Multiple sequence alignment - TraesCS6D01G127100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G127100 chr6D 100.000 3892 0 0 1 3892 90921621 90925512 0.000000e+00 7188.0
1 TraesCS6D01G127100 chr6D 75.668 374 71 18 2490 2853 25804292 25803929 6.690000e-38 169.0
2 TraesCS6D01G127100 chr6A 92.997 1985 83 24 1 1939 109134615 109136589 0.000000e+00 2844.0
3 TraesCS6D01G127100 chr6A 95.088 1588 55 14 1949 3522 109136569 109138147 0.000000e+00 2479.0
4 TraesCS6D01G127100 chr6A 92.481 133 8 1 3682 3814 558781291 558781421 5.130000e-44 189.0
5 TraesCS6D01G127100 chr6A 74.314 401 83 18 2490 2880 23895934 23895544 6.740000e-33 152.0
6 TraesCS6D01G127100 chr6B 94.532 1591 42 23 1958 3522 173392587 173394158 0.000000e+00 2414.0
7 TraesCS6D01G127100 chr6B 92.626 1207 43 20 732 1931 173391419 173392586 0.000000e+00 1694.0
8 TraesCS6D01G127100 chr6B 93.509 570 27 5 1 564 173390773 173391338 0.000000e+00 839.0
9 TraesCS6D01G127100 chr6B 75.134 374 73 18 2490 2853 42004962 42004599 1.450000e-34 158.0
10 TraesCS6D01G127100 chr6B 90.476 84 8 0 3514 3597 173394714 173394797 1.140000e-20 111.0
11 TraesCS6D01G127100 chr7A 74.735 566 113 25 2330 2880 670946630 670946080 3.910000e-55 226.0
12 TraesCS6D01G127100 chr7A 77.171 403 71 17 1126 1517 516998099 516997707 8.470000e-52 215.0
13 TraesCS6D01G127100 chr7A 77.326 344 61 11 1177 1517 517414627 517414298 1.850000e-43 187.0
14 TraesCS6D01G127100 chr7A 74.023 512 103 24 2330 2829 516997596 516997103 8.590000e-42 182.0
15 TraesCS6D01G127100 chr7A 85.577 104 13 2 1128 1230 516990142 516990040 1.480000e-19 108.0
16 TraesCS6D01G127100 chr7A 81.333 75 14 0 2803 2877 497778459 497778533 1.170000e-05 62.1
17 TraesCS6D01G127100 chr1B 84.937 239 12 6 3674 3890 675986078 675985842 1.820000e-53 220.0
18 TraesCS6D01G127100 chr7D 84.848 198 30 0 1320 1517 478327891 478328088 2.370000e-47 200.0
19 TraesCS6D01G127100 chr7D 93.233 133 9 0 3682 3814 404393614 404393482 3.070000e-46 196.0
20 TraesCS6D01G127100 chr7D 74.088 521 105 25 2320 2829 478328199 478328700 1.850000e-43 187.0
21 TraesCS6D01G127100 chr7D 82.828 198 34 0 1320 1517 478572286 478572089 1.110000e-40 178.0
22 TraesCS6D01G127100 chr7D 81.910 199 14 3 3713 3890 474002765 474002962 8.710000e-32 148.0
23 TraesCS6D01G127100 chr7D 85.088 114 15 2 1118 1230 478333382 478333494 8.840000e-22 115.0
24 TraesCS6D01G127100 chr7D 82.677 127 18 4 1103 1227 478370371 478370495 4.110000e-20 110.0
25 TraesCS6D01G127100 chr7D 100.000 28 0 0 3680 3707 80313056 80313083 7.000000e-03 52.8
26 TraesCS6D01G127100 chr7B 73.805 565 120 24 2330 2880 643295732 643295182 8.530000e-47 198.0
27 TraesCS6D01G127100 chr7B 83.838 198 32 0 1320 1517 503472874 503473071 5.130000e-44 189.0
28 TraesCS6D01G127100 chr7B 82.828 198 34 0 1320 1517 504244323 504244126 1.110000e-40 178.0
29 TraesCS6D01G127100 chr7B 74.396 414 87 17 1118 1517 503496278 503496686 4.020000e-35 159.0
30 TraesCS6D01G127100 chr7B 85.714 105 15 0 1126 1230 504244555 504244451 1.140000e-20 111.0
31 TraesCS6D01G127100 chr7B 85.294 102 15 0 1126 1227 503472643 503472744 5.320000e-19 106.0
32 TraesCS6D01G127100 chr3A 82.412 199 35 0 1319 1517 113922266 113922068 1.440000e-39 174.0
33 TraesCS6D01G127100 chr2D 71.769 588 130 32 2332 2895 602712046 602711471 2.440000e-27 134.0
34 TraesCS6D01G127100 chr2D 76.496 234 45 9 2330 2558 601983598 601983826 6.830000e-23 119.0
35 TraesCS6D01G127100 chr2B 72.917 432 89 24 2330 2744 733077365 733076945 1.470000e-24 124.0
36 TraesCS6D01G127100 chr2A 71.429 588 133 30 2330 2893 735350724 735350148 5.280000e-24 122.0
37 TraesCS6D01G127100 chr3B 90.566 53 4 1 495 547 703327244 703327295 6.980000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G127100 chr6D 90921621 90925512 3891 False 7188.0 7188 100.00000 1 3892 1 chr6D.!!$F1 3891
1 TraesCS6D01G127100 chr6A 109134615 109138147 3532 False 2661.5 2844 94.04250 1 3522 2 chr6A.!!$F2 3521
2 TraesCS6D01G127100 chr6B 173390773 173394797 4024 False 1264.5 2414 92.78575 1 3597 4 chr6B.!!$F1 3596
3 TraesCS6D01G127100 chr7A 670946080 670946630 550 True 226.0 226 74.73500 2330 2880 1 chr7A.!!$R3 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 780 0.67964 TGTCACGAATGGAATGGCCC 60.680 55.0 0.00 0.00 34.97 5.80 F
1818 1866 0.45826 GCTGCATGCATGATGTTGGA 59.542 50.0 30.64 3.57 42.31 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 2003 0.248012 CAGGGGTACACGTGCATGTA 59.752 55.0 17.22 3.35 33.85 2.29 R
3681 4336 0.034616 GCGGCTATTGGAGATGCTCT 59.965 55.0 0.00 0.00 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.119316 ACGTGCAAAGTGATAGAGAGAGG 60.119 47.826 0.00 0.00 0.00 3.69
25 26 3.194062 GTGCAAAGTGATAGAGAGAGGC 58.806 50.000 0.00 0.00 0.00 4.70
27 28 2.433970 GCAAAGTGATAGAGAGAGGCCT 59.566 50.000 3.86 3.86 0.00 5.19
30 31 3.678965 AGTGATAGAGAGAGGCCTCAA 57.321 47.619 33.90 14.12 41.87 3.02
32 33 2.627699 GTGATAGAGAGAGGCCTCAAGG 59.372 54.545 33.90 0.00 41.87 3.61
225 239 1.082117 ATACAAGCTACGTGGTGCGC 61.082 55.000 0.00 0.00 46.11 6.09
226 240 4.134187 CAAGCTACGTGGTGCGCG 62.134 66.667 0.00 0.00 46.11 6.86
242 261 1.286260 GCGCGGTACTGATAGGAGG 59.714 63.158 8.83 0.00 0.00 4.30
347 367 3.004106 GCCAGATGATATGCTTGGTGTTC 59.996 47.826 0.00 0.00 0.00 3.18
352 372 0.751643 ATATGCTTGGTGTTCCCGGC 60.752 55.000 0.00 0.00 35.15 6.13
463 483 4.330074 CAGAAGGCAAAGATAGTTACACCG 59.670 45.833 0.00 0.00 0.00 4.94
481 501 2.105134 ACCGAAATACACACTTCCACCA 59.895 45.455 0.00 0.00 0.00 4.17
514 538 4.086706 TCTAGATACATCCGTCTGAGCA 57.913 45.455 0.00 0.00 0.00 4.26
536 560 2.827322 TCAACTAATTTCGGACGGAGGA 59.173 45.455 0.00 0.00 0.00 3.71
546 572 1.887198 CGGACGGAGGAAGCAGTATAT 59.113 52.381 0.00 0.00 0.00 0.86
658 684 0.881118 ATCATTTTCTGTTGGCGCGT 59.119 45.000 8.43 0.00 0.00 6.01
673 699 1.799121 GCGTCCGTAAGACCGTGAC 60.799 63.158 0.00 0.00 43.08 3.67
698 729 8.319146 ACATAATGTGGTACTAGGGTATAATGC 58.681 37.037 0.00 0.00 0.00 3.56
749 780 0.679640 TGTCACGAATGGAATGGCCC 60.680 55.000 0.00 0.00 34.97 5.80
1031 1069 3.386237 GCTGAGGAGAGCGGTGGT 61.386 66.667 0.00 0.00 0.00 4.16
1146 1184 0.984230 TGGAGTCCATTGTGAGGTCC 59.016 55.000 8.12 0.00 0.00 4.46
1252 1290 1.954382 GTCGCCAAAAGTTCCTTCCTT 59.046 47.619 0.00 0.00 0.00 3.36
1260 1298 5.703130 CCAAAAGTTCCTTCCTTCTACTCTG 59.297 44.000 0.00 0.00 0.00 3.35
1277 1315 3.967987 ACTCTGTTACCTCCATCCATACC 59.032 47.826 0.00 0.00 0.00 2.73
1286 1324 3.569491 CTCCATCCATACCCTGCAAATT 58.431 45.455 0.00 0.00 0.00 1.82
1294 1332 5.104151 TCCATACCCTGCAAATTGTCTCATA 60.104 40.000 0.00 0.00 0.00 2.15
1297 1335 5.121380 ACCCTGCAAATTGTCTCATATCT 57.879 39.130 0.00 0.00 0.00 1.98
1317 1355 0.683828 ATGTCAAATCCATGGCCGCA 60.684 50.000 6.96 0.33 0.00 5.69
1346 1384 3.112709 GACGGTTCGGTGCTGCTC 61.113 66.667 0.00 0.00 0.00 4.26
1367 1405 2.202324 GACTCGTCGACGCTGACC 60.202 66.667 32.19 18.38 39.60 4.02
1571 1613 4.515028 ACGATATCCCCGTGGAGATATA 57.485 45.455 3.21 0.00 42.67 0.86
1572 1614 5.063017 ACGATATCCCCGTGGAGATATAT 57.937 43.478 3.21 0.00 42.67 0.86
1623 1665 0.801067 CACCCGTACAGCGAACTAGC 60.801 60.000 0.00 0.00 44.77 3.42
1774 1822 3.387091 TGGGCTAGCCTCGCGAAA 61.387 61.111 32.18 7.68 36.10 3.46
1818 1866 0.458260 GCTGCATGCATGATGTTGGA 59.542 50.000 30.64 3.57 42.31 3.53
1931 1984 2.736721 ACACTGTGAATACATGCACGTC 59.263 45.455 15.86 0.00 37.83 4.34
1932 1985 2.995939 CACTGTGAATACATGCACGTCT 59.004 45.455 0.32 0.00 37.83 4.18
1933 1986 4.173256 CACTGTGAATACATGCACGTCTA 58.827 43.478 0.32 0.00 37.83 2.59
1934 1987 4.625311 CACTGTGAATACATGCACGTCTAA 59.375 41.667 0.32 0.00 37.83 2.10
1935 1988 4.625742 ACTGTGAATACATGCACGTCTAAC 59.374 41.667 0.00 0.00 37.83 2.34
1936 1989 3.930229 TGTGAATACATGCACGTCTAACC 59.070 43.478 0.00 0.00 37.83 2.85
1937 1990 3.308866 GTGAATACATGCACGTCTAACCC 59.691 47.826 0.00 0.00 0.00 4.11
1938 1991 3.196901 TGAATACATGCACGTCTAACCCT 59.803 43.478 0.00 0.00 0.00 4.34
1939 1992 2.953466 TACATGCACGTCTAACCCTC 57.047 50.000 0.00 0.00 0.00 4.30
1940 1993 0.973632 ACATGCACGTCTAACCCTCA 59.026 50.000 0.00 0.00 0.00 3.86
1941 1994 1.346395 ACATGCACGTCTAACCCTCAA 59.654 47.619 0.00 0.00 0.00 3.02
1942 1995 2.224426 ACATGCACGTCTAACCCTCAAA 60.224 45.455 0.00 0.00 0.00 2.69
1943 1996 2.623878 TGCACGTCTAACCCTCAAAA 57.376 45.000 0.00 0.00 0.00 2.44
1944 1997 2.920524 TGCACGTCTAACCCTCAAAAA 58.079 42.857 0.00 0.00 0.00 1.94
2006 2060 0.507358 GACTGAGACCACGCGTTTTC 59.493 55.000 10.22 9.15 0.00 2.29
2013 2067 4.624024 TGAGACCACGCGTTTTCTTAATAG 59.376 41.667 10.22 0.00 0.00 1.73
2046 2100 5.227569 ACAGATGTAGACATTTCACCACA 57.772 39.130 0.00 0.00 36.57 4.17
2066 2125 5.122554 CCACAACGTACTTGGCATAACATTA 59.877 40.000 0.00 0.00 33.66 1.90
2090 2149 9.817809 TTATCTCGATCTAGCTAAACAAACATT 57.182 29.630 0.00 0.00 0.00 2.71
2185 2257 6.661805 TGAAAGGAAACAAACTAAGTTCACCT 59.338 34.615 0.00 0.00 37.31 4.00
2930 3004 1.739338 CTCCTCGAGATTCGTGGGGG 61.739 65.000 15.71 8.58 46.83 5.40
3019 3100 0.036875 GGTGGAGTGTGAAGGAAGGG 59.963 60.000 0.00 0.00 0.00 3.95
3021 3102 1.420138 GTGGAGTGTGAAGGAAGGGAA 59.580 52.381 0.00 0.00 0.00 3.97
3383 3474 2.683867 CGGGTAGGAGTACAGTTCTCTG 59.316 54.545 7.10 0.00 46.18 3.35
3387 3478 4.339814 GGTAGGAGTACAGTTCTCTGGATG 59.660 50.000 7.10 0.00 45.14 3.51
3476 3567 0.607620 CCCGACCACAAAATGCCAAT 59.392 50.000 0.00 0.00 0.00 3.16
3486 3577 6.164876 CCACAAAATGCCAATCACTATGAAA 58.835 36.000 0.00 0.00 0.00 2.69
3536 4191 8.087982 TCAAACTATCAATCTAATTCCATCGC 57.912 34.615 0.00 0.00 0.00 4.58
3543 4198 5.296780 TCAATCTAATTCCATCGCTTGGTTC 59.703 40.000 4.43 0.00 46.52 3.62
3544 4199 3.541632 TCTAATTCCATCGCTTGGTTCC 58.458 45.455 4.43 0.00 46.52 3.62
3584 4239 6.600822 TCATTTCTCATGTTTCCCTCAAGATC 59.399 38.462 0.00 0.00 0.00 2.75
3585 4240 4.128925 TCTCATGTTTCCCTCAAGATCG 57.871 45.455 0.00 0.00 0.00 3.69
3589 4244 3.762407 TGTTTCCCTCAAGATCGTCAA 57.238 42.857 0.00 0.00 0.00 3.18
3612 4267 4.938575 AAATAGGTTACCATGGACACCA 57.061 40.909 28.24 18.73 38.19 4.17
3613 4268 5.466127 AAATAGGTTACCATGGACACCAT 57.534 39.130 28.24 19.69 46.37 3.55
3614 4269 5.466127 AATAGGTTACCATGGACACCATT 57.534 39.130 28.24 22.62 42.23 3.16
3615 4270 3.366052 AGGTTACCATGGACACCATTC 57.634 47.619 28.24 10.32 42.23 2.67
3616 4271 2.014128 GGTTACCATGGACACCATTCG 58.986 52.381 21.47 0.00 42.23 3.34
3617 4272 2.014128 GTTACCATGGACACCATTCGG 58.986 52.381 21.47 3.48 42.23 4.30
3619 4274 0.404040 ACCATGGACACCATTCGGTT 59.596 50.000 21.47 0.00 46.31 4.44
3620 4275 1.094785 CCATGGACACCATTCGGTTC 58.905 55.000 5.56 0.00 46.31 3.62
3621 4276 1.612991 CCATGGACACCATTCGGTTCA 60.613 52.381 5.56 0.00 46.31 3.18
3622 4277 2.368439 CATGGACACCATTCGGTTCAT 58.632 47.619 0.11 0.00 46.31 2.57
3623 4278 1.819928 TGGACACCATTCGGTTCATG 58.180 50.000 0.00 0.00 46.31 3.07
3624 4279 0.451783 GGACACCATTCGGTTCATGC 59.548 55.000 0.00 0.00 46.31 4.06
3625 4280 0.451783 GACACCATTCGGTTCATGCC 59.548 55.000 0.00 0.00 46.31 4.40
3626 4281 0.251121 ACACCATTCGGTTCATGCCA 60.251 50.000 0.00 0.00 46.31 4.92
3627 4282 0.887247 CACCATTCGGTTCATGCCAA 59.113 50.000 0.00 0.00 46.31 4.52
3628 4283 0.887933 ACCATTCGGTTCATGCCAAC 59.112 50.000 0.00 0.00 46.31 3.77
3629 4284 0.887247 CCATTCGGTTCATGCCAACA 59.113 50.000 0.32 0.00 0.00 3.33
3630 4285 1.271934 CCATTCGGTTCATGCCAACAA 59.728 47.619 0.32 0.00 0.00 2.83
3631 4286 2.327568 CATTCGGTTCATGCCAACAAC 58.672 47.619 0.32 0.00 0.00 3.32
3632 4287 0.309302 TTCGGTTCATGCCAACAACG 59.691 50.000 0.32 0.00 0.00 4.10
3633 4288 1.081509 CGGTTCATGCCAACAACGG 60.082 57.895 0.32 0.00 0.00 4.44
3634 4289 1.791103 CGGTTCATGCCAACAACGGT 61.791 55.000 0.32 0.00 0.00 4.83
3635 4290 0.318614 GGTTCATGCCAACAACGGTG 60.319 55.000 0.00 0.00 0.00 4.94
3636 4291 0.318614 GTTCATGCCAACAACGGTGG 60.319 55.000 4.97 0.00 0.00 4.61
3637 4292 0.753479 TTCATGCCAACAACGGTGGT 60.753 50.000 4.97 0.00 0.00 4.16
3638 4293 0.753479 TCATGCCAACAACGGTGGTT 60.753 50.000 4.97 0.00 36.63 3.67
3639 4294 0.103937 CATGCCAACAACGGTGGTTT 59.896 50.000 4.97 0.00 32.98 3.27
3640 4295 0.103937 ATGCCAACAACGGTGGTTTG 59.896 50.000 4.97 0.32 32.98 2.93
3641 4296 1.227118 GCCAACAACGGTGGTTTGG 60.227 57.895 16.47 16.47 37.19 3.28
3642 4297 1.439644 CCAACAACGGTGGTTTGGG 59.560 57.895 13.68 0.00 32.63 4.12
3643 4298 1.439644 CAACAACGGTGGTTTGGGG 59.560 57.895 4.97 0.00 32.98 4.96
3644 4299 1.758906 AACAACGGTGGTTTGGGGG 60.759 57.895 4.97 0.00 32.98 5.40
3659 4314 3.640407 GGGGGCACACTCTGCTGA 61.640 66.667 0.00 0.00 46.25 4.26
3660 4315 2.431683 GGGGCACACTCTGCTGAA 59.568 61.111 0.00 0.00 46.25 3.02
3661 4316 1.968540 GGGGCACACTCTGCTGAAC 60.969 63.158 0.00 0.00 46.25 3.18
3662 4317 2.320587 GGGCACACTCTGCTGAACG 61.321 63.158 0.00 0.00 46.25 3.95
3663 4318 1.300931 GGCACACTCTGCTGAACGA 60.301 57.895 0.00 0.00 46.25 3.85
3664 4319 1.287730 GGCACACTCTGCTGAACGAG 61.288 60.000 0.00 0.00 46.25 4.18
3665 4320 0.598680 GCACACTCTGCTGAACGAGT 60.599 55.000 0.00 0.00 43.33 4.18
3666 4321 1.335964 GCACACTCTGCTGAACGAGTA 60.336 52.381 0.00 0.00 43.33 2.59
3667 4322 2.672478 GCACACTCTGCTGAACGAGTAT 60.672 50.000 0.00 0.00 43.33 2.12
3668 4323 2.919859 CACACTCTGCTGAACGAGTATG 59.080 50.000 0.00 0.00 38.37 2.39
3669 4324 2.820197 ACACTCTGCTGAACGAGTATGA 59.180 45.455 0.00 0.00 38.37 2.15
3670 4325 3.119673 ACACTCTGCTGAACGAGTATGAG 60.120 47.826 0.00 0.00 38.37 2.90
3671 4326 3.085533 ACTCTGCTGAACGAGTATGAGT 58.914 45.455 0.00 0.00 38.63 3.41
3672 4327 3.127895 ACTCTGCTGAACGAGTATGAGTC 59.872 47.826 0.00 0.00 38.63 3.36
3673 4328 3.081804 TCTGCTGAACGAGTATGAGTCA 58.918 45.455 0.00 0.00 0.00 3.41
3674 4329 3.696548 TCTGCTGAACGAGTATGAGTCAT 59.303 43.478 11.12 11.12 0.00 3.06
3675 4330 4.881850 TCTGCTGAACGAGTATGAGTCATA 59.118 41.667 8.84 8.84 0.00 2.15
3676 4331 4.921547 TGCTGAACGAGTATGAGTCATAC 58.078 43.478 28.63 28.63 44.81 2.39
3700 4355 2.537863 GAGCATCTCCAATAGCCGC 58.462 57.895 0.00 0.00 0.00 6.53
3701 4356 1.287730 GAGCATCTCCAATAGCCGCG 61.288 60.000 0.00 0.00 0.00 6.46
3702 4357 2.959357 GCATCTCCAATAGCCGCGC 61.959 63.158 0.00 0.00 0.00 6.86
3703 4358 2.031163 ATCTCCAATAGCCGCGCC 59.969 61.111 0.00 0.00 0.00 6.53
3704 4359 2.807107 ATCTCCAATAGCCGCGCCA 61.807 57.895 0.00 0.00 0.00 5.69
3705 4360 2.324014 ATCTCCAATAGCCGCGCCAA 62.324 55.000 0.00 0.00 0.00 4.52
3706 4361 2.045829 TCCAATAGCCGCGCCAAA 60.046 55.556 0.00 0.00 0.00 3.28
3707 4362 2.102161 CCAATAGCCGCGCCAAAC 59.898 61.111 0.00 0.00 0.00 2.93
3708 4363 2.695759 CCAATAGCCGCGCCAAACA 61.696 57.895 0.00 0.00 0.00 2.83
3709 4364 1.211449 CAATAGCCGCGCCAAACAA 59.789 52.632 0.00 0.00 0.00 2.83
3710 4365 0.798009 CAATAGCCGCGCCAAACAAG 60.798 55.000 0.00 0.00 0.00 3.16
3711 4366 2.542211 AATAGCCGCGCCAAACAAGC 62.542 55.000 0.00 0.00 0.00 4.01
3728 4383 3.435915 CGTCACGCCGCAAAATTG 58.564 55.556 0.00 0.00 0.00 2.32
3756 4411 3.626244 CGCGCACGCAATCGGTAT 61.626 61.111 16.04 0.00 42.06 2.73
3757 4412 2.297195 CGCGCACGCAATCGGTATA 61.297 57.895 16.04 0.00 42.06 1.47
3758 4413 1.487231 GCGCACGCAATCGGTATAG 59.513 57.895 10.65 0.00 41.49 1.31
3759 4414 1.213094 GCGCACGCAATCGGTATAGT 61.213 55.000 10.65 0.00 41.49 2.12
3760 4415 0.502695 CGCACGCAATCGGTATAGTG 59.497 55.000 0.00 0.00 40.69 2.74
3761 4416 0.859232 GCACGCAATCGGTATAGTGG 59.141 55.000 0.66 0.00 40.69 4.00
3762 4417 0.859232 CACGCAATCGGTATAGTGGC 59.141 55.000 0.00 0.00 40.69 5.01
3763 4418 0.750850 ACGCAATCGGTATAGTGGCT 59.249 50.000 0.00 0.00 40.69 4.75
3764 4419 1.269621 ACGCAATCGGTATAGTGGCTC 60.270 52.381 0.00 0.00 40.69 4.70
3765 4420 1.000163 CGCAATCGGTATAGTGGCTCT 60.000 52.381 0.00 0.00 0.00 4.09
3766 4421 2.228103 CGCAATCGGTATAGTGGCTCTA 59.772 50.000 0.00 0.00 0.00 2.43
3767 4422 3.670895 CGCAATCGGTATAGTGGCTCTAG 60.671 52.174 2.48 0.00 31.67 2.43
3768 4423 3.839293 CAATCGGTATAGTGGCTCTAGC 58.161 50.000 2.48 0.00 41.14 3.42
3769 4424 1.520494 TCGGTATAGTGGCTCTAGCG 58.480 55.000 2.48 3.85 43.26 4.26
3770 4425 0.522180 CGGTATAGTGGCTCTAGCGG 59.478 60.000 2.48 0.00 43.26 5.52
3771 4426 0.889306 GGTATAGTGGCTCTAGCGGG 59.111 60.000 2.48 0.00 43.26 6.13
3772 4427 0.244178 GTATAGTGGCTCTAGCGGGC 59.756 60.000 2.48 2.95 43.26 6.13
3773 4428 1.241990 TATAGTGGCTCTAGCGGGCG 61.242 60.000 2.48 0.00 43.26 6.13
3802 4457 4.121227 CGCGCGCGGCATATGTAG 62.121 66.667 43.28 13.53 43.84 2.74
3803 4458 3.036084 GCGCGCGGCATATGTAGT 61.036 61.111 33.06 0.00 42.87 2.73
3804 4459 2.594962 GCGCGCGGCATATGTAGTT 61.595 57.895 33.06 0.00 42.87 2.24
3805 4460 1.487231 CGCGCGGCATATGTAGTTC 59.513 57.895 24.84 0.00 0.00 3.01
3806 4461 1.212455 CGCGCGGCATATGTAGTTCA 61.212 55.000 24.84 0.00 0.00 3.18
3807 4462 0.508641 GCGCGGCATATGTAGTTCAG 59.491 55.000 8.83 0.00 0.00 3.02
3808 4463 0.508641 CGCGGCATATGTAGTTCAGC 59.491 55.000 4.29 0.00 0.00 4.26
3809 4464 0.508641 GCGGCATATGTAGTTCAGCG 59.491 55.000 4.29 0.00 0.00 5.18
3810 4465 0.508641 CGGCATATGTAGTTCAGCGC 59.491 55.000 0.00 0.00 0.00 5.92
3811 4466 0.508641 GGCATATGTAGTTCAGCGCG 59.491 55.000 0.00 0.00 0.00 6.86
3812 4467 0.111089 GCATATGTAGTTCAGCGCGC 60.111 55.000 26.66 26.66 0.00 6.86
3813 4468 0.159554 CATATGTAGTTCAGCGCGCG 59.840 55.000 28.44 28.44 0.00 6.86
3814 4469 1.548973 ATATGTAGTTCAGCGCGCGC 61.549 55.000 45.10 45.10 42.33 6.86
3827 4482 2.648724 CGCGCCGCTTATTTGCTG 60.649 61.111 7.78 0.00 0.00 4.41
3828 4483 2.951227 GCGCCGCTTATTTGCTGC 60.951 61.111 0.00 0.00 39.28 5.25
3832 4487 2.278142 CGCTTATTTGCTGCGCCC 60.278 61.111 4.18 0.00 43.08 6.13
3833 4488 2.278142 GCTTATTTGCTGCGCCCG 60.278 61.111 4.18 0.00 0.00 6.13
3834 4489 2.278142 CTTATTTGCTGCGCCCGC 60.278 61.111 4.18 8.60 42.35 6.13
3835 4490 2.749839 TTATTTGCTGCGCCCGCT 60.750 55.556 17.83 2.93 42.51 5.52
3836 4491 2.652893 CTTATTTGCTGCGCCCGCTC 62.653 60.000 17.83 6.41 42.51 5.03
3851 4506 4.803426 CTCCCACGCGCTGGACTC 62.803 72.222 23.58 0.00 43.95 3.36
3853 4508 4.803426 CCCACGCGCTGGACTCTC 62.803 72.222 23.58 0.00 43.95 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.595463 TGGCAGTGTGGCTTGAGC 60.595 61.111 1.91 0.00 44.10 4.26
103 113 0.179158 TCACATGCATGCGTGATTGC 60.179 50.000 39.42 5.20 37.23 3.56
225 239 1.030457 AACCTCCTATCAGTACCGCG 58.970 55.000 0.00 0.00 0.00 6.46
226 240 2.483188 CCAAACCTCCTATCAGTACCGC 60.483 54.545 0.00 0.00 0.00 5.68
227 241 2.483188 GCCAAACCTCCTATCAGTACCG 60.483 54.545 0.00 0.00 0.00 4.02
463 483 3.374058 CGGATGGTGGAAGTGTGTATTTC 59.626 47.826 0.00 0.00 0.00 2.17
481 501 6.183360 CGGATGTATCTAGATTCATTCCGGAT 60.183 42.308 29.80 13.31 36.66 4.18
514 538 3.449737 TCCTCCGTCCGAAATTAGTTGAT 59.550 43.478 0.00 0.00 0.00 2.57
529 553 5.632118 TCTTCTATATACTGCTTCCTCCGT 58.368 41.667 0.00 0.00 0.00 4.69
536 560 8.312669 AGAACCAACTCTTCTATATACTGCTT 57.687 34.615 0.00 0.00 0.00 3.91
546 572 4.905456 TCCTTCCAAGAACCAACTCTTCTA 59.095 41.667 0.00 0.00 33.25 2.10
610 636 8.567285 ACCTAGAAAATGATCCTTACAAACAG 57.433 34.615 0.00 0.00 0.00 3.16
613 639 8.533657 TCGTACCTAGAAAATGATCCTTACAAA 58.466 33.333 0.00 0.00 0.00 2.83
658 684 3.444742 ACATTATGTCACGGTCTTACGGA 59.555 43.478 0.00 0.00 38.39 4.69
673 699 8.318412 TGCATTATACCCTAGTACCACATTATG 58.682 37.037 0.00 0.00 0.00 1.90
698 729 1.397343 GCTGCGATCCTATCATGCATG 59.603 52.381 21.07 21.07 34.66 4.06
764 795 0.510359 CTGCGCAAGTTGTGAGACTC 59.490 55.000 20.42 2.50 41.68 3.36
824 856 0.893727 ATTCCTCCGGTTGTTGCCAC 60.894 55.000 0.00 0.00 0.00 5.01
837 869 7.085116 CGTGAACTATATAGTGTCCATTCCTC 58.915 42.308 16.11 7.22 36.50 3.71
1051 1089 4.057428 GAGCAGCGAGGTGACGGT 62.057 66.667 6.46 0.00 44.63 4.83
1252 1290 4.603094 TGGATGGAGGTAACAGAGTAGA 57.397 45.455 0.00 0.00 41.41 2.59
1260 1298 2.224548 GCAGGGTATGGATGGAGGTAAC 60.225 54.545 0.00 0.00 0.00 2.50
1277 1315 7.443272 TGACATAGATATGAGACAATTTGCAGG 59.557 37.037 6.84 0.00 37.15 4.85
1286 1324 8.098912 CCATGGATTTGACATAGATATGAGACA 58.901 37.037 5.56 2.08 37.15 3.41
1294 1332 3.415212 CGGCCATGGATTTGACATAGAT 58.585 45.455 18.40 0.00 0.00 1.98
1297 1335 1.317613 GCGGCCATGGATTTGACATA 58.682 50.000 18.40 0.00 0.00 2.29
1334 1372 3.666253 TCGTCGAGCAGCACCGAA 61.666 61.111 10.87 0.00 36.50 4.30
1367 1405 4.814294 CCGGCGTTCTTCTCCCCG 62.814 72.222 6.01 0.00 38.71 5.73
1571 1613 7.758528 GGCGGACGTAAATAAACAGATCTATAT 59.241 37.037 0.00 0.00 0.00 0.86
1572 1614 7.040201 AGGCGGACGTAAATAAACAGATCTATA 60.040 37.037 0.00 0.00 0.00 1.31
1623 1665 6.042777 TCTGAAATAATAAGGCGACAGACAG 58.957 40.000 0.00 0.00 0.00 3.51
1624 1666 5.972935 TCTGAAATAATAAGGCGACAGACA 58.027 37.500 0.00 0.00 0.00 3.41
1625 1667 6.273825 TCTCTGAAATAATAAGGCGACAGAC 58.726 40.000 0.00 0.00 0.00 3.51
1626 1668 6.461648 CCTCTCTGAAATAATAAGGCGACAGA 60.462 42.308 0.00 0.00 0.00 3.41
1818 1866 7.992754 AATGCTAACTCAGAAGATCAAGTTT 57.007 32.000 0.00 0.00 34.09 2.66
1874 1927 4.743151 GCGTCGGTATGATGAAATGTCTAA 59.257 41.667 0.00 0.00 35.48 2.10
1876 1929 3.123804 GCGTCGGTATGATGAAATGTCT 58.876 45.455 0.00 0.00 35.48 3.41
1889 1942 1.372582 AATCTCTACGTGCGTCGGTA 58.627 50.000 0.00 0.00 44.69 4.02
1892 1945 2.525096 GTGTAAATCTCTACGTGCGTCG 59.475 50.000 0.00 0.00 46.00 5.12
1945 1998 3.191791 GGGGTACACGTGCATGTATTTTT 59.808 43.478 17.22 0.00 37.40 1.94
1946 1999 2.750712 GGGGTACACGTGCATGTATTTT 59.249 45.455 17.22 0.00 37.40 1.82
1947 2000 2.026636 AGGGGTACACGTGCATGTATTT 60.027 45.455 17.22 1.72 37.40 1.40
1948 2001 1.557832 AGGGGTACACGTGCATGTATT 59.442 47.619 17.22 4.38 37.40 1.89
1949 2002 1.134521 CAGGGGTACACGTGCATGTAT 60.135 52.381 17.22 2.35 37.40 2.29
1950 2003 0.248012 CAGGGGTACACGTGCATGTA 59.752 55.000 17.22 3.35 33.85 2.29
1951 2004 1.003839 CAGGGGTACACGTGCATGT 60.004 57.895 17.22 5.51 36.56 3.21
1952 2005 1.003839 ACAGGGGTACACGTGCATG 60.004 57.895 17.47 9.73 0.00 4.06
1953 2006 1.295423 GACAGGGGTACACGTGCAT 59.705 57.895 17.47 0.00 0.00 3.96
1954 2007 2.738480 GACAGGGGTACACGTGCA 59.262 61.111 17.47 0.00 0.00 4.57
1955 2008 2.431942 CGACAGGGGTACACGTGC 60.432 66.667 17.47 9.48 0.00 5.34
1956 2009 0.942410 CAACGACAGGGGTACACGTG 60.942 60.000 16.05 16.05 37.28 4.49
2006 2060 6.701841 ACATCTGTACCATGTTCGCTATTAAG 59.298 38.462 2.40 0.00 29.75 1.85
2013 2067 3.797256 GTCTACATCTGTACCATGTTCGC 59.203 47.826 11.65 1.71 35.95 4.70
2046 2100 6.200286 CGAGATAATGTTATGCCAAGTACGTT 59.800 38.462 0.00 0.00 0.00 3.99
2066 2125 7.254590 GCAATGTTTGTTTAGCTAGATCGAGAT 60.255 37.037 7.06 2.53 0.00 2.75
2090 2149 7.387673 TCTCAATTTATTTCAGACTTTCGAGCA 59.612 33.333 0.00 0.00 0.00 4.26
2121 2180 1.065418 ACTTAGCATGGGTGTGCCTAC 60.065 52.381 0.00 0.00 46.19 3.18
2249 2323 4.802876 AGTACGGATAGTAACTACGTGC 57.197 45.455 0.00 0.00 39.78 5.34
2250 2324 4.966366 GCAAGTACGGATAGTAACTACGTG 59.034 45.833 0.00 0.00 38.34 4.49
2251 2325 4.878397 AGCAAGTACGGATAGTAACTACGT 59.122 41.667 0.00 0.00 41.10 3.57
2252 2326 5.415415 AGCAAGTACGGATAGTAACTACG 57.585 43.478 0.00 0.00 37.02 3.51
2290 2364 5.905733 CGTCATCATCATGTGAACAAATAGC 59.094 40.000 0.00 0.00 40.97 2.97
3019 3100 2.415893 CCAAATCATGTCGTTGCCCTTC 60.416 50.000 0.00 0.00 0.00 3.46
3021 3102 1.176527 CCAAATCATGTCGTTGCCCT 58.823 50.000 0.00 0.00 0.00 5.19
3105 3189 4.024387 GTGGTGAGCAATCAAAACTTACGA 60.024 41.667 0.00 0.00 0.00 3.43
3106 3190 4.219033 GTGGTGAGCAATCAAAACTTACG 58.781 43.478 0.00 0.00 0.00 3.18
3107 3191 4.219033 CGTGGTGAGCAATCAAAACTTAC 58.781 43.478 0.00 0.00 0.00 2.34
3108 3192 3.252215 CCGTGGTGAGCAATCAAAACTTA 59.748 43.478 0.00 0.00 0.00 2.24
3383 3474 2.422093 GGTCAGTTGAAGATCCCCATCC 60.422 54.545 0.00 0.00 0.00 3.51
3387 3478 3.741388 CGTATGGTCAGTTGAAGATCCCC 60.741 52.174 0.00 0.00 0.00 4.81
3535 4190 6.525629 ACACATATGACTATAGGAACCAAGC 58.474 40.000 10.38 0.00 0.00 4.01
3536 4191 7.726216 TGACACATATGACTATAGGAACCAAG 58.274 38.462 10.38 0.00 0.00 3.61
3589 4244 5.646215 TGGTGTCCATGGTAACCTATTTTT 58.354 37.500 27.77 0.00 33.65 1.94
3597 4252 2.014128 CCGAATGGTGTCCATGGTAAC 58.986 52.381 12.58 11.10 44.40 2.50
3598 4253 2.411628 CCGAATGGTGTCCATGGTAA 57.588 50.000 12.58 0.00 44.40 2.85
3610 4265 0.887247 TGTTGGCATGAACCGAATGG 59.113 50.000 0.00 0.00 42.84 3.16
3611 4266 2.327568 GTTGTTGGCATGAACCGAATG 58.672 47.619 0.00 0.00 0.00 2.67
3612 4267 1.068610 CGTTGTTGGCATGAACCGAAT 60.069 47.619 0.00 0.00 0.00 3.34
3613 4268 0.309302 CGTTGTTGGCATGAACCGAA 59.691 50.000 0.00 0.00 0.00 4.30
3614 4269 1.511318 CCGTTGTTGGCATGAACCGA 61.511 55.000 0.00 0.00 0.00 4.69
3615 4270 1.081509 CCGTTGTTGGCATGAACCG 60.082 57.895 0.00 0.00 0.00 4.44
3616 4271 0.318614 CACCGTTGTTGGCATGAACC 60.319 55.000 0.00 0.00 0.00 3.62
3617 4272 0.318614 CCACCGTTGTTGGCATGAAC 60.319 55.000 0.00 0.00 0.00 3.18
3618 4273 0.753479 ACCACCGTTGTTGGCATGAA 60.753 50.000 0.00 0.00 0.00 2.57
3619 4274 0.753479 AACCACCGTTGTTGGCATGA 60.753 50.000 0.00 0.00 0.00 3.07
3620 4275 0.103937 AAACCACCGTTGTTGGCATG 59.896 50.000 0.00 0.00 30.72 4.06
3621 4276 0.103937 CAAACCACCGTTGTTGGCAT 59.896 50.000 0.00 0.00 30.72 4.40
3622 4277 1.513158 CAAACCACCGTTGTTGGCA 59.487 52.632 0.00 0.00 30.72 4.92
3623 4278 1.227118 CCAAACCACCGTTGTTGGC 60.227 57.895 0.00 0.00 30.72 4.52
3624 4279 1.439644 CCCAAACCACCGTTGTTGG 59.560 57.895 0.00 0.00 31.94 3.77
3625 4280 1.439644 CCCCAAACCACCGTTGTTG 59.560 57.895 0.00 0.00 30.72 3.33
3626 4281 1.758906 CCCCCAAACCACCGTTGTT 60.759 57.895 0.00 0.00 30.72 2.83
3627 4282 2.123640 CCCCCAAACCACCGTTGT 60.124 61.111 0.00 0.00 30.72 3.32
3647 4302 2.706555 TACTCGTTCAGCAGAGTGTG 57.293 50.000 8.20 0.00 46.07 3.82
3648 4303 2.820197 TCATACTCGTTCAGCAGAGTGT 59.180 45.455 8.20 0.00 46.07 3.55
3649 4304 3.119673 ACTCATACTCGTTCAGCAGAGTG 60.120 47.826 8.20 0.00 46.07 3.51
3651 4306 3.127721 TGACTCATACTCGTTCAGCAGAG 59.872 47.826 0.00 0.00 40.16 3.35
3652 4307 3.081804 TGACTCATACTCGTTCAGCAGA 58.918 45.455 0.00 0.00 0.00 4.26
3653 4308 3.494045 TGACTCATACTCGTTCAGCAG 57.506 47.619 0.00 0.00 0.00 4.24
3654 4309 4.921547 GTATGACTCATACTCGTTCAGCA 58.078 43.478 18.43 0.00 42.20 4.41
3665 4320 9.402320 GGAGATGCTCTTATAGTATGACTCATA 57.598 37.037 0.00 0.00 29.59 2.15
3666 4321 7.892771 TGGAGATGCTCTTATAGTATGACTCAT 59.107 37.037 0.00 0.00 29.59 2.90
3667 4322 7.234355 TGGAGATGCTCTTATAGTATGACTCA 58.766 38.462 0.00 0.00 29.59 3.41
3668 4323 7.695480 TGGAGATGCTCTTATAGTATGACTC 57.305 40.000 0.00 0.00 29.59 3.36
3669 4324 8.663209 ATTGGAGATGCTCTTATAGTATGACT 57.337 34.615 0.00 0.00 29.59 3.41
3671 4326 8.690884 GCTATTGGAGATGCTCTTATAGTATGA 58.309 37.037 0.21 0.00 32.28 2.15
3672 4327 7.925483 GGCTATTGGAGATGCTCTTATAGTATG 59.075 40.741 0.21 0.00 32.28 2.39
3673 4328 7.201866 CGGCTATTGGAGATGCTCTTATAGTAT 60.202 40.741 0.21 0.00 32.28 2.12
3674 4329 6.095580 CGGCTATTGGAGATGCTCTTATAGTA 59.904 42.308 0.21 0.00 32.28 1.82
3675 4330 5.105554 CGGCTATTGGAGATGCTCTTATAGT 60.106 44.000 0.21 0.00 32.28 2.12
3676 4331 5.347342 CGGCTATTGGAGATGCTCTTATAG 58.653 45.833 0.00 0.00 32.53 1.31
3677 4332 4.382040 GCGGCTATTGGAGATGCTCTTATA 60.382 45.833 0.00 0.00 0.00 0.98
3678 4333 3.618507 GCGGCTATTGGAGATGCTCTTAT 60.619 47.826 0.00 0.00 0.00 1.73
3679 4334 2.289072 GCGGCTATTGGAGATGCTCTTA 60.289 50.000 0.00 0.00 0.00 2.10
3680 4335 1.542108 GCGGCTATTGGAGATGCTCTT 60.542 52.381 0.00 0.00 0.00 2.85
3681 4336 0.034616 GCGGCTATTGGAGATGCTCT 59.965 55.000 0.00 0.00 0.00 4.09
3682 4337 1.287730 CGCGGCTATTGGAGATGCTC 61.288 60.000 0.00 0.00 0.00 4.26
3683 4338 1.301244 CGCGGCTATTGGAGATGCT 60.301 57.895 0.00 0.00 0.00 3.79
3684 4339 2.959357 GCGCGGCTATTGGAGATGC 61.959 63.158 8.83 0.00 0.00 3.91
3685 4340 2.320587 GGCGCGGCTATTGGAGATG 61.321 63.158 27.05 0.00 0.00 2.90
3686 4341 2.031163 GGCGCGGCTATTGGAGAT 59.969 61.111 27.05 0.00 0.00 2.75
3687 4342 2.529454 TTTGGCGCGGCTATTGGAGA 62.529 55.000 33.23 7.69 0.00 3.71
3688 4343 2.112198 TTTGGCGCGGCTATTGGAG 61.112 57.895 33.23 0.00 0.00 3.86
3689 4344 2.045829 TTTGGCGCGGCTATTGGA 60.046 55.556 33.23 9.38 0.00 3.53
3690 4345 2.102161 GTTTGGCGCGGCTATTGG 59.898 61.111 33.23 0.00 0.00 3.16
3691 4346 0.798009 CTTGTTTGGCGCGGCTATTG 60.798 55.000 33.23 14.34 0.00 1.90
3692 4347 1.506262 CTTGTTTGGCGCGGCTATT 59.494 52.632 33.23 0.00 0.00 1.73
3693 4348 3.051392 GCTTGTTTGGCGCGGCTAT 62.051 57.895 33.23 0.00 0.00 2.97
3694 4349 3.732892 GCTTGTTTGGCGCGGCTA 61.733 61.111 33.23 24.13 0.00 3.93
3711 4366 2.706123 GCAATTTTGCGGCGTGACG 61.706 57.895 9.37 0.00 45.11 4.35
3712 4367 3.146396 GCAATTTTGCGGCGTGAC 58.854 55.556 9.37 0.00 45.11 3.67
3739 4394 2.198246 CTATACCGATTGCGTGCGCG 62.198 60.000 16.86 16.86 45.51 6.86
3740 4395 1.213094 ACTATACCGATTGCGTGCGC 61.213 55.000 9.85 9.85 42.35 6.09
3741 4396 0.502695 CACTATACCGATTGCGTGCG 59.497 55.000 0.00 0.00 35.23 5.34
3742 4397 0.859232 CCACTATACCGATTGCGTGC 59.141 55.000 0.00 0.00 35.23 5.34
3743 4398 0.859232 GCCACTATACCGATTGCGTG 59.141 55.000 0.00 0.00 35.23 5.34
3744 4399 0.750850 AGCCACTATACCGATTGCGT 59.249 50.000 0.00 0.00 35.23 5.24
3745 4400 1.000163 AGAGCCACTATACCGATTGCG 60.000 52.381 0.00 0.00 37.24 4.85
3746 4401 2.821991 AGAGCCACTATACCGATTGC 57.178 50.000 0.00 0.00 0.00 3.56
3747 4402 3.670895 CGCTAGAGCCACTATACCGATTG 60.671 52.174 0.00 0.00 37.91 2.67
3748 4403 2.488545 CGCTAGAGCCACTATACCGATT 59.511 50.000 0.00 0.00 37.91 3.34
3749 4404 2.085320 CGCTAGAGCCACTATACCGAT 58.915 52.381 0.00 0.00 37.91 4.18
3750 4405 1.520494 CGCTAGAGCCACTATACCGA 58.480 55.000 0.00 0.00 37.91 4.69
3751 4406 0.522180 CCGCTAGAGCCACTATACCG 59.478 60.000 0.00 0.00 37.91 4.02
3752 4407 0.889306 CCCGCTAGAGCCACTATACC 59.111 60.000 0.00 0.00 37.91 2.73
3753 4408 0.244178 GCCCGCTAGAGCCACTATAC 59.756 60.000 0.00 0.00 37.91 1.47
3754 4409 1.241990 CGCCCGCTAGAGCCACTATA 61.242 60.000 0.00 0.00 37.91 1.31
3755 4410 2.565645 CGCCCGCTAGAGCCACTAT 61.566 63.158 0.00 0.00 37.91 2.12
3756 4411 3.217017 CGCCCGCTAGAGCCACTA 61.217 66.667 0.00 0.00 37.91 2.74
3785 4440 4.121227 CTACATATGCCGCGCGCG 62.121 66.667 43.73 43.73 42.08 6.86
3786 4441 2.480426 GAACTACATATGCCGCGCGC 62.480 60.000 27.36 23.91 38.31 6.86
3787 4442 1.212455 TGAACTACATATGCCGCGCG 61.212 55.000 25.67 25.67 0.00 6.86
3788 4443 0.508641 CTGAACTACATATGCCGCGC 59.491 55.000 0.00 0.00 0.00 6.86
3789 4444 0.508641 GCTGAACTACATATGCCGCG 59.491 55.000 1.58 0.00 0.00 6.46
3790 4445 0.508641 CGCTGAACTACATATGCCGC 59.491 55.000 1.58 0.00 0.00 6.53
3791 4446 0.508641 GCGCTGAACTACATATGCCG 59.491 55.000 0.00 0.00 0.00 5.69
3792 4447 0.508641 CGCGCTGAACTACATATGCC 59.491 55.000 5.56 0.00 0.00 4.40
3793 4448 0.111089 GCGCGCTGAACTACATATGC 60.111 55.000 26.67 0.00 0.00 3.14
3794 4449 0.159554 CGCGCGCTGAACTACATATG 59.840 55.000 30.48 4.24 0.00 1.78
3795 4450 1.548973 GCGCGCGCTGAACTACATAT 61.549 55.000 44.38 0.00 38.26 1.78
3796 4451 2.228241 GCGCGCGCTGAACTACATA 61.228 57.895 44.38 0.00 38.26 2.29
3797 4452 3.554692 GCGCGCGCTGAACTACAT 61.555 61.111 44.38 0.00 38.26 2.29
3810 4465 2.648724 CAGCAAATAAGCGGCGCG 60.649 61.111 27.59 12.27 40.15 6.86
3811 4466 2.951227 GCAGCAAATAAGCGGCGC 60.951 61.111 26.86 26.86 45.03 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.