AutoCloner

Multiple sequence alignment - TraesCS6D01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G087400	chr6D	100.000	2525	0	0	1	2525	52725408	52722884	0.000000e+00	4663.0
1	TraesCS6D01G087400	chr6B	90.540	2537	119	82	4	2471	119850314	119847830	0.000000e+00	3243.0
2	TraesCS6D01G087400	chr6B	87.654	162	9	3	1844	1994	371604891	371604730	7.180000e-41	178.0
3	TraesCS6D01G087400	chr6B	88.571	140	5	4	1644	1772	712669310	712669171	2.600000e-35	159.0
4	TraesCS6D01G087400	chr6A	89.794	2567	93	80	4	2525	63611263	63608821	0.000000e+00	3133.0
5	TraesCS6D01G087400	chr2B	92.737	537	32	4	1790	2323	361867420	361866888	0.000000e+00	769.0
6	TraesCS6D01G087400	chr2B	100.000	36	0	0	1025	1060	34588163	34588128	1.620000e-07	67.6
7	TraesCS6D01G087400	chr7B	91.516	554	37	6	1790	2337	387895612	387896161	0.000000e+00	754.0
8	TraesCS6D01G087400	chr7B	89.412	170	15	1	1063	1232	547711349	547711515	7.080000e-51	211.0
9	TraesCS6D01G087400	chr5A	82.514	366	39	17	2006	2358	664983894	664984247	5.280000e-77	298.0
10	TraesCS6D01G087400	chr5A	86.164	159	13	4	1844	1994	216665593	216665436	2.010000e-36	163.0
11	TraesCS6D01G087400	chr5A	98.039	51	1	0	714	764	377119607	377119657	3.460000e-14	89.8
12	TraesCS6D01G087400	chr3A	82.105	380	36	15	1996	2358	530202820	530203184	1.900000e-76	296.0
13	TraesCS6D01G087400	chr3A	87.654	162	9	7	1844	1994	530202753	530202914	7.180000e-41	178.0
14	TraesCS6D01G087400	chr3A	87.705	122	6	2	1019	1140	531906045	531905933	1.580000e-27	134.0
15	TraesCS6D01G087400	chr3A	98.182	55	1	0	714	768	332220139	332220085	2.070000e-16	97.1
16	TraesCS6D01G087400	chr7A	83.861	316	33	12	2052	2358	96202895	96203201	4.110000e-73	285.0
17	TraesCS6D01G087400	chr7A	86.538	156	15	3	1844	1993	576347813	576347658	1.550000e-37	167.0
18	TraesCS6D01G087400	chr2A	82.951	305	29	13	2063	2358	108514119	108513829	1.160000e-63	254.0
19	TraesCS6D01G087400	chr2D	87.654	162	9	7	1844	1994	427947449	427947610	7.180000e-41	178.0
20	TraesCS6D01G087400	chrUn	86.538	156	15	3	1844	1993	339003381	339003536	1.550000e-37	167.0
21	TraesCS6D01G087400	chr7D	88.571	140	5	4	1644	1772	37275867	37276006	2.600000e-35	159.0
22	TraesCS6D01G087400	chr7D	89.333	75	2	1	1019	1093	420082382	420082450	3.460000e-14	89.8
23	TraesCS6D01G087400	chr5D	88.571	140	5	4	1644	1772	297792759	297792620	2.600000e-35	159.0
24	TraesCS6D01G087400	chr5D	88.571	140	5	4	1644	1772	384073755	384073894	2.600000e-35	159.0
25	TraesCS6D01G087400	chr5D	98.039	51	1	0	714	764	285247438	285247488	3.460000e-14	89.8
26	TraesCS6D01G087400	chr5D	90.000	50	5	0	719	768	113391895	113391846	5.830000e-07	65.8
27	TraesCS6D01G087400	chr3D	88.571	140	5	4	1644	1772	70729664	70729803	2.600000e-35	159.0
28	TraesCS6D01G087400	chr3D	87.857	140	6	4	1644	1772	443945626	443945765	1.210000e-33	154.0
29	TraesCS6D01G087400	chr3D	98.182	55	1	0	714	768	252334799	252334853	2.070000e-16	97.1
30	TraesCS6D01G087400	chr3B	88.571	140	5	4	1644	1772	613814562	613814423	2.600000e-35	159.0
31	TraesCS6D01G087400	chr3B	98.182	55	1	0	714	768	313808032	313808086	2.070000e-16	97.1
32	TraesCS6D01G087400	chr1A	85.535	159	14	4	1844	1994	588672269	588672426	9.350000e-35	158.0
33	TraesCS6D01G087400	chr1A	85.256	156	16	5	1844	1994	100275448	100275295	1.210000e-33	154.0
34	TraesCS6D01G087400	chr1A	86.777	121	7	3	1020	1140	467151172	467151283	2.640000e-25	126.0
35	TraesCS6D01G087400	chr1D	87.705	122	6	2	1019	1140	413940966	413941078	1.580000e-27	134.0
36	TraesCS6D01G087400	chr5B	98.039	51	1	0	714	764	322858711	322858761	3.460000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G087400	chr6D	52722884	52725408	2524	True	4663	4663	100.000	1	2525	1	chr6D.!!$R1	2524
1	TraesCS6D01G087400	chr6B	119847830	119850314	2484	True	3243	3243	90.540	4	2471	1	chr6B.!!$R1	2467
2	TraesCS6D01G087400	chr6A	63608821	63611263	2442	True	3133	3133	89.794	4	2525	1	chr6A.!!$R1	2521
3	TraesCS6D01G087400	chr2B	361866888	361867420	532	True	769	769	92.737	1790	2323	1	chr2B.!!$R2	533
4	TraesCS6D01G087400	chr7B	387895612	387896161	549	False	754	754	91.516	1790	2337	1	chr7B.!!$F1	547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
295	321	0.554865	ATTCCCATTCCCACCCTCCA	60.555	55.0	0.0	0.0	0.0	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1818	1907	0.45541	TGAACAACAACAGCACAGGC	59.545	50.0	0.0	0.0	41.61	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
85	86	4.908687	AGTGAACGCGCCTGCACA	62.909	61.111	18.19	2.27	42.97	4.57
87	88	2.047750	TGAACGCGCCTGCACATA	60.048	55.556	5.73	0.00	42.97	2.29
92	93	2.856346	CGCGCCTGCACATACGTAC	61.856	63.158	0.00	0.00	42.97	3.67
295	321	0.554865	ATTCCCATTCCCACCCTCCA	60.555	55.000	0.00	0.00	0.00	3.86
306	333	1.850755	ACCCTCCACCCACGGAATT	60.851	57.895	0.00	0.00	33.65	2.17
328	355	2.817420	ATTCCCGTTCGTCCTCCCCT	62.817	60.000	0.00	0.00	0.00	4.79
395	422	3.039526	CCCCCTCCTCCTCCTCCT	61.040	72.222	0.00	0.00	0.00	3.69
396	423	2.612251	CCCCTCCTCCTCCTCCTC	59.388	72.222	0.00	0.00	0.00	3.71
424	451	0.719015	TTCCTCCTCCTCCACTCCAT	59.281	55.000	0.00	0.00	0.00	3.41
482	522	5.523588	AGAGAGAGAGAGAGAGAGAGAGAA	58.476	45.833	0.00	0.00	0.00	2.87
485	543	5.723887	AGAGAGAGAGAGAGAGAGAGAAAGT	59.276	44.000	0.00	0.00	0.00	2.66
491	549	4.848357	AGAGAGAGAGAGAAAGTGAGGAG	58.152	47.826	0.00	0.00	0.00	3.69
500	558	2.975489	AGAAAGTGAGGAGGAGAAGCAA	59.025	45.455	0.00	0.00	0.00	3.91
506	564	1.827969	GAGGAGGAGAAGCAAGCAGTA	59.172	52.381	0.00	0.00	0.00	2.74
507	565	1.552792	AGGAGGAGAAGCAAGCAGTAC	59.447	52.381	0.00	0.00	0.00	2.73
509	567	1.202582	GAGGAGAAGCAAGCAGTACGA	59.797	52.381	0.00	0.00	0.00	3.43
510	568	1.203523	AGGAGAAGCAAGCAGTACGAG	59.796	52.381	0.00	0.00	0.00	4.18
511	569	1.202582	GGAGAAGCAAGCAGTACGAGA	59.797	52.381	0.00	0.00	0.00	4.04
512	570	2.525055	GAGAAGCAAGCAGTACGAGAG	58.475	52.381	0.00	0.00	0.00	3.20
513	571	0.995728	GAAGCAAGCAGTACGAGAGC	59.004	55.000	0.00	0.00	0.00	4.09
514	572	0.605589	AAGCAAGCAGTACGAGAGCT	59.394	50.000	0.00	0.00	41.03	4.09
515	573	1.464734	AGCAAGCAGTACGAGAGCTA	58.535	50.000	5.77	0.00	37.70	3.32
516	574	1.403679	AGCAAGCAGTACGAGAGCTAG	59.596	52.381	5.77	0.00	37.70	3.42
517	575	1.535015	GCAAGCAGTACGAGAGCTAGG	60.535	57.143	5.77	3.84	37.70	3.02
518	576	2.017782	CAAGCAGTACGAGAGCTAGGA	58.982	52.381	5.77	0.00	37.70	2.94
519	577	2.421751	AGCAGTACGAGAGCTAGGAA	57.578	50.000	0.00	0.00	36.73	3.36
520	578	2.294074	AGCAGTACGAGAGCTAGGAAG	58.706	52.381	0.00	0.00	36.73	3.46
521	579	2.092861	AGCAGTACGAGAGCTAGGAAGA	60.093	50.000	0.00	0.00	36.73	2.87
522	580	2.683867	GCAGTACGAGAGCTAGGAAGAA	59.316	50.000	0.00	0.00	0.00	2.52
534	592	2.312424	AGGAAGAAAGAGGTCGGTCT	57.688	50.000	0.00	0.00	0.00	3.85
535	593	2.172679	AGGAAGAAAGAGGTCGGTCTC	58.827	52.381	0.00	0.00	0.00	3.36
536	594	1.893801	GGAAGAAAGAGGTCGGTCTCA	59.106	52.381	8.26	0.00	36.30	3.27
577	636	1.981256	TGGTTGGTTGCTTCTCTTCC	58.019	50.000	0.00	0.00	0.00	3.46
578	637	1.248486	GGTTGGTTGCTTCTCTTCCC	58.752	55.000	0.00	0.00	0.00	3.97
826	888	1.057275	CCTCCTCCTCCTTTAGCCCC	61.057	65.000	0.00	0.00	0.00	5.80
891	956	2.714871	CTCTCGTCGTCGTCGTCGT	61.715	63.158	18.44	0.00	45.27	4.34
989	1058	4.112341	GCTTGCCTGCTCGCTTGG	62.112	66.667	0.00	0.00	0.00	3.61
991	1060	2.974489	CTTGCCTGCTCGCTTGGTG	61.974	63.158	0.00	0.00	0.00	4.17
995	1064	2.031012	CTGCTCGCTTGGTGGTGA	59.969	61.111	0.00	0.00	0.00	4.02
1012	1081	2.284625	AGGTGATGGCGTCCTCCA	60.285	61.111	16.54	0.00	40.97	3.86
1013	1082	2.187946	GGTGATGGCGTCCTCCAG	59.812	66.667	3.88	0.00	39.89	3.86
1014	1083	2.512515	GTGATGGCGTCCTCCAGC	60.513	66.667	3.88	0.00	42.56	4.85
1015	1084	4.147449	TGATGGCGTCCTCCAGCG	62.147	66.667	3.88	0.00	45.03	5.18
1016	1085	4.899239	GATGGCGTCCTCCAGCGG	62.899	72.222	0.00	0.00	39.89	5.52
1625	1705	8.842358	TTCTGGTGTTTCAGGTTAATTACTAG	57.158	34.615	0.00	0.00	35.58	2.57
1626	1706	7.970102	TCTGGTGTTTCAGGTTAATTACTAGT	58.030	34.615	0.00	0.00	35.58	2.57
1627	1707	9.092338	TCTGGTGTTTCAGGTTAATTACTAGTA	57.908	33.333	0.00	0.00	35.58	1.82
1628	1708	9.148104	CTGGTGTTTCAGGTTAATTACTAGTAC	57.852	37.037	0.91	0.00	0.00	2.73
1629	1709	8.873144	TGGTGTTTCAGGTTAATTACTAGTACT	58.127	33.333	0.91	0.00	0.00	2.73
1730	1811	4.776349	TGTGTAATCTGAACTGGTGTGTT	58.224	39.130	0.00	0.00	0.00	3.32
1767	1848	4.336433	TGGTTCTTAAGCTTAGCATGCATC	59.664	41.667	21.98	5.43	0.00	3.91
1768	1849	4.336433	GGTTCTTAAGCTTAGCATGCATCA	59.664	41.667	21.98	0.89	0.00	3.07
1769	1850	5.269313	GTTCTTAAGCTTAGCATGCATCAC	58.731	41.667	21.98	6.58	0.00	3.06
1770	1851	3.879295	TCTTAAGCTTAGCATGCATCACC	59.121	43.478	21.98	3.86	0.00	4.02
1821	1910	0.823460	GCAGTAAGCTCTCTCTGCCT	59.177	55.000	16.25	0.00	44.84	4.75
1822	1911	1.471327	GCAGTAAGCTCTCTCTGCCTG	60.471	57.143	16.25	3.90	44.84	4.85
1825	1914	0.534412	TAAGCTCTCTCTGCCTGTGC	59.466	55.000	0.00	0.00	38.26	4.57
1828	1917	1.973760	CTCTCTCTGCCTGTGCTGT	59.026	57.895	0.00	0.00	38.71	4.40
2122	2220	2.284190	CTCTGCCTGGCTTAAACTAGC	58.716	52.381	21.03	0.00	40.48	3.42
2131	2229	5.163713	CCTGGCTTAAACTAGCTTCACATTC	60.164	44.000	0.00	0.00	40.99	2.67
2215	2328	3.007074	TGCCAATCAATGCACAATGTTCT	59.993	39.130	0.00	0.00	31.31	3.01
2217	2330	3.930229	CCAATCAATGCACAATGTTCTGG	59.070	43.478	0.00	0.00	0.00	3.86
2243	2357	3.392285	TCCTCATGATATTCCACCCACAG	59.608	47.826	0.00	0.00	0.00	3.66
2337	2451	5.186797	TGGAATAAAAACAACTGGCCCATAG	59.813	40.000	0.00	0.00	0.00	2.23
2338	2452	5.395214	GGAATAAAAACAACTGGCCCATAGG	60.395	44.000	0.00	0.00	0.00	2.57
2366	2482	8.783833	TTTTTCTTCATTCACCAATTTTGACA	57.216	26.923	0.00	0.00	0.00	3.58
2423	2540	2.983030	TGGACGGTTGTGCATGCC	60.983	61.111	16.68	7.25	41.94	4.40
2478	2596	2.418669	TCCCCTCCACTATTGATTCCC	58.581	52.381	0.00	0.00	0.00	3.97

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	2.882777	CGCCACTGCTGTAGCTCG	60.883	66.667	11.87	2.94	42.66	5.03
38	39	3.191539	GCGCCACTGCTGTAGCTC	61.192	66.667	11.87	0.64	42.66	4.09
85	86	2.028484	CCATGCCGCCGTACGTAT	59.972	61.111	15.21	0.00	41.42	3.06
204	213	4.200283	GAGTGAGAGCGCGGGGAG	62.200	72.222	8.83	0.00	0.00	4.30
206	215	4.504916	CTGAGTGAGAGCGCGGGG	62.505	72.222	8.83	0.00	0.00	5.73
209	218	3.713205	ATGGCTGAGTGAGAGCGCG	62.713	63.158	0.00	0.00	37.32	6.86
210	219	1.427592	GAATGGCTGAGTGAGAGCGC	61.428	60.000	0.00	0.00	37.32	5.92
211	220	0.809241	GGAATGGCTGAGTGAGAGCG	60.809	60.000	0.00	0.00	37.32	5.03
212	221	0.540923	AGGAATGGCTGAGTGAGAGC	59.459	55.000	0.00	0.00	35.57	4.09
213	222	1.743091	GCAGGAATGGCTGAGTGAGAG	60.743	57.143	0.00	0.00	0.00	3.20
214	223	0.251354	GCAGGAATGGCTGAGTGAGA	59.749	55.000	0.00	0.00	0.00	3.27
215	224	0.035725	TGCAGGAATGGCTGAGTGAG	60.036	55.000	0.00	0.00	0.00	3.51
216	225	0.622136	ATGCAGGAATGGCTGAGTGA	59.378	50.000	0.00	0.00	0.00	3.41
217	226	0.738975	CATGCAGGAATGGCTGAGTG	59.261	55.000	0.00	0.00	0.00	3.51
218	227	1.035932	GCATGCAGGAATGGCTGAGT	61.036	55.000	14.21	0.00	0.00	3.41
219	228	1.734137	GCATGCAGGAATGGCTGAG	59.266	57.895	14.21	0.00	0.00	3.35
265	280	2.370189	GGAATGGGAATCCGATCTGAGT	59.630	50.000	0.00	0.00	35.24	3.41
266	281	2.289945	GGGAATGGGAATCCGATCTGAG	60.290	54.545	0.00	0.00	37.87	3.35
267	282	1.699634	GGGAATGGGAATCCGATCTGA	59.300	52.381	0.00	0.00	37.87	3.27
268	283	1.421268	TGGGAATGGGAATCCGATCTG	59.579	52.381	0.00	0.00	37.87	2.90
269	284	1.421646	GTGGGAATGGGAATCCGATCT	59.578	52.381	0.00	0.00	37.87	2.75
306	333	1.079405	GAGGACGAACGGGAATGCA	60.079	57.895	0.00	0.00	0.00	3.96
395	422	1.719378	AGGAGGAGGAAGAAGAGTGGA	59.281	52.381	0.00	0.00	0.00	4.02
396	423	2.107366	GAGGAGGAGGAAGAAGAGTGG	58.893	57.143	0.00	0.00	0.00	4.00
482	522	1.003003	GCTTGCTTCTCCTCCTCACTT	59.997	52.381	0.00	0.00	0.00	3.16
485	543	0.612229	CTGCTTGCTTCTCCTCCTCA	59.388	55.000	0.00	0.00	0.00	3.86
491	549	1.202582	TCTCGTACTGCTTGCTTCTCC	59.797	52.381	0.00	0.00	0.00	3.71
500	558	2.092861	TCTTCCTAGCTCTCGTACTGCT	60.093	50.000	0.00	0.00	40.43	4.24
506	564	3.020984	CCTCTTTCTTCCTAGCTCTCGT	58.979	50.000	0.00	0.00	0.00	4.18
507	565	3.020984	ACCTCTTTCTTCCTAGCTCTCG	58.979	50.000	0.00	0.00	0.00	4.04
509	567	3.020984	CGACCTCTTTCTTCCTAGCTCT	58.979	50.000	0.00	0.00	0.00	4.09
510	568	2.100087	CCGACCTCTTTCTTCCTAGCTC	59.900	54.545	0.00	0.00	0.00	4.09
511	569	2.104170	CCGACCTCTTTCTTCCTAGCT	58.896	52.381	0.00	0.00	0.00	3.32
512	570	1.826096	ACCGACCTCTTTCTTCCTAGC	59.174	52.381	0.00	0.00	0.00	3.42
513	571	3.358118	AGACCGACCTCTTTCTTCCTAG	58.642	50.000	0.00	0.00	0.00	3.02
514	572	3.245158	TGAGACCGACCTCTTTCTTCCTA	60.245	47.826	5.79	0.00	34.38	2.94
515	573	2.172679	GAGACCGACCTCTTTCTTCCT	58.827	52.381	0.00	0.00	0.00	3.36
516	574	1.893801	TGAGACCGACCTCTTTCTTCC	59.106	52.381	5.79	0.00	34.38	3.46
517	575	2.559231	AGTGAGACCGACCTCTTTCTTC	59.441	50.000	5.79	0.00	34.38	2.87
518	576	2.559231	GAGTGAGACCGACCTCTTTCTT	59.441	50.000	5.79	0.00	34.38	2.52
519	577	2.164338	GAGTGAGACCGACCTCTTTCT	58.836	52.381	5.79	2.75	34.38	2.52
520	578	1.887198	TGAGTGAGACCGACCTCTTTC	59.113	52.381	5.79	4.45	34.38	2.62
521	579	1.996798	TGAGTGAGACCGACCTCTTT	58.003	50.000	5.79	0.00	34.38	2.52
522	580	2.096248	GATGAGTGAGACCGACCTCTT	58.904	52.381	5.79	0.00	34.38	2.85
534	592	1.451927	GGCGGCAATGGATGAGTGA	60.452	57.895	3.07	0.00	0.00	3.41
535	593	0.179048	TAGGCGGCAATGGATGAGTG	60.179	55.000	13.08	0.00	0.00	3.51
536	594	0.107456	CTAGGCGGCAATGGATGAGT	59.893	55.000	13.08	0.00	0.00	3.41
578	637	4.740822	CTTGGGTTGCCTCCGGGG	62.741	72.222	0.00	0.00	38.36	5.73
826	888	0.750911	GCTTGAAGGGATGAGCAGGG	60.751	60.000	0.00	0.00	35.29	4.45
989	1058	1.741770	GACGCCATCACCTCACCAC	60.742	63.158	0.00	0.00	0.00	4.16
991	1060	2.125106	GGACGCCATCACCTCACC	60.125	66.667	0.00	0.00	0.00	4.02
993	1062	3.298958	GAGGACGCCATCACCTCA	58.701	61.111	0.00	0.00	46.42	3.86
995	1064	2.284625	TGGAGGACGCCATCACCT	60.285	61.111	0.00	0.00	36.68	4.00
1625	1705	3.678548	CGGCTCTCCAGTTTTTGTAGTAC	59.321	47.826	0.00	0.00	0.00	2.73
1626	1706	3.322828	ACGGCTCTCCAGTTTTTGTAGTA	59.677	43.478	0.00	0.00	0.00	1.82
1627	1707	2.104281	ACGGCTCTCCAGTTTTTGTAGT	59.896	45.455	0.00	0.00	0.00	2.73
1628	1708	2.480419	CACGGCTCTCCAGTTTTTGTAG	59.520	50.000	0.00	0.00	0.00	2.74
1629	1709	2.489971	CACGGCTCTCCAGTTTTTGTA	58.510	47.619	0.00	0.00	0.00	2.41
1630	1710	1.308998	CACGGCTCTCCAGTTTTTGT	58.691	50.000	0.00	0.00	0.00	2.83
1631	1711	0.593128	CCACGGCTCTCCAGTTTTTG	59.407	55.000	0.00	0.00	0.00	2.44
1730	1811	6.374333	GCTTAAGAACCATCATCACTTGGTAA	59.626	38.462	6.67	0.00	45.44	2.85
1767	1848	3.073503	ACATAGGGGATCACATGATGGTG	59.926	47.826	0.00	0.00	40.16	4.17
1768	1849	3.330198	ACATAGGGGATCACATGATGGT	58.670	45.455	0.00	0.00	34.37	3.55
1769	1850	5.249163	TCTTACATAGGGGATCACATGATGG	59.751	44.000	0.00	0.00	34.37	3.51
1770	1851	6.364568	TCTTACATAGGGGATCACATGATG	57.635	41.667	0.00	0.00	34.37	3.07
1818	1907	0.455410	TGAACAACAACAGCACAGGC	59.545	50.000	0.00	0.00	41.61	4.85
1819	1908	2.016318	TCTGAACAACAACAGCACAGG	58.984	47.619	0.00	0.00	34.57	4.00
1821	1910	2.431454	TGTCTGAACAACAACAGCACA	58.569	42.857	0.00	0.00	34.57	4.57
1822	1911	3.485947	TTGTCTGAACAACAACAGCAC	57.514	42.857	0.00	0.00	40.45	4.40
1825	1914	4.095410	TGCTTTGTCTGAACAACAACAG	57.905	40.909	0.00	0.00	44.90	3.16
1828	1917	4.484236	CACTTGCTTTGTCTGAACAACAA	58.516	39.130	0.00	0.00	44.90	2.83
1960	2051	2.998670	AGCACATCACAATTCAGAGTCG	59.001	45.455	0.00	0.00	0.00	4.18
2056	2150	5.375417	TTTACCAGAGCACATCACAATTG	57.625	39.130	3.24	3.24	0.00	2.32
2145	2252	7.588512	AGCTGTGAAATGTGAATCTAGTTTTC	58.411	34.615	0.00	0.00	0.00	2.29
2215	2328	5.458069	GGGTGGAATATCATGAGGATTTCCA	60.458	44.000	19.51	19.51	43.29	3.53
2217	2330	5.474876	GTGGGTGGAATATCATGAGGATTTC	59.525	44.000	0.09	3.14	37.44	2.17
2243	2357	1.894699	ATTCCCTTCCCACTCTACCC	58.105	55.000	0.00	0.00	0.00	3.69
2423	2540	6.830873	AAATTGGAGAATCTCTTTCTGTGG	57.169	37.500	10.38	0.00	44.88	4.17
2478	2596	4.568359	CCTGTGGTACAATCAGAATTCTCG	59.432	45.833	4.57	1.84	44.16	4.04

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.