Multiple sequence alignment - TraesCS6D01G097000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G097000 | chr6D | 100.000 | 4047 | 0 | 0 | 1 | 4047 | 60549412 | 60545366 | 0.000000e+00 | 7474.0 |
1 | TraesCS6D01G097000 | chr6D | 93.496 | 246 | 16 | 0 | 413 | 658 | 433583829 | 433583584 | 2.300000e-97 | 366.0 |
2 | TraesCS6D01G097000 | chr6A | 91.548 | 3431 | 176 | 51 | 655 | 4045 | 77539343 | 77535987 | 0.000000e+00 | 4625.0 |
3 | TraesCS6D01G097000 | chr6A | 96.413 | 223 | 8 | 0 | 1 | 223 | 77539729 | 77539507 | 6.390000e-98 | 368.0 |
4 | TraesCS6D01G097000 | chr6A | 95.604 | 182 | 6 | 1 | 235 | 414 | 77539524 | 77539343 | 1.420000e-74 | 291.0 |
5 | TraesCS6D01G097000 | chr6B | 94.499 | 2745 | 112 | 24 | 655 | 3376 | 134827033 | 134824305 | 0.000000e+00 | 4196.0 |
6 | TraesCS6D01G097000 | chr6B | 86.745 | 513 | 39 | 18 | 3546 | 4033 | 134824222 | 134823714 | 9.890000e-151 | 544.0 |
7 | TraesCS6D01G097000 | chr6B | 91.573 | 178 | 13 | 2 | 239 | 414 | 134827925 | 134827748 | 1.120000e-60 | 244.0 |
8 | TraesCS6D01G097000 | chr6B | 94.891 | 137 | 7 | 0 | 655 | 791 | 134827734 | 134827598 | 8.810000e-52 | 215.0 |
9 | TraesCS6D01G097000 | chr6B | 85.955 | 178 | 21 | 3 | 240 | 414 | 134827209 | 134827033 | 1.920000e-43 | 187.0 |
10 | TraesCS6D01G097000 | chr3D | 91.254 | 869 | 58 | 13 | 1481 | 2339 | 135040702 | 135041562 | 0.000000e+00 | 1168.0 |
11 | TraesCS6D01G097000 | chr3D | 83.974 | 624 | 79 | 10 | 846 | 1449 | 135018799 | 135019421 | 2.710000e-161 | 579.0 |
12 | TraesCS6D01G097000 | chr3D | 93.173 | 249 | 16 | 1 | 409 | 657 | 25248972 | 25249219 | 8.270000e-97 | 364.0 |
13 | TraesCS6D01G097000 | chr3D | 93.416 | 243 | 16 | 0 | 413 | 655 | 537749544 | 537749302 | 1.070000e-95 | 361.0 |
14 | TraesCS6D01G097000 | chr3D | 82.353 | 170 | 27 | 2 | 247 | 414 | 135018480 | 135018648 | 1.170000e-30 | 145.0 |
15 | TraesCS6D01G097000 | chr3A | 90.132 | 760 | 53 | 14 | 1588 | 2339 | 149982968 | 149983713 | 0.000000e+00 | 968.0 |
16 | TraesCS6D01G097000 | chr3A | 83.681 | 766 | 104 | 8 | 846 | 1591 | 149962019 | 149962783 | 0.000000e+00 | 702.0 |
17 | TraesCS6D01G097000 | chr2D | 94.239 | 243 | 13 | 1 | 414 | 655 | 37913227 | 37912985 | 1.780000e-98 | 370.0 |
18 | TraesCS6D01G097000 | chr2D | 93.416 | 243 | 16 | 0 | 413 | 655 | 5312331 | 5312089 | 1.070000e-95 | 361.0 |
19 | TraesCS6D01G097000 | chr2D | 93.416 | 243 | 16 | 0 | 413 | 655 | 331384316 | 331384558 | 1.070000e-95 | 361.0 |
20 | TraesCS6D01G097000 | chr2D | 91.154 | 260 | 22 | 1 | 410 | 668 | 227026401 | 227026660 | 6.440000e-93 | 351.0 |
21 | TraesCS6D01G097000 | chr7D | 93.802 | 242 | 15 | 0 | 414 | 655 | 430435987 | 430435746 | 8.270000e-97 | 364.0 |
22 | TraesCS6D01G097000 | chr7D | 95.161 | 62 | 3 | 0 | 2538 | 2599 | 528026736 | 528026675 | 9.260000e-17 | 99.0 |
23 | TraesCS6D01G097000 | chr4D | 93.416 | 243 | 16 | 0 | 413 | 655 | 259245997 | 259245755 | 1.070000e-95 | 361.0 |
24 | TraesCS6D01G097000 | chr4D | 82.979 | 94 | 15 | 1 | 235 | 327 | 380282046 | 380281953 | 2.590000e-12 | 84.2 |
25 | TraesCS6D01G097000 | chr1D | 90.244 | 82 | 8 | 0 | 240 | 321 | 365984658 | 365984739 | 1.540000e-19 | 108.0 |
26 | TraesCS6D01G097000 | chr7B | 93.548 | 62 | 4 | 0 | 2538 | 2599 | 565054729 | 565054668 | 4.310000e-15 | 93.5 |
27 | TraesCS6D01G097000 | chr1A | 84.783 | 92 | 10 | 4 | 239 | 328 | 108760344 | 108760255 | 5.570000e-14 | 89.8 |
28 | TraesCS6D01G097000 | chr7A | 91.935 | 62 | 5 | 0 | 2538 | 2599 | 608204629 | 608204568 | 2.000000e-13 | 87.9 |
29 | TraesCS6D01G097000 | chr4B | 84.884 | 86 | 12 | 1 | 1971 | 2056 | 377800200 | 377800116 | 7.210000e-13 | 86.1 |
30 | TraesCS6D01G097000 | chr4B | 83.158 | 95 | 14 | 2 | 235 | 327 | 467460590 | 467460496 | 7.210000e-13 | 86.1 |
31 | TraesCS6D01G097000 | chr4A | 84.270 | 89 | 13 | 1 | 1968 | 2056 | 176539244 | 176539331 | 7.210000e-13 | 86.1 |
32 | TraesCS6D01G097000 | chr2B | 85.542 | 83 | 10 | 2 | 240 | 321 | 97435718 | 97435637 | 7.210000e-13 | 86.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G097000 | chr6D | 60545366 | 60549412 | 4046 | True | 7474.000000 | 7474 | 100.000000 | 1 | 4047 | 1 | chr6D.!!$R1 | 4046 |
1 | TraesCS6D01G097000 | chr6A | 77535987 | 77539729 | 3742 | True | 1761.333333 | 4625 | 94.521667 | 1 | 4045 | 3 | chr6A.!!$R1 | 4044 |
2 | TraesCS6D01G097000 | chr6B | 134823714 | 134827925 | 4211 | True | 1077.200000 | 4196 | 90.732600 | 239 | 4033 | 5 | chr6B.!!$R1 | 3794 |
3 | TraesCS6D01G097000 | chr3D | 135040702 | 135041562 | 860 | False | 1168.000000 | 1168 | 91.254000 | 1481 | 2339 | 1 | chr3D.!!$F2 | 858 |
4 | TraesCS6D01G097000 | chr3D | 135018480 | 135019421 | 941 | False | 362.000000 | 579 | 83.163500 | 247 | 1449 | 2 | chr3D.!!$F3 | 1202 |
5 | TraesCS6D01G097000 | chr3A | 149982968 | 149983713 | 745 | False | 968.000000 | 968 | 90.132000 | 1588 | 2339 | 1 | chr3A.!!$F2 | 751 |
6 | TraesCS6D01G097000 | chr3A | 149962019 | 149962783 | 764 | False | 702.000000 | 702 | 83.681000 | 846 | 1591 | 1 | chr3A.!!$F1 | 745 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
549 | 1267 | 0.252197 | ATACCCGCACTCCTTTCCAC | 59.748 | 55.0 | 0.0 | 0.0 | 0.00 | 4.02 | F |
1329 | 2070 | 0.537828 | TGCTGTTTGCTGCTGATCCA | 60.538 | 50.0 | 0.0 | 0.0 | 43.37 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1973 | 2724 | 1.001641 | CCTTGGGAGTTGCCTCTGG | 60.002 | 63.158 | 0.0 | 0.0 | 37.86 | 3.86 | R |
3272 | 4062 | 0.322816 | ACAGGGAGCAATGCGACATT | 60.323 | 50.000 | 0.0 | 0.0 | 0.00 | 2.71 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
98 | 99 | 9.124807 | GTCCCAAGTGAAAATTTATAAAGTTCG | 57.875 | 33.333 | 11.01 | 2.23 | 0.00 | 3.95 |
101 | 102 | 8.837059 | CCAAGTGAAAATTTATAAAGTTCGACG | 58.163 | 33.333 | 11.01 | 0.00 | 0.00 | 5.12 |
198 | 199 | 7.757526 | TCTAACGGTATTGATTTGGAATTGTG | 58.242 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
208 | 209 | 8.760103 | TTGATTTGGAATTGTGTATGTCAATG | 57.240 | 30.769 | 0.00 | 0.00 | 35.95 | 2.82 |
226 | 227 | 8.073467 | TGTCAATGATTTCTTTATAAACCCCC | 57.927 | 34.615 | 0.00 | 0.00 | 0.00 | 5.40 |
227 | 228 | 7.898636 | TGTCAATGATTTCTTTATAAACCCCCT | 59.101 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
228 | 229 | 8.414003 | GTCAATGATTTCTTTATAAACCCCCTC | 58.586 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
229 | 230 | 8.119246 | TCAATGATTTCTTTATAAACCCCCTCA | 58.881 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
230 | 231 | 8.757877 | CAATGATTTCTTTATAAACCCCCTCAA | 58.242 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
231 | 232 | 8.909423 | ATGATTTCTTTATAAACCCCCTCAAA | 57.091 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
232 | 233 | 8.728596 | TGATTTCTTTATAAACCCCCTCAAAA | 57.271 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
233 | 234 | 9.160412 | TGATTTCTTTATAAACCCCCTCAAAAA | 57.840 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
328 | 1044 | 3.447944 | AGAAACGGAGGGAGTGTCTATTC | 59.552 | 47.826 | 0.00 | 0.00 | 34.62 | 1.75 |
374 | 1092 | 8.791327 | ATTTCATGGTTTGTGAAAAGAAGTTT | 57.209 | 26.923 | 5.52 | 0.00 | 45.50 | 2.66 |
375 | 1093 | 8.614469 | TTTCATGGTTTGTGAAAAGAAGTTTT | 57.386 | 26.923 | 0.00 | 0.00 | 41.23 | 2.43 |
408 | 1126 | 4.550831 | CGTAGCAATCATAGGAAGCAAACG | 60.551 | 45.833 | 13.91 | 13.91 | 35.60 | 3.60 |
414 | 1132 | 6.369005 | CAATCATAGGAAGCAAACGATCATC | 58.631 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
415 | 1133 | 5.282055 | TCATAGGAAGCAAACGATCATCT | 57.718 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
416 | 1134 | 5.292765 | TCATAGGAAGCAAACGATCATCTC | 58.707 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
417 | 1135 | 3.902881 | AGGAAGCAAACGATCATCTCT | 57.097 | 42.857 | 0.00 | 0.00 | 0.00 | 3.10 |
418 | 1136 | 6.265422 | TCATAGGAAGCAAACGATCATCTCTA | 59.735 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
419 | 1137 | 4.688021 | AGGAAGCAAACGATCATCTCTAC | 58.312 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
420 | 1138 | 4.404073 | AGGAAGCAAACGATCATCTCTACT | 59.596 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
421 | 1139 | 4.742659 | GGAAGCAAACGATCATCTCTACTC | 59.257 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
422 | 1140 | 5.451242 | GGAAGCAAACGATCATCTCTACTCT | 60.451 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
423 | 1141 | 5.590530 | AGCAAACGATCATCTCTACTCTT | 57.409 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
424 | 1142 | 6.701145 | AGCAAACGATCATCTCTACTCTTA | 57.299 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
425 | 1143 | 7.283625 | AGCAAACGATCATCTCTACTCTTAT | 57.716 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
426 | 1144 | 8.397575 | AGCAAACGATCATCTCTACTCTTATA | 57.602 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
427 | 1145 | 8.851145 | AGCAAACGATCATCTCTACTCTTATAA | 58.149 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
428 | 1146 | 9.464714 | GCAAACGATCATCTCTACTCTTATAAA | 57.535 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
449 | 1167 | 5.410355 | AAAAATGGAGTTGGTGATGATGG | 57.590 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
450 | 1168 | 3.744940 | AATGGAGTTGGTGATGATGGT | 57.255 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
451 | 1169 | 2.495155 | TGGAGTTGGTGATGATGGTG | 57.505 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
452 | 1170 | 1.704628 | TGGAGTTGGTGATGATGGTGT | 59.295 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
453 | 1171 | 2.086869 | GGAGTTGGTGATGATGGTGTG | 58.913 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
454 | 1172 | 1.470098 | GAGTTGGTGATGATGGTGTGC | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
455 | 1173 | 0.527565 | GTTGGTGATGATGGTGTGCC | 59.472 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
456 | 1174 | 0.405198 | TTGGTGATGATGGTGTGCCT | 59.595 | 50.000 | 0.00 | 0.00 | 35.27 | 4.75 |
457 | 1175 | 0.322726 | TGGTGATGATGGTGTGCCTG | 60.323 | 55.000 | 0.00 | 0.00 | 35.27 | 4.85 |
458 | 1176 | 1.660560 | GGTGATGATGGTGTGCCTGC | 61.661 | 60.000 | 0.00 | 0.00 | 35.27 | 4.85 |
459 | 1177 | 1.378911 | TGATGATGGTGTGCCTGCC | 60.379 | 57.895 | 0.00 | 0.00 | 35.27 | 4.85 |
460 | 1178 | 1.378911 | GATGATGGTGTGCCTGCCA | 60.379 | 57.895 | 0.00 | 0.00 | 39.33 | 4.92 |
463 | 1181 | 2.043652 | ATGGTGTGCCTGCCATCC | 60.044 | 61.111 | 0.00 | 0.00 | 41.24 | 3.51 |
464 | 1182 | 3.667217 | ATGGTGTGCCTGCCATCCC | 62.667 | 63.158 | 0.00 | 0.00 | 41.24 | 3.85 |
471 | 1189 | 2.440796 | CCTGCCATCCCGCAACAT | 60.441 | 61.111 | 0.00 | 0.00 | 38.56 | 2.71 |
472 | 1190 | 1.152984 | CCTGCCATCCCGCAACATA | 60.153 | 57.895 | 0.00 | 0.00 | 38.56 | 2.29 |
473 | 1191 | 1.168407 | CCTGCCATCCCGCAACATAG | 61.168 | 60.000 | 0.00 | 0.00 | 38.56 | 2.23 |
474 | 1192 | 1.152984 | TGCCATCCCGCAACATAGG | 60.153 | 57.895 | 0.00 | 0.00 | 35.32 | 2.57 |
475 | 1193 | 2.555547 | GCCATCCCGCAACATAGGC | 61.556 | 63.158 | 0.00 | 0.00 | 0.00 | 3.93 |
476 | 1194 | 1.898574 | CCATCCCGCAACATAGGCC | 60.899 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
477 | 1195 | 2.111043 | ATCCCGCAACATAGGCCG | 59.889 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
478 | 1196 | 2.742116 | ATCCCGCAACATAGGCCGT | 61.742 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
479 | 1197 | 2.660258 | ATCCCGCAACATAGGCCGTC | 62.660 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
480 | 1198 | 2.895372 | CCGCAACATAGGCCGTCC | 60.895 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
481 | 1199 | 3.261951 | CGCAACATAGGCCGTCCG | 61.262 | 66.667 | 0.00 | 0.00 | 37.47 | 4.79 |
482 | 1200 | 2.185867 | GCAACATAGGCCGTCCGA | 59.814 | 61.111 | 0.00 | 0.00 | 37.47 | 4.55 |
483 | 1201 | 1.227556 | GCAACATAGGCCGTCCGAT | 60.228 | 57.895 | 0.00 | 0.00 | 37.47 | 4.18 |
484 | 1202 | 1.222115 | GCAACATAGGCCGTCCGATC | 61.222 | 60.000 | 0.00 | 0.00 | 37.47 | 3.69 |
485 | 1203 | 0.389391 | CAACATAGGCCGTCCGATCT | 59.611 | 55.000 | 0.00 | 0.00 | 37.47 | 2.75 |
486 | 1204 | 1.611977 | CAACATAGGCCGTCCGATCTA | 59.388 | 52.381 | 0.00 | 0.00 | 37.47 | 1.98 |
487 | 1205 | 2.217510 | ACATAGGCCGTCCGATCTAT | 57.782 | 50.000 | 0.00 | 0.00 | 37.47 | 1.98 |
488 | 1206 | 3.361281 | ACATAGGCCGTCCGATCTATA | 57.639 | 47.619 | 0.00 | 0.00 | 37.47 | 1.31 |
489 | 1207 | 3.899726 | ACATAGGCCGTCCGATCTATAT | 58.100 | 45.455 | 0.00 | 0.00 | 37.47 | 0.86 |
490 | 1208 | 3.884091 | ACATAGGCCGTCCGATCTATATC | 59.116 | 47.826 | 0.00 | 0.00 | 37.47 | 1.63 |
491 | 1209 | 2.810870 | AGGCCGTCCGATCTATATCT | 57.189 | 50.000 | 0.00 | 0.00 | 37.47 | 1.98 |
492 | 1210 | 2.370349 | AGGCCGTCCGATCTATATCTG | 58.630 | 52.381 | 0.00 | 0.00 | 37.47 | 2.90 |
493 | 1211 | 2.026169 | AGGCCGTCCGATCTATATCTGA | 60.026 | 50.000 | 0.00 | 0.00 | 37.47 | 3.27 |
494 | 1212 | 2.952978 | GGCCGTCCGATCTATATCTGAT | 59.047 | 50.000 | 0.00 | 0.00 | 29.47 | 2.90 |
495 | 1213 | 3.243234 | GGCCGTCCGATCTATATCTGATG | 60.243 | 52.174 | 0.00 | 0.00 | 34.08 | 3.07 |
496 | 1214 | 4.560136 | CCGTCCGATCTATATCTGATGG | 57.440 | 50.000 | 0.00 | 6.44 | 42.54 | 3.51 |
500 | 1218 | 7.127917 | CGTCCGATCTATATCTGATGGATAG | 57.872 | 44.000 | 0.00 | 1.10 | 39.89 | 2.08 |
501 | 1219 | 6.148645 | CGTCCGATCTATATCTGATGGATAGG | 59.851 | 46.154 | 15.64 | 15.64 | 39.89 | 2.57 |
502 | 1220 | 7.227873 | GTCCGATCTATATCTGATGGATAGGA | 58.772 | 42.308 | 18.10 | 18.10 | 39.89 | 2.94 |
503 | 1221 | 7.721842 | GTCCGATCTATATCTGATGGATAGGAA | 59.278 | 40.741 | 20.88 | 11.19 | 38.93 | 3.36 |
504 | 1222 | 7.941790 | TCCGATCTATATCTGATGGATAGGAAG | 59.058 | 40.741 | 18.92 | 8.36 | 39.89 | 3.46 |
505 | 1223 | 7.176515 | CCGATCTATATCTGATGGATAGGAAGG | 59.823 | 44.444 | 16.23 | 9.96 | 39.89 | 3.46 |
506 | 1224 | 7.941790 | CGATCTATATCTGATGGATAGGAAGGA | 59.058 | 40.741 | 0.00 | 0.00 | 39.89 | 3.36 |
507 | 1225 | 9.653516 | GATCTATATCTGATGGATAGGAAGGAA | 57.346 | 37.037 | 0.00 | 0.00 | 39.89 | 3.36 |
509 | 1227 | 9.261035 | TCTATATCTGATGGATAGGAAGGAAAC | 57.739 | 37.037 | 0.00 | 0.00 | 39.89 | 2.78 |
510 | 1228 | 9.265862 | CTATATCTGATGGATAGGAAGGAAACT | 57.734 | 37.037 | 0.00 | 0.00 | 40.65 | 2.66 |
512 | 1230 | 9.796242 | ATATCTGATGGATAGGAAGGAAACTAT | 57.204 | 33.333 | 0.00 | 0.00 | 39.04 | 2.12 |
513 | 1231 | 7.308450 | TCTGATGGATAGGAAGGAAACTATG | 57.692 | 40.000 | 0.00 | 0.00 | 42.68 | 2.23 |
514 | 1232 | 7.075797 | TCTGATGGATAGGAAGGAAACTATGA | 58.924 | 38.462 | 0.00 | 0.00 | 42.68 | 2.15 |
515 | 1233 | 7.015682 | TCTGATGGATAGGAAGGAAACTATGAC | 59.984 | 40.741 | 0.00 | 0.00 | 42.68 | 3.06 |
516 | 1234 | 6.615316 | TGATGGATAGGAAGGAAACTATGACA | 59.385 | 38.462 | 0.00 | 0.00 | 42.68 | 3.58 |
517 | 1235 | 6.884472 | TGGATAGGAAGGAAACTATGACAA | 57.116 | 37.500 | 0.00 | 0.00 | 42.68 | 3.18 |
518 | 1236 | 7.451731 | TGGATAGGAAGGAAACTATGACAAT | 57.548 | 36.000 | 0.00 | 0.00 | 42.68 | 2.71 |
519 | 1237 | 7.872138 | TGGATAGGAAGGAAACTATGACAATT | 58.128 | 34.615 | 0.00 | 0.00 | 42.68 | 2.32 |
520 | 1238 | 8.336235 | TGGATAGGAAGGAAACTATGACAATTT | 58.664 | 33.333 | 0.00 | 0.00 | 42.68 | 1.82 |
521 | 1239 | 9.190317 | GGATAGGAAGGAAACTATGACAATTTT | 57.810 | 33.333 | 0.00 | 0.00 | 42.68 | 1.82 |
523 | 1241 | 6.691508 | AGGAAGGAAACTATGACAATTTTGC | 58.308 | 36.000 | 0.00 | 0.00 | 42.68 | 3.68 |
524 | 1242 | 6.267471 | AGGAAGGAAACTATGACAATTTTGCA | 59.733 | 34.615 | 0.00 | 0.00 | 42.68 | 4.08 |
525 | 1243 | 6.928492 | GGAAGGAAACTATGACAATTTTGCAA | 59.072 | 34.615 | 0.00 | 0.00 | 42.68 | 4.08 |
526 | 1244 | 7.440856 | GGAAGGAAACTATGACAATTTTGCAAA | 59.559 | 33.333 | 8.05 | 8.05 | 42.68 | 3.68 |
527 | 1245 | 8.729805 | AAGGAAACTATGACAATTTTGCAAAA | 57.270 | 26.923 | 25.76 | 25.76 | 42.68 | 2.44 |
528 | 1246 | 8.729805 | AGGAAACTATGACAATTTTGCAAAAA | 57.270 | 26.923 | 27.10 | 11.87 | 40.61 | 1.94 |
529 | 1247 | 8.829612 | AGGAAACTATGACAATTTTGCAAAAAG | 58.170 | 29.630 | 27.10 | 22.99 | 40.61 | 2.27 |
530 | 1248 | 8.825745 | GGAAACTATGACAATTTTGCAAAAAGA | 58.174 | 29.630 | 27.10 | 6.60 | 0.00 | 2.52 |
534 | 1252 | 9.423061 | ACTATGACAATTTTGCAAAAAGATACC | 57.577 | 29.630 | 27.10 | 14.67 | 0.00 | 2.73 |
535 | 1253 | 7.671495 | ATGACAATTTTGCAAAAAGATACCC | 57.329 | 32.000 | 27.10 | 13.32 | 0.00 | 3.69 |
536 | 1254 | 5.694006 | TGACAATTTTGCAAAAAGATACCCG | 59.306 | 36.000 | 27.10 | 12.09 | 0.00 | 5.28 |
537 | 1255 | 4.450757 | ACAATTTTGCAAAAAGATACCCGC | 59.549 | 37.500 | 27.10 | 0.00 | 0.00 | 6.13 |
538 | 1256 | 3.735237 | TTTTGCAAAAAGATACCCGCA | 57.265 | 38.095 | 21.94 | 0.00 | 0.00 | 5.69 |
539 | 1257 | 2.715737 | TTGCAAAAAGATACCCGCAC | 57.284 | 45.000 | 0.00 | 0.00 | 0.00 | 5.34 |
540 | 1258 | 1.904287 | TGCAAAAAGATACCCGCACT | 58.096 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
541 | 1259 | 1.810151 | TGCAAAAAGATACCCGCACTC | 59.190 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
542 | 1260 | 1.132453 | GCAAAAAGATACCCGCACTCC | 59.868 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
543 | 1261 | 2.711542 | CAAAAAGATACCCGCACTCCT | 58.288 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
544 | 1262 | 3.081804 | CAAAAAGATACCCGCACTCCTT | 58.918 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
545 | 1263 | 3.434940 | AAAAGATACCCGCACTCCTTT | 57.565 | 42.857 | 0.00 | 0.00 | 0.00 | 3.11 |
546 | 1264 | 2.693267 | AAGATACCCGCACTCCTTTC | 57.307 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
547 | 1265 | 0.831307 | AGATACCCGCACTCCTTTCC | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
548 | 1266 | 0.539986 | GATACCCGCACTCCTTTCCA | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
549 | 1267 | 0.252197 | ATACCCGCACTCCTTTCCAC | 59.748 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
550 | 1268 | 1.122632 | TACCCGCACTCCTTTCCACA | 61.123 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
551 | 1269 | 1.002134 | CCCGCACTCCTTTCCACAT | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 3.21 |
552 | 1270 | 0.609131 | CCCGCACTCCTTTCCACATT | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
553 | 1271 | 1.247567 | CCGCACTCCTTTCCACATTT | 58.752 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
554 | 1272 | 1.068333 | CCGCACTCCTTTCCACATTTG | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
555 | 1273 | 1.666888 | CGCACTCCTTTCCACATTTGC | 60.667 | 52.381 | 0.00 | 0.00 | 0.00 | 3.68 |
556 | 1274 | 1.340889 | GCACTCCTTTCCACATTTGCA | 59.659 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
557 | 1275 | 2.608752 | GCACTCCTTTCCACATTTGCAG | 60.609 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
558 | 1276 | 2.886523 | CACTCCTTTCCACATTTGCAGA | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
559 | 1277 | 3.508793 | CACTCCTTTCCACATTTGCAGAT | 59.491 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
560 | 1278 | 4.701651 | CACTCCTTTCCACATTTGCAGATA | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
561 | 1279 | 5.183713 | CACTCCTTTCCACATTTGCAGATAA | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
562 | 1280 | 5.416952 | ACTCCTTTCCACATTTGCAGATAAG | 59.583 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
563 | 1281 | 4.706476 | TCCTTTCCACATTTGCAGATAAGG | 59.294 | 41.667 | 8.70 | 8.70 | 0.00 | 2.69 |
564 | 1282 | 4.427312 | CTTTCCACATTTGCAGATAAGGC | 58.573 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
565 | 1283 | 2.378038 | TCCACATTTGCAGATAAGGCC | 58.622 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
566 | 1284 | 2.025037 | TCCACATTTGCAGATAAGGCCT | 60.025 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
567 | 1285 | 2.762327 | CCACATTTGCAGATAAGGCCTT | 59.238 | 45.455 | 24.18 | 24.18 | 0.00 | 4.35 |
568 | 1286 | 3.181483 | CCACATTTGCAGATAAGGCCTTC | 60.181 | 47.826 | 24.49 | 9.18 | 0.00 | 3.46 |
569 | 1287 | 3.026694 | ACATTTGCAGATAAGGCCTTCC | 58.973 | 45.455 | 24.49 | 15.44 | 0.00 | 3.46 |
570 | 1288 | 2.143876 | TTTGCAGATAAGGCCTTCCC | 57.856 | 50.000 | 24.49 | 15.04 | 0.00 | 3.97 |
579 | 1297 | 3.987594 | AGGCCTTCCCTTGTTCATC | 57.012 | 52.632 | 0.00 | 0.00 | 43.06 | 2.92 |
580 | 1298 | 1.376649 | AGGCCTTCCCTTGTTCATCT | 58.623 | 50.000 | 0.00 | 0.00 | 43.06 | 2.90 |
581 | 1299 | 1.713078 | AGGCCTTCCCTTGTTCATCTT | 59.287 | 47.619 | 0.00 | 0.00 | 43.06 | 2.40 |
582 | 1300 | 2.110721 | AGGCCTTCCCTTGTTCATCTTT | 59.889 | 45.455 | 0.00 | 0.00 | 43.06 | 2.52 |
583 | 1301 | 3.333680 | AGGCCTTCCCTTGTTCATCTTTA | 59.666 | 43.478 | 0.00 | 0.00 | 43.06 | 1.85 |
584 | 1302 | 4.017130 | AGGCCTTCCCTTGTTCATCTTTAT | 60.017 | 41.667 | 0.00 | 0.00 | 43.06 | 1.40 |
585 | 1303 | 4.339530 | GGCCTTCCCTTGTTCATCTTTATC | 59.660 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
586 | 1304 | 5.196695 | GCCTTCCCTTGTTCATCTTTATCT | 58.803 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
587 | 1305 | 5.298026 | GCCTTCCCTTGTTCATCTTTATCTC | 59.702 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
588 | 1306 | 5.825151 | CCTTCCCTTGTTCATCTTTATCTCC | 59.175 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
589 | 1307 | 5.373812 | TCCCTTGTTCATCTTTATCTCCC | 57.626 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
590 | 1308 | 4.788075 | TCCCTTGTTCATCTTTATCTCCCA | 59.212 | 41.667 | 0.00 | 0.00 | 0.00 | 4.37 |
591 | 1309 | 5.252863 | TCCCTTGTTCATCTTTATCTCCCAA | 59.747 | 40.000 | 0.00 | 0.00 | 0.00 | 4.12 |
592 | 1310 | 5.951747 | CCCTTGTTCATCTTTATCTCCCAAA | 59.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
593 | 1311 | 6.437162 | CCCTTGTTCATCTTTATCTCCCAAAA | 59.563 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
594 | 1312 | 7.363268 | CCCTTGTTCATCTTTATCTCCCAAAAG | 60.363 | 40.741 | 0.00 | 0.00 | 34.65 | 2.27 |
595 | 1313 | 7.394359 | CCTTGTTCATCTTTATCTCCCAAAAGA | 59.606 | 37.037 | 0.46 | 0.46 | 43.72 | 2.52 |
597 | 1315 | 9.973661 | TTGTTCATCTTTATCTCCCAAAAGATA | 57.026 | 29.630 | 9.32 | 0.00 | 45.92 | 1.98 |
598 | 1316 | 9.973661 | TGTTCATCTTTATCTCCCAAAAGATAA | 57.026 | 29.630 | 9.32 | 2.94 | 45.92 | 1.75 |
628 | 1346 | 8.790718 | ACTCATATAAATGCATCTTGATGTTCC | 58.209 | 33.333 | 0.00 | 0.00 | 32.76 | 3.62 |
629 | 1347 | 7.809665 | TCATATAAATGCATCTTGATGTTCCG | 58.190 | 34.615 | 0.00 | 0.00 | 32.76 | 4.30 |
630 | 1348 | 7.445096 | TCATATAAATGCATCTTGATGTTCCGT | 59.555 | 33.333 | 0.00 | 0.00 | 32.76 | 4.69 |
631 | 1349 | 3.770263 | AATGCATCTTGATGTTCCGTG | 57.230 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
632 | 1350 | 0.804364 | TGCATCTTGATGTTCCGTGC | 59.196 | 50.000 | 11.61 | 0.00 | 0.00 | 5.34 |
633 | 1351 | 0.804364 | GCATCTTGATGTTCCGTGCA | 59.196 | 50.000 | 11.61 | 0.00 | 0.00 | 4.57 |
634 | 1352 | 1.199789 | GCATCTTGATGTTCCGTGCAA | 59.800 | 47.619 | 11.61 | 0.00 | 0.00 | 4.08 |
635 | 1353 | 2.159338 | GCATCTTGATGTTCCGTGCAAT | 60.159 | 45.455 | 11.61 | 0.00 | 0.00 | 3.56 |
636 | 1354 | 3.431856 | CATCTTGATGTTCCGTGCAATG | 58.568 | 45.455 | 0.00 | 0.00 | 0.00 | 2.82 |
637 | 1355 | 1.199789 | TCTTGATGTTCCGTGCAATGC | 59.800 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
638 | 1356 | 0.957362 | TTGATGTTCCGTGCAATGCA | 59.043 | 45.000 | 2.72 | 2.72 | 35.60 | 3.96 |
653 | 1371 | 3.414272 | GCACGGGCATCTTGCTAG | 58.586 | 61.111 | 3.77 | 0.00 | 44.28 | 3.42 |
654 | 1372 | 1.450312 | GCACGGGCATCTTGCTAGT | 60.450 | 57.895 | 3.77 | 0.00 | 44.28 | 2.57 |
679 | 1397 | 6.107901 | ACCTCTGAAATATGAGTGGCTATC | 57.892 | 41.667 | 0.00 | 0.00 | 0.00 | 2.08 |
773 | 1491 | 7.986704 | AGGTCAATCTGGATCATTCTATTGAT | 58.013 | 34.615 | 0.00 | 0.00 | 39.04 | 2.57 |
848 | 1569 | 4.223032 | TCCACTGGACAAGATTAGACTTCC | 59.777 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
852 | 1573 | 3.190874 | GGACAAGATTAGACTTCCTGCG | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
908 | 1630 | 6.403866 | TTGAAATACATTGTTTGACAGGCT | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 4.58 |
1329 | 2070 | 0.537828 | TGCTGTTTGCTGCTGATCCA | 60.538 | 50.000 | 0.00 | 0.00 | 43.37 | 3.41 |
1539 | 2280 | 5.359009 | TCGGTTAGATGTGAGTACCTTTAGG | 59.641 | 44.000 | 0.00 | 0.00 | 42.17 | 2.69 |
1761 | 2505 | 2.033602 | GTGGGGGTTCTCCGGTTG | 59.966 | 66.667 | 0.00 | 0.00 | 36.01 | 3.77 |
1765 | 2509 | 1.674651 | GGGGTTCTCCGGTTGAAGC | 60.675 | 63.158 | 23.55 | 23.55 | 40.10 | 3.86 |
1775 | 2519 | 1.841663 | CGGTTGAAGCCCAGTTGACG | 61.842 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1783 | 2527 | 0.602638 | GCCCAGTTGACGTCATCACA | 60.603 | 55.000 | 24.47 | 6.48 | 36.92 | 3.58 |
1896 | 2645 | 1.138464 | GACCGGAAAGTAGGGTGATCC | 59.862 | 57.143 | 9.46 | 0.00 | 33.28 | 3.36 |
1942 | 2693 | 8.812147 | AATTTTTCTTGAAAATAGAACCGTCC | 57.188 | 30.769 | 9.02 | 0.00 | 44.98 | 4.79 |
1943 | 2694 | 5.952526 | TTTCTTGAAAATAGAACCGTCCC | 57.047 | 39.130 | 0.00 | 0.00 | 31.68 | 4.46 |
1973 | 2724 | 9.722056 | GATGTTTTGTTCCATGTACATATCTTC | 57.278 | 33.333 | 8.32 | 0.00 | 0.00 | 2.87 |
2120 | 2871 | 8.934507 | TCATCACATTACGATGTTTATACACA | 57.065 | 30.769 | 0.00 | 0.00 | 43.92 | 3.72 |
2210 | 2962 | 5.701224 | ACAACTAAGGTGAAGGGAAAATCA | 58.299 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2291 | 3043 | 9.841295 | TCATTCATAATCTTGTCATTCTCATGA | 57.159 | 29.630 | 0.00 | 0.00 | 37.05 | 3.07 |
2389 | 3141 | 6.876257 | AGAGACCATGTTCAGAAGATAACAAC | 59.124 | 38.462 | 0.00 | 0.00 | 38.95 | 3.32 |
2422 | 3174 | 4.679662 | CATCTGGAATTGATTCTGGCAAC | 58.320 | 43.478 | 3.94 | 0.00 | 37.00 | 4.17 |
2489 | 3241 | 1.648116 | ATGAGGGGCATGCAAAAACT | 58.352 | 45.000 | 21.36 | 9.21 | 35.42 | 2.66 |
2501 | 3253 | 5.557514 | GCATGCAAAAACTGTGTCATCAAAG | 60.558 | 40.000 | 14.21 | 0.00 | 35.19 | 2.77 |
2545 | 3297 | 2.962421 | AGGAGTTTTCAAATGGCGGAAA | 59.038 | 40.909 | 0.00 | 0.00 | 0.00 | 3.13 |
2618 | 3373 | 7.179338 | AGAGGTAACAGTGTGATAAGAAGATGT | 59.821 | 37.037 | 0.00 | 0.00 | 41.41 | 3.06 |
2823 | 3587 | 2.353610 | GGCCATCAGGTGCAAAGGG | 61.354 | 63.158 | 0.00 | 0.00 | 37.19 | 3.95 |
2898 | 3662 | 4.985538 | ACAACAGAAGGCCAGAAAATCTA | 58.014 | 39.130 | 5.01 | 0.00 | 0.00 | 1.98 |
2903 | 3667 | 2.403252 | AGGCCAGAAAATCTACGGTG | 57.597 | 50.000 | 5.01 | 0.00 | 0.00 | 4.94 |
2949 | 3713 | 1.598130 | AACACCACTTCAGCTCCGC | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
3055 | 3821 | 6.169800 | TGAAAGTGAACCATGATGAACGATA | 58.830 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3154 | 3944 | 3.931907 | CCTTATGACAAGGTCCATCCA | 57.068 | 47.619 | 0.00 | 0.00 | 39.02 | 3.41 |
3155 | 3945 | 4.443978 | CCTTATGACAAGGTCCATCCAT | 57.556 | 45.455 | 0.00 | 0.00 | 39.02 | 3.41 |
3156 | 3946 | 4.796606 | CCTTATGACAAGGTCCATCCATT | 58.203 | 43.478 | 0.00 | 0.00 | 39.02 | 3.16 |
3157 | 3947 | 5.940617 | CCTTATGACAAGGTCCATCCATTA | 58.059 | 41.667 | 0.00 | 0.00 | 39.02 | 1.90 |
3158 | 3948 | 6.364701 | CCTTATGACAAGGTCCATCCATTAA | 58.635 | 40.000 | 0.00 | 0.00 | 39.02 | 1.40 |
3159 | 3949 | 7.006509 | CCTTATGACAAGGTCCATCCATTAAT | 58.993 | 38.462 | 0.00 | 0.00 | 39.02 | 1.40 |
3160 | 3950 | 7.040201 | CCTTATGACAAGGTCCATCCATTAATG | 60.040 | 40.741 | 8.58 | 8.58 | 39.02 | 1.90 |
3161 | 3951 | 3.953612 | TGACAAGGTCCATCCATTAATGC | 59.046 | 43.478 | 10.11 | 0.00 | 39.02 | 3.56 |
3162 | 3952 | 4.210331 | GACAAGGTCCATCCATTAATGCT | 58.790 | 43.478 | 10.11 | 0.00 | 39.02 | 3.79 |
3163 | 3953 | 3.956199 | ACAAGGTCCATCCATTAATGCTG | 59.044 | 43.478 | 10.11 | 9.17 | 39.02 | 4.41 |
3164 | 3954 | 4.209538 | CAAGGTCCATCCATTAATGCTGA | 58.790 | 43.478 | 10.11 | 3.51 | 39.02 | 4.26 |
3165 | 3955 | 4.524802 | AGGTCCATCCATTAATGCTGAA | 57.475 | 40.909 | 10.11 | 0.00 | 39.02 | 3.02 |
3166 | 3956 | 4.870636 | AGGTCCATCCATTAATGCTGAAA | 58.129 | 39.130 | 10.11 | 0.04 | 39.02 | 2.69 |
3167 | 3957 | 5.461327 | AGGTCCATCCATTAATGCTGAAAT | 58.539 | 37.500 | 10.11 | 0.00 | 39.02 | 2.17 |
3168 | 3958 | 6.613699 | AGGTCCATCCATTAATGCTGAAATA | 58.386 | 36.000 | 10.11 | 0.00 | 39.02 | 1.40 |
3169 | 3959 | 6.718454 | AGGTCCATCCATTAATGCTGAAATAG | 59.282 | 38.462 | 10.11 | 0.00 | 39.02 | 1.73 |
3170 | 3960 | 6.071728 | GGTCCATCCATTAATGCTGAAATAGG | 60.072 | 42.308 | 10.11 | 5.18 | 35.97 | 2.57 |
3171 | 3961 | 6.491403 | GTCCATCCATTAATGCTGAAATAGGT | 59.509 | 38.462 | 10.11 | 0.00 | 0.00 | 3.08 |
3420 | 4210 | 1.663739 | GCACTGGACACTACGGACA | 59.336 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
3446 | 4236 | 1.376683 | GGCATGCCTGGACGTTACA | 60.377 | 57.895 | 29.98 | 0.00 | 0.00 | 2.41 |
3468 | 4258 | 0.736325 | CGTCCTGAGCACCCTAAACG | 60.736 | 60.000 | 0.00 | 0.00 | 0.00 | 3.60 |
3472 | 4262 | 0.321653 | CTGAGCACCCTAAACGCCTT | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3473 | 4263 | 0.321298 | TGAGCACCCTAAACGCCTTC | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3474 | 4264 | 1.359459 | GAGCACCCTAAACGCCTTCG | 61.359 | 60.000 | 0.00 | 0.00 | 42.43 | 3.79 |
3519 | 4309 | 0.543749 | CAAAGGTAGCCAGGAGGGAG | 59.456 | 60.000 | 0.00 | 0.00 | 40.01 | 4.30 |
3521 | 4311 | 0.417841 | AAGGTAGCCAGGAGGGAGAA | 59.582 | 55.000 | 0.00 | 0.00 | 40.01 | 2.87 |
3522 | 4312 | 0.417841 | AGGTAGCCAGGAGGGAGAAA | 59.582 | 55.000 | 0.00 | 0.00 | 40.01 | 2.52 |
3541 | 4331 | 5.094387 | AGAAAAGGAATCAGGTGGTCTCTA | 58.906 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3575 | 4367 | 5.452636 | CCATCTAAGCCTCTAAGGAGTTGAC | 60.453 | 48.000 | 0.00 | 0.00 | 37.67 | 3.18 |
3619 | 4412 | 9.874205 | GAATTTGATGGAATGGAATAAGTTGAA | 57.126 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3620 | 4413 | 9.657419 | AATTTGATGGAATGGAATAAGTTGAAC | 57.343 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
3621 | 4414 | 6.773976 | TGATGGAATGGAATAAGTTGAACC | 57.226 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
3672 | 4467 | 3.708403 | AATGATGAGACCTGCACTTGA | 57.292 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
3801 | 4609 | 9.742144 | TTTACCTGTATTGCCTATCTACAAAAA | 57.258 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
3826 | 4634 | 1.333619 | TGTGCGGCTTTCTGAAAAGAC | 59.666 | 47.619 | 4.18 | 0.00 | 45.59 | 3.01 |
3843 | 4651 | 4.691860 | AAGACTTTCAAGAATGGATGCG | 57.308 | 40.909 | 0.00 | 0.00 | 0.00 | 4.73 |
3933 | 4748 | 4.624024 | CCTGATTGCAAATGTTGTCACATC | 59.376 | 41.667 | 1.71 | 0.00 | 43.34 | 3.06 |
3939 | 4754 | 4.084066 | TGCAAATGTTGTCACATCGTAGAC | 60.084 | 41.667 | 0.00 | 0.00 | 43.34 | 2.59 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
9 | 10 | 1.493022 | ACCCAGTGCCAAACTTGACTA | 59.507 | 47.619 | 0.00 | 0.00 | 36.83 | 2.59 |
161 | 162 | 6.097696 | TCAATACCGTTAGATTCATCACTGGA | 59.902 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
307 | 1023 | 3.447944 | AGAATAGACACTCCCTCCGTTTC | 59.552 | 47.826 | 0.00 | 0.00 | 0.00 | 2.78 |
374 | 1092 | 4.729227 | TGATTGCTACGGTCATGTCTAA | 57.271 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
375 | 1093 | 4.937201 | ATGATTGCTACGGTCATGTCTA | 57.063 | 40.909 | 0.00 | 0.00 | 31.75 | 2.59 |
427 | 1145 | 4.840115 | ACCATCATCACCAACTCCATTTTT | 59.160 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
428 | 1146 | 4.221262 | CACCATCATCACCAACTCCATTTT | 59.779 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
429 | 1147 | 3.765511 | CACCATCATCACCAACTCCATTT | 59.234 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
430 | 1148 | 3.245371 | ACACCATCATCACCAACTCCATT | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
431 | 1149 | 2.309755 | ACACCATCATCACCAACTCCAT | 59.690 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
432 | 1150 | 1.704628 | ACACCATCATCACCAACTCCA | 59.295 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
433 | 1151 | 2.086869 | CACACCATCATCACCAACTCC | 58.913 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
434 | 1152 | 1.470098 | GCACACCATCATCACCAACTC | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
435 | 1153 | 1.538047 | GCACACCATCATCACCAACT | 58.462 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
436 | 1154 | 0.527565 | GGCACACCATCATCACCAAC | 59.472 | 55.000 | 0.00 | 0.00 | 35.26 | 3.77 |
437 | 1155 | 0.405198 | AGGCACACCATCATCACCAA | 59.595 | 50.000 | 0.00 | 0.00 | 39.06 | 3.67 |
438 | 1156 | 0.322726 | CAGGCACACCATCATCACCA | 60.323 | 55.000 | 0.00 | 0.00 | 39.06 | 4.17 |
439 | 1157 | 1.660560 | GCAGGCACACCATCATCACC | 61.661 | 60.000 | 0.00 | 0.00 | 39.06 | 4.02 |
440 | 1158 | 1.660560 | GGCAGGCACACCATCATCAC | 61.661 | 60.000 | 0.00 | 0.00 | 39.06 | 3.06 |
441 | 1159 | 1.378911 | GGCAGGCACACCATCATCA | 60.379 | 57.895 | 0.00 | 0.00 | 39.06 | 3.07 |
442 | 1160 | 0.754217 | ATGGCAGGCACACCATCATC | 60.754 | 55.000 | 0.00 | 0.00 | 42.69 | 2.92 |
443 | 1161 | 1.308666 | ATGGCAGGCACACCATCAT | 59.691 | 52.632 | 0.00 | 0.00 | 42.69 | 2.45 |
444 | 1162 | 2.765279 | ATGGCAGGCACACCATCA | 59.235 | 55.556 | 0.00 | 0.00 | 42.69 | 3.07 |
447 | 1165 | 4.365111 | GGGATGGCAGGCACACCA | 62.365 | 66.667 | 19.13 | 0.00 | 41.01 | 4.17 |
454 | 1172 | 1.152984 | TATGTTGCGGGATGGCAGG | 60.153 | 57.895 | 0.00 | 0.00 | 44.94 | 4.85 |
455 | 1173 | 1.168407 | CCTATGTTGCGGGATGGCAG | 61.168 | 60.000 | 0.00 | 0.00 | 44.94 | 4.85 |
456 | 1174 | 1.152984 | CCTATGTTGCGGGATGGCA | 60.153 | 57.895 | 0.00 | 0.00 | 42.12 | 4.92 |
457 | 1175 | 2.555547 | GCCTATGTTGCGGGATGGC | 61.556 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
458 | 1176 | 1.898574 | GGCCTATGTTGCGGGATGG | 60.899 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
459 | 1177 | 2.253758 | CGGCCTATGTTGCGGGATG | 61.254 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
460 | 1178 | 2.111043 | CGGCCTATGTTGCGGGAT | 59.889 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
461 | 1179 | 3.379865 | GACGGCCTATGTTGCGGGA | 62.380 | 63.158 | 0.00 | 0.00 | 33.78 | 5.14 |
462 | 1180 | 2.895372 | GACGGCCTATGTTGCGGG | 60.895 | 66.667 | 0.00 | 0.00 | 33.78 | 6.13 |
463 | 1181 | 2.895372 | GGACGGCCTATGTTGCGG | 60.895 | 66.667 | 0.00 | 0.00 | 35.42 | 5.69 |
464 | 1182 | 2.971428 | ATCGGACGGCCTATGTTGCG | 62.971 | 60.000 | 5.33 | 0.00 | 0.00 | 4.85 |
465 | 1183 | 1.222115 | GATCGGACGGCCTATGTTGC | 61.222 | 60.000 | 5.33 | 0.00 | 0.00 | 4.17 |
466 | 1184 | 0.389391 | AGATCGGACGGCCTATGTTG | 59.611 | 55.000 | 5.33 | 0.00 | 0.00 | 3.33 |
467 | 1185 | 1.991121 | TAGATCGGACGGCCTATGTT | 58.009 | 50.000 | 5.33 | 0.00 | 0.00 | 2.71 |
468 | 1186 | 2.217510 | ATAGATCGGACGGCCTATGT | 57.782 | 50.000 | 5.33 | 0.00 | 0.00 | 2.29 |
469 | 1187 | 4.023622 | CAGATATAGATCGGACGGCCTATG | 60.024 | 50.000 | 5.33 | 0.00 | 37.15 | 2.23 |
470 | 1188 | 4.138290 | CAGATATAGATCGGACGGCCTAT | 58.862 | 47.826 | 5.33 | 0.00 | 37.15 | 2.57 |
471 | 1189 | 3.199289 | TCAGATATAGATCGGACGGCCTA | 59.801 | 47.826 | 5.33 | 0.00 | 37.15 | 3.93 |
472 | 1190 | 2.026169 | TCAGATATAGATCGGACGGCCT | 60.026 | 50.000 | 5.33 | 0.00 | 37.15 | 5.19 |
473 | 1191 | 2.366533 | TCAGATATAGATCGGACGGCC | 58.633 | 52.381 | 0.00 | 0.00 | 37.15 | 6.13 |
474 | 1192 | 3.243234 | CCATCAGATATAGATCGGACGGC | 60.243 | 52.174 | 2.19 | 0.00 | 38.82 | 5.68 |
475 | 1193 | 4.200092 | TCCATCAGATATAGATCGGACGG | 58.800 | 47.826 | 6.30 | 6.30 | 39.94 | 4.79 |
476 | 1194 | 6.148645 | CCTATCCATCAGATATAGATCGGACG | 59.851 | 46.154 | 2.19 | 0.00 | 38.82 | 4.79 |
477 | 1195 | 7.227873 | TCCTATCCATCAGATATAGATCGGAC | 58.772 | 42.308 | 2.19 | 0.00 | 38.82 | 4.79 |
478 | 1196 | 7.394144 | TCCTATCCATCAGATATAGATCGGA | 57.606 | 40.000 | 2.64 | 2.64 | 40.05 | 4.55 |
479 | 1197 | 7.176515 | CCTTCCTATCCATCAGATATAGATCGG | 59.823 | 44.444 | 2.72 | 0.00 | 36.84 | 4.18 |
480 | 1198 | 7.941790 | TCCTTCCTATCCATCAGATATAGATCG | 59.058 | 40.741 | 2.72 | 0.00 | 36.84 | 3.69 |
481 | 1199 | 9.653516 | TTCCTTCCTATCCATCAGATATAGATC | 57.346 | 37.037 | 2.72 | 0.00 | 36.84 | 2.75 |
483 | 1201 | 9.261035 | GTTTCCTTCCTATCCATCAGATATAGA | 57.739 | 37.037 | 2.72 | 0.00 | 36.84 | 1.98 |
484 | 1202 | 9.265862 | AGTTTCCTTCCTATCCATCAGATATAG | 57.734 | 37.037 | 0.00 | 0.00 | 36.84 | 1.31 |
486 | 1204 | 9.796242 | ATAGTTTCCTTCCTATCCATCAGATAT | 57.204 | 33.333 | 0.00 | 0.00 | 36.84 | 1.63 |
487 | 1205 | 9.040259 | CATAGTTTCCTTCCTATCCATCAGATA | 57.960 | 37.037 | 0.00 | 0.00 | 36.33 | 1.98 |
488 | 1206 | 7.736691 | TCATAGTTTCCTTCCTATCCATCAGAT | 59.263 | 37.037 | 0.00 | 0.00 | 39.15 | 2.90 |
489 | 1207 | 7.015682 | GTCATAGTTTCCTTCCTATCCATCAGA | 59.984 | 40.741 | 0.00 | 0.00 | 0.00 | 3.27 |
490 | 1208 | 7.158021 | GTCATAGTTTCCTTCCTATCCATCAG | 58.842 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
491 | 1209 | 6.615316 | TGTCATAGTTTCCTTCCTATCCATCA | 59.385 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
492 | 1210 | 7.067496 | TGTCATAGTTTCCTTCCTATCCATC | 57.933 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
493 | 1211 | 7.451731 | TTGTCATAGTTTCCTTCCTATCCAT | 57.548 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
494 | 1212 | 6.884472 | TTGTCATAGTTTCCTTCCTATCCA | 57.116 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
495 | 1213 | 8.753497 | AAATTGTCATAGTTTCCTTCCTATCC | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
497 | 1215 | 8.470002 | GCAAAATTGTCATAGTTTCCTTCCTAT | 58.530 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
498 | 1216 | 7.450014 | TGCAAAATTGTCATAGTTTCCTTCCTA | 59.550 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
499 | 1217 | 6.267471 | TGCAAAATTGTCATAGTTTCCTTCCT | 59.733 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
500 | 1218 | 6.454795 | TGCAAAATTGTCATAGTTTCCTTCC | 58.545 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
501 | 1219 | 7.945033 | TTGCAAAATTGTCATAGTTTCCTTC | 57.055 | 32.000 | 0.00 | 0.00 | 0.00 | 3.46 |
502 | 1220 | 8.729805 | TTTTGCAAAATTGTCATAGTTTCCTT | 57.270 | 26.923 | 20.46 | 0.00 | 0.00 | 3.36 |
503 | 1221 | 8.729805 | TTTTTGCAAAATTGTCATAGTTTCCT | 57.270 | 26.923 | 24.39 | 0.00 | 0.00 | 3.36 |
504 | 1222 | 8.825745 | TCTTTTTGCAAAATTGTCATAGTTTCC | 58.174 | 29.630 | 24.39 | 0.00 | 0.00 | 3.13 |
508 | 1226 | 9.423061 | GGTATCTTTTTGCAAAATTGTCATAGT | 57.577 | 29.630 | 24.39 | 10.32 | 0.00 | 2.12 |
509 | 1227 | 8.872845 | GGGTATCTTTTTGCAAAATTGTCATAG | 58.127 | 33.333 | 24.39 | 16.41 | 0.00 | 2.23 |
510 | 1228 | 7.543868 | CGGGTATCTTTTTGCAAAATTGTCATA | 59.456 | 33.333 | 24.39 | 12.99 | 0.00 | 2.15 |
511 | 1229 | 6.368516 | CGGGTATCTTTTTGCAAAATTGTCAT | 59.631 | 34.615 | 24.39 | 13.84 | 0.00 | 3.06 |
512 | 1230 | 5.694006 | CGGGTATCTTTTTGCAAAATTGTCA | 59.306 | 36.000 | 24.39 | 9.07 | 0.00 | 3.58 |
513 | 1231 | 5.389411 | GCGGGTATCTTTTTGCAAAATTGTC | 60.389 | 40.000 | 24.39 | 13.66 | 0.00 | 3.18 |
514 | 1232 | 4.450757 | GCGGGTATCTTTTTGCAAAATTGT | 59.549 | 37.500 | 24.39 | 14.99 | 0.00 | 2.71 |
515 | 1233 | 4.450419 | TGCGGGTATCTTTTTGCAAAATTG | 59.550 | 37.500 | 24.39 | 19.07 | 0.00 | 2.32 |
516 | 1234 | 4.450757 | GTGCGGGTATCTTTTTGCAAAATT | 59.549 | 37.500 | 24.39 | 14.72 | 33.67 | 1.82 |
517 | 1235 | 3.993736 | GTGCGGGTATCTTTTTGCAAAAT | 59.006 | 39.130 | 24.39 | 12.94 | 33.67 | 1.82 |
518 | 1236 | 3.068873 | AGTGCGGGTATCTTTTTGCAAAA | 59.931 | 39.130 | 20.46 | 20.46 | 33.67 | 2.44 |
519 | 1237 | 2.625790 | AGTGCGGGTATCTTTTTGCAAA | 59.374 | 40.909 | 8.05 | 8.05 | 33.67 | 3.68 |
520 | 1238 | 2.227865 | GAGTGCGGGTATCTTTTTGCAA | 59.772 | 45.455 | 0.00 | 0.00 | 33.67 | 4.08 |
521 | 1239 | 1.810151 | GAGTGCGGGTATCTTTTTGCA | 59.190 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
522 | 1240 | 1.132453 | GGAGTGCGGGTATCTTTTTGC | 59.868 | 52.381 | 0.00 | 0.00 | 0.00 | 3.68 |
523 | 1241 | 2.711542 | AGGAGTGCGGGTATCTTTTTG | 58.288 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
524 | 1242 | 3.434940 | AAGGAGTGCGGGTATCTTTTT | 57.565 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
525 | 1243 | 3.344515 | GAAAGGAGTGCGGGTATCTTTT | 58.655 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
526 | 1244 | 2.355818 | GGAAAGGAGTGCGGGTATCTTT | 60.356 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
527 | 1245 | 1.209747 | GGAAAGGAGTGCGGGTATCTT | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
528 | 1246 | 0.831307 | GGAAAGGAGTGCGGGTATCT | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
529 | 1247 | 0.539986 | TGGAAAGGAGTGCGGGTATC | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
530 | 1248 | 0.252197 | GTGGAAAGGAGTGCGGGTAT | 59.748 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
531 | 1249 | 1.122632 | TGTGGAAAGGAGTGCGGGTA | 61.123 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
532 | 1250 | 1.779061 | ATGTGGAAAGGAGTGCGGGT | 61.779 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
533 | 1251 | 0.609131 | AATGTGGAAAGGAGTGCGGG | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
534 | 1252 | 1.068333 | CAAATGTGGAAAGGAGTGCGG | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
535 | 1253 | 1.666888 | GCAAATGTGGAAAGGAGTGCG | 60.667 | 52.381 | 0.00 | 0.00 | 0.00 | 5.34 |
536 | 1254 | 1.340889 | TGCAAATGTGGAAAGGAGTGC | 59.659 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
537 | 1255 | 2.886523 | TCTGCAAATGTGGAAAGGAGTG | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
538 | 1256 | 3.228188 | TCTGCAAATGTGGAAAGGAGT | 57.772 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
539 | 1257 | 5.163581 | CCTTATCTGCAAATGTGGAAAGGAG | 60.164 | 44.000 | 1.03 | 0.00 | 34.23 | 3.69 |
540 | 1258 | 4.706476 | CCTTATCTGCAAATGTGGAAAGGA | 59.294 | 41.667 | 1.03 | 0.00 | 34.23 | 3.36 |
541 | 1259 | 4.678840 | GCCTTATCTGCAAATGTGGAAAGG | 60.679 | 45.833 | 2.69 | 2.69 | 35.22 | 3.11 |
542 | 1260 | 4.427312 | GCCTTATCTGCAAATGTGGAAAG | 58.573 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
543 | 1261 | 3.195396 | GGCCTTATCTGCAAATGTGGAAA | 59.805 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
544 | 1262 | 2.760092 | GGCCTTATCTGCAAATGTGGAA | 59.240 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
545 | 1263 | 2.025037 | AGGCCTTATCTGCAAATGTGGA | 60.025 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
546 | 1264 | 2.381911 | AGGCCTTATCTGCAAATGTGG | 58.618 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
547 | 1265 | 3.181483 | GGAAGGCCTTATCTGCAAATGTG | 60.181 | 47.826 | 20.54 | 0.00 | 0.00 | 3.21 |
548 | 1266 | 3.026694 | GGAAGGCCTTATCTGCAAATGT | 58.973 | 45.455 | 20.54 | 0.00 | 0.00 | 2.71 |
549 | 1267 | 2.363359 | GGGAAGGCCTTATCTGCAAATG | 59.637 | 50.000 | 20.54 | 0.00 | 0.00 | 2.32 |
550 | 1268 | 2.245806 | AGGGAAGGCCTTATCTGCAAAT | 59.754 | 45.455 | 20.54 | 0.00 | 0.00 | 2.32 |
551 | 1269 | 1.640670 | AGGGAAGGCCTTATCTGCAAA | 59.359 | 47.619 | 20.54 | 0.00 | 0.00 | 3.68 |
552 | 1270 | 1.298953 | AGGGAAGGCCTTATCTGCAA | 58.701 | 50.000 | 20.54 | 0.00 | 0.00 | 4.08 |
553 | 1271 | 1.064463 | CAAGGGAAGGCCTTATCTGCA | 60.064 | 52.381 | 20.54 | 0.00 | 0.00 | 4.41 |
554 | 1272 | 1.064389 | ACAAGGGAAGGCCTTATCTGC | 60.064 | 52.381 | 20.54 | 5.12 | 0.00 | 4.26 |
555 | 1273 | 3.282885 | GAACAAGGGAAGGCCTTATCTG | 58.717 | 50.000 | 20.54 | 15.47 | 0.00 | 2.90 |
556 | 1274 | 2.919602 | TGAACAAGGGAAGGCCTTATCT | 59.080 | 45.455 | 20.54 | 15.86 | 0.00 | 1.98 |
557 | 1275 | 3.366052 | TGAACAAGGGAAGGCCTTATC | 57.634 | 47.619 | 20.54 | 13.81 | 0.00 | 1.75 |
558 | 1276 | 3.529319 | AGATGAACAAGGGAAGGCCTTAT | 59.471 | 43.478 | 20.54 | 4.41 | 0.00 | 1.73 |
559 | 1277 | 2.919602 | AGATGAACAAGGGAAGGCCTTA | 59.080 | 45.455 | 20.54 | 0.00 | 0.00 | 2.69 |
560 | 1278 | 1.713078 | AGATGAACAAGGGAAGGCCTT | 59.287 | 47.619 | 20.65 | 20.65 | 0.00 | 4.35 |
561 | 1279 | 1.376649 | AGATGAACAAGGGAAGGCCT | 58.623 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
562 | 1280 | 2.222227 | AAGATGAACAAGGGAAGGCC | 57.778 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
563 | 1281 | 5.196695 | AGATAAAGATGAACAAGGGAAGGC | 58.803 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
564 | 1282 | 5.825151 | GGAGATAAAGATGAACAAGGGAAGG | 59.175 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
565 | 1283 | 5.825151 | GGGAGATAAAGATGAACAAGGGAAG | 59.175 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
566 | 1284 | 5.252863 | TGGGAGATAAAGATGAACAAGGGAA | 59.747 | 40.000 | 0.00 | 0.00 | 0.00 | 3.97 |
567 | 1285 | 4.788075 | TGGGAGATAAAGATGAACAAGGGA | 59.212 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
568 | 1286 | 5.116084 | TGGGAGATAAAGATGAACAAGGG | 57.884 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
569 | 1287 | 7.394359 | TCTTTTGGGAGATAAAGATGAACAAGG | 59.606 | 37.037 | 0.00 | 0.00 | 35.93 | 3.61 |
570 | 1288 | 8.340618 | TCTTTTGGGAGATAAAGATGAACAAG | 57.659 | 34.615 | 0.00 | 0.00 | 35.93 | 3.16 |
571 | 1289 | 8.884124 | ATCTTTTGGGAGATAAAGATGAACAA | 57.116 | 30.769 | 8.75 | 0.00 | 44.92 | 2.83 |
572 | 1290 | 9.973661 | TTATCTTTTGGGAGATAAAGATGAACA | 57.026 | 29.630 | 16.29 | 0.00 | 45.69 | 3.18 |
602 | 1320 | 8.790718 | GGAACATCAAGATGCATTTATATGAGT | 58.209 | 33.333 | 14.86 | 5.91 | 42.39 | 3.41 |
603 | 1321 | 7.961283 | CGGAACATCAAGATGCATTTATATGAG | 59.039 | 37.037 | 14.86 | 7.08 | 42.39 | 2.90 |
604 | 1322 | 7.445096 | ACGGAACATCAAGATGCATTTATATGA | 59.555 | 33.333 | 14.86 | 9.71 | 42.39 | 2.15 |
605 | 1323 | 7.536281 | CACGGAACATCAAGATGCATTTATATG | 59.464 | 37.037 | 9.85 | 5.48 | 42.39 | 1.78 |
606 | 1324 | 7.587629 | CACGGAACATCAAGATGCATTTATAT | 58.412 | 34.615 | 9.85 | 0.00 | 42.39 | 0.86 |
607 | 1325 | 6.513230 | GCACGGAACATCAAGATGCATTTATA | 60.513 | 38.462 | 9.85 | 0.00 | 42.39 | 0.98 |
608 | 1326 | 5.734220 | GCACGGAACATCAAGATGCATTTAT | 60.734 | 40.000 | 9.85 | 0.00 | 42.39 | 1.40 |
609 | 1327 | 4.438608 | GCACGGAACATCAAGATGCATTTA | 60.439 | 41.667 | 9.85 | 0.00 | 42.39 | 1.40 |
610 | 1328 | 3.674138 | GCACGGAACATCAAGATGCATTT | 60.674 | 43.478 | 9.85 | 0.00 | 42.39 | 2.32 |
611 | 1329 | 2.159338 | GCACGGAACATCAAGATGCATT | 60.159 | 45.455 | 9.85 | 0.00 | 42.39 | 3.56 |
612 | 1330 | 1.402968 | GCACGGAACATCAAGATGCAT | 59.597 | 47.619 | 9.85 | 0.00 | 42.39 | 3.96 |
613 | 1331 | 0.804364 | GCACGGAACATCAAGATGCA | 59.196 | 50.000 | 9.85 | 0.00 | 42.39 | 3.96 |
614 | 1332 | 0.804364 | TGCACGGAACATCAAGATGC | 59.196 | 50.000 | 9.85 | 0.00 | 42.39 | 3.91 |
615 | 1333 | 3.431856 | CATTGCACGGAACATCAAGATG | 58.568 | 45.455 | 8.45 | 8.45 | 44.15 | 2.90 |
616 | 1334 | 2.159338 | GCATTGCACGGAACATCAAGAT | 60.159 | 45.455 | 3.15 | 0.00 | 0.00 | 2.40 |
617 | 1335 | 1.199789 | GCATTGCACGGAACATCAAGA | 59.800 | 47.619 | 3.15 | 0.00 | 0.00 | 3.02 |
618 | 1336 | 1.068402 | TGCATTGCACGGAACATCAAG | 60.068 | 47.619 | 7.38 | 0.00 | 31.71 | 3.02 |
619 | 1337 | 0.957362 | TGCATTGCACGGAACATCAA | 59.043 | 45.000 | 7.38 | 0.00 | 31.71 | 2.57 |
620 | 1338 | 2.638744 | TGCATTGCACGGAACATCA | 58.361 | 47.368 | 7.38 | 0.00 | 31.71 | 3.07 |
636 | 1354 | 1.026718 | AACTAGCAAGATGCCCGTGC | 61.027 | 55.000 | 6.11 | 6.11 | 46.52 | 5.34 |
637 | 1355 | 1.933853 | GTAACTAGCAAGATGCCCGTG | 59.066 | 52.381 | 0.00 | 0.00 | 46.52 | 4.94 |
638 | 1356 | 1.134491 | GGTAACTAGCAAGATGCCCGT | 60.134 | 52.381 | 0.00 | 0.00 | 46.52 | 5.28 |
639 | 1357 | 1.583054 | GGTAACTAGCAAGATGCCCG | 58.417 | 55.000 | 0.00 | 0.00 | 46.52 | 6.13 |
653 | 1371 | 5.675538 | AGCCACTCATATTTCAGAGGTAAC | 58.324 | 41.667 | 0.00 | 0.00 | 36.20 | 2.50 |
654 | 1372 | 5.957771 | AGCCACTCATATTTCAGAGGTAA | 57.042 | 39.130 | 0.00 | 0.00 | 36.20 | 2.85 |
679 | 1397 | 4.572389 | CCAGATGATTTAGACCCTTCAACG | 59.428 | 45.833 | 0.00 | 0.00 | 0.00 | 4.10 |
773 | 1491 | 9.710818 | ATTATTTGACTTGGGAGTACTAGTCTA | 57.289 | 33.333 | 19.42 | 12.25 | 38.23 | 2.59 |
827 | 1548 | 5.174395 | CAGGAAGTCTAATCTTGTCCAGTG | 58.826 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
848 | 1569 | 4.566545 | TTGTTCATAAATATGGGCGCAG | 57.433 | 40.909 | 10.83 | 0.00 | 34.50 | 5.18 |
908 | 1630 | 7.309133 | CCAGTCAAGCACAATATAAGTTCCAAA | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 3.28 |
1329 | 2070 | 1.228245 | ACCATGAACGCCAGTGCTT | 60.228 | 52.632 | 0.00 | 0.00 | 34.43 | 3.91 |
1539 | 2280 | 3.356529 | AGTGAAGGATCAACCATGGAC | 57.643 | 47.619 | 21.47 | 1.23 | 42.04 | 4.02 |
1659 | 2400 | 6.724351 | TGCCATATATGTCCTAAGCAATGAT | 58.276 | 36.000 | 11.73 | 0.00 | 0.00 | 2.45 |
1761 | 2505 | 1.079503 | GATGACGTCAACTGGGCTTC | 58.920 | 55.000 | 24.13 | 9.09 | 0.00 | 3.86 |
1765 | 2509 | 2.099141 | ATGTGATGACGTCAACTGGG | 57.901 | 50.000 | 24.13 | 0.00 | 38.90 | 4.45 |
1775 | 2519 | 4.272991 | GCTCCAGATGAAGAATGTGATGAC | 59.727 | 45.833 | 0.00 | 0.00 | 31.04 | 3.06 |
1783 | 2527 | 4.597004 | ACATGTTGCTCCAGATGAAGAAT | 58.403 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
1896 | 2645 | 9.567776 | AAAATTACCCCAAAAATTTAACAGAGG | 57.432 | 29.630 | 0.00 | 0.00 | 34.93 | 3.69 |
1973 | 2724 | 1.001641 | CCTTGGGAGTTGCCTCTGG | 60.002 | 63.158 | 0.00 | 0.00 | 37.86 | 3.86 |
2120 | 2871 | 8.947055 | AGTTCTGCATTTTGAAATAACAAGTT | 57.053 | 26.923 | 0.00 | 0.00 | 0.00 | 2.66 |
2291 | 3043 | 8.998377 | ACAAAATTACAACTCAAAGCAACTTTT | 58.002 | 25.926 | 0.00 | 0.00 | 30.60 | 2.27 |
2292 | 3044 | 8.546597 | ACAAAATTACAACTCAAAGCAACTTT | 57.453 | 26.923 | 0.00 | 0.00 | 33.58 | 2.66 |
2351 | 3103 | 8.253810 | TGAACATGGTCTCTTCACTAGATTTAG | 58.746 | 37.037 | 12.94 | 0.00 | 30.92 | 1.85 |
2389 | 3141 | 2.925578 | TTCCAGATGCTGATTTTGCG | 57.074 | 45.000 | 0.00 | 0.00 | 32.44 | 4.85 |
2422 | 3174 | 4.541705 | TCTGGAGAGGGAGATACTTCTTG | 58.458 | 47.826 | 0.00 | 0.00 | 30.30 | 3.02 |
2484 | 3236 | 6.266168 | TGTGAACTTTGATGACACAGTTTT | 57.734 | 33.333 | 0.00 | 0.00 | 43.94 | 2.43 |
2489 | 3241 | 4.376146 | TCGATGTGAACTTTGATGACACA | 58.624 | 39.130 | 0.00 | 0.00 | 43.70 | 3.72 |
2501 | 3253 | 7.065803 | TCCTAAGAAATGGAAATCGATGTGAAC | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
2545 | 3297 | 2.158900 | CCTCCATTTGCATCCGTAGAGT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2618 | 3373 | 6.486657 | CCAAGAACTGTTTCTGAACCTATCAA | 59.513 | 38.462 | 0.00 | 0.00 | 41.56 | 2.57 |
2794 | 3558 | 2.503356 | ACCTGATGGCCAAAACAACAAA | 59.497 | 40.909 | 10.96 | 0.00 | 36.63 | 2.83 |
2898 | 3662 | 2.030562 | CTCTGGTTTCGGCACCGT | 59.969 | 61.111 | 9.23 | 0.00 | 40.09 | 4.83 |
2903 | 3667 | 1.535896 | GTTTTCTCCTCTGGTTTCGGC | 59.464 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
3055 | 3821 | 2.497273 | GAGGGTTAAAGCATGCACCATT | 59.503 | 45.455 | 21.98 | 10.31 | 0.00 | 3.16 |
3148 | 3938 | 6.906157 | ACCTATTTCAGCATTAATGGATGG | 57.094 | 37.500 | 17.02 | 8.86 | 0.00 | 3.51 |
3149 | 3939 | 8.174733 | AGAACCTATTTCAGCATTAATGGATG | 57.825 | 34.615 | 17.02 | 7.11 | 36.57 | 3.51 |
3150 | 3940 | 9.512588 | CTAGAACCTATTTCAGCATTAATGGAT | 57.487 | 33.333 | 17.02 | 0.00 | 36.57 | 3.41 |
3151 | 3941 | 7.445402 | GCTAGAACCTATTTCAGCATTAATGGA | 59.555 | 37.037 | 17.02 | 4.09 | 37.85 | 3.41 |
3152 | 3942 | 7.446625 | AGCTAGAACCTATTTCAGCATTAATGG | 59.553 | 37.037 | 17.02 | 1.65 | 39.19 | 3.16 |
3153 | 3943 | 8.388484 | AGCTAGAACCTATTTCAGCATTAATG | 57.612 | 34.615 | 11.27 | 11.27 | 39.19 | 1.90 |
3155 | 3945 | 9.547753 | CTTAGCTAGAACCTATTTCAGCATTAA | 57.452 | 33.333 | 0.00 | 0.00 | 39.19 | 1.40 |
3156 | 3946 | 7.657761 | GCTTAGCTAGAACCTATTTCAGCATTA | 59.342 | 37.037 | 0.00 | 0.00 | 39.19 | 1.90 |
3157 | 3947 | 6.484977 | GCTTAGCTAGAACCTATTTCAGCATT | 59.515 | 38.462 | 0.00 | 0.00 | 39.19 | 3.56 |
3158 | 3948 | 5.994668 | GCTTAGCTAGAACCTATTTCAGCAT | 59.005 | 40.000 | 0.00 | 0.00 | 39.19 | 3.79 |
3159 | 3949 | 5.360591 | GCTTAGCTAGAACCTATTTCAGCA | 58.639 | 41.667 | 0.00 | 0.00 | 39.19 | 4.41 |
3160 | 3950 | 4.752604 | GGCTTAGCTAGAACCTATTTCAGC | 59.247 | 45.833 | 3.59 | 0.00 | 38.04 | 4.26 |
3161 | 3951 | 5.918608 | TGGCTTAGCTAGAACCTATTTCAG | 58.081 | 41.667 | 3.59 | 0.00 | 36.57 | 3.02 |
3162 | 3952 | 5.950544 | TGGCTTAGCTAGAACCTATTTCA | 57.049 | 39.130 | 3.59 | 0.00 | 36.57 | 2.69 |
3163 | 3953 | 6.768381 | ACAATGGCTTAGCTAGAACCTATTTC | 59.232 | 38.462 | 3.59 | 0.00 | 33.95 | 2.17 |
3164 | 3954 | 6.663734 | ACAATGGCTTAGCTAGAACCTATTT | 58.336 | 36.000 | 3.59 | 0.00 | 0.00 | 1.40 |
3165 | 3955 | 6.253946 | ACAATGGCTTAGCTAGAACCTATT | 57.746 | 37.500 | 3.59 | 5.86 | 0.00 | 1.73 |
3166 | 3956 | 5.896073 | ACAATGGCTTAGCTAGAACCTAT | 57.104 | 39.130 | 3.59 | 1.32 | 0.00 | 2.57 |
3167 | 3957 | 6.996180 | ATACAATGGCTTAGCTAGAACCTA | 57.004 | 37.500 | 3.59 | 0.00 | 0.00 | 3.08 |
3168 | 3958 | 5.896073 | ATACAATGGCTTAGCTAGAACCT | 57.104 | 39.130 | 3.59 | 0.00 | 0.00 | 3.50 |
3169 | 3959 | 9.892130 | ATTATATACAATGGCTTAGCTAGAACC | 57.108 | 33.333 | 3.59 | 0.00 | 0.00 | 3.62 |
3272 | 4062 | 0.322816 | ACAGGGAGCAATGCGACATT | 60.323 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3306 | 4096 | 9.638176 | ATTCAGTTTATCTTGGATGCTTAAGAT | 57.362 | 29.630 | 6.67 | 5.36 | 43.80 | 2.40 |
3412 | 4202 | 2.417516 | CCGCCAGGATGTCCGTAG | 59.582 | 66.667 | 0.00 | 0.00 | 42.08 | 3.51 |
3446 | 4236 | 0.251653 | TTAGGGTGCTCAGGACGTCT | 60.252 | 55.000 | 16.46 | 0.00 | 0.00 | 4.18 |
3468 | 4258 | 1.425428 | CAATCCAAGCGACGAAGGC | 59.575 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
3501 | 4291 | 0.417841 | TCTCCCTCCTGGCTACCTTT | 59.582 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3519 | 4309 | 4.293662 | AGAGACCACCTGATTCCTTTTC | 57.706 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
3521 | 4311 | 5.094387 | TCTTAGAGACCACCTGATTCCTTT | 58.906 | 41.667 | 0.00 | 0.00 | 0.00 | 3.11 |
3522 | 4312 | 4.689062 | TCTTAGAGACCACCTGATTCCTT | 58.311 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
3541 | 4331 | 9.084533 | CTTAGAGGCTTAGATGGTATACTTCTT | 57.915 | 37.037 | 12.17 | 0.00 | 35.44 | 2.52 |
3575 | 4367 | 2.627863 | TCAAACCCATCGAAATTGCG | 57.372 | 45.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3619 | 4412 | 5.943416 | TGTAAGATCAATCAAAACATCGGGT | 59.057 | 36.000 | 0.00 | 0.00 | 0.00 | 5.28 |
3620 | 4413 | 6.435430 | TGTAAGATCAATCAAAACATCGGG | 57.565 | 37.500 | 0.00 | 0.00 | 0.00 | 5.14 |
3621 | 4414 | 7.475015 | ACATGTAAGATCAATCAAAACATCGG | 58.525 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
3801 | 4609 | 0.035152 | TCAGAAAGCCGCACATCCAT | 60.035 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3826 | 4634 | 3.119743 | TCAAGCGCATCCATTCTTGAAAG | 60.120 | 43.478 | 11.47 | 0.00 | 41.08 | 2.62 |
3843 | 4651 | 5.123027 | CCTCACATTTAGAGGTCTTTCAAGC | 59.877 | 44.000 | 0.00 | 0.00 | 46.07 | 4.01 |
3933 | 4748 | 6.378710 | TGGATTCTACAGAAGATGTCTACG | 57.621 | 41.667 | 0.00 | 0.00 | 42.70 | 3.51 |
3939 | 4754 | 5.557576 | TCCCATGGATTCTACAGAAGATG | 57.442 | 43.478 | 15.22 | 1.01 | 37.48 | 2.90 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.