>input_sequence_77449
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----------------------------ATGGCGTCCTCCAGCGGGAGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGG
CGG---CGGCCATGGCGATGGCGGCCGCGTCGGGCACGGAGGAGGAGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAG
CGGATGCTCTCCAACCGGGAGTCGGCGCGCCGCTCGCGGATGCGCAAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGC
GGCGCACCTGCGCCGCGAGAACGCGCACGTCGCCGCCGCGCTCGGGCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCG
AGAACGCCGTCCTCCGCACCCAGGCCGCCGAGCTCGCCGCGCGCCTCCACTCGCTCAACGACATCATCGCCTGCATGAGC
GCCAGCAACAACACCGCCGCCGCCGTCGCGCTCACCGTCGCCGCAGCAGCCACCGCCACCACCGCCGACCCGCTC-----
-GGCTTCGACGGCGCGTCATTCGAGGACTTCCTCTTCAGATCCTCCCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCT
AG------------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G087400
GCATCCGCCGGTCACCCCACGGGGCCTACCGGCTACCCGAGCTACAGCAGTGGCGCCGAGCCAAGTGAAGTGAACGCGCC
TGCACATACGTACGGC----GGCATGGGCGC----GTGAGGCCAAGTGAGGTCAGCGTGATTTCCAGCTGAGCTGCTTCA
GCCTCGGATCCACTCCGACCGCCCGCACGTGCGACCGCCCTGCCCGCCTGCGCTCCCCGCGCTCTCACTCAGCCATTCCT
GCATGCCCGCTCTGCTGTGCT------CTGCACCGCTGCACTCAGATCG-----------GATTCCCATTCCCACCCTCC
ACCCA-CGGAATTGCATTCCCGTTCGTCCTCCCCTGAGCCACCGGCCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCA
ACACCCCCCTCCTCCTCCTCCTCCACTCTTCTTCCTCCTCCTCCACTCCATCCCTCCCCTGCACCGCAGCGAG-------
------CAGAGTCCGTCTAGAGAGAGAGAGAGAGAGAGAGAA------------------AGTGAGGAGGAGAAGCAAGC
AGTACGAGAGCTAGGAAGAAAGAGGTCGGTCTCACTCATCCATTGCCGCCTAGCTTGGTTGGTTGCTTCTCTT-CCCCCC
GGAGGCAACCCAAGAAAGCGGAGCGCACATGCTTCCCCGGGTCCGCCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGA
GATCCTACTCTCCGGGTTTATGATCAACTCCACACTCCGGCGCCGAACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCC
TCTACTGGTTCTATGTCTTCTCATAAATTACTCGCCCCCGCCGCCGCCCTCCCCCTCCTCTCCCTCCT---CCTCCTCCT
TTAGCCCCCCTGCTCATCCCTTCAAGCTCCCCTCGTCCCACACACTCGCTTACTCTCTCG---TCGTCGTCGTCGTCGCC
TC----TCTAGAGTCAGTCCGTAGCTGGTAATCAAGTCGATCTTTGGTTCTTGCAACAACAACAAAGGAAAGCAGAGAGT
GCTTGCCTGCTCGCTTGGTGGTGAGGTGATGGCGTCCTCCAGCGGGAGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGG
CGG---CGGCCATGGCGATGGCGGCCGCGTCGGGCACGGAGGAGGAGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAG
CGGATGCTCTCCAACCGGGAGTCGGCGCGCCGCTCGCGGATGCGCAAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGC
GGCGCACCTGCGCCGCGAGAACGCGCACGTCGCCGCCGCGCTCGGGCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCG
AGAACGCCGTCCTCCGCACCCAGGCCGCCGAGCTCGCCGCGCGCCTCCACTCGCTCAACGACATCATCGCCTGCATGAGC
GCCAGCAACAACACCGCCGCCGCCGTCGCGCTCACCGTCGCCGCAGCAGCCACCGCCACCACCGCCGACCCGCTC-----
-GGCTTCGACGGCGCGTCATTCGAGGACTTCCTCTTCAGATCCTCCCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCT
AGCACCCACGCCACGGCCATGGCAGCAGCACAAGAGCGA--GCGCAACAAAAGAGATCATCCATCTTTTTTCCTGATGCT
TCTGGTGTTTCAGGTTAATTACTAGTACTACAAAAACT-GGAGAGCCGTGGAGTTTTTACCGCACCTAACTAAGCTAGCT
GCTGGGGTTAATTAGTTTATAATTATCATGTGTAATCTGAACTGGTGTGTTTACCAAGTGATGATGGTTCTTAAGCTTAG
CATGCATCACC--------ATCATGTGATCCCCTATGTAAGAAGGAAGAAGCAGTAAGCTCTCTCTGCCTGTGCTGTTGT
TGTTC--AGACAAAGCAAGTGCCATATATAATTACTCTACTTACTTACTCATCATCTCATGATTTCCTTTTTCACTGTCA
TGAATGTATTTCTCTTATTTCTGCTACTTTGGAGCAGGTTTTTCCTTCTCCGACTCTGAATTGTGATGTGCTCTGCTAAA
GTGCCTTTTACTGCCATGAAT---GTCTTATTTCTGCTACCTTGGAGCAACTTTTTTTCTTCTGTCTTTCAATTGTGATG
TGCTCTGGTAAATAATGCCACTAATTACTATCTTGCTC----TGCCTGGCTTAAACTAGCTTCACATTCTCATTTC----
-----AAAAAAGAAAACTAGATTCACATTT--CACAGCTACTGCATAGTACATTCATGTGATGCCAATCAATGCA----C
AATGTTCTGG-AAATCCTCATGATATTCCACCCACAGGGTAGAGTGGGAAGGGAATAACCAGAGAGTGATAGCAGCCAGT
CTTTTGTGACTGGAATATATTGAGAATGGAATAAAAACAACTGGCCCATAGG--TTTTTTTCTTCATTCACCAATTTTGA
CAATATTTCTCAGAATTTT-CTCAGTACACAGCACCAACAGGTGGACGGTTGTGCATGCCCACAGAAAGAGATTCTCCAA
TTTACCCTCTATGTT-CCCCTCCACTATTGATTCCCGAGAATTCTGATTGTACCACA-GGGCACTTTTTCCTGGTTGTCA
TGC
>chr6B_4
---TCCACCAGTCACCACACGGGGCCTACCGCCTACC--AGCTACAGCAGTGGCGCCGGGCCAAGTGAAGTGAACGCGCC
TGCACCTGCGTAGTACGGCGGGCATGGGCGCGCGAGTGAGGCCAAGTGAGGTCAGCGTGATTTCCAGCCGAGCTGCCTCA
GCCTCGGATCCACTCCGACCGCCCGCACGTGCGACCGCCCCGCCC-------------------------------TCAT
TCCTGCCCGCTCTGCGCCGCTGCTCTGCTGCACCGCTGCCGCTGCAATCGATCGGGGGTCGATTCCCATTCCCACCCTCC
CCCCAGCGGAATCGCATTCCCGTTCGTCCTCCCCCGAGCCACCGGCCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCA
ACACCCCCCTCCTCCTCCTCC--CTCTCTTCTTCCTCCTG-----------CCCTCCTCTGCACCGCAGCGAGAGAGAGA
GACAGACAGAGTCCGTCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGGAAGGGAAGCAGGC
AGTGAGCTG-----------AGAGGTCGGCCGTCCACCCGTCCATTTCCCGGCCGGTGGAGCTCC---CTCTT-CTTCCC
GGAGGCAACCCAAGAAAGCGGAGCGCACATGCTTCCCCGGGTCCGCCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGA
GATCCTCCTCTCGGGGTTTATGATCAACTCCACACTCCGGCGCCGAACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCC
TCTACTGGTTCTATGTCTTCTCATAAACTACTCGCCCCCGCCGTCGCCCTCCCCCTCCTCTCCCTCCTCCTCCTCCTCCT
TTAGCCCTCCTGCTCATCCCTTCAAGCTCCCCTCGTCCCACACACTCGCTTACTCTCTCTCTCTCGTCGTCGTCGCAGTC
TC----TCTAGAGTCAGTCCGTAGCTGGTTACGATCC--ATCTTTGGTTCTTGCAACAACAACAAAGGAAAGCAGAGAGT
GCTTGTCTGCTCGCTTGCTTG-GTGGTGATGGCGTCCTCC------AGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGG
CGGGGGCGGCCATGGCGATGGCGGCCGCGTCGGGCACGGAGGAGGAGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAG
CGGATGCTCTCCAACCGGGAGTCGGCGCGCCGCTCGCGGATGCGCAAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGC
GGCGCACCTCCGCCGCGAGAACGCGCACGTCGCCGCCGCGCTCGGGCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCG
AGAACGCCGTCCTCCGCACCCAGGCCGCCGAGCTCGCCGCGCGCCTCCACTCGCTCAACGACATCATCGCCTGCATGAGC
GCCAACAACAACACCGCCGCCGCCGTCACGCTCACCGTCGCCGCAGCCGCCACCGCCACCACCGCCGACCCGCTCCTCGG
CGGCTTCGACGGCGCGTCATTCGAGGACTTCCTCTTCAGATCCTCCCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCT
AGCACCCACGCCACGGCCATGGCAGCAGCACAAGCACGAGCGCGCAACAAAAGAGATGATCCATCTTTTTTCCTGATGCT
TCTGGTGTTTCAGGTTAATTACTACAGTACAAAAAACTGGGAGAGCCGTGGAGTTTTTACCGCACCTAACTAAGCTAGCT
GCTGGGGTTAATTAGTTTATAATTATCATGTGTAATCTGAACTGGTGTGTGTACCAAGTGATGATGGTTCTTAAGCTTAG
CATGCATGCATCACCATCATGTGATC---CCCCTATGTAAGAAGGAAGAAGCAGTTAGCTCTCTCTCTCCCTG-TGCTGT
TGCTC--AGACAAAGCAAGTGCCATATATAATTACTCTACTTACTTACTCATCATCTCATGATTTCCTTTTTTACTGTCA
TGAATGTATTTCTCTTATTTCTGCTACTTTGGAGCAGGTTTTTCCTTCTCTGACTCTGAATTGTGATGTGCTCTGCTAAA
GTGCCTTTTACTGCCATGAAT---GTCTTATTTCTGCTACCTTGGAGCAACTTTTTTTCTTCTGTCTTTGAACTGTGATG
TGCTCTGGTAAATAATGCCACTAATTC---TCTTGCTC----TGCCTGGCTTAAACTAGTTTCACATTTTCATTCC----
----AAAAAAAAAAAACTAGCTTCACATTTTTCACAGCTACTG-ATAGTACATTCCTCTGATGCCAATCAATCAATGCAC
AATGTTCAGAAAAATCCTCATGATATTCCTCCCACAAGGTAGAGTGGGAAGGGAATAACCAGAGAGTGATAGCAGCCAGT
CTTTTGTGACTGGAATATATTCACAACAGAATAAAAACAACTGGCCCATGTTTTTTTTTTCCTTCATTCACCAATTGATA
GTACATTTCTCAGGATTTTTCAGTACGCGCAGCACCAACAGATGGACGGTTGTGCATGCACACAGAAAGAGATTCTCCGA
TTTACCCCCAACGTT-CCCCTCCACTAT----------------------------------------------------
---
>chr6A_4
---TCCGCCAGTCAGCACACGGGGCCTACCGCCTACC--AGCTACAGCAGTGGCGCCGAGCCAAGTGAAGTGAACGCACC
TG-----------GGC----GGCATGGGCGC----GTGAGGCCAAGTGAGGTCAGCGTGATTTCCAGCTGAGCTGATTCA
GCCTCGGATCCACTCCGACCGGCCGCACGTGCGACCGCGCTCCCCGCGCTCGT---------------TCAGCCATTCCT
GCATGCCCGCTCTGCTGTGCTGCCCATC----------------GATCG-----------GATTCCCATTCCCACCCTCC
CCCCAGCGGAATCACATTCCCGTTCGTCCACACCCGAGCCACCGGCCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCA
ACACCCCCCTCCTCCTCCTCC--CACTCTTCTTCCTCCTCCTCCACTCCAG--CTCCCCTGCACCGCAGCGAGAGAGA--
------CAGAGTCAGTCTAGAGAGGGA-----------------------------------------AGAGAAGCAGG-
--------G-----------AGAGGTCGGTG----TCATCCATTGCCGCCTAGCTTGGTTGGTTGCTTCTCTTCCTTCCC
GGAGGCAACCCAAGAAAGCGGAGCGCACATGCTTCCCCGGGTCCGCCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGA
GATCCTACTCTCCGGGTTTATGATCAACTCCACACTCCGGCGCCGAACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCC
TCTACTGGTTCTATGTCTTCTCATAAACTACTCGCCCCCATA---GCCCTCCCCCTCCTCTCCCTCCTCCTCCT------
TTAGCCCTCCTGCTCATCCCTTCAAGCTCCCCTCGTCCCACACACTCGCTTACTCTCTCG---TCGTCGTCGTCGCCTCT
CTAGAGTCTAGAGTCAGTCCGTAGCTGGTAATCAAGTCGATCTTTGGTTCTTGCAACAACAACAAAGGAAAGCAGGGAG-
---TGCCTGCCTGCTTGCTTG-GCGGCGATGGCGTCCTCC------AGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGG
CG---GCGGCCATGGCGATGGCGGCCGCGTCGGGCACGGAGGAGGAGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAG
CGGATGCTCTCCAACCGGGAGTCGGCGCGCCGCTCGCGGATGCGCAAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGC
GGCGCACCTGCGCCGCGAGAACGCGCACGTCGCCGCCGCGCTCGGCCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCG
AGAACGCCGTCCTCCGCACCCAGGCCGCCGAGCTCGCCGCGCGCCTCCACTCGCTCAACGACATCATCGCCTGCATGAGC
GCCAGCAACAACACCGCCGCCGCCGTCGCGCTCACCGTCGCCGCAGCAGCCACCGCCACCACCACCGACCCATTCCTCGG
CGGCTTCGACGGCGCGTCGCTCGACGACTACCTCTTCAGATCCTCCCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCT
AGCACCCACGCCACGGCCGTGGCAGCAGCACAAGAGCGA--GCGCAGCAAAAGAGATCATCT---TTTTTACCTGATGCT
TCTGGTGTTTCAGGTTAATTAAC----TACTACAAACTCGGAGAGCAGTGGAGTTTTTACCGCACCCAACTAAGCTAGCT
GCTGGGGTTAATTAGTTTATAATTATCATGTGTAATCTGAACTGGTGTGTGTACCAAGTGATGATGGTTCTTAAGCTTAG
CATGCATGCATCACCATCGATCATGTGATCCCCTATGTAAGAAGGAAGAAGCAGTAAG--CTCTCTCTCCCTG-TGCTGT
TGTTC--AGACAAAGCAAGTGCCATATATAATTACTCTACTTACTTACTCATCATCTCATGATTTCCTTTTTTACTGCCA
TGAATGTATTTCTCTTATTTGTGT-------------GTTTTTCCTTCTCTGGCTCTGAATTGTGATGTGCTCCGCTAAA
GTGCCTTTTACTGCCATGAATAATGTCTTATTTCTGCTACCTTGGAGCAGCTTCTTTTCTTCTGTCTTTGAATTGTGATG
TGCTCTGGTAAATAATCCCACTAGTTACTATCTTGCTCTGCATGCCTGGCTTAAACTAGTTTCACATTTTCATTTCATTT
CAAAAAAAAAAAAAAACTAGATTCACATTT--CACAGCTACTGCACAGTACATTCATGCGATGCCAATCAATGCATGCAC
AATGTTCAG-AAAATCCTCATGATATTCCACCCGCAAGGTAGAGTGGGGAGGGAATAACCAGAGAGTGATAGCAGCCGGT
CTTTTGTGACTGGAATATATTGAGAATGGAATAAAAACAACTGGCCCAGATCTTTCTTTTTTTTCATTCGCCAGTTTTGA
-TATATTTCTCATAATTTTTCTCAGTACACAGCACCAATAGGTGGACGGTTGTGCATGCACACAGAAAGAGATTCTCCAA
TTTACCCTCTATGCTCCCCCTCCACTATTGATTCCTGAGAATTCTGATTGTACCACAGGGGCACTTTTTCCTGCTTGTCA
TGC
>chr2B_1790
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-------------------------------------TAAGAAGGAAGAAGCAGTAAG--CTCTCTCTCCCTA-TGCTGT
TGTTCAGAGACAAAGCAAGTTCCATATATAATTACTCTACTTACTTACTCATCATCTCATGATTTCCTTTTCTACTGTCA
TGAATGTATTTCTCTCATTTCTGCTACTTTGGAGCAGGTTTTTCCTTCTCTGACTCTGAATTGTCATGTGCTCTGCTAAA
GTGCCTTTTACTGCCATGAAT---GTCTTATTTCTGCTACCTTGGAGCAACTTTTTTTCTTATGTCTTTGAATTGTGATG
TGCTCTGGTAAATAATGCCACTAATTA---TCTTGCTC----TGCCTGGCTTAAACTAGTTTCACATTTTCATTTCA---
---AAAAAT-AAAAAACTAGATTCACATTT--CATAGCTACTGCATAGTGCATTCATGTGATGCCAATCAATGCA----C
AATGCACAGAAAAATTCTCATGATATTTCTCCCACAAGGTAGAGTGGGAAGGGAATAACCAGAGAGTGATAGCAGCTAGT
CTTTTGTGCCTGGAATATATTCATAACAGAATAAAA--------------------------------------------
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>chr7B_1790
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-------------------------------------TAAGAAGGAAGAAGCAGTAAG--CTCTCTCTCCCTG-TGCTGT
TGTTCAGAGACAAAGCAAGTGCCATATATAATTACTCTACTTACTTACTCATCATCTCATGATTTCCTTTTCTACTATCA
TGAATGTATTTCTCTCATTTTTGCTACTTTGGACCAGGTTTTTCCTTCTCTGACTCTATATTGTCATGTTCTCTGCTAAA
GTGCCTTTTACTGCCATGAAT---GTCTTATTTCTGCTACCTTGGAGCAACTTTTTTTCTTCTGTCTTTGAATTGTGATG
TGCTCTGGTAAATAATGCCACTAATTA---TCTTGCTC----TGCCTGGCTTAAACTAGTTTCACATTTTCATTTCA---
---AAAAATAAAAAAACTAGATTCACATTT--CATAGCTACTGCATAGTACATTCATGTGATGCCAATCAATGCA----C
AATGCACAGAAAAATTCTCATGATATTCCTCCCACAAGGTATAGTGGGAAGGGAATAACCAGAGAGTGATAGCAGCCAGT
CTTTTGTCCCTGGAATATATTCATAACAGAATCAAAACTA----------------------------------------
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---------------------------------------------GATTGGACCATA-----------------------
---
>SNPs
SSS------S------S--------------S-----SS-----------------------------------------
-----S-S----S-------------------------------------------------------------------
-----------------------------------------------SSS--SSSSSSSSSSSSSSSS------------
---------------------------------------SSSSS------------------------------------
S-----------S---------------------S---------------------------------------------
---------------------SS---------------------------S-----------------------------
-----------------------------------------S--------------------S-----S--------S--
---SS-SSSSSSSSSSSSSS-----------SSS-----------------------------------------SS---
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---------------------------S---------------S------------------------------------
-------S-------------------------------------------------------------------S----
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-----------------S-S-S-S----------------SSSSSS----------------------------------
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------------------------SSSSSSS-------------------------------------------------
--------------------------------------------------S-----------------------------
-------SSSS-------------------------------------------------------SS-SS--S--S---
------------------------------------------------------------------------S-------
--------------------------------------------------S-----------------------------
---------------------------------------------------------------------S----------
-----------------------------------------------------------S--------S-----------
-----------S--------------------------------------------------------------------
-------S-S--------------------------S-------------------------------------------
--------------------------------------------------SS----------------------------
SS---------------------------------------------------------S--------------------
-----------------------------------S-------------------------------------S------
---
>forward_321
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-------------------------------------------------------------ATTCCCATTCCCACCCTCC
A-------------------------------------------------------------------------------
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>reverse_1907
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------------------------------------------------------------------GCCTGTGCTGTTGT
TGTTCA--------------------------------------------------------------------------
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