>input_sequence_70313
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--------------------------------------------CAAACAGCAATA-------CGAAAGTTGGTCCCTTT
TCTTTAGTCTGCAAGCAATTGGGCTCACTGAAGCCCAAATTGGTCCATTTTCTTCAGTCTGCAACCCCAGGAGGCCCATC
CAAGAAAGCAGCAGACTT--GTCTCATTA-AACACGCATCGTCCATCCACATCGTCAGACACGAGCAAACGCACCTCCAC
CTTCTGCCTCCCACCTCTCCGGCGAGATCTCTCTCTCCGCCCCGCGCCGCAGCCAGCCATGGACGCCGTGGACTCCGTGG
TCGACCCGCTCCGGGAGTTCGCCAAGGACAGCGTTCGCCTCGTCAAGCGCTGCCACAAGCCCGACCGAAAGGGTAAGGAC
CCGGCGATCTCCTCCGGCGCATCGGATCCGCCGCCGCGGCGGTCGTAGTTCTGGCCCAGATCTGACGCCGTATCGTTTTC
TGGCGTGTGCAGAGTTCACCAAGGTGGCCATTCGGACGGCCATCGGGTTCGTCGTCATGGGCTTCGTCGGGTTCTTCGTC
AAGCTCATCTTCATCCCCATCAACAACATCATCGTCGGGTCCGGCTGATCTCGT-CTCCGCAGGTACTTCTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTGTGCGCCCGTTGTCCGGATACGTTTGTCTGTGGAT----------
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>chr6D_1_TraesCS6D01G140600
AGTCACGTGTAATTTTATTCAAACTCGGCAACCATTATGGGTACAGATG---CTTTGGATCATAGACCCAAAAAA-TTAC
ATAATGGCTCATGTTTCTAAGAATTACAATGAAATCTCTTGATGGCTTTATTCTTTGTGGTGACAATCCTTGCAACATGA
ATTACTACCCAGGCTTCAACAAAGATAATGCGGTTAGTCTGAAGTCGTGGCACTGCCATCCGTATACCTGCATAAACTTA
ACTACCTTAAAAGGTTTCTGAAGCTCTATGAGCTGCCCTACGTCTAAAAATATGGGAAGTTGTGAGTGTGGAACGTTCTT
GGTCCGGGGACAACCCCTAGTAATATAGGTCGTCGAACCACAAACTCTTTACCAAGATGTCAGATAAGCACACCAAACCA
CAAGAGATCATACAAACAAAAGCAGCAGACACTAACACAAATCCGTGTGAACGCATCTGCGAAGACATAAATCCAACTTC
CGCAAGATCAGACCTGCGTAGGAAAGACATCTCTAGCTGTGATACTACCTGATAAGGCATCATCACAATAGAAAAAACTA
AGTAACTTTATTCTCACCGGTATTGCACCCTCCGCAAGAACATAAAATACCATAAAAATCGTACTTGAAAACTTTTAAAC
ATGCCTGGAAGGATATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCCTC
TCTTCTTCTCATACGGCTTCCAACTGCTACGTTTGTTAACGCGCCAATACTTGATAACTGCTTGTGCTCCCTGGAATATT
GTCATTTCCAAGGAACCCAGTTTTCTTTTTGAGGGACAGTAACCCAGATTTTTTTAGTTTTTTTTTTCGAGAATCAACAG
GAACCCAGATATATATACACAATAAAATTGGGCGCATTGAAGCCCAAACAGCAATA-------CGAAAGTTGGTCCCTTT
TCTTTAGTCTGCAAGCAATTGGGCTCACTGAAGCCCAAATTGGTCCATTTTCTTCAGTCTGCAACCCCAGGAGGCCCATC
CAAGAAAGCAGCAGACTT--GTCTCATTA-AACACGCATCGTCCATCCACATCGTCAGACACGAGCAAACGCACCTCCAC
CTTCTGCCTCCCACCTCTCCGGCGAGATCTCTCTCTCCGCCCCGCGCCGCAGCCAGCCATGGACGCCGTGGACTCCGTGG
TCGACCCGCTCCGGGAGTTCGCCAAGGACAGCGTTCGCCTCGTCAAGCGCTGCCACAAGCCCGACCGAAAGGGTAAGGAC
CCGGCGATCTCCTCCGGCGCATCGGATCCGCCGCCGCGGCGGTCGTAGTTCTGGCCCAGATCTGACGCCGTATCGTTTTC
TGGCGTGTGCAGAGTTCACCAAGGTGGCCATTCGGACGGCCATCGGGTTCGTCGTCATGGGCTTCGTCGGGTTCTTCGTC
AAGCTCATCTTCATCCCCATCAACAACATCATCGTCGGGTCCGGCTGATCTCGT-CTCCGCAGGTACTTCTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTGTGCGCCCGTTGTCCGGATACGTTTGTCTGTGGATGTTGTGCGTG
CGATTCGCCGTCGTGAAACTCTCCCTTGTGGTATGGCATCGTAGATCTGTGAGATCGAATGGGTTACTTGGCAGAACTGG
CTCCAATTATGTGTGTTATGTTCGTGTCTATTCGGTAGTGTGATTGATGCAGTGGTCCTATGTTTGGGTTAGAATTGTCA
TTTTGGTTCGTTTTCACCAGGGTGCCATAGTTTTGAGACGAGTGCTCACTGAATTGACTCTAGTGGCTTCCGTGATTTCC
ATTTTTGTGTGCTAGAGTAGTGTTTTTGGTTTGGAGCCGATTTTTGGGCTCTGGCCGGGTATTCTCATGCTCTTAGCCTC
TCACAAGTTAC-----TTACCTTACCA---GCATTGAAGCCTAGAGGTGCGAGTTACTTGGTTGGAGGAGCCCGGTT-GG
TCGTGATTTCGTAACCGGTCACTGACCGGGCCATCTGCCTGGACGTATAGGAGGGCATTTGAGGAGCCCGGCTGTAGATG
-------CCCTAAGGGAGTCACCATAAGTAGTATATGCATCATCTCCTTCTGTGTCAAATGTTTCATTGTAACAGCCAGT
GCAAACTTGAACAATGTGTGCTTATATTTAACTATCCATACACAGGTAGTTATTTTCTTTATTCTATATACTCAATTCTT
GATGAAATTAAATGCCTCTATTTGTGCCTTTTTTTTGTTC-GCCTGCGTTTAGAAGTGCAAACTTCCAAGCTAATATCCT
CTAAACAGTTGGTTTGATCTGCTTTAGAGGCTTACTGTGGTTTTCATTATTCACGCTGTTTTGATCATCTTGACAATGTT
TCATTCAGTGACCTGCTCTACCCTATATAAAATTGCAAGGTAG-----------AACCATGGTGATGATAAGTTAGGCTT
GTGTGCCTGCATGTGGAAGCAGTATTTTATGCACCAGGTCCTTTTAAATAACCGTATGCTGATATTTTCAAGTATTCATG
TGATCACAGTCAACGACATCCATCTGATATATCAGAAGAATGTGTGCCTCCTTATATT
>chr6B_3
--TCACTTGTAATTTTATTCAAACTCAACAACCATTATGGGTGCAAATGCTACTTTGGATCACAGACCCAAATTTTTTAC
AGAATGGCTCATGTTTCTAAGAATTACAATGAAATCTCTTGATGGCTTTATTCTTTGTGGTGACTATCCTTGCAACATGA
ATTACTACCCAGGCTTCAACAAAGATAATGCGGCCAGTCTGAAGGGCCAGCACCGCCACCCGTATACCTGCATGAACTTG
ACTACCTTGAAAGGTTTCTAAAGCTCTATGAGCCGCCCTACATCTAAAAACATGGGAAGTTGTGAGTGTGGAACGTGCTT
GGTCCGGGGACGATCCCTAGTAATATAGGTCGTCGAACCACAAAATCTTTACCAAGATGTCAGATAAGCACACGAAACAA
CAAGAGATCATATAAACAAAAACACCTGGCACTAAC--------------------------------------------
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-------------------------ACAAACTCATCATATCAATGTGAGCGCAT-CTGCGAAGACATAAATCCAACTTCC
GCAAGATT------------------------------------------------------------------------
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--------GGACCTGCGTAGGCAAGACATCTCCAGCACTATGATACTACCTGATAAGGCATCATCA--------------
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>chr6A_953
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----------------------------------------------------------------------------ACAG
GAACCCAGATATAGATACACAATAAAATTGGGCTCACTGAAGCCCAAATAGTAATGCGATAGTCGAAAGTTGGTCCATTT
TCTTCAGTCTGCAAGCAATTGGGCCCACTGAAGCCCAAATTGGTCCGTTTTCTTCAGTCTGCAAGCCCAGGAGGCCCATC
TAAGAAAGCAGCAGACTT--GTCTCATTA-AACACGCATCGTCCATCCACATCGTCAGACACGAGCAAACCCACCTCCAC
CTTCTG-CTCCCACCTCTCCGGCGAGATCTCCCTCCT--CCCCGCGCCGCAGCCAGCCATGGACGCCGTGGACTCCGTGG
TCGACCCGCTCCGGGAGTTCGCCAAGGACAGCGTCCGCCTCGTCAAGCGCTGCCACAAGCCCGACCGAAAGGGTAAGGAC
A-------------CGGCGCATCGGATCCGCCGACGCGGTGGTCTTAGCTCCGGCCCAGATCTGACGCCGTATGGTTTTC
TGGCGTGTGTAGAGTTCACCAAGGTGGCCATTCGGACGGCCATCGGGTTCGTCGTCATGGGCTTCGTCGGGTTCTTCGTC
AAGCTCATCTTCATCCCCATCAACAACATCATCGTCGGGTCCGGCTGATTTGGTCCTCCGCAGGTACTTCTTCGCTCCCC
GCACCTCCCTCCGATCTGGGATCTAGTTTCTTCGTCTGC-----------------------------------------
-----------------------------AATTCTGTGCGCCCGTTGTTCTGATGCGTGTGTTTGTGGACGTTGTGCGTG
GGATTCGCTGTCGTGAAATTCTCTCTTGTGGTATGGCATCGTACATCTGTGAGATCGAATCGGTTACTTGGTAGAACTGA
CTCCAATTATGTTTGTTCTGTTCGTCTCTATTAGGCAGTGTGATTGATCCTGTGGTGCTATGTTTGTATGAGAATTGTCA
TTTTGGTTCGTTTTCACCAGGGTGCCATAGTTTTGAGATAATTACTCACTGGATTGACTCTAGTGGCTTCCGTGATTTCC
ATTTTTGTGTGCTAGAGTAGTTAC-TTGGTTTGGAGCCGATTTTGGGGCTCTGGCCGGGTATTCACATGCTCTTAGCCTC
TCACAAGTTACAACGTTTACCTTACCAACAGCATTGAAGCCTAGAGGTGCGAGTTACTTGGTTTGAGGAGCCTGGCTGGG
TCGTTATTTCGTAACCGGTCACTGACCGGGCCATCTGCCTGGACGTATAGGGGGGCATTTGAGGAGCCCGGCTGTAGATG
CCCTAGCCCCTAAGGGAGCCACTATAAGTTGTATATGCATCAGCTCCTTTTGTGTCAAATGTTTCATTGTAACAGCCAGT
GCAAACTTGAACAATGTGTGCTTATATTTAACTATCAATACACTGGTAGTTATTTTCTTTATTCTATATACTCAGTTCTT
GATGAAATTAAATGCCTCTATTTGTGCCTTTTTTGTTGTTTGCCTGCGTTTAGAAGTGCAAACTTCCAAGCTAATATCCT
TTAAGCAGTTGGTTTGATCTGCTTTAGAGGCTTACTGTAGTTTTCATAATTTACGCTGTTTTGATTATCTTGACAATGTT
TCATTCAGGGACCTGCTCTACCCTATATAAAATTGCGAGGTAGAACCATGGTGAAACCATGGTGATGATAAGTTAGGCTT
GTGTGCCTGCATGCGGAAGCAGTATTTTATGCACCAGGTCCTTTTAAATAACCATATGCTAACATTTTCAAGTATTCATG
TGATCACAGTCAATGACATCCATCTGATATATCAGAAGAATGTGTGCCTCCTTATATT
>chr6B_953
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----------------------------------------------------------------------------ACAG
GAACCCAGATATATATACACAATAAAATTGGGCGCATTGAAGCCCAAACAGCAATA-------CGAAAGTTGGTCTATTT
TCTTCAGTCTGCAAGCAATTGGGCTCACTGAAGCCCAAGTTGGTCCATTTTCATCAGTCTGCAAGCCCACGAGGCCCATC
CAAGAAAGCAGCAGACTTTTGTCTCATTAAAACACGCATCGTCCATCCACATCGTCAGACACGAGCAAACGCACCTCCAC
ATTCTGCCTCCCACCTCTCCGGCGAGATCTCCCTCCT--CCCCGCGCCGCAGCCAGCCATGGACGCCGTGGACTCCGTGG
TCGACCCGCTCCGGGAGTTCGCCAAGGACAGCGTTCGCCTCGTCAAGCGCTGCCACAAGCCCGACCGAAAGGGTAAGGAA
GGAC---------CCGGCGCATCGGATCCGCCGACGCGGCGGTCTTAGCTCTGGCCCAGATCTGACGCCGTATGGTTTGC
TGGCGTGTGCAGAGTTCACCAAGGTGGCCATTCGGACGGCCATCGGGTTCGTCGTCATGGGCTTCGTCGGGTTCTTCGTC
AAGCTCATCTTCATCCCCATCAACAACATCATCGTCGGGTCCGGCTGATCTCGT-CTCCGCAGGTGCTTCT---------
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>SNPs
SS----S-------------------SS--------------S--S----------------S---------SSS-----
-S--------------------------------------------------------------S---------------
---------------------------------SS---------SSSSS----S----S--------------S-----S
--------S----------S-------------S-------S--------S-------------------------S---
-----------S-S------------------------------S----------------------------S----S-
------------S--------S--S-S-S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
----------------------------------------------------------------------------S---
----S-----------------------------------------------------------S---------------
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-------------------------------S---SSSS-----------------------------------------
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SSSSSSSSSSSSS--------------------S----------S---S------------------------S------
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-----------------------------------------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-S---S---S---S------S----------
S-------S---------S----S-------------------S----------------S----------S-------S
------------S----S-------S------S--S------------S-S-----S---------SS-S----------
--------------------------------------SS-S-S-------S----------------------------
---------------------SSSS-------------------S-------------------S---------------
---------------------------------------------------------------S--------S--S----
----S----------------------------------------------S----------------------------
------------------S---S------S------------S------S------------------------------
------------------------------------S------S------------------------------S-----
----------------------------------S-SS-S----------------------------------------
S---S---------------------------------S--------S---S-------------S--------------
--------S-----------------------------------------------------------------------
-------------S---------------------------------------S------S-S-----------------
-------------S--------------------------------------------
>forward_590
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----------TTCTCACCGGTATTGCACCC--------------------------------------------------
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>reverse_1779
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------------------CTCTCCCTTGTGGTATGGCA------------------------------------------
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