGCGTACGGTGAA 60.598 55.000 18.39 0.00 0.00 3.18
2479 2528 1.007038 GACAAGTGGCGTACGGTGA 60.007 57.895 18.39 0.00 0.00 4.02
2480 2529 2.369629 CGACAAGTGGCGTACGGTG 61.370 63.158 18.39 0.00 42.66 4.94
2481 2530 2.049802 CGACAAGTGGCGTACGGT 60.050 61.111 18.39 4.73 42.66 4.83
2489 2538 3.958147 ATGGAGCGGCGACAAGTGG 62.958 63.158 12.98 0.00 0.00 4.00
2490 2539 1.577328 AAATGGAGCGGCGACAAGTG 61.577 55.000 12.98 0.00 0.00 3.16
2491 2540 1.302511 AAATGGAGCGGCGACAAGT 60.303 52.632 12.98 0.00 0.00 3.16
2492 2541 1.135315 CAAATGGAGCGGCGACAAG 59.865 57.895 12.98 0.00 0.00 3.16
2493 2542 1.302112 TCAAATGGAGCGGCGACAA 60.302 52.632 12.98 0.00 0.00 3.18
2494 2543 2.032634 GTCAAATGGAGCGGCGACA 61.033 57.895 12.98 6.43 0.00 4.35
2495 2544 2.750888 GGTCAAATGGAGCGGCGAC 61.751 63.158 12.98 3.05 33.78 5.19
2496 2545 2.435938 GGTCAAATGGAGCGGCGA 60.436 61.111 12.98 0.00 33.78 5.54
2501 2550 2.622942 TCAACAAGTGGTCAAATGGAGC 59.377 45.455 0.00 0.00 44.35 4.70
2502 2551 3.004734 GGTCAACAAGTGGTCAAATGGAG 59.995 47.826 0.00 0.00 0.00 3.86
2503 2552 2.955660 GGTCAACAAGTGGTCAAATGGA 59.044 45.455 0.00 0.00 0.00 3.41
2504 2553 2.692557 TGGTCAACAAGTGGTCAAATGG 59.307 45.455 0.00 0.00 0.00 3.16
2505 2554 4.383850 TTGGTCAACAAGTGGTCAAATG 57.616 40.909 0.00 0.00 33.18 2.32
2506 2555 4.039124 GGATTGGTCAACAAGTGGTCAAAT 59.961 41.667 0.00 0.00 43.48 2.32
2507 2556 3.383185 GGATTGGTCAACAAGTGGTCAAA 59.617 43.478 0.00 0.00 43.48 2.69
2508 2557 2.955660 GGATTGGTCAACAAGTGGTCAA 59.044 45.455 0.00 0.00 43.48 3.18
2509 2558 2.582052 GGATTGGTCAACAAGTGGTCA 58.418 47.619 0.00 0.00 43.48 4.02
2510 2559 1.535462 CGGATTGGTCAACAAGTGGTC 59.465 52.381 0.00 0.00 43.48 4.02
2511 2560 1.142060 TCGGATTGGTCAACAAGTGGT 59.858 47.619 0.00 0.00 43.48 4.16
2512 2561 1.806542 CTCGGATTGGTCAACAAGTGG 59.193 52.381 0.00 0.00 43.48 4.00
2513 2562 1.806542 CCTCGGATTGGTCAACAAGTG 59.193 52.381 0.00 0.00 43.48 3.16
2514 2563 1.882352 GCCTCGGATTGGTCAACAAGT 60.882 52.381 0.00 0.00 43.48 3.16
2515 2564 0.804989 GCCTCGGATTGGTCAACAAG 59.195 55.000 0.00 0.00 43.48 3.16
2516 2565 0.953471 CGCCTCGGATTGGTCAACAA 60.953 55.000 0.00 0.00 44.54 2.83
2517 2566 1.375396 CGCCTCGGATTGGTCAACA 60.375 57.895 0.00 0.00 0.00 3.33
2518 2567 1.079405 TCGCCTCGGATTGGTCAAC 60.079 57.895 0.00 0.00 0.00 3.18
2519 2568 1.079405 GTCGCCTCGGATTGGTCAA 60.079 57.895 0.00 0.00 0.00 3.18
2520 2569 2.225791 CTGTCGCCTCGGATTGGTCA 62.226 60.000 0.00 0.00 0.00 4.02
2521 2570 1.519455 CTGTCGCCTCGGATTGGTC 60.519 63.158 0.00 0.00 0.00 4.02
2522 2571 2.579201 CTGTCGCCTCGGATTGGT 59.421 61.111 0.00 0.00 0.00 3.67
2523 2572 2.892425 GCTGTCGCCTCGGATTGG 60.892 66.667 0.00 0.00 0.00 3.16
2524 2573 2.169789 CAGCTGTCGCCTCGGATTG 61.170 63.158 5.25 0.00 36.60 2.67
2525 2574 2.185350 CAGCTGTCGCCTCGGATT 59.815 61.111 5.25 0.00 36.60 3.01
2526 2575 3.842923 CCAGCTGTCGCCTCGGAT 61.843 66.667 13.81 0.00 36.60 4.18
2531 2580 4.626081 AAACGCCAGCTGTCGCCT 62.626 61.111 18.32 1.19 36.60 5.52
2532 2581 4.389576 CAAACGCCAGCTGTCGCC 62.390 66.667 18.32 0.00 36.60 5.54
2534 2583 4.724697 CGCAAACGCCAGCTGTCG 62.725 66.667 16.70 16.70 0.00 4.35
2535 2584 4.389576 CCGCAAACGCCAGCTGTC 62.390 66.667 13.81 0.00 38.22 3.51
2540 2589 2.636778 AAAAACCCCGCAAACGCCAG 62.637 55.000 0.00 0.00 38.22 4.85
2541 2590 2.722201 AAAAACCCCGCAAACGCCA 61.722 52.632 0.00 0.00 38.22 5.69
2542 2591 2.107343 AAAAACCCCGCAAACGCC 59.893 55.556 0.00 0.00 38.22 5.68
2558 2607 6.670233 CGCCGGGCTAATTTACATATAAAAA 58.330 36.000 18.34 0.00 33.98 1.94
2559 2608 5.335035 GCGCCGGGCTAATTTACATATAAAA 60.335 40.000 18.34 0.00 39.11 1.52
2560 2609 4.154556 GCGCCGGGCTAATTTACATATAAA 59.845 41.667 18.34 0.00 39.11 1.40
2561 2610 3.685756 GCGCCGGGCTAATTTACATATAA 59.314 43.478 18.34 0.00 39.11 0.98
2562 2611 3.264104 GCGCCGGGCTAATTTACATATA 58.736 45.455 18.34 0.00 39.11 0.86
2563 2612 2.081462 GCGCCGGGCTAATTTACATAT 58.919 47.619 18.34 0.00 39.11 1.78
2564 2613 1.202663 TGCGCCGGGCTAATTTACATA 60.203 47.619 18.34 0.00 44.05 2.29
2565 2614 0.464735 TGCGCCGGGCTAATTTACAT 60.465 50.000 18.34 0.00 44.05 2.29
2566 2615 0.464735 ATGCGCCGGGCTAATTTACA 60.465 50.000 18.34 4.11 44.05 2.41
2567 2616 0.237498 GATGCGCCGGGCTAATTTAC 59.763 55.000 18.34 0.00 44.05 2.01
2568 2617 0.107831 AGATGCGCCGGGCTAATTTA 59.892 50.000 18.34 0.00 44.05 1.40
2569 2618 0.107831 TAGATGCGCCGGGCTAATTT 59.892 50.000 18.34 8.11 44.05 1.82
2570 2619 0.107831 TTAGATGCGCCGGGCTAATT 59.892 50.000 18.34 0.00 44.05 1.40
2571 2620 0.324943 ATTAGATGCGCCGGGCTAAT 59.675 50.000 18.34 10.72 44.05 1.73
2572 2621 0.107831 AATTAGATGCGCCGGGCTAA 59.892 50.000 18.34 8.74 44.05 3.09
2573 2622 0.107831 AAATTAGATGCGCCGGGCTA 59.892 50.000 18.34 6.36 44.05 3.93
2574 2623 1.152963 AAATTAGATGCGCCGGGCT 60.153 52.632 18.34 0.00 44.05 5.19
2575 2624 1.282875 GAAATTAGATGCGCCGGGC 59.717 57.895 9.54 9.54 43.96 6.13
2576 2625 1.197721 GATGAAATTAGATGCGCCGGG 59.802 52.381 4.18 0.00 0.00 5.73
2577 2626 1.197721 GGATGAAATTAGATGCGCCGG 59.802 52.381 4.18 0.00 0.00 6.13
2578 2627 1.872952 TGGATGAAATTAGATGCGCCG 59.127 47.619 4.18 0.00 0.00 6.46
2579 2628 2.030805 GGTGGATGAAATTAGATGCGCC 60.031 50.000 4.18 5.35 34.03 6.53
2580 2629 2.618241 TGGTGGATGAAATTAGATGCGC 59.382 45.455 0.00 0.00 0.00 6.09
2581 2630 3.003689 GGTGGTGGATGAAATTAGATGCG 59.996 47.826 0.00 0.00 0.00 4.73
2582 2631 3.319122 GGGTGGTGGATGAAATTAGATGC 59.681 47.826 0.00 0.00 0.00 3.91
2583 2632 4.581824 CAGGGTGGTGGATGAAATTAGATG 59.418 45.833 0.00 0.00 0.00 2.90
2584 2633 4.478317 TCAGGGTGGTGGATGAAATTAGAT 59.522 41.667 0.00 0.00 0.00 1.98
2585 2634 3.849574 TCAGGGTGGTGGATGAAATTAGA 59.150 43.478 0.00 0.00 0.00 2.10
2586 2635 4.235079 TCAGGGTGGTGGATGAAATTAG 57.765 45.455 0.00 0.00 0.00 1.73
2587 2636 4.666412 TTCAGGGTGGTGGATGAAATTA 57.334 40.909 0.00 0.00 0.00 1.40
2588 2637 3.541242 TTCAGGGTGGTGGATGAAATT 57.459 42.857 0.00 0.00 0.00 1.82
2589 2638 3.541242 TTTCAGGGTGGTGGATGAAAT 57.459 42.857 0.00 0.00 36.89 2.17
2590 2639 3.541242 ATTTCAGGGTGGTGGATGAAA 57.459 42.857 2.10 2.10 43.54 2.69
2591 2640 4.229353 TGATATTTCAGGGTGGTGGATGAA 59.771 41.667 0.00 0.00 0.00 2.57
2592 2641 3.785325 TGATATTTCAGGGTGGTGGATGA 59.215 43.478 0.00 0.00 0.00 2.92
2593 2642 4.139786 CTGATATTTCAGGGTGGTGGATG 58.860 47.826 5.33 0.00 44.78 3.51
2594 2643 4.443978 CTGATATTTCAGGGTGGTGGAT 57.556 45.455 5.33 0.00 44.78 3.41
2595 2644 3.931907 CTGATATTTCAGGGTGGTGGA 57.068 47.619 5.33 0.00 44.78 4.02
2605 2654 3.136443 AGGGATTCGGCACTGATATTTCA 59.864 43.478 0.00 0.00 0.00 2.69
2606 2655 3.744660 AGGGATTCGGCACTGATATTTC 58.255 45.455 0.00 0.00 0.00 2.17
2607 2656 3.864789 AGGGATTCGGCACTGATATTT 57.135 42.857 0.00 0.00 0.00 1.40
2608 2657 4.974645 TTAGGGATTCGGCACTGATATT 57.025 40.909 0.00 0.00 0.00 1.28
2609 2658 5.491982 GAATTAGGGATTCGGCACTGATAT 58.508 41.667 0.00 0.00 35.21 1.63
2610 2659 4.262894 GGAATTAGGGATTCGGCACTGATA 60.263 45.833 0.00 0.00 44.21 2.15
2611 2660 3.496870 GGAATTAGGGATTCGGCACTGAT 60.497 47.826 0.00 0.00 44.21 2.90
2612 2661 2.158813 GGAATTAGGGATTCGGCACTGA 60.159 50.000 0.00 0.00 44.21 3.41
2613 2662 2.222027 GGAATTAGGGATTCGGCACTG 58.778 52.381 0.00 0.00 44.21 3.66
2614 2663 1.143073 GGGAATTAGGGATTCGGCACT 59.857 52.381 0.00 0.00 44.21 4.40
2615 2664 1.605753 GGGAATTAGGGATTCGGCAC 58.394 55.000 0.00 0.00 44.21 5.01
2616 2665 0.476771 GGGGAATTAGGGATTCGGCA 59.523 55.000 0.00 0.00 44.21 5.69
2617 2666 0.476771 TGGGGAATTAGGGATTCGGC 59.523 55.000 0.00 0.00 44.21 5.54
2618 2667 1.774856 AGTGGGGAATTAGGGATTCGG 59.225 52.381 0.00 0.00 44.21 4.30
2619 2668 2.224548 GGAGTGGGGAATTAGGGATTCG 60.225 54.545 0.00 0.00 44.21 3.34
2620 2669 2.108425 GGGAGTGGGGAATTAGGGATTC 59.892 54.545 0.00 0.00 42.84 2.52
2621 2670 2.144450 GGGAGTGGGGAATTAGGGATT 58.856 52.381 0.00 0.00 0.00 3.01
2622 2671 1.301511 AGGGAGTGGGGAATTAGGGAT 59.698 52.381 0.00 0.00 0.00 3.85
2623 2672 0.728843 AGGGAGTGGGGAATTAGGGA 59.271 55.000 0.00 0.00 0.00 4.20
2624 2673 1.141185 GAGGGAGTGGGGAATTAGGG 58.859 60.000 0.00 0.00 0.00 3.53
2625 2674 1.141185 GGAGGGAGTGGGGAATTAGG 58.859 60.000 0.00 0.00 0.00 2.69
2626 2675 1.141185 GGGAGGGAGTGGGGAATTAG 58.859 60.000 0.00 0.00 0.00 1.73
2627 2676 0.328158 GGGGAGGGAGTGGGGAATTA 60.328 60.000 0.00 0.00 0.00 1.40
2628 2677 1.622752 GGGGAGGGAGTGGGGAATT 60.623 63.158 0.00 0.00 0.00 2.17
2629 2678 2.044620 GGGGAGGGAGTGGGGAAT 59.955 66.667 0.00 0.00 0.00 3.01
2630 2679 4.364686 GGGGGAGGGAGTGGGGAA 62.365 72.222 0.00 0.00 0.00 3.97
2633 2682 3.891432 AACAGGGGGAGGGAGTGGG 62.891 68.421 0.00 0.00 0.00 4.61
2634 2683 2.204151 AACAGGGGGAGGGAGTGG 60.204 66.667 0.00 0.00 0.00 4.00
2635 2684 3.081554 CAACAGGGGGAGGGAGTG 58.918 66.667 0.00 0.00 0.00 3.51
2636 2685 2.936032 GCAACAGGGGGAGGGAGT 60.936 66.667 0.00 0.00 0.00 3.85
2637 2686 1.793820 AAAGCAACAGGGGGAGGGAG 61.794 60.000 0.00 0.00 0.00 4.30
2638 2687 1.778383 AAAGCAACAGGGGGAGGGA 60.778 57.895 0.00 0.00 0.00 4.20
2639 2688 1.607467 CAAAGCAACAGGGGGAGGG 60.607 63.158 0.00 0.00 0.00 4.30
2640 2689 2.278330 GCAAAGCAACAGGGGGAGG 61.278 63.158 0.00 0.00 0.00 4.30
2641 2690 2.629656 CGCAAAGCAACAGGGGGAG 61.630 63.158 0.00 0.00 0.00 4.30
2642 2691 2.597217 CGCAAAGCAACAGGGGGA 60.597 61.111 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.