Multiple sequence alignment - TraesCS6D01G140600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G140600 chr6D 100.000 1041 0 0 1695 2735 110160312 110159272 0.000000e+00 1923.0
1 TraesCS6D01G140600 chr6D 100.000 787 0 0 790 1576 110161217 110160431 0.000000e+00 1454.0
2 TraesCS6D01G140600 chr6D 100.000 655 0 0 1 655 110162006 110161352 0.000000e+00 1210.0
3 TraesCS6D01G140600 chr6A 91.581 1069 61 8 1695 2735 134551868 134550801 0.000000e+00 1448.0
4 TraesCS6D01G140600 chr6A 92.563 632 23 9 953 1576 134552532 134551917 0.000000e+00 885.0
5 TraesCS6D01G140600 chr6B 95.215 627 16 8 953 1576 198921211 198920596 0.000000e+00 979.0
6 TraesCS6D01G140600 chr6B 89.170 554 45 6 3 541 198935559 198935006 0.000000e+00 676.0
7 TraesCS6D01G140600 chr1A 82.779 331 30 18 1227 1552 11025895 11025587 1.250000e-68 270.0
8 TraesCS6D01G140600 chr1A 81.790 324 37 16 1232 1552 531839860 531839556 4.520000e-63 252.0
9 TraesCS6D01G140600 chr7D 82.090 335 40 14 1218 1552 596674658 596674972 4.490000e-68 268.0
10 TraesCS6D01G140600 chr2A 81.845 336 41 12 1218 1552 23796363 23796679 5.810000e-67 265.0
11 TraesCS6D01G140600 chr7A 81.375 349 37 21 1210 1552 689905329 689905655 2.700000e-65 259.0
12 TraesCS6D01G140600 chr7A 81.009 337 42 17 1218 1552 707844570 707844886 5.850000e-62 248.0
13 TraesCS6D01G140600 chr1B 82.540 315 35 16 1240 1552 658503933 658503637 2.700000e-65 259.0
14 TraesCS6D01G140600 chr7B 81.306 337 41 17 1218 1552 544973198 544973514 1.260000e-63 254.0
15 TraesCS6D01G140600 chr7B 81.707 328 35 18 1231 1552 675148547 675148855 1.630000e-62 250.0
16 TraesCS6D01G140600 chr3B 81.707 328 38 15 1227 1552 59100221 59100528 1.260000e-63 254.0
17 TraesCS6D01G140600 chr2B 81.270 315 39 13 1240 1552 811163 810867 1.270000e-58 237.0
18 TraesCS6D01G140600 chr1D 81.373 102 16 3 2117 2217 447511153 447511252 2.260000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G140600 chr6D 110159272 110162006 2734 True 1529.0 1923 100.000 1 2735 3 chr6D.!!$R1 2734
1 TraesCS6D01G140600 chr6A 134550801 134552532 1731 True 1166.5 1448 92.072 953 2735 2 chr6A.!!$R1 1782
2 TraesCS6D01G140600 chr6B 198920596 198921211 615 True 979.0 979 95.215 953 1576 1 chr6B.!!$R1 623
3 TraesCS6D01G140600 chr6B 198935006 198935559 553 True 676.0 676 89.170 3 541 1 chr6B.!!$R2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 590 0.03582 TTCTCACCGGTATTGCACCC 60.036 55.0 6.87 0.0 45.52 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 1779 0.911769 TGCCATACCACAAGGGAGAG 59.088 55.0 0.0 0.0 41.15 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.007716 AGTCACGTGTAATTTTATTCAAACTCG 58.992 33.333 16.51 0.00 0.00 4.18
27 28 7.267600 GTCACGTGTAATTTTATTCAAACTCGG 59.732 37.037 16.51 0.00 0.00 4.63
42 43 1.841277 ACTCGGCAACCATTATGGGTA 59.159 47.619 16.35 0.00 43.37 3.69
45 46 1.946768 CGGCAACCATTATGGGTACAG 59.053 52.381 16.35 0.18 43.37 2.74
59 63 3.202818 TGGGTACAGATGCTTTGGATCAT 59.797 43.478 0.00 0.00 0.00 2.45
69 73 4.671831 TGCTTTGGATCATAGACCCAAAA 58.328 39.130 6.99 0.00 45.81 2.44
70 74 5.083122 TGCTTTGGATCATAGACCCAAAAA 58.917 37.500 6.99 0.00 45.81 1.94
140 145 4.211125 TGGCTTTATTCTTTGTGGTGACA 58.789 39.130 0.00 0.00 38.70 3.58
189 194 3.119495 GGCTTCAACAAAGATAATGCGGT 60.119 43.478 0.00 0.00 37.12 5.68
190 195 4.485163 GCTTCAACAAAGATAATGCGGTT 58.515 39.130 0.00 0.00 37.12 4.44
200 205 5.599999 AGATAATGCGGTTAGTCTGAAGT 57.400 39.130 0.00 0.00 0.00 3.01
201 206 5.593010 AGATAATGCGGTTAGTCTGAAGTC 58.407 41.667 0.00 0.00 0.00 3.01
202 207 2.279582 ATGCGGTTAGTCTGAAGTCG 57.720 50.000 0.00 0.00 0.00 4.18
203 208 0.956633 TGCGGTTAGTCTGAAGTCGT 59.043 50.000 0.00 0.00 0.00 4.34
204 209 1.335597 TGCGGTTAGTCTGAAGTCGTG 60.336 52.381 0.00 0.00 0.00 4.35
209 214 1.617322 TAGTCTGAAGTCGTGGCACT 58.383 50.000 16.72 0.00 0.00 4.40
229 234 2.233676 CTGCCATCCGTATACCTGCATA 59.766 50.000 0.00 0.00 0.00 3.14
235 240 6.460781 CCATCCGTATACCTGCATAAACTTA 58.539 40.000 0.00 0.00 0.00 2.24
286 291 3.055385 TGAGCTGCCCTACGTCTAAAAAT 60.055 43.478 0.00 0.00 0.00 1.82
312 317 2.396590 AGTTGTGAGTGTGGAACGTT 57.603 45.000 0.00 0.00 42.39 3.99
327 332 2.874664 CGTTCTTGGTCCGGGGACA 61.875 63.158 18.89 3.40 46.20 4.02
329 334 0.887836 GTTCTTGGTCCGGGGACAAC 60.888 60.000 18.89 10.77 46.20 3.32
360 365 2.138596 TAGGTCGTCGAACCACAAAC 57.861 50.000 6.68 0.00 42.12 2.93
389 394 3.624861 CCAAGATGTCAGATAAGCACACC 59.375 47.826 0.00 0.00 0.00 4.16
394 399 3.146066 TGTCAGATAAGCACACCAAACC 58.854 45.455 0.00 0.00 0.00 3.27
408 413 5.003804 ACACCAAACCACAAGAGATCATAC 58.996 41.667 0.00 0.00 0.00 2.39
417 422 7.651808 ACCACAAGAGATCATACAAACAAAAG 58.348 34.615 0.00 0.00 0.00 2.27
420 425 7.325338 CACAAGAGATCATACAAACAAAAGCAG 59.675 37.037 0.00 0.00 0.00 4.24
422 427 5.474532 AGAGATCATACAAACAAAAGCAGCA 59.525 36.000 0.00 0.00 0.00 4.41
424 429 5.474532 AGATCATACAAACAAAAGCAGCAGA 59.525 36.000 0.00 0.00 0.00 4.26
432 437 3.278574 ACAAAAGCAGCAGACACTAACA 58.721 40.909 0.00 0.00 0.00 2.41
433 438 3.065371 ACAAAAGCAGCAGACACTAACAC 59.935 43.478 0.00 0.00 0.00 3.32
434 439 2.620251 AAGCAGCAGACACTAACACA 57.380 45.000 0.00 0.00 0.00 3.72
435 440 2.620251 AGCAGCAGACACTAACACAA 57.380 45.000 0.00 0.00 0.00 3.33
436 441 2.917933 AGCAGCAGACACTAACACAAA 58.082 42.857 0.00 0.00 0.00 2.83
437 442 3.480470 AGCAGCAGACACTAACACAAAT 58.520 40.909 0.00 0.00 0.00 2.32
438 443 3.499918 AGCAGCAGACACTAACACAAATC 59.500 43.478 0.00 0.00 0.00 2.17
439 444 3.365364 GCAGCAGACACTAACACAAATCC 60.365 47.826 0.00 0.00 0.00 3.01
440 445 3.067106 AGCAGACACTAACACAAATCCG 58.933 45.455 0.00 0.00 0.00 4.18
441 446 2.806244 GCAGACACTAACACAAATCCGT 59.194 45.455 0.00 0.00 0.00 4.69
442 447 3.363970 GCAGACACTAACACAAATCCGTG 60.364 47.826 0.00 0.00 42.81 4.94
450 455 2.696566 ACAAATCCGTGTGAACGCA 58.303 47.368 0.00 0.00 0.00 5.24
451 456 1.234821 ACAAATCCGTGTGAACGCAT 58.765 45.000 0.00 0.00 0.00 4.73
452 457 1.196808 ACAAATCCGTGTGAACGCATC 59.803 47.619 0.00 0.00 0.00 3.91
453 458 1.464608 CAAATCCGTGTGAACGCATCT 59.535 47.619 0.00 0.00 0.00 2.90
454 459 1.078709 AATCCGTGTGAACGCATCTG 58.921 50.000 0.00 0.00 0.00 2.90
455 460 1.361668 ATCCGTGTGAACGCATCTGC 61.362 55.000 0.00 0.00 37.78 4.26
469 474 4.139183 GCATCTGCGAAGACATAAATCC 57.861 45.455 0.00 0.00 0.00 3.01
470 475 3.561310 GCATCTGCGAAGACATAAATCCA 59.439 43.478 0.00 0.00 0.00 3.41
471 476 4.035558 GCATCTGCGAAGACATAAATCCAA 59.964 41.667 0.00 0.00 0.00 3.53
472 477 5.505286 CATCTGCGAAGACATAAATCCAAC 58.495 41.667 0.00 0.00 0.00 3.77
473 478 4.832248 TCTGCGAAGACATAAATCCAACT 58.168 39.130 0.00 0.00 0.00 3.16
474 479 5.245531 TCTGCGAAGACATAAATCCAACTT 58.754 37.500 0.00 0.00 0.00 2.66
475 480 5.351465 TCTGCGAAGACATAAATCCAACTTC 59.649 40.000 0.00 0.00 0.00 3.01
476 481 4.394920 TGCGAAGACATAAATCCAACTTCC 59.605 41.667 0.00 0.00 32.83 3.46
477 482 4.494199 GCGAAGACATAAATCCAACTTCCG 60.494 45.833 0.00 0.00 32.83 4.30
478 483 4.494199 CGAAGACATAAATCCAACTTCCGC 60.494 45.833 0.00 0.00 32.83 5.54
479 484 3.950397 AGACATAAATCCAACTTCCGCA 58.050 40.909 0.00 0.00 0.00 5.69
480 485 4.331968 AGACATAAATCCAACTTCCGCAA 58.668 39.130 0.00 0.00 0.00 4.85
481 486 4.396166 AGACATAAATCCAACTTCCGCAAG 59.604 41.667 0.00 0.00 35.50 4.01
482 487 4.331968 ACATAAATCCAACTTCCGCAAGA 58.668 39.130 0.00 0.00 43.02 3.02
483 488 4.949856 ACATAAATCCAACTTCCGCAAGAT 59.050 37.500 0.00 0.00 43.02 2.40
484 489 5.066505 ACATAAATCCAACTTCCGCAAGATC 59.933 40.000 0.00 0.00 43.02 2.75
485 490 2.787473 ATCCAACTTCCGCAAGATCA 57.213 45.000 0.00 0.00 43.02 2.92
486 491 2.099141 TCCAACTTCCGCAAGATCAG 57.901 50.000 0.00 0.00 43.02 2.90
487 492 1.623311 TCCAACTTCCGCAAGATCAGA 59.377 47.619 0.00 0.00 43.02 3.27
488 493 1.734465 CCAACTTCCGCAAGATCAGAC 59.266 52.381 0.00 0.00 43.02 3.51
489 494 1.734465 CAACTTCCGCAAGATCAGACC 59.266 52.381 0.00 0.00 43.02 3.85
490 495 1.270907 ACTTCCGCAAGATCAGACCT 58.729 50.000 0.00 0.00 43.02 3.85
491 496 1.066573 ACTTCCGCAAGATCAGACCTG 60.067 52.381 0.00 0.00 43.02 4.00
492 497 0.391661 TTCCGCAAGATCAGACCTGC 60.392 55.000 0.00 0.00 43.02 4.85
493 498 2.169789 CCGCAAGATCAGACCTGCG 61.170 63.158 13.28 13.28 44.10 5.18
494 499 1.446792 CGCAAGATCAGACCTGCGT 60.447 57.895 12.39 0.00 40.33 5.24
495 500 0.179137 CGCAAGATCAGACCTGCGTA 60.179 55.000 12.39 0.00 40.33 4.42
496 501 1.565305 GCAAGATCAGACCTGCGTAG 58.435 55.000 0.00 0.00 0.00 3.51
509 514 3.791973 CTGCGTAGGAAAGACATCTCT 57.208 47.619 0.00 0.00 0.00 3.10
510 515 4.902443 CTGCGTAGGAAAGACATCTCTA 57.098 45.455 0.00 0.00 0.00 2.43
511 516 4.854399 CTGCGTAGGAAAGACATCTCTAG 58.146 47.826 0.00 0.00 0.00 2.43
512 517 3.066900 TGCGTAGGAAAGACATCTCTAGC 59.933 47.826 0.00 0.00 0.00 3.42
513 518 3.316868 GCGTAGGAAAGACATCTCTAGCT 59.683 47.826 0.00 0.00 0.00 3.32
514 519 4.791411 GCGTAGGAAAGACATCTCTAGCTG 60.791 50.000 0.00 0.00 0.00 4.24
515 520 4.336993 CGTAGGAAAGACATCTCTAGCTGT 59.663 45.833 0.00 0.00 0.00 4.40
516 521 4.734398 AGGAAAGACATCTCTAGCTGTG 57.266 45.455 0.00 0.00 0.00 3.66
517 522 4.348486 AGGAAAGACATCTCTAGCTGTGA 58.652 43.478 0.00 0.00 0.00 3.58
518 523 4.961730 AGGAAAGACATCTCTAGCTGTGAT 59.038 41.667 0.00 0.00 0.00 3.06
519 524 6.132658 AGGAAAGACATCTCTAGCTGTGATA 58.867 40.000 0.00 0.00 0.00 2.15
520 525 6.040391 AGGAAAGACATCTCTAGCTGTGATAC 59.960 42.308 0.00 0.00 0.00 2.24
521 526 6.040391 GGAAAGACATCTCTAGCTGTGATACT 59.960 42.308 0.00 0.00 0.00 2.12
522 527 7.229707 GGAAAGACATCTCTAGCTGTGATACTA 59.770 40.741 0.00 0.00 0.00 1.82
523 528 7.504924 AAGACATCTCTAGCTGTGATACTAC 57.495 40.000 0.00 0.00 0.00 2.73
524 529 6.001460 AGACATCTCTAGCTGTGATACTACC 58.999 44.000 0.00 0.00 0.00 3.18
525 530 5.947663 ACATCTCTAGCTGTGATACTACCT 58.052 41.667 0.00 0.00 0.00 3.08
526 531 5.767665 ACATCTCTAGCTGTGATACTACCTG 59.232 44.000 0.00 0.00 0.00 4.00
527 532 5.632034 TCTCTAGCTGTGATACTACCTGA 57.368 43.478 0.00 0.00 0.00 3.86
528 533 6.194285 TCTCTAGCTGTGATACTACCTGAT 57.806 41.667 0.00 0.00 0.00 2.90
529 534 7.317722 TCTCTAGCTGTGATACTACCTGATA 57.682 40.000 0.00 0.00 0.00 2.15
530 535 7.746703 TCTCTAGCTGTGATACTACCTGATAA 58.253 38.462 0.00 0.00 0.00 1.75
531 536 7.880713 TCTCTAGCTGTGATACTACCTGATAAG 59.119 40.741 0.00 0.00 0.00 1.73
532 537 6.943146 TCTAGCTGTGATACTACCTGATAAGG 59.057 42.308 0.00 0.00 0.00 2.69
533 538 4.282195 AGCTGTGATACTACCTGATAAGGC 59.718 45.833 0.00 0.00 0.00 4.35
534 539 4.039245 GCTGTGATACTACCTGATAAGGCA 59.961 45.833 0.00 0.00 0.00 4.75
535 540 5.279708 GCTGTGATACTACCTGATAAGGCAT 60.280 44.000 0.00 0.00 0.00 4.40
536 541 6.346477 TGTGATACTACCTGATAAGGCATC 57.654 41.667 0.00 0.00 0.00 3.91
537 542 5.838521 TGTGATACTACCTGATAAGGCATCA 59.161 40.000 0.00 0.00 41.52 3.07
538 543 6.498303 TGTGATACTACCTGATAAGGCATCAT 59.502 38.462 0.00 0.00 42.82 2.45
539 544 7.038659 GTGATACTACCTGATAAGGCATCATC 58.961 42.308 0.00 0.00 42.82 2.92
540 545 6.725834 TGATACTACCTGATAAGGCATCATCA 59.274 38.462 0.00 0.00 42.82 3.07
541 546 5.220710 ACTACCTGATAAGGCATCATCAC 57.779 43.478 0.00 0.00 42.82 3.06
542 547 4.655649 ACTACCTGATAAGGCATCATCACA 59.344 41.667 0.00 0.00 42.82 3.58
543 548 4.508551 ACCTGATAAGGCATCATCACAA 57.491 40.909 0.00 0.00 42.82 3.33
544 549 5.057843 ACCTGATAAGGCATCATCACAAT 57.942 39.130 0.00 0.00 42.82 2.71
545 550 6.191657 ACCTGATAAGGCATCATCACAATA 57.808 37.500 0.00 0.00 42.82 1.90
546 551 6.236409 ACCTGATAAGGCATCATCACAATAG 58.764 40.000 0.00 0.00 42.82 1.73
547 552 6.043590 ACCTGATAAGGCATCATCACAATAGA 59.956 38.462 0.00 0.00 42.82 1.98
548 553 6.938596 CCTGATAAGGCATCATCACAATAGAA 59.061 38.462 0.00 0.00 42.82 2.10
549 554 7.446319 CCTGATAAGGCATCATCACAATAGAAA 59.554 37.037 0.00 0.00 42.82 2.52
550 555 8.750515 TGATAAGGCATCATCACAATAGAAAA 57.249 30.769 0.00 0.00 38.79 2.29
551 556 9.187996 TGATAAGGCATCATCACAATAGAAAAA 57.812 29.630 0.00 0.00 38.79 1.94
575 580 8.543862 AAACTAAGTAACTTTATTCTCACCGG 57.456 34.615 0.00 0.00 0.00 5.28
576 581 7.237209 ACTAAGTAACTTTATTCTCACCGGT 57.763 36.000 0.00 0.00 0.00 5.28
577 582 8.353423 ACTAAGTAACTTTATTCTCACCGGTA 57.647 34.615 6.87 0.00 0.00 4.02
578 583 8.975295 ACTAAGTAACTTTATTCTCACCGGTAT 58.025 33.333 6.87 0.00 0.00 2.73
579 584 9.813446 CTAAGTAACTTTATTCTCACCGGTATT 57.187 33.333 6.87 0.00 0.00 1.89
580 585 8.488651 AAGTAACTTTATTCTCACCGGTATTG 57.511 34.615 6.87 0.00 0.00 1.90
581 586 5.813080 AACTTTATTCTCACCGGTATTGC 57.187 39.130 6.87 0.00 0.00 3.56
582 587 4.839121 ACTTTATTCTCACCGGTATTGCA 58.161 39.130 6.87 0.00 0.00 4.08
583 588 4.634443 ACTTTATTCTCACCGGTATTGCAC 59.366 41.667 6.87 0.00 0.00 4.57
584 589 2.038387 ATTCTCACCGGTATTGCACC 57.962 50.000 6.87 0.00 44.75 5.01
585 590 0.035820 TTCTCACCGGTATTGCACCC 60.036 55.000 6.87 0.00 45.52 4.61
586 591 0.907704 TCTCACCGGTATTGCACCCT 60.908 55.000 6.87 0.00 45.52 4.34
587 592 0.462047 CTCACCGGTATTGCACCCTC 60.462 60.000 6.87 0.00 45.52 4.30
588 593 1.451387 CACCGGTATTGCACCCTCC 60.451 63.158 6.87 0.00 45.52 4.30
589 594 2.203015 CCGGTATTGCACCCTCCG 60.203 66.667 10.52 10.52 45.52 4.63
590 595 2.895372 CGGTATTGCACCCTCCGC 60.895 66.667 6.00 0.00 45.52 5.54
591 596 2.270850 GGTATTGCACCCTCCGCA 59.729 61.111 0.00 0.00 42.07 5.69
595 600 2.513395 TTGCACCCTCCGCAAGAA 59.487 55.556 0.00 0.00 44.13 2.52
596 601 1.896660 TTGCACCCTCCGCAAGAAC 60.897 57.895 0.00 0.00 44.13 3.01
597 602 2.281484 GCACCCTCCGCAAGAACA 60.281 61.111 0.00 0.00 43.02 3.18
598 603 1.675641 GCACCCTCCGCAAGAACAT 60.676 57.895 0.00 0.00 43.02 2.71
599 604 0.392461 GCACCCTCCGCAAGAACATA 60.392 55.000 0.00 0.00 43.02 2.29
600 605 1.948611 GCACCCTCCGCAAGAACATAA 60.949 52.381 0.00 0.00 43.02 1.90
601 606 2.432444 CACCCTCCGCAAGAACATAAA 58.568 47.619 0.00 0.00 43.02 1.40
602 607 2.817258 CACCCTCCGCAAGAACATAAAA 59.183 45.455 0.00 0.00 43.02 1.52
603 608 3.443681 CACCCTCCGCAAGAACATAAAAT 59.556 43.478 0.00 0.00 43.02 1.82
604 609 4.638421 CACCCTCCGCAAGAACATAAAATA 59.362 41.667 0.00 0.00 43.02 1.40
605 610 4.638865 ACCCTCCGCAAGAACATAAAATAC 59.361 41.667 0.00 0.00 43.02 1.89
606 611 4.036380 CCCTCCGCAAGAACATAAAATACC 59.964 45.833 0.00 0.00 43.02 2.73
607 612 4.638421 CCTCCGCAAGAACATAAAATACCA 59.362 41.667 0.00 0.00 43.02 3.25
608 613 5.299279 CCTCCGCAAGAACATAAAATACCAT 59.701 40.000 0.00 0.00 43.02 3.55
609 614 6.485313 CCTCCGCAAGAACATAAAATACCATA 59.515 38.462 0.00 0.00 43.02 2.74
610 615 7.012894 CCTCCGCAAGAACATAAAATACCATAA 59.987 37.037 0.00 0.00 43.02 1.90
611 616 8.282455 TCCGCAAGAACATAAAATACCATAAA 57.718 30.769 0.00 0.00 43.02 1.40
612 617 8.740906 TCCGCAAGAACATAAAATACCATAAAA 58.259 29.630 0.00 0.00 43.02 1.52
613 618 9.360093 CCGCAAGAACATAAAATACCATAAAAA 57.640 29.630 0.00 0.00 43.02 1.94
639 644 8.330302 TCGTACTTGAAAACTTTTAAACATGC 57.670 30.769 0.00 0.00 0.00 4.06
640 645 7.432838 TCGTACTTGAAAACTTTTAAACATGCC 59.567 33.333 0.00 0.00 0.00 4.40
641 646 7.434013 CGTACTTGAAAACTTTTAAACATGCCT 59.566 33.333 0.00 0.00 0.00 4.75
642 647 7.538303 ACTTGAAAACTTTTAAACATGCCTG 57.462 32.000 0.00 0.00 0.00 4.85
643 648 6.538381 ACTTGAAAACTTTTAAACATGCCTGG 59.462 34.615 0.00 0.00 0.00 4.45
644 649 6.227298 TGAAAACTTTTAAACATGCCTGGA 57.773 33.333 0.00 0.00 0.00 3.86
645 650 6.644347 TGAAAACTTTTAAACATGCCTGGAA 58.356 32.000 0.00 0.00 0.00 3.53
646 651 6.760770 TGAAAACTTTTAAACATGCCTGGAAG 59.239 34.615 0.00 0.00 0.00 3.46
810 815 2.614520 TCGCCTCTCTTCTTCTCATACG 59.385 50.000 0.00 0.00 0.00 3.06
811 816 2.287308 CGCCTCTCTTCTTCTCATACGG 60.287 54.545 0.00 0.00 0.00 4.02
812 817 2.544903 GCCTCTCTTCTTCTCATACGGC 60.545 54.545 0.00 0.00 0.00 5.68
813 818 2.955660 CCTCTCTTCTTCTCATACGGCT 59.044 50.000 0.00 0.00 0.00 5.52
814 819 3.383185 CCTCTCTTCTTCTCATACGGCTT 59.617 47.826 0.00 0.00 0.00 4.35
815 820 4.499019 CCTCTCTTCTTCTCATACGGCTTC 60.499 50.000 0.00 0.00 0.00 3.86
816 821 3.381908 TCTCTTCTTCTCATACGGCTTCC 59.618 47.826 0.00 0.00 0.00 3.46
817 822 3.096852 TCTTCTTCTCATACGGCTTCCA 58.903 45.455 0.00 0.00 0.00 3.53
818 823 3.513912 TCTTCTTCTCATACGGCTTCCAA 59.486 43.478 0.00 0.00 0.00 3.53
819 824 3.247006 TCTTCTCATACGGCTTCCAAC 57.753 47.619 0.00 0.00 0.00 3.77
820 825 2.832129 TCTTCTCATACGGCTTCCAACT 59.168 45.455 0.00 0.00 0.00 3.16
821 826 2.672961 TCTCATACGGCTTCCAACTG 57.327 50.000 0.00 0.00 0.00 3.16
822 827 1.009829 CTCATACGGCTTCCAACTGC 58.990 55.000 0.00 0.00 0.00 4.40
823 828 0.613260 TCATACGGCTTCCAACTGCT 59.387 50.000 0.00 0.00 0.00 4.24
824 829 1.828595 TCATACGGCTTCCAACTGCTA 59.171 47.619 0.00 0.00 0.00 3.49
825 830 1.933853 CATACGGCTTCCAACTGCTAC 59.066 52.381 0.00 0.00 0.00 3.58
826 831 0.108992 TACGGCTTCCAACTGCTACG 60.109 55.000 0.00 0.00 0.00 3.51
827 832 1.374252 CGGCTTCCAACTGCTACGT 60.374 57.895 0.00 0.00 0.00 3.57
828 833 0.949105 CGGCTTCCAACTGCTACGTT 60.949 55.000 0.00 0.00 0.00 3.99
829 834 1.235724 GGCTTCCAACTGCTACGTTT 58.764 50.000 0.00 0.00 0.00 3.60
830 835 1.069227 GGCTTCCAACTGCTACGTTTG 60.069 52.381 0.00 0.00 0.00 2.93
831 836 1.602377 GCTTCCAACTGCTACGTTTGT 59.398 47.619 0.00 0.00 0.00 2.83
832 837 2.032924 GCTTCCAACTGCTACGTTTGTT 59.967 45.455 0.00 0.00 0.00 2.83
833 838 3.249080 GCTTCCAACTGCTACGTTTGTTA 59.751 43.478 0.00 0.00 0.00 2.41
834 839 4.260866 GCTTCCAACTGCTACGTTTGTTAA 60.261 41.667 0.00 0.00 0.00 2.01
835 840 4.799419 TCCAACTGCTACGTTTGTTAAC 57.201 40.909 0.00 0.00 0.00 2.01
846 851 3.191735 GTTTGTTAACGCGCCAATACT 57.808 42.857 5.73 0.00 0.00 2.12
847 852 3.557508 GTTTGTTAACGCGCCAATACTT 58.442 40.909 5.73 0.00 0.00 2.24
848 853 2.884663 TGTTAACGCGCCAATACTTG 57.115 45.000 5.73 0.00 0.00 3.16
849 854 2.414806 TGTTAACGCGCCAATACTTGA 58.585 42.857 5.73 0.00 0.00 3.02
850 855 3.004171 TGTTAACGCGCCAATACTTGAT 58.996 40.909 5.73 0.00 0.00 2.57
851 856 4.182339 TGTTAACGCGCCAATACTTGATA 58.818 39.130 5.73 0.00 0.00 2.15
852 857 4.630505 TGTTAACGCGCCAATACTTGATAA 59.369 37.500 5.73 0.00 0.00 1.75
853 858 3.668596 AACGCGCCAATACTTGATAAC 57.331 42.857 5.73 0.00 0.00 1.89
854 859 2.901249 ACGCGCCAATACTTGATAACT 58.099 42.857 5.73 0.00 0.00 2.24
855 860 2.607635 ACGCGCCAATACTTGATAACTG 59.392 45.455 5.73 0.00 0.00 3.16
856 861 2.599848 CGCGCCAATACTTGATAACTGC 60.600 50.000 0.00 0.00 0.00 4.40
857 862 2.614057 GCGCCAATACTTGATAACTGCT 59.386 45.455 0.00 0.00 0.00 4.24
858 863 3.065371 GCGCCAATACTTGATAACTGCTT 59.935 43.478 0.00 0.00 0.00 3.91
859 864 4.591202 CGCCAATACTTGATAACTGCTTG 58.409 43.478 0.00 0.00 0.00 4.01
860 865 4.094887 CGCCAATACTTGATAACTGCTTGT 59.905 41.667 0.00 0.00 0.00 3.16
861 866 5.335127 GCCAATACTTGATAACTGCTTGTG 58.665 41.667 0.00 0.00 0.00 3.33
862 867 5.335127 CCAATACTTGATAACTGCTTGTGC 58.665 41.667 0.00 0.00 40.20 4.57
863 868 5.124457 CCAATACTTGATAACTGCTTGTGCT 59.876 40.000 0.00 0.00 40.48 4.40
864 869 6.253746 CAATACTTGATAACTGCTTGTGCTC 58.746 40.000 0.00 0.00 40.48 4.26
865 870 3.077359 ACTTGATAACTGCTTGTGCTCC 58.923 45.455 0.00 0.00 40.48 4.70
866 871 2.113860 TGATAACTGCTTGTGCTCCC 57.886 50.000 0.00 0.00 40.48 4.30
867 872 1.630369 TGATAACTGCTTGTGCTCCCT 59.370 47.619 0.00 0.00 40.48 4.20
868 873 2.012673 GATAACTGCTTGTGCTCCCTG 58.987 52.381 0.00 0.00 40.48 4.45
869 874 0.036732 TAACTGCTTGTGCTCCCTGG 59.963 55.000 0.00 0.00 40.48 4.45
870 875 1.708993 AACTGCTTGTGCTCCCTGGA 61.709 55.000 0.00 0.00 40.48 3.86
871 876 1.073722 CTGCTTGTGCTCCCTGGAA 59.926 57.895 0.00 0.00 40.48 3.53
872 877 0.323178 CTGCTTGTGCTCCCTGGAAT 60.323 55.000 0.00 0.00 40.48 3.01
873 878 0.991146 TGCTTGTGCTCCCTGGAATA 59.009 50.000 0.00 0.00 40.48 1.75
874 879 1.565759 TGCTTGTGCTCCCTGGAATAT 59.434 47.619 0.00 0.00 40.48 1.28
875 880 2.025037 TGCTTGTGCTCCCTGGAATATT 60.025 45.455 0.00 0.00 40.48 1.28
876 881 2.360165 GCTTGTGCTCCCTGGAATATTG 59.640 50.000 0.00 0.00 36.03 1.90
877 882 3.624777 CTTGTGCTCCCTGGAATATTGT 58.375 45.455 0.00 0.00 0.00 2.71
878 883 3.281727 TGTGCTCCCTGGAATATTGTC 57.718 47.619 0.00 0.00 0.00 3.18
879 884 2.575735 TGTGCTCCCTGGAATATTGTCA 59.424 45.455 0.00 0.00 0.00 3.58
880 885 3.202818 TGTGCTCCCTGGAATATTGTCAT 59.797 43.478 0.00 0.00 0.00 3.06
881 886 4.210331 GTGCTCCCTGGAATATTGTCATT 58.790 43.478 0.00 0.00 0.00 2.57
882 887 4.646492 GTGCTCCCTGGAATATTGTCATTT 59.354 41.667 0.00 0.00 0.00 2.32
883 888 4.889409 TGCTCCCTGGAATATTGTCATTTC 59.111 41.667 0.00 0.00 0.00 2.17
884 889 4.279420 GCTCCCTGGAATATTGTCATTTCC 59.721 45.833 0.00 0.00 39.50 3.13
885 890 5.448654 CTCCCTGGAATATTGTCATTTCCA 58.551 41.667 0.00 10.38 45.00 3.53
886 891 5.836705 TCCCTGGAATATTGTCATTTCCAA 58.163 37.500 11.45 0.00 46.07 3.53
887 892 5.893255 TCCCTGGAATATTGTCATTTCCAAG 59.107 40.000 11.45 7.27 46.07 3.61
888 893 5.069516 CCCTGGAATATTGTCATTTCCAAGG 59.930 44.000 10.62 10.62 46.07 3.61
889 894 5.893255 CCTGGAATATTGTCATTTCCAAGGA 59.107 40.000 11.45 0.00 46.07 3.36
890 895 6.380846 CCTGGAATATTGTCATTTCCAAGGAA 59.619 38.462 11.45 0.00 46.07 3.36
891 896 7.169158 TGGAATATTGTCATTTCCAAGGAAC 57.831 36.000 0.00 0.00 44.41 3.62
892 897 6.154363 TGGAATATTGTCATTTCCAAGGAACC 59.846 38.462 0.00 0.00 44.41 3.62
893 898 6.406961 GGAATATTGTCATTTCCAAGGAACCC 60.407 42.308 0.00 0.00 39.00 4.11
894 899 3.320610 TTGTCATTTCCAAGGAACCCA 57.679 42.857 0.00 0.00 33.41 4.51
895 900 2.875296 TGTCATTTCCAAGGAACCCAG 58.125 47.619 0.00 0.00 33.41 4.45
896 901 2.176798 TGTCATTTCCAAGGAACCCAGT 59.823 45.455 0.00 0.00 33.41 4.00
897 902 3.230976 GTCATTTCCAAGGAACCCAGTT 58.769 45.455 0.00 0.00 33.41 3.16
898 903 3.641436 GTCATTTCCAAGGAACCCAGTTT 59.359 43.478 0.00 0.00 33.41 2.66
899 904 4.100963 GTCATTTCCAAGGAACCCAGTTTT 59.899 41.667 0.00 0.00 33.41 2.43
900 905 4.343814 TCATTTCCAAGGAACCCAGTTTTC 59.656 41.667 0.00 0.00 33.41 2.29
901 906 3.680777 TTCCAAGGAACCCAGTTTTCT 57.319 42.857 0.00 0.00 0.00 2.52
902 907 3.680777 TCCAAGGAACCCAGTTTTCTT 57.319 42.857 0.00 0.00 0.00 2.52
903 908 3.989056 TCCAAGGAACCCAGTTTTCTTT 58.011 40.909 0.00 0.00 0.00 2.52
904 909 4.358214 TCCAAGGAACCCAGTTTTCTTTT 58.642 39.130 0.00 0.00 0.00 2.27
905 910 4.780554 TCCAAGGAACCCAGTTTTCTTTTT 59.219 37.500 0.00 0.00 0.00 1.94
906 911 4.875536 CCAAGGAACCCAGTTTTCTTTTTG 59.124 41.667 0.00 0.00 0.00 2.44
907 912 5.337975 CCAAGGAACCCAGTTTTCTTTTTGA 60.338 40.000 0.00 0.00 0.00 2.69
908 913 5.598416 AGGAACCCAGTTTTCTTTTTGAG 57.402 39.130 0.00 0.00 0.00 3.02
909 914 4.405680 AGGAACCCAGTTTTCTTTTTGAGG 59.594 41.667 0.00 0.00 0.00 3.86
910 915 4.442893 GGAACCCAGTTTTCTTTTTGAGGG 60.443 45.833 0.00 0.00 40.88 4.30
911 916 3.989056 ACCCAGTTTTCTTTTTGAGGGA 58.011 40.909 0.00 0.00 38.43 4.20
912 917 3.704566 ACCCAGTTTTCTTTTTGAGGGAC 59.295 43.478 0.00 0.00 38.43 4.46
913 918 3.704061 CCCAGTTTTCTTTTTGAGGGACA 59.296 43.478 0.00 0.00 37.22 4.02
914 919 4.202151 CCCAGTTTTCTTTTTGAGGGACAG 60.202 45.833 0.00 0.00 37.22 3.51
915 920 4.402474 CCAGTTTTCTTTTTGAGGGACAGT 59.598 41.667 0.00 0.00 0.00 3.55
916 921 5.592688 CCAGTTTTCTTTTTGAGGGACAGTA 59.407 40.000 0.00 0.00 0.00 2.74
917 922 6.096282 CCAGTTTTCTTTTTGAGGGACAGTAA 59.904 38.462 0.00 0.00 0.00 2.24
918 923 6.972901 CAGTTTTCTTTTTGAGGGACAGTAAC 59.027 38.462 0.00 0.00 0.00 2.50
919 924 6.096423 AGTTTTCTTTTTGAGGGACAGTAACC 59.904 38.462 0.00 0.00 0.00 2.85
1025 1037 2.161609 CAGCAATACGAAAGTTGGTCCC 59.838 50.000 0.00 0.00 46.40 4.46
1033 1045 4.021229 ACGAAAGTTGGTCCCTTTTCTTT 58.979 39.130 0.00 0.00 46.40 2.52
1093 1105 4.540824 GTCCATTTTCTTCAGTCTGCAAC 58.459 43.478 0.00 0.00 0.00 4.17
1217 1232 1.228124 CCTCTCCGGCGAGATCTCT 60.228 63.158 23.05 0.00 44.25 3.10
1221 1236 0.250295 CTCCGGCGAGATCTCTCTCT 60.250 60.000 20.26 0.00 44.92 3.10
1222 1237 0.250124 TCCGGCGAGATCTCTCTCTC 60.250 60.000 20.26 4.57 44.92 3.20
1223 1238 1.234615 CCGGCGAGATCTCTCTCTCC 61.235 65.000 20.26 11.61 45.96 3.71
1224 1239 2.244000 GGCGAGATCTCTCTCTCCG 58.756 63.158 20.26 7.23 42.07 4.63
1354 1369 2.420466 GGTAAGGACCCGGCGATC 59.580 66.667 9.30 5.39 40.23 3.69
1355 1370 2.132352 GGTAAGGACCCGGCGATCT 61.132 63.158 9.30 0.00 40.23 2.75
1356 1371 1.363080 GTAAGGACCCGGCGATCTC 59.637 63.158 9.30 0.00 0.00 2.75
1357 1372 1.831286 TAAGGACCCGGCGATCTCC 60.831 63.158 9.30 8.99 0.00 3.71
1358 1373 2.294170 TAAGGACCCGGCGATCTCCT 62.294 60.000 9.30 11.37 34.38 3.69
1419 1434 0.039074 CCCAGATCTGACGCCGTATC 60.039 60.000 24.62 0.00 0.00 2.24
1713 1729 1.852067 AATTCTGTGCGCCCGTTGTC 61.852 55.000 4.18 0.00 0.00 3.18
1745 1761 1.081906 CTGTGGATGTTGTGCGTGC 60.082 57.895 0.00 0.00 0.00 5.34
1763 1779 1.056750 CGATTCGCCGTCGTGAAAC 59.943 57.895 0.00 0.00 41.64 2.78
1768 1784 2.087009 CGCCGTCGTGAAACTCTCC 61.087 63.158 0.00 0.00 31.75 3.71
1788 1804 2.483876 CCTTGTGGTATGGCATCGTAG 58.516 52.381 1.65 0.00 0.00 3.51
1816 1832 2.872858 GAGATCGAATGGGTTACTTGGC 59.127 50.000 0.00 0.00 0.00 4.52
1824 1840 1.202879 TGGGTTACTTGGCAGAACTGG 60.203 52.381 3.99 0.00 0.00 4.00
1837 1853 3.181493 GCAGAACTGGCTCCAATTATGTG 60.181 47.826 6.59 0.00 28.82 3.21
1842 1858 4.917385 ACTGGCTCCAATTATGTGTGTTA 58.083 39.130 0.00 0.00 0.00 2.41
1850 1866 6.836953 TCCAATTATGTGTGTTATGTTCGTG 58.163 36.000 0.00 0.00 0.00 4.35
1857 1873 6.699895 TGTGTGTTATGTTCGTGTCTATTC 57.300 37.500 0.00 0.00 0.00 1.75
1860 1876 4.860907 GTGTTATGTTCGTGTCTATTCGGT 59.139 41.667 0.00 0.00 0.00 4.69
1873 1889 6.199154 GTGTCTATTCGGTAGTGTGATTGATG 59.801 42.308 0.00 0.00 0.00 3.07
1875 1891 3.326836 TTCGGTAGTGTGATTGATGCA 57.673 42.857 0.00 0.00 0.00 3.96
1881 1897 2.430465 AGTGTGATTGATGCAGTGGTC 58.570 47.619 0.00 0.00 0.00 4.02
1891 1907 2.198827 TGCAGTGGTCCTATGTTTGG 57.801 50.000 0.00 0.00 0.00 3.28
1892 1908 1.271871 TGCAGTGGTCCTATGTTTGGG 60.272 52.381 0.00 0.00 0.00 4.12
1894 1910 2.817839 GCAGTGGTCCTATGTTTGGGTT 60.818 50.000 0.00 0.00 0.00 4.11
1943 1959 2.749621 CAGGGTGCCATAGTTTTGAGAC 59.250 50.000 0.00 0.00 0.00 3.36
1944 1960 1.737793 GGGTGCCATAGTTTTGAGACG 59.262 52.381 0.00 0.00 0.00 4.18
1946 1962 2.673368 GGTGCCATAGTTTTGAGACGAG 59.327 50.000 0.00 0.00 0.00 4.18
1948 1964 3.123621 GTGCCATAGTTTTGAGACGAGTG 59.876 47.826 0.00 0.00 0.00 3.51
1956 1972 1.318576 TTGAGACGAGTGCTCACTGA 58.681 50.000 7.33 0.00 41.72 3.41
2006 2022 5.700832 TCCATTTTTGTGTGCTAGAGTAGTG 59.299 40.000 0.00 0.00 0.00 2.74
2007 2023 5.470098 CCATTTTTGTGTGCTAGAGTAGTGT 59.530 40.000 0.00 0.00 0.00 3.55
2008 2024 6.017109 CCATTTTTGTGTGCTAGAGTAGTGTT 60.017 38.462 0.00 0.00 0.00 3.32
2009 2025 6.995511 TTTTTGTGTGCTAGAGTAGTGTTT 57.004 33.333 0.00 0.00 0.00 2.83
2029 2045 3.828875 TTTGGTTTGGAGCCGATTTTT 57.171 38.095 0.00 0.00 0.00 1.94
2049 2065 3.231298 GCTCTGGCCGGGTATTCT 58.769 61.111 12.87 0.00 0.00 2.40
2120 2144 1.798813 GAGGTGCGAGTTACTTGGTTG 59.201 52.381 1.40 0.00 0.00 3.77
2129 2153 0.696501 TTACTTGGTTGGAGGAGCCC 59.303 55.000 0.00 0.00 34.97 5.19
2132 2156 4.974438 TGGTTGGAGGAGCCCGGT 62.974 66.667 0.00 0.00 34.97 5.28
2187 2212 2.239400 CATCTGCCTGGACGTATAGGA 58.761 52.381 18.89 5.89 36.11 2.94
2251 2283 9.040259 AGTCACCATAAGTAGTATATGCATCAT 57.960 33.333 0.19 0.00 30.91 2.45
2448 2481 5.590259 TGCAAACTTCCAAGCTAATATCCTC 59.410 40.000 0.00 0.00 0.00 3.71
2452 2485 9.396022 CAAACTTCCAAGCTAATATCCTCTAAA 57.604 33.333 0.00 0.00 0.00 1.85
2486 2519 4.193826 TCTGCTTTAGAGGCTTACTGTG 57.806 45.455 0.00 0.00 0.00 3.66
2495 2528 4.729868 AGAGGCTTACTGTGGTTTTCATT 58.270 39.130 0.00 0.00 0.00 2.57
2499 2532 7.121315 AGAGGCTTACTGTGGTTTTCATTATTC 59.879 37.037 0.00 0.00 0.00 1.75
2513 2546 7.795431 TTTCATTATTCACGCTGTTTTGATC 57.205 32.000 0.00 0.00 0.00 2.92
2536 2569 7.514784 TCATCTTGACAATGTTTCATTCAGT 57.485 32.000 0.00 0.00 0.00 3.41
2610 2654 3.045142 GCTTGTGTGCCTGCATGT 58.955 55.556 0.00 0.00 0.00 3.21
2650 2694 4.380128 GCACCAGGTCCTTTTAAATAACCG 60.380 45.833 0.00 4.81 35.12 4.44
2657 2701 6.317893 AGGTCCTTTTAAATAACCGTATGCTG 59.682 38.462 7.94 0.00 35.12 4.41
2659 2703 7.012989 GGTCCTTTTAAATAACCGTATGCTGAT 59.987 37.037 0.00 0.00 0.00 2.90
2690 2734 6.974932 AGTATTCATGTGATCACAGTCAAC 57.025 37.500 30.63 22.78 45.48 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.007716 CGAGTTTGAATAAAATTACACGTGACT 58.992 33.333 25.01 9.57 0.00 3.41
1 2 7.267600 CCGAGTTTGAATAAAATTACACGTGAC 59.732 37.037 25.01 4.24 0.00 3.67
6 7 7.148869 GGTTGCCGAGTTTGAATAAAATTACAC 60.149 37.037 0.00 0.00 0.00 2.90
26 27 3.290948 TCTGTACCCATAATGGTTGCC 57.709 47.619 0.00 0.00 39.91 4.52
27 28 3.004734 GCATCTGTACCCATAATGGTTGC 59.995 47.826 0.00 0.00 39.91 4.17
42 43 4.445448 GGGTCTATGATCCAAAGCATCTGT 60.445 45.833 0.00 0.00 32.11 3.41
45 46 4.090761 TGGGTCTATGATCCAAAGCATC 57.909 45.455 0.00 0.00 40.22 3.91
71 75 9.851686 TCTTAGAAACATGAGCCATTATGTAAT 57.148 29.630 0.00 0.00 36.56 1.89
77 82 9.679661 TGTAATTCTTAGAAACATGAGCCATTA 57.320 29.630 0.00 0.00 0.00 1.90
140 145 6.096846 GGGTAGTAATTCATGTTGCAAGGATT 59.903 38.462 0.00 0.00 0.00 3.01
189 194 1.961394 AGTGCCACGACTTCAGACTAA 59.039 47.619 0.00 0.00 0.00 2.24
190 195 1.269723 CAGTGCCACGACTTCAGACTA 59.730 52.381 0.00 0.00 0.00 2.59
209 214 1.055849 ATGCAGGTATACGGATGGCA 58.944 50.000 0.00 0.00 0.00 4.92
214 219 7.116075 AGTTAAGTTTATGCAGGTATACGGA 57.884 36.000 0.00 0.00 0.00 4.69
269 274 4.409574 TCCCATATTTTTAGACGTAGGGCA 59.590 41.667 0.00 0.00 33.79 5.36
277 282 8.237267 CACTCACAACTTCCCATATTTTTAGAC 58.763 37.037 0.00 0.00 0.00 2.59
286 291 2.976185 TCCACACTCACAACTTCCCATA 59.024 45.455 0.00 0.00 0.00 2.74
312 317 2.522367 GGTTGTCCCCGGACCAAGA 61.522 63.158 0.73 0.00 43.97 3.02
327 332 5.006386 CGACGACCTATATTACTAGGGGTT 58.994 45.833 0.00 0.00 42.29 4.11
329 334 4.836825 TCGACGACCTATATTACTAGGGG 58.163 47.826 0.00 0.00 42.29 4.79
360 365 7.010923 GTGCTTATCTGACATCTTGGTAAAGAG 59.989 40.741 0.00 0.00 45.50 2.85
389 394 6.969366 TGTTTGTATGATCTCTTGTGGTTTG 58.031 36.000 0.00 0.00 0.00 2.93
394 399 7.140705 TGCTTTTGTTTGTATGATCTCTTGTG 58.859 34.615 0.00 0.00 0.00 3.33
408 413 3.155093 AGTGTCTGCTGCTTTTGTTTG 57.845 42.857 0.00 0.00 0.00 2.93
417 422 3.365364 GGATTTGTGTTAGTGTCTGCTGC 60.365 47.826 0.00 0.00 0.00 5.25
420 425 2.806244 ACGGATTTGTGTTAGTGTCTGC 59.194 45.455 0.00 0.00 0.00 4.26
448 453 3.561310 TGGATTTATGTCTTCGCAGATGC 59.439 43.478 0.00 0.00 35.04 3.91
449 454 5.295292 AGTTGGATTTATGTCTTCGCAGATG 59.705 40.000 0.00 0.00 35.04 2.90
450 455 5.431765 AGTTGGATTTATGTCTTCGCAGAT 58.568 37.500 0.00 0.00 35.04 2.90
451 456 4.832248 AGTTGGATTTATGTCTTCGCAGA 58.168 39.130 0.00 0.00 0.00 4.26
452 457 5.447818 GGAAGTTGGATTTATGTCTTCGCAG 60.448 44.000 0.00 0.00 34.16 5.18
453 458 4.394920 GGAAGTTGGATTTATGTCTTCGCA 59.605 41.667 0.00 0.00 34.16 5.10
454 459 4.494199 CGGAAGTTGGATTTATGTCTTCGC 60.494 45.833 0.00 0.00 34.16 4.70
455 460 4.494199 GCGGAAGTTGGATTTATGTCTTCG 60.494 45.833 0.00 0.00 34.16 3.79
456 461 4.394920 TGCGGAAGTTGGATTTATGTCTTC 59.605 41.667 0.00 0.00 0.00 2.87
457 462 4.331968 TGCGGAAGTTGGATTTATGTCTT 58.668 39.130 0.00 0.00 0.00 3.01
458 463 3.950397 TGCGGAAGTTGGATTTATGTCT 58.050 40.909 0.00 0.00 0.00 3.41
459 464 4.394920 TCTTGCGGAAGTTGGATTTATGTC 59.605 41.667 16.72 0.00 0.00 3.06
460 465 4.331968 TCTTGCGGAAGTTGGATTTATGT 58.668 39.130 16.72 0.00 0.00 2.29
461 466 4.963276 TCTTGCGGAAGTTGGATTTATG 57.037 40.909 16.72 0.00 0.00 1.90
462 467 5.192927 TGATCTTGCGGAAGTTGGATTTAT 58.807 37.500 16.72 0.00 0.00 1.40
463 468 4.584874 TGATCTTGCGGAAGTTGGATTTA 58.415 39.130 16.72 0.00 0.00 1.40
464 469 3.420893 TGATCTTGCGGAAGTTGGATTT 58.579 40.909 16.72 0.00 0.00 2.17
465 470 3.012518 CTGATCTTGCGGAAGTTGGATT 58.987 45.455 16.72 0.00 0.00 3.01
466 471 2.237143 TCTGATCTTGCGGAAGTTGGAT 59.763 45.455 16.72 2.59 0.00 3.41
467 472 1.623311 TCTGATCTTGCGGAAGTTGGA 59.377 47.619 16.72 8.14 0.00 3.53
468 473 1.734465 GTCTGATCTTGCGGAAGTTGG 59.266 52.381 16.72 6.05 0.00 3.77
469 474 1.734465 GGTCTGATCTTGCGGAAGTTG 59.266 52.381 16.72 5.74 0.00 3.16
470 475 1.625818 AGGTCTGATCTTGCGGAAGTT 59.374 47.619 16.72 8.35 0.00 2.66
471 476 1.066573 CAGGTCTGATCTTGCGGAAGT 60.067 52.381 16.72 4.05 0.00 3.01
472 477 1.649664 CAGGTCTGATCTTGCGGAAG 58.350 55.000 10.87 10.87 0.00 3.46
473 478 0.391661 GCAGGTCTGATCTTGCGGAA 60.392 55.000 1.65 0.00 31.43 4.30
474 479 1.219124 GCAGGTCTGATCTTGCGGA 59.781 57.895 1.65 0.00 31.43 5.54
475 480 3.805267 GCAGGTCTGATCTTGCGG 58.195 61.111 1.65 0.00 31.43 5.69
477 482 1.565305 CTACGCAGGTCTGATCTTGC 58.435 55.000 1.65 0.00 37.13 4.01
478 483 1.751351 TCCTACGCAGGTCTGATCTTG 59.249 52.381 0.53 0.00 43.18 3.02
479 484 2.145397 TCCTACGCAGGTCTGATCTT 57.855 50.000 0.53 0.00 43.18 2.40
480 485 2.145397 TTCCTACGCAGGTCTGATCT 57.855 50.000 0.53 0.00 43.18 2.75
481 486 2.427453 TCTTTCCTACGCAGGTCTGATC 59.573 50.000 0.53 0.00 43.18 2.92
482 487 2.166664 GTCTTTCCTACGCAGGTCTGAT 59.833 50.000 0.53 0.00 43.18 2.90
483 488 1.544691 GTCTTTCCTACGCAGGTCTGA 59.455 52.381 0.53 0.00 43.18 3.27
484 489 1.272490 TGTCTTTCCTACGCAGGTCTG 59.728 52.381 0.53 0.00 43.18 3.51
485 490 1.629043 TGTCTTTCCTACGCAGGTCT 58.371 50.000 0.53 0.00 43.18 3.85
486 491 2.166664 AGATGTCTTTCCTACGCAGGTC 59.833 50.000 0.53 0.00 43.18 3.85
487 492 2.166664 GAGATGTCTTTCCTACGCAGGT 59.833 50.000 0.53 0.00 43.18 4.00
488 493 2.428890 AGAGATGTCTTTCCTACGCAGG 59.571 50.000 0.00 0.00 44.17 4.85
489 494 3.791973 AGAGATGTCTTTCCTACGCAG 57.208 47.619 0.00 0.00 0.00 5.18
490 495 3.066900 GCTAGAGATGTCTTTCCTACGCA 59.933 47.826 0.00 0.00 33.84 5.24
491 496 3.316868 AGCTAGAGATGTCTTTCCTACGC 59.683 47.826 0.00 0.00 33.84 4.42
492 497 4.336993 ACAGCTAGAGATGTCTTTCCTACG 59.663 45.833 0.00 0.00 41.26 3.51
493 498 5.358442 TCACAGCTAGAGATGTCTTTCCTAC 59.642 44.000 0.00 0.00 43.53 3.18
494 499 5.510430 TCACAGCTAGAGATGTCTTTCCTA 58.490 41.667 0.00 0.00 43.53 2.94
495 500 4.348486 TCACAGCTAGAGATGTCTTTCCT 58.652 43.478 0.00 0.00 43.53 3.36
496 501 4.727507 TCACAGCTAGAGATGTCTTTCC 57.272 45.455 0.00 0.00 43.53 3.13
497 502 7.038154 AGTATCACAGCTAGAGATGTCTTTC 57.962 40.000 0.00 0.00 43.53 2.62
498 503 7.013846 GGTAGTATCACAGCTAGAGATGTCTTT 59.986 40.741 0.00 0.00 43.53 2.52
499 504 6.488683 GGTAGTATCACAGCTAGAGATGTCTT 59.511 42.308 0.00 0.00 43.53 3.01
500 505 6.001460 GGTAGTATCACAGCTAGAGATGTCT 58.999 44.000 0.00 0.00 43.53 3.41
501 506 6.001460 AGGTAGTATCACAGCTAGAGATGTC 58.999 44.000 0.00 0.00 43.53 3.06
502 507 5.767665 CAGGTAGTATCACAGCTAGAGATGT 59.232 44.000 0.00 0.00 46.68 3.06
503 508 6.000840 TCAGGTAGTATCACAGCTAGAGATG 58.999 44.000 0.00 0.00 37.48 2.90
504 509 6.194285 TCAGGTAGTATCACAGCTAGAGAT 57.806 41.667 0.00 0.00 0.00 2.75
505 510 5.632034 TCAGGTAGTATCACAGCTAGAGA 57.368 43.478 0.00 0.00 0.00 3.10
506 511 7.120579 CCTTATCAGGTAGTATCACAGCTAGAG 59.879 44.444 0.00 0.00 35.06 2.43
507 512 6.943146 CCTTATCAGGTAGTATCACAGCTAGA 59.057 42.308 0.00 0.00 35.06 2.43
508 513 6.349777 GCCTTATCAGGTAGTATCACAGCTAG 60.350 46.154 0.00 0.00 43.18 3.42
509 514 5.477291 GCCTTATCAGGTAGTATCACAGCTA 59.523 44.000 0.00 0.00 43.18 3.32
510 515 4.282195 GCCTTATCAGGTAGTATCACAGCT 59.718 45.833 0.00 0.00 43.18 4.24
511 516 4.039245 TGCCTTATCAGGTAGTATCACAGC 59.961 45.833 0.00 0.00 43.18 4.40
512 517 5.791336 TGCCTTATCAGGTAGTATCACAG 57.209 43.478 0.00 0.00 43.18 3.66
513 518 5.838521 TGATGCCTTATCAGGTAGTATCACA 59.161 40.000 0.00 0.00 43.18 3.58
514 519 6.346477 TGATGCCTTATCAGGTAGTATCAC 57.654 41.667 0.00 0.00 43.18 3.06
549 554 8.996271 CCGGTGAGAATAAAGTTACTTAGTTTT 58.004 33.333 0.00 0.00 31.84 2.43
550 555 8.152898 ACCGGTGAGAATAAAGTTACTTAGTTT 58.847 33.333 6.12 0.00 33.92 2.66
551 556 7.674120 ACCGGTGAGAATAAAGTTACTTAGTT 58.326 34.615 6.12 0.00 0.00 2.24
552 557 7.237209 ACCGGTGAGAATAAAGTTACTTAGT 57.763 36.000 6.12 0.00 0.00 2.24
553 558 9.813446 AATACCGGTGAGAATAAAGTTACTTAG 57.187 33.333 19.93 0.00 0.00 2.18
554 559 9.590451 CAATACCGGTGAGAATAAAGTTACTTA 57.410 33.333 19.93 0.00 0.00 2.24
555 560 7.065443 GCAATACCGGTGAGAATAAAGTTACTT 59.935 37.037 19.93 0.00 0.00 2.24
556 561 6.537660 GCAATACCGGTGAGAATAAAGTTACT 59.462 38.462 19.93 0.00 0.00 2.24
557 562 6.314400 TGCAATACCGGTGAGAATAAAGTTAC 59.686 38.462 19.93 0.00 0.00 2.50
558 563 6.314400 GTGCAATACCGGTGAGAATAAAGTTA 59.686 38.462 19.93 0.00 0.00 2.24
559 564 5.123344 GTGCAATACCGGTGAGAATAAAGTT 59.877 40.000 19.93 0.00 0.00 2.66
560 565 4.634443 GTGCAATACCGGTGAGAATAAAGT 59.366 41.667 19.93 0.00 0.00 2.66
561 566 4.035208 GGTGCAATACCGGTGAGAATAAAG 59.965 45.833 19.93 0.00 40.26 1.85
562 567 3.942748 GGTGCAATACCGGTGAGAATAAA 59.057 43.478 19.93 0.00 40.26 1.40
563 568 3.537580 GGTGCAATACCGGTGAGAATAA 58.462 45.455 19.93 0.00 40.26 1.40
564 569 3.188159 GGTGCAATACCGGTGAGAATA 57.812 47.619 19.93 0.00 40.26 1.75
565 570 2.038387 GGTGCAATACCGGTGAGAAT 57.962 50.000 19.93 0.00 40.26 2.40
566 571 3.543884 GGTGCAATACCGGTGAGAA 57.456 52.632 19.93 0.00 40.26 2.87
574 579 1.377987 TTGCGGAGGGTGCAATACC 60.378 57.895 0.00 0.00 46.62 2.73
575 580 4.312052 TTGCGGAGGGTGCAATAC 57.688 55.556 0.00 0.00 46.62 1.89
579 584 2.281484 GTTCTTGCGGAGGGTGCA 60.281 61.111 0.00 0.00 41.38 4.57
580 585 0.392461 TATGTTCTTGCGGAGGGTGC 60.392 55.000 0.00 0.00 0.00 5.01
581 586 2.107950 TTATGTTCTTGCGGAGGGTG 57.892 50.000 0.00 0.00 0.00 4.61
582 587 2.871096 TTTATGTTCTTGCGGAGGGT 57.129 45.000 0.00 0.00 0.00 4.34
583 588 4.036380 GGTATTTTATGTTCTTGCGGAGGG 59.964 45.833 0.00 0.00 0.00 4.30
584 589 4.638421 TGGTATTTTATGTTCTTGCGGAGG 59.362 41.667 0.00 0.00 0.00 4.30
585 590 5.811399 TGGTATTTTATGTTCTTGCGGAG 57.189 39.130 0.00 0.00 0.00 4.63
586 591 7.867305 TTATGGTATTTTATGTTCTTGCGGA 57.133 32.000 0.00 0.00 0.00 5.54
587 592 8.918961 TTTTATGGTATTTTATGTTCTTGCGG 57.081 30.769 0.00 0.00 0.00 5.69
613 618 8.964150 GCATGTTTAAAAGTTTTCAAGTACGAT 58.036 29.630 3.60 0.00 0.00 3.73
614 619 7.432838 GGCATGTTTAAAAGTTTTCAAGTACGA 59.567 33.333 3.60 0.00 0.00 3.43
615 620 7.434013 AGGCATGTTTAAAAGTTTTCAAGTACG 59.566 33.333 3.60 0.00 0.00 3.67
616 621 8.539674 CAGGCATGTTTAAAAGTTTTCAAGTAC 58.460 33.333 3.60 0.00 0.00 2.73
617 622 7.708752 CCAGGCATGTTTAAAAGTTTTCAAGTA 59.291 33.333 3.60 0.00 0.00 2.24
618 623 6.538381 CCAGGCATGTTTAAAAGTTTTCAAGT 59.462 34.615 3.60 0.00 0.00 3.16
619 624 6.760770 TCCAGGCATGTTTAAAAGTTTTCAAG 59.239 34.615 3.60 0.00 0.00 3.02
620 625 6.644347 TCCAGGCATGTTTAAAAGTTTTCAA 58.356 32.000 3.60 0.00 0.00 2.69
621 626 6.227298 TCCAGGCATGTTTAAAAGTTTTCA 57.773 33.333 3.60 0.00 0.00 2.69
622 627 6.202762 CCTTCCAGGCATGTTTAAAAGTTTTC 59.797 38.462 3.60 0.00 0.00 2.29
623 628 6.054941 CCTTCCAGGCATGTTTAAAAGTTTT 58.945 36.000 6.06 6.06 0.00 2.43
624 629 5.365314 TCCTTCCAGGCATGTTTAAAAGTTT 59.635 36.000 0.00 0.00 34.61 2.66
625 630 4.898861 TCCTTCCAGGCATGTTTAAAAGTT 59.101 37.500 0.00 0.00 34.61 2.66
626 631 4.479158 TCCTTCCAGGCATGTTTAAAAGT 58.521 39.130 0.00 0.00 34.61 2.66
627 632 5.665916 ATCCTTCCAGGCATGTTTAAAAG 57.334 39.130 0.00 0.00 34.61 2.27
628 633 6.894654 TCATATCCTTCCAGGCATGTTTAAAA 59.105 34.615 0.00 0.00 34.61 1.52
629 634 6.321181 GTCATATCCTTCCAGGCATGTTTAAA 59.679 38.462 0.00 0.00 34.61 1.52
630 635 5.827797 GTCATATCCTTCCAGGCATGTTTAA 59.172 40.000 0.00 0.00 34.61 1.52
631 636 5.376625 GTCATATCCTTCCAGGCATGTTTA 58.623 41.667 0.00 0.00 34.61 2.01
632 637 4.210331 GTCATATCCTTCCAGGCATGTTT 58.790 43.478 0.00 0.00 34.61 2.83
633 638 3.825328 GTCATATCCTTCCAGGCATGTT 58.175 45.455 0.00 0.00 34.61 2.71
634 639 3.498774 GTCATATCCTTCCAGGCATGT 57.501 47.619 0.00 0.00 34.61 3.21
789 794 2.614520 CGTATGAGAAGAAGAGAGGCGA 59.385 50.000 0.00 0.00 0.00 5.54
790 795 2.287308 CCGTATGAGAAGAAGAGAGGCG 60.287 54.545 0.00 0.00 0.00 5.52
791 796 2.544903 GCCGTATGAGAAGAAGAGAGGC 60.545 54.545 0.00 0.00 0.00 4.70
792 797 2.955660 AGCCGTATGAGAAGAAGAGAGG 59.044 50.000 0.00 0.00 0.00 3.69
793 798 4.499019 GGAAGCCGTATGAGAAGAAGAGAG 60.499 50.000 0.00 0.00 0.00 3.20
794 799 3.381908 GGAAGCCGTATGAGAAGAAGAGA 59.618 47.826 0.00 0.00 0.00 3.10
795 800 3.131223 TGGAAGCCGTATGAGAAGAAGAG 59.869 47.826 0.00 0.00 0.00 2.85
796 801 3.096852 TGGAAGCCGTATGAGAAGAAGA 58.903 45.455 0.00 0.00 0.00 2.87
797 802 3.526931 TGGAAGCCGTATGAGAAGAAG 57.473 47.619 0.00 0.00 0.00 2.85
798 803 3.260884 AGTTGGAAGCCGTATGAGAAGAA 59.739 43.478 0.00 0.00 0.00 2.52
799 804 2.832129 AGTTGGAAGCCGTATGAGAAGA 59.168 45.455 0.00 0.00 0.00 2.87
800 805 2.932614 CAGTTGGAAGCCGTATGAGAAG 59.067 50.000 0.00 0.00 0.00 2.85
801 806 2.935238 GCAGTTGGAAGCCGTATGAGAA 60.935 50.000 0.00 0.00 0.00 2.87
802 807 1.405526 GCAGTTGGAAGCCGTATGAGA 60.406 52.381 0.00 0.00 0.00 3.27
803 808 1.009829 GCAGTTGGAAGCCGTATGAG 58.990 55.000 0.00 0.00 0.00 2.90
804 809 0.613260 AGCAGTTGGAAGCCGTATGA 59.387 50.000 0.00 0.00 0.00 2.15
805 810 1.933853 GTAGCAGTTGGAAGCCGTATG 59.066 52.381 0.00 0.00 0.00 2.39
806 811 1.470979 CGTAGCAGTTGGAAGCCGTAT 60.471 52.381 0.00 0.00 0.00 3.06
807 812 0.108992 CGTAGCAGTTGGAAGCCGTA 60.109 55.000 0.00 0.00 0.00 4.02
808 813 1.374252 CGTAGCAGTTGGAAGCCGT 60.374 57.895 0.00 0.00 0.00 5.68
809 814 0.949105 AACGTAGCAGTTGGAAGCCG 60.949 55.000 0.00 0.00 32.39 5.52
810 815 1.069227 CAAACGTAGCAGTTGGAAGCC 60.069 52.381 0.00 0.00 34.14 4.35
811 816 1.602377 ACAAACGTAGCAGTTGGAAGC 59.398 47.619 0.00 0.00 34.14 3.86
812 817 3.963383 AACAAACGTAGCAGTTGGAAG 57.037 42.857 0.00 0.00 34.14 3.46
813 818 4.260294 CGTTAACAAACGTAGCAGTTGGAA 60.260 41.667 6.39 0.00 40.94 3.53
814 819 3.245754 CGTTAACAAACGTAGCAGTTGGA 59.754 43.478 6.39 0.00 40.94 3.53
815 820 3.537806 CGTTAACAAACGTAGCAGTTGG 58.462 45.455 6.39 0.00 40.94 3.77
816 821 2.962191 GCGTTAACAAACGTAGCAGTTG 59.038 45.455 11.73 0.00 46.91 3.16
817 822 2.347846 CGCGTTAACAAACGTAGCAGTT 60.348 45.455 11.73 0.00 46.91 3.16
818 823 1.190763 CGCGTTAACAAACGTAGCAGT 59.809 47.619 11.73 0.00 46.91 4.40
819 824 1.848275 CGCGTTAACAAACGTAGCAG 58.152 50.000 11.73 0.00 46.91 4.24
820 825 0.111178 GCGCGTTAACAAACGTAGCA 60.111 50.000 19.84 0.00 46.91 3.49
821 826 0.786806 GGCGCGTTAACAAACGTAGC 60.787 55.000 8.43 17.94 46.91 3.58
822 827 0.507785 TGGCGCGTTAACAAACGTAG 59.492 50.000 8.43 7.86 46.91 3.51
823 828 0.933097 TTGGCGCGTTAACAAACGTA 59.067 45.000 8.43 0.00 46.91 3.57
824 829 0.308376 ATTGGCGCGTTAACAAACGT 59.692 45.000 8.43 0.00 46.91 3.99
825 830 5.918709 CAAGTATTGGCGCGTTAACAAACG 61.919 45.833 8.43 7.31 43.94 3.60
826 831 3.191735 AGTATTGGCGCGTTAACAAAC 57.808 42.857 8.43 9.26 0.00 2.93
827 832 3.556513 CAAGTATTGGCGCGTTAACAAA 58.443 40.909 8.43 0.00 43.94 2.83
828 833 3.190314 CAAGTATTGGCGCGTTAACAA 57.810 42.857 8.43 9.00 43.94 2.83
829 834 2.884663 CAAGTATTGGCGCGTTAACA 57.115 45.000 8.43 0.00 43.94 2.41
838 843 6.182713 GCACAAGCAGTTATCAAGTATTGGC 61.183 44.000 0.00 0.00 43.55 4.52
839 844 5.124457 AGCACAAGCAGTTATCAAGTATTGG 59.876 40.000 0.00 0.00 45.45 3.16
840 845 6.187125 AGCACAAGCAGTTATCAAGTATTG 57.813 37.500 0.00 0.00 46.33 1.90
841 846 5.355350 GGAGCACAAGCAGTTATCAAGTATT 59.645 40.000 0.00 0.00 45.49 1.89
842 847 4.878397 GGAGCACAAGCAGTTATCAAGTAT 59.122 41.667 0.00 0.00 45.49 2.12
843 848 4.253685 GGAGCACAAGCAGTTATCAAGTA 58.746 43.478 0.00 0.00 45.49 2.24
844 849 3.077359 GGAGCACAAGCAGTTATCAAGT 58.923 45.455 0.00 0.00 45.49 3.16
845 850 2.421424 GGGAGCACAAGCAGTTATCAAG 59.579 50.000 0.00 0.00 45.49 3.02
846 851 2.040278 AGGGAGCACAAGCAGTTATCAA 59.960 45.455 0.00 0.00 45.49 2.57
847 852 1.630369 AGGGAGCACAAGCAGTTATCA 59.370 47.619 0.00 0.00 45.49 2.15
848 853 2.012673 CAGGGAGCACAAGCAGTTATC 58.987 52.381 0.00 0.00 45.49 1.75
849 854 1.340405 CCAGGGAGCACAAGCAGTTAT 60.340 52.381 0.00 0.00 45.49 1.89
850 855 0.036732 CCAGGGAGCACAAGCAGTTA 59.963 55.000 0.00 0.00 45.49 2.24
851 856 1.228367 CCAGGGAGCACAAGCAGTT 60.228 57.895 0.00 0.00 45.49 3.16
852 857 1.708993 TTCCAGGGAGCACAAGCAGT 61.709 55.000 0.00 0.00 45.49 4.40
853 858 0.323178 ATTCCAGGGAGCACAAGCAG 60.323 55.000 0.00 0.00 45.49 4.24
854 859 0.991146 TATTCCAGGGAGCACAAGCA 59.009 50.000 0.00 0.00 45.49 3.91
855 860 2.355010 ATATTCCAGGGAGCACAAGC 57.645 50.000 0.00 0.00 42.56 4.01
856 861 3.624777 ACAATATTCCAGGGAGCACAAG 58.375 45.455 0.00 0.00 0.00 3.16
857 862 3.010027 TGACAATATTCCAGGGAGCACAA 59.990 43.478 0.00 0.00 0.00 3.33
858 863 2.575735 TGACAATATTCCAGGGAGCACA 59.424 45.455 0.00 0.00 0.00 4.57
859 864 3.281727 TGACAATATTCCAGGGAGCAC 57.718 47.619 0.00 0.00 0.00 4.40
860 865 4.524802 AATGACAATATTCCAGGGAGCA 57.475 40.909 0.00 0.00 0.00 4.26
861 866 4.279420 GGAAATGACAATATTCCAGGGAGC 59.721 45.833 11.24 0.00 41.80 4.70
862 867 5.448654 TGGAAATGACAATATTCCAGGGAG 58.551 41.667 13.69 0.00 45.71 4.30
863 868 5.464588 TGGAAATGACAATATTCCAGGGA 57.535 39.130 13.69 0.00 45.71 4.20
868 873 6.406961 GGGTTCCTTGGAAATGACAATATTCC 60.407 42.308 3.39 9.82 42.39 3.01
869 874 6.154363 TGGGTTCCTTGGAAATGACAATATTC 59.846 38.462 3.39 0.00 0.00 1.75
870 875 6.022315 TGGGTTCCTTGGAAATGACAATATT 58.978 36.000 3.39 0.00 0.00 1.28
871 876 5.588845 TGGGTTCCTTGGAAATGACAATAT 58.411 37.500 3.39 0.00 0.00 1.28
872 877 5.004361 TGGGTTCCTTGGAAATGACAATA 57.996 39.130 3.39 0.00 0.00 1.90
873 878 3.834231 CTGGGTTCCTTGGAAATGACAAT 59.166 43.478 3.39 0.00 0.00 2.71
874 879 3.230134 CTGGGTTCCTTGGAAATGACAA 58.770 45.455 3.39 0.00 0.00 3.18
875 880 2.176798 ACTGGGTTCCTTGGAAATGACA 59.823 45.455 3.39 1.07 0.00 3.58
876 881 2.876581 ACTGGGTTCCTTGGAAATGAC 58.123 47.619 3.39 0.00 0.00 3.06
877 882 3.611025 AACTGGGTTCCTTGGAAATGA 57.389 42.857 3.39 0.00 0.00 2.57
878 883 4.344968 AGAAAACTGGGTTCCTTGGAAATG 59.655 41.667 3.39 0.00 0.00 2.32
879 884 4.556697 AGAAAACTGGGTTCCTTGGAAAT 58.443 39.130 3.39 0.00 0.00 2.17
880 885 3.989056 AGAAAACTGGGTTCCTTGGAAA 58.011 40.909 3.39 0.00 0.00 3.13
881 886 3.680777 AGAAAACTGGGTTCCTTGGAA 57.319 42.857 0.00 0.00 0.00 3.53
882 887 3.680777 AAGAAAACTGGGTTCCTTGGA 57.319 42.857 0.00 0.00 0.00 3.53
883 888 4.753516 AAAAGAAAACTGGGTTCCTTGG 57.246 40.909 0.00 0.00 0.00 3.61
884 889 5.729510 TCAAAAAGAAAACTGGGTTCCTTG 58.270 37.500 0.00 0.00 0.00 3.61
885 890 5.104941 CCTCAAAAAGAAAACTGGGTTCCTT 60.105 40.000 0.00 0.00 0.00 3.36
886 891 4.405680 CCTCAAAAAGAAAACTGGGTTCCT 59.594 41.667 0.00 0.00 0.00 3.36
887 892 4.442893 CCCTCAAAAAGAAAACTGGGTTCC 60.443 45.833 0.00 0.00 0.00 3.62
888 893 4.404394 TCCCTCAAAAAGAAAACTGGGTTC 59.596 41.667 0.00 0.00 35.20 3.62
889 894 4.161565 GTCCCTCAAAAAGAAAACTGGGTT 59.838 41.667 0.00 0.00 35.20 4.11
890 895 3.704566 GTCCCTCAAAAAGAAAACTGGGT 59.295 43.478 0.00 0.00 35.20 4.51
891 896 3.704061 TGTCCCTCAAAAAGAAAACTGGG 59.296 43.478 0.00 0.00 34.98 4.45
892 897 4.402474 ACTGTCCCTCAAAAAGAAAACTGG 59.598 41.667 0.00 0.00 0.00 4.00
893 898 5.582689 ACTGTCCCTCAAAAAGAAAACTG 57.417 39.130 0.00 0.00 0.00 3.16
894 899 6.096423 GGTTACTGTCCCTCAAAAAGAAAACT 59.904 38.462 0.00 0.00 0.00 2.66
895 900 6.270815 GGTTACTGTCCCTCAAAAAGAAAAC 58.729 40.000 0.00 0.00 0.00 2.43
896 901 5.361571 GGGTTACTGTCCCTCAAAAAGAAAA 59.638 40.000 0.00 0.00 41.58 2.29
897 902 4.891168 GGGTTACTGTCCCTCAAAAAGAAA 59.109 41.667 0.00 0.00 41.58 2.52
898 903 4.079672 TGGGTTACTGTCCCTCAAAAAGAA 60.080 41.667 6.18 0.00 44.84 2.52
899 904 3.460340 TGGGTTACTGTCCCTCAAAAAGA 59.540 43.478 6.18 0.00 44.84 2.52
900 905 3.821033 CTGGGTTACTGTCCCTCAAAAAG 59.179 47.826 6.18 0.00 44.84 2.27
901 906 3.460340 TCTGGGTTACTGTCCCTCAAAAA 59.540 43.478 6.18 0.00 44.84 1.94
902 907 3.050089 TCTGGGTTACTGTCCCTCAAAA 58.950 45.455 6.18 0.00 44.84 2.44
903 908 2.696775 TCTGGGTTACTGTCCCTCAAA 58.303 47.619 6.18 0.00 44.84 2.69
904 909 2.409064 TCTGGGTTACTGTCCCTCAA 57.591 50.000 6.18 0.00 44.84 3.02
905 910 2.642171 ATCTGGGTTACTGTCCCTCA 57.358 50.000 6.18 0.00 44.84 3.86
906 911 4.302559 AAAATCTGGGTTACTGTCCCTC 57.697 45.455 6.18 0.00 44.84 4.30
907 912 4.741928 AAAAATCTGGGTTACTGTCCCT 57.258 40.909 6.18 0.00 44.84 4.20
938 943 4.277423 GGGTTCCTGTTGATTCTCGAAAAA 59.723 41.667 0.00 0.00 0.00 1.94
939 944 3.818773 GGGTTCCTGTTGATTCTCGAAAA 59.181 43.478 0.00 0.00 0.00 2.29
940 945 3.181449 TGGGTTCCTGTTGATTCTCGAAA 60.181 43.478 0.00 0.00 0.00 3.46
941 946 2.370519 TGGGTTCCTGTTGATTCTCGAA 59.629 45.455 0.00 0.00 0.00 3.71
942 947 1.974957 TGGGTTCCTGTTGATTCTCGA 59.025 47.619 0.00 0.00 0.00 4.04
943 948 2.028112 TCTGGGTTCCTGTTGATTCTCG 60.028 50.000 0.00 0.00 0.00 4.04
944 949 3.703001 TCTGGGTTCCTGTTGATTCTC 57.297 47.619 0.00 0.00 0.00 2.87
945 950 5.983333 ATATCTGGGTTCCTGTTGATTCT 57.017 39.130 0.00 0.00 0.00 2.40
948 953 9.560860 TGTATATATATCTGGGTTCCTGTTGAT 57.439 33.333 0.00 0.00 0.00 2.57
949 954 8.812972 GTGTATATATATCTGGGTTCCTGTTGA 58.187 37.037 0.00 0.00 0.00 3.18
950 955 8.593679 TGTGTATATATATCTGGGTTCCTGTTG 58.406 37.037 0.00 0.00 0.00 3.33
951 956 8.736097 TGTGTATATATATCTGGGTTCCTGTT 57.264 34.615 0.00 0.00 0.00 3.16
1025 1037 6.145048 CCAATTGCTTGCAGACTAAAGAAAAG 59.855 38.462 0.00 0.00 0.00 2.27
1033 1045 1.176527 GCCCAATTGCTTGCAGACTA 58.823 50.000 0.00 0.00 0.00 2.59
1390 1405 2.111384 TCAGATCTGGGCCAGAACTAC 58.889 52.381 36.61 26.93 44.04 2.73
1394 1409 1.900351 CGTCAGATCTGGGCCAGAA 59.100 57.895 37.86 20.52 44.04 3.02
1419 1434 1.369209 CTGCACACGCCAGAAAACG 60.369 57.895 0.00 0.00 37.32 3.60
1713 1729 1.067425 TCCACAGACAAACGTATCCGG 60.067 52.381 0.00 0.00 38.78 5.14
1715 1731 3.596214 ACATCCACAGACAAACGTATCC 58.404 45.455 0.00 0.00 0.00 2.59
1719 1735 2.354510 CACAACATCCACAGACAAACGT 59.645 45.455 0.00 0.00 0.00 3.99
1723 1739 0.943673 CGCACAACATCCACAGACAA 59.056 50.000 0.00 0.00 0.00 3.18
1727 1743 1.081906 GCACGCACAACATCCACAG 60.082 57.895 0.00 0.00 0.00 3.66
1734 1750 2.548787 CGAATCGCACGCACAACA 59.451 55.556 0.00 0.00 0.00 3.33
1745 1761 1.056750 GTTTCACGACGGCGAATCG 59.943 57.895 22.49 16.74 45.17 3.34
1753 1769 1.269621 ACAAGGGAGAGTTTCACGACG 60.270 52.381 0.00 0.00 33.09 5.12
1763 1779 0.911769 TGCCATACCACAAGGGAGAG 59.088 55.000 0.00 0.00 41.15 3.20
1768 1784 2.102420 TCTACGATGCCATACCACAAGG 59.898 50.000 0.00 0.00 42.21 3.61
1788 1804 3.742433 ACCCATTCGATCTCACAGATC 57.258 47.619 3.74 3.74 45.84 2.75
1805 1821 1.534729 CCAGTTCTGCCAAGTAACCC 58.465 55.000 0.00 0.00 0.00 4.11
1816 1832 4.012374 ACACATAATTGGAGCCAGTTCTG 58.988 43.478 0.17 4.83 0.00 3.02
1824 1840 5.965334 CGAACATAACACACATAATTGGAGC 59.035 40.000 0.00 0.00 0.00 4.70
1837 1853 4.860907 ACCGAATAGACACGAACATAACAC 59.139 41.667 0.00 0.00 0.00 3.32
1842 1858 4.157289 ACACTACCGAATAGACACGAACAT 59.843 41.667 0.00 0.00 34.65 2.71
1850 1866 5.175856 GCATCAATCACACTACCGAATAGAC 59.824 44.000 1.19 0.00 34.65 2.59
1857 1873 2.349580 CACTGCATCAATCACACTACCG 59.650 50.000 0.00 0.00 0.00 4.02
1860 1876 3.599343 GACCACTGCATCAATCACACTA 58.401 45.455 0.00 0.00 0.00 2.74
1873 1889 1.271926 ACCCAAACATAGGACCACTGC 60.272 52.381 0.00 0.00 0.00 4.40
1875 1891 4.172807 TCTAACCCAAACATAGGACCACT 58.827 43.478 0.00 0.00 0.00 4.00
1881 1897 7.645058 ATGACAATTCTAACCCAAACATAGG 57.355 36.000 0.00 0.00 0.00 2.57
1891 1907 6.443792 ACGAACCAAAATGACAATTCTAACC 58.556 36.000 0.00 0.00 0.00 2.85
1892 1908 7.924103 AACGAACCAAAATGACAATTCTAAC 57.076 32.000 0.00 0.00 0.00 2.34
1894 1910 8.191446 TGAAAACGAACCAAAATGACAATTCTA 58.809 29.630 0.00 0.00 0.00 2.10
1943 1959 2.665537 GAGTCAATTCAGTGAGCACTCG 59.334 50.000 0.00 0.00 40.20 4.18
1944 1960 3.924144 AGAGTCAATTCAGTGAGCACTC 58.076 45.455 0.00 11.90 40.20 3.51
1946 1962 4.624882 CACTAGAGTCAATTCAGTGAGCAC 59.375 45.833 0.00 0.00 39.13 4.40
1948 1964 4.180057 CCACTAGAGTCAATTCAGTGAGC 58.820 47.826 0.00 0.00 39.13 4.26
1956 1972 2.567615 ACGGAAGCCACTAGAGTCAATT 59.432 45.455 0.00 0.00 0.00 2.32
2006 2022 2.812358 ATCGGCTCCAAACCAAAAAC 57.188 45.000 0.00 0.00 0.00 2.43
2007 2023 3.828875 AAATCGGCTCCAAACCAAAAA 57.171 38.095 0.00 0.00 0.00 1.94
2008 2024 3.828875 AAAATCGGCTCCAAACCAAAA 57.171 38.095 0.00 0.00 0.00 2.44
2009 2025 3.462021 CAAAAATCGGCTCCAAACCAAA 58.538 40.909 0.00 0.00 0.00 3.28
2049 2065 2.460669 TGTGAGAGGCTAAGAGCATGA 58.539 47.619 0.00 0.00 44.75 3.07
2120 2144 4.097361 GACCAACCGGGCTCCTCC 62.097 72.222 6.32 0.00 42.05 4.30
2129 2153 1.700523 TACGAAATCACGACCAACCG 58.299 50.000 0.00 0.00 37.03 4.44
2132 2156 2.060284 CGGTTACGAAATCACGACCAA 58.940 47.619 0.00 0.00 44.60 3.67
2140 2165 2.665052 GTCAGTGACCGGTTACGAAATC 59.335 50.000 22.31 9.87 44.60 2.17
2227 2259 9.259832 AGATGATGCATATACTACTTATGGTGA 57.740 33.333 0.00 0.00 0.00 4.02
2238 2270 6.269538 ACACAGAAGGAGATGATGCATATACT 59.730 38.462 0.00 0.00 25.91 2.12
2251 2283 5.436175 TGAAACATTTGACACAGAAGGAGA 58.564 37.500 0.00 0.00 0.00 3.71
2258 2290 7.306167 GCTGTTACAATGAAACATTTGACACAG 60.306 37.037 0.00 0.00 38.28 3.66
2403 2435 1.529438 CTTCTAAACGCAGGCGAACAA 59.471 47.619 21.62 4.68 42.83 2.83
2405 2437 1.136336 CACTTCTAAACGCAGGCGAAC 60.136 52.381 21.62 0.00 42.83 3.95
2406 2438 1.144969 CACTTCTAAACGCAGGCGAA 58.855 50.000 21.62 2.58 42.83 4.70
2408 2440 1.132640 GCACTTCTAAACGCAGGCG 59.867 57.895 12.71 12.71 46.03 5.52
2448 2481 5.695851 AGCAGATCAAACCAACTGTTTAG 57.304 39.130 0.00 0.00 45.35 1.85
2452 2485 5.376625 TCTAAAGCAGATCAAACCAACTGT 58.623 37.500 0.00 0.00 33.57 3.55
2486 2519 6.419413 TCAAAACAGCGTGAATAATGAAAACC 59.581 34.615 0.00 0.00 0.00 3.27
2495 2528 6.371271 TCAAGATGATCAAAACAGCGTGAATA 59.629 34.615 0.00 0.00 38.60 1.75
2499 2532 4.153986 GTCAAGATGATCAAAACAGCGTG 58.846 43.478 0.00 0.00 35.33 5.34
2513 2546 7.325338 GTCACTGAATGAAACATTGTCAAGATG 59.675 37.037 1.64 0.00 39.72 2.90
2536 2569 8.375506 CAATTTTATATAGGGTAGAGCAGGTCA 58.624 37.037 1.66 0.00 0.00 4.02
2610 2654 4.339748 TGGTGCATAAAATACTGCTTCCA 58.660 39.130 0.00 0.00 39.11 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.