Multiple sequence alignment - TraesCS6D01G073400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G073400 chr6D 100.000 2237 0 0 1 2237 37530600 37532836 0.000000e+00 4132
1 TraesCS6D01G073400 chr6D 82.900 269 40 3 995 1257 37455047 37455315 1.030000e-58 237
2 TraesCS6D01G073400 chr6D 81.343 268 44 4 996 1257 37461000 37461267 1.740000e-51 213
3 TraesCS6D01G073400 chr6D 98.718 78 1 0 1 78 4665873 4665950 3.000000e-29 139
4 TraesCS6D01G073400 chr6B 89.756 1064 62 22 492 1525 87745772 87746818 0.000000e+00 1317
5 TraesCS6D01G073400 chr6B 94.675 338 16 2 78 414 87744353 87744689 7.080000e-145 523
6 TraesCS6D01G073400 chr6B 85.161 155 23 0 995 1149 87586312 87586466 2.300000e-35 159
7 TraesCS6D01G073400 chr6A 90.890 955 54 10 601 1525 48912511 48913462 0.000000e+00 1251
8 TraesCS6D01G073400 chr6A 88.748 711 66 9 1537 2235 48913831 48914539 0.000000e+00 857
9 TraesCS6D01G073400 chr6A 89.920 377 27 5 244 615 48912127 48912497 2.010000e-130 475
10 TraesCS6D01G073400 chr6A 93.863 277 15 2 78 353 48911499 48911774 1.240000e-112 416
11 TraesCS6D01G073400 chr6A 77.105 380 66 12 955 1315 48881130 48881507 1.350000e-47 200
12 TraesCS6D01G073400 chr1D 100.000 78 0 0 1 78 19906299 19906222 6.440000e-31 145
13 TraesCS6D01G073400 chr1D 98.750 80 1 0 1 80 139964778 139964857 2.320000e-30 143
14 TraesCS6D01G073400 chr7D 100.000 77 0 0 1 77 596108209 596108133 2.320000e-30 143
15 TraesCS6D01G073400 chr3D 98.765 81 0 1 1 80 416426041 416426121 2.320000e-30 143
16 TraesCS6D01G073400 chr5D 98.734 79 1 0 1 79 514204136 514204058 8.330000e-30 141
17 TraesCS6D01G073400 chr5D 93.478 92 4 2 1 92 524447129 524447218 3.880000e-28 135
18 TraesCS6D01G073400 chr2D 100.000 76 0 0 1 76 608650049 608650124 8.330000e-30 141
19 TraesCS6D01G073400 chr2D 98.718 78 1 0 1 78 569808455 569808378 3.000000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G073400 chr6D 37530600 37532836 2236 False 4132.00 4132 100.00000 1 2237 1 chr6D.!!$F4 2236
1 TraesCS6D01G073400 chr6B 87744353 87746818 2465 False 920.00 1317 92.21550 78 1525 2 chr6B.!!$F2 1447
2 TraesCS6D01G073400 chr6A 48911499 48914539 3040 False 749.75 1251 90.85525 78 2235 4 chr6A.!!$F2 2157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 2383 0.100682 TCTCATTCGCTGGTACGAGC 59.899 55.0 18.97 18.97 44.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 4100 3.988379 ACTCGTTGTGCATTTTCACAT 57.012 38.095 0.0 0.0 45.26 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.556733 TTTATTTCGTTAATAAGATGGCCGT 57.443 32.000 0.00 0.00 39.29 5.68
26 27 8.659925 TTTATTTCGTTAATAAGATGGCCGTA 57.340 30.769 0.00 0.00 39.29 4.02
27 28 8.836268 TTATTTCGTTAATAAGATGGCCGTAT 57.164 30.769 0.00 0.00 34.53 3.06
28 29 6.533819 TTTCGTTAATAAGATGGCCGTATG 57.466 37.500 0.00 0.00 0.00 2.39
29 30 3.991773 TCGTTAATAAGATGGCCGTATGC 59.008 43.478 0.00 0.00 40.16 3.14
30 31 3.743911 CGTTAATAAGATGGCCGTATGCA 59.256 43.478 0.00 0.00 43.89 3.96
31 32 4.391830 CGTTAATAAGATGGCCGTATGCAT 59.608 41.667 3.79 3.79 43.89 3.96
32 33 5.445939 CGTTAATAAGATGGCCGTATGCATC 60.446 44.000 0.19 0.00 43.89 3.91
33 34 3.701205 ATAAGATGGCCGTATGCATCA 57.299 42.857 0.19 0.00 43.89 3.07
34 35 2.574006 AAGATGGCCGTATGCATCAT 57.426 45.000 0.19 0.00 43.89 2.45
35 36 2.574006 AGATGGCCGTATGCATCATT 57.426 45.000 0.19 0.00 43.89 2.57
36 37 2.430465 AGATGGCCGTATGCATCATTC 58.570 47.619 0.19 0.00 43.89 2.67
37 38 2.039480 AGATGGCCGTATGCATCATTCT 59.961 45.455 0.19 0.00 43.89 2.40
38 39 1.596603 TGGCCGTATGCATCATTCTG 58.403 50.000 0.19 0.00 43.89 3.02
39 40 1.140652 TGGCCGTATGCATCATTCTGA 59.859 47.619 0.19 0.00 43.89 3.27
40 41 2.224597 TGGCCGTATGCATCATTCTGAT 60.225 45.455 0.19 0.00 43.89 2.90
49 50 1.880675 CATCATTCTGATGCAGAGGCC 59.119 52.381 0.00 0.00 46.37 5.19
50 51 0.179065 TCATTCTGATGCAGAGGCCG 60.179 55.000 0.00 0.00 41.75 6.13
51 52 1.147824 ATTCTGATGCAGAGGCCGG 59.852 57.895 0.00 0.00 41.75 6.13
52 53 2.335092 ATTCTGATGCAGAGGCCGGG 62.335 60.000 2.18 0.00 41.75 5.73
53 54 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
55 56 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
56 57 4.804420 ATGCAGAGGCCGGGGAGA 62.804 66.667 2.18 0.00 40.13 3.71
57 58 4.804420 TGCAGAGGCCGGGGAGAT 62.804 66.667 2.18 0.00 40.13 2.75
58 59 3.934962 GCAGAGGCCGGGGAGATC 61.935 72.222 2.18 0.00 0.00 2.75
59 60 3.237741 CAGAGGCCGGGGAGATCC 61.238 72.222 2.18 0.00 0.00 3.36
278 742 2.993899 ACTTTAGCACGGACGATTTCTG 59.006 45.455 0.00 0.00 36.55 3.02
282 746 2.218603 AGCACGGACGATTTCTGTTTT 58.781 42.857 0.00 0.00 41.51 2.43
371 835 7.254692 CGAATGAACTAGTGCATCAATGATCTT 60.255 37.037 17.04 0.00 0.00 2.40
401 868 4.332543 TGCCTTTGTCTCGCTTTATGTATG 59.667 41.667 0.00 0.00 0.00 2.39
432 1082 4.253685 CACCACGTCCAAATATCAAGTCT 58.746 43.478 0.00 0.00 0.00 3.24
433 1083 5.416083 CACCACGTCCAAATATCAAGTCTA 58.584 41.667 0.00 0.00 0.00 2.59
481 1131 6.148480 GCATATATGGCACCAGACTAAAAGAG 59.852 42.308 14.51 0.00 0.00 2.85
556 2028 3.990318 TGGCACATAGACAGAGATACG 57.010 47.619 0.00 0.00 0.00 3.06
615 2115 2.339418 TGACGAACGTGTTGTCAGTTT 58.661 42.857 12.18 0.00 37.69 2.66
643 2143 0.690762 AACAACACAGGCCCGATACT 59.309 50.000 0.00 0.00 0.00 2.12
664 2164 1.086696 ATGCATCGGGAAACAAGTCG 58.913 50.000 0.00 0.00 0.00 4.18
693 2196 7.979537 AGACTCAGTTTACAATGCGAATGTATA 59.020 33.333 0.00 0.00 33.55 1.47
698 2201 7.374228 CAGTTTACAATGCGAATGTATAAGCTG 59.626 37.037 0.00 0.00 33.55 4.24
701 2204 4.875536 ACAATGCGAATGTATAAGCTGTGA 59.124 37.500 0.00 0.00 0.00 3.58
815 2318 2.884012 CTGTCTGCACCATAACCACAAA 59.116 45.455 0.00 0.00 0.00 2.83
826 2329 1.485032 AACCACAAAGCGTCGTCGAC 61.485 55.000 15.51 15.51 39.71 4.20
830 2333 0.599204 ACAAAGCGTCGTCGACCAAT 60.599 50.000 19.29 2.94 39.71 3.16
873 2383 0.100682 TCTCATTCGCTGGTACGAGC 59.899 55.000 18.97 18.97 44.00 5.03
966 2501 2.739913 ACGTGCGTGCATATACTTGTTT 59.260 40.909 0.00 0.00 0.00 2.83
1022 2557 3.838271 GAGAGCCATGGCCGTCGA 61.838 66.667 33.14 0.00 43.17 4.20
1286 2821 0.304705 GAGCGTTGTGACTTGTGTGG 59.695 55.000 0.00 0.00 0.00 4.17
1287 2822 1.095228 AGCGTTGTGACTTGTGTGGG 61.095 55.000 0.00 0.00 0.00 4.61
1292 2827 1.205055 TGTGACTTGTGTGGGGTGTA 58.795 50.000 0.00 0.00 0.00 2.90
1333 2879 1.206578 GCGCGTGTTATGTGTGCTT 59.793 52.632 8.43 0.00 36.26 3.91
1334 2880 1.059657 GCGCGTGTTATGTGTGCTTG 61.060 55.000 8.43 0.00 36.26 4.01
1348 2894 1.226660 GCTTGTGTGTGGTGTGTGC 60.227 57.895 0.00 0.00 0.00 4.57
1395 2941 4.713824 AACGCTACTTGCACTCTACATA 57.286 40.909 0.00 0.00 43.06 2.29
1401 2947 5.463724 GCTACTTGCACTCTACATAATCCAC 59.536 44.000 0.00 0.00 42.31 4.02
1538 3442 0.108804 ATCTTGACGCCGTGATTCGT 60.109 50.000 0.00 0.00 42.09 3.85
1553 3457 4.855388 GTGATTCGTTATGTCTACACACGT 59.145 41.667 13.45 0.00 37.25 4.49
1563 3467 2.978489 GTCTACACACGTAAGCAGACAC 59.022 50.000 12.47 0.00 45.62 3.67
1575 3479 7.675270 CGTAAGCAGACACGTTAAGTATATT 57.325 36.000 0.00 0.00 33.56 1.28
1576 3480 7.762166 CGTAAGCAGACACGTTAAGTATATTC 58.238 38.462 0.00 0.00 33.56 1.75
1658 3563 6.016693 TCTCTGAAATATTCACGGTGCAAAAA 60.017 34.615 2.51 0.00 35.46 1.94
1713 3619 9.956720 GCATAATTTGTTAAGAACTGCTCATAT 57.043 29.630 0.00 0.00 0.00 1.78
1755 3661 4.209703 CACAGTTGTCAAATTGTTCATGCC 59.790 41.667 2.14 0.00 34.30 4.40
1756 3662 4.099881 ACAGTTGTCAAATTGTTCATGCCT 59.900 37.500 0.00 0.00 32.78 4.75
1762 3668 7.712264 TGTCAAATTGTTCATGCCTTTAAAG 57.288 32.000 8.32 8.32 0.00 1.85
1773 3683 9.503427 GTTCATGCCTTTAAAGTTATATGACAC 57.497 33.333 14.03 12.44 0.00 3.67
1786 3696 7.048512 AGTTATATGACACTGTAAAAGGAGGC 58.951 38.462 0.00 0.00 0.00 4.70
1789 3699 2.173782 TGACACTGTAAAAGGAGGCCAA 59.826 45.455 5.01 0.00 0.00 4.52
1880 3793 5.309323 TCACTCATTTCTAAATTTGGCCG 57.691 39.130 0.00 0.00 0.00 6.13
2020 3935 9.906660 ATATGTTTTACGACATTGAAACAATGT 57.093 25.926 23.81 23.81 42.93 2.71
2026 3941 5.221880 ACGACATTGAAACAATGTTCATGG 58.778 37.500 24.20 15.86 40.62 3.66
2157 4073 9.620660 ACATCTATTCGGTTAAAAATGTTCAAC 57.379 29.630 0.00 0.00 0.00 3.18
2160 4076 6.741448 ATTCGGTTAAAAATGTTCAACGTG 57.259 33.333 0.00 0.00 0.00 4.49
2167 4083 5.888412 AAAAATGTTCAACGTGCATCTTC 57.112 34.783 0.00 0.00 0.00 2.87
2177 4093 4.566545 ACGTGCATCTTCAAAATGTTCA 57.433 36.364 0.00 0.00 0.00 3.18
2184 4100 6.040278 TGCATCTTCAAAATGTTCAACCTGTA 59.960 34.615 0.00 0.00 0.00 2.74
2191 4107 7.776107 TCAAAATGTTCAACCTGTATGTGAAA 58.224 30.769 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.987649 ACGGCCATCTTATTAACGAAATAAAA 58.012 30.769 2.24 0.00 39.10 1.52
1 2 7.556733 ACGGCCATCTTATTAACGAAATAAA 57.443 32.000 2.24 0.00 39.10 1.40
2 3 8.714179 CATACGGCCATCTTATTAACGAAATAA 58.286 33.333 2.24 0.00 37.64 1.40
3 4 7.148540 GCATACGGCCATCTTATTAACGAAATA 60.149 37.037 2.24 0.00 36.11 1.40
4 5 6.348213 GCATACGGCCATCTTATTAACGAAAT 60.348 38.462 2.24 0.00 36.11 2.17
5 6 5.049954 GCATACGGCCATCTTATTAACGAAA 60.050 40.000 2.24 0.00 36.11 3.46
6 7 4.449743 GCATACGGCCATCTTATTAACGAA 59.550 41.667 2.24 0.00 36.11 3.85
7 8 3.991773 GCATACGGCCATCTTATTAACGA 59.008 43.478 2.24 0.00 36.11 3.85
8 9 3.743911 TGCATACGGCCATCTTATTAACG 59.256 43.478 2.24 0.00 43.89 3.18
9 10 5.411361 TGATGCATACGGCCATCTTATTAAC 59.589 40.000 2.24 0.00 43.89 2.01
10 11 5.555966 TGATGCATACGGCCATCTTATTAA 58.444 37.500 2.24 0.00 43.89 1.40
11 12 5.159273 TGATGCATACGGCCATCTTATTA 57.841 39.130 2.24 0.00 43.89 0.98
12 13 4.019792 TGATGCATACGGCCATCTTATT 57.980 40.909 2.24 0.00 43.89 1.40
13 14 3.701205 TGATGCATACGGCCATCTTAT 57.299 42.857 2.24 0.00 43.89 1.73
14 15 3.701205 ATGATGCATACGGCCATCTTA 57.299 42.857 2.24 0.00 43.89 2.10
15 16 2.574006 ATGATGCATACGGCCATCTT 57.426 45.000 2.24 0.00 43.89 2.40
16 17 2.039480 AGAATGATGCATACGGCCATCT 59.961 45.455 2.24 0.00 43.89 2.90
17 18 2.161012 CAGAATGATGCATACGGCCATC 59.839 50.000 2.24 0.00 39.87 3.51
18 19 2.156917 CAGAATGATGCATACGGCCAT 58.843 47.619 2.24 0.00 39.87 4.40
19 20 1.140652 TCAGAATGATGCATACGGCCA 59.859 47.619 2.24 0.00 42.56 5.36
20 21 1.882912 TCAGAATGATGCATACGGCC 58.117 50.000 0.00 0.00 42.56 6.13
32 33 1.164662 CCGGCCTCTGCATCAGAATG 61.165 60.000 0.00 0.00 40.18 2.67
33 34 1.147824 CCGGCCTCTGCATCAGAAT 59.852 57.895 0.00 0.00 40.18 2.40
34 35 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
35 36 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
36 37 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
38 39 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
39 40 4.804420 TCTCCCCGGCCTCTGCAT 62.804 66.667 0.00 0.00 40.13 3.96
40 41 4.804420 ATCTCCCCGGCCTCTGCA 62.804 66.667 0.00 0.00 40.13 4.41
41 42 3.934962 GATCTCCCCGGCCTCTGC 61.935 72.222 0.00 0.00 0.00 4.26
42 43 3.237741 GGATCTCCCCGGCCTCTG 61.238 72.222 0.00 0.00 0.00 3.35
73 74 4.943705 ACTGCGGATGACATCTACATTTTT 59.056 37.500 14.95 0.00 0.00 1.94
74 75 4.517285 ACTGCGGATGACATCTACATTTT 58.483 39.130 14.95 0.11 0.00 1.82
75 76 4.142609 ACTGCGGATGACATCTACATTT 57.857 40.909 14.95 2.18 0.00 2.32
76 77 3.827008 ACTGCGGATGACATCTACATT 57.173 42.857 14.95 5.55 0.00 2.71
258 260 2.993899 ACAGAAATCGTCCGTGCTAAAG 59.006 45.455 0.00 0.00 0.00 1.85
282 746 8.876181 TCCATAATAGATCTTTCGGAATACCAA 58.124 33.333 0.00 0.00 35.59 3.67
320 784 7.634817 CGACCGTTTGATCACTTTGATTTATAC 59.365 37.037 0.00 0.00 37.20 1.47
371 835 1.266718 GCGAGACAAAGGCATGTTTCA 59.733 47.619 12.28 0.00 34.92 2.69
401 868 0.810823 TGGACGTGGTGGTTCGTTTC 60.811 55.000 0.00 0.00 40.39 2.78
432 1082 2.264005 TGCTTTCTTTCCGGCACTTA 57.736 45.000 0.00 0.00 0.00 2.24
433 1083 3.109847 TGCTTTCTTTCCGGCACTT 57.890 47.368 0.00 0.00 0.00 3.16
513 1985 5.070981 CAGGGCAGGATATAACATATCGGAT 59.929 44.000 0.00 0.00 0.00 4.18
514 1986 4.405680 CAGGGCAGGATATAACATATCGGA 59.594 45.833 1.20 0.00 0.00 4.55
515 1987 4.443457 CCAGGGCAGGATATAACATATCGG 60.443 50.000 1.20 0.00 0.00 4.18
516 1988 4.697514 CCAGGGCAGGATATAACATATCG 58.302 47.826 1.20 0.00 0.00 2.92
517 1989 4.455606 GCCAGGGCAGGATATAACATATC 58.544 47.826 5.20 0.00 41.49 1.63
518 1990 4.510167 GCCAGGGCAGGATATAACATAT 57.490 45.455 5.20 0.00 41.49 1.78
615 2115 3.131400 GGGCCTGTGTTGTTTACTGAAAA 59.869 43.478 0.84 0.00 0.00 2.29
643 2143 2.083774 GACTTGTTTCCCGATGCATGA 58.916 47.619 2.46 0.00 0.00 3.07
664 2164 2.673368 CGCATTGTAAACTGAGTCTCCC 59.327 50.000 0.00 0.00 0.00 4.30
693 2196 2.281070 CCTGCACCGTCACAGCTT 60.281 61.111 0.00 0.00 32.37 3.74
698 2201 3.490759 CATCGCCTGCACCGTCAC 61.491 66.667 2.40 0.00 0.00 3.67
785 2288 1.203137 TGGTGCAGACAGGTACCTAGT 60.203 52.381 15.80 15.00 43.17 2.57
786 2289 1.557099 TGGTGCAGACAGGTACCTAG 58.443 55.000 15.80 11.72 43.17 3.02
815 2318 1.002684 GATCTATTGGTCGACGACGCT 60.003 52.381 20.92 10.70 39.58 5.07
826 2329 7.595819 AGAAAGGTAGAGAGTGATCTATTGG 57.404 40.000 0.00 0.00 34.41 3.16
830 2333 8.333235 AGAAGAAGAAAGGTAGAGAGTGATCTA 58.667 37.037 0.00 0.00 0.00 1.98
873 2383 1.292992 GGAAAATAGTACGGGCACGG 58.707 55.000 15.46 0.00 46.48 4.94
881 2391 0.807275 ACGGCCGCGGAAAATAGTAC 60.807 55.000 33.48 7.28 0.00 2.73
953 2488 8.379902 GCAAAATACCAACAAACAAGTATATGC 58.620 33.333 0.00 0.00 34.19 3.14
966 2501 3.057596 GCACTAGCTGCAAAATACCAACA 60.058 43.478 1.02 0.00 46.29 3.33
1025 2560 4.081030 CGTCAACGGCAGCAGCAG 62.081 66.667 2.65 0.52 44.61 4.24
1270 2805 0.746563 ACCCCACACAAGTCACAACG 60.747 55.000 0.00 0.00 0.00 4.10
1286 2821 0.101939 GCTGGTAGCTACGTACACCC 59.898 60.000 17.48 2.62 38.45 4.61
1287 2822 3.637297 GCTGGTAGCTACGTACACC 57.363 57.895 17.48 5.96 38.45 4.16
1333 2879 0.808060 CTACGCACACACCACACACA 60.808 55.000 0.00 0.00 0.00 3.72
1334 2880 1.931551 CTACGCACACACCACACAC 59.068 57.895 0.00 0.00 0.00 3.82
1527 3074 7.174121 GTGTGTAGACATAACGAATCACGGC 62.174 48.000 0.00 0.00 39.39 5.68
1528 3075 4.264614 GTGTGTAGACATAACGAATCACGG 59.735 45.833 0.00 0.00 39.39 4.94
1531 3078 5.050644 ACGTGTGTAGACATAACGAATCA 57.949 39.130 20.75 0.00 39.54 2.57
1538 3442 5.048573 TGTCTGCTTACGTGTGTAGACATAA 60.049 40.000 26.36 13.42 45.80 1.90
1553 3457 9.865321 AAAGAATATACTTAACGTGTCTGCTTA 57.135 29.630 0.00 0.00 0.00 3.09
1625 3530 8.883731 ACCGTGAATATTTCAGAGATTTAAGTG 58.116 33.333 0.00 0.00 41.01 3.16
1634 3539 4.944962 TTGCACCGTGAATATTTCAGAG 57.055 40.909 1.65 0.00 41.01 3.35
1662 3567 7.739911 GCGAACAAAATTTTACATTCCATGAAC 59.260 33.333 2.44 0.00 0.00 3.18
1726 3632 7.490840 TGAACAATTTGACAACTGTGATGAAT 58.509 30.769 2.79 0.00 0.00 2.57
1736 3642 5.989551 AAAGGCATGAACAATTTGACAAC 57.010 34.783 2.79 1.17 0.00 3.32
1762 3668 6.260271 GGCCTCCTTTTACAGTGTCATATAAC 59.740 42.308 0.00 0.00 0.00 1.89
1773 3683 4.039124 ACATTGTTTGGCCTCCTTTTACAG 59.961 41.667 3.32 0.00 0.00 2.74
1857 3770 5.242838 ACGGCCAAATTTAGAAATGAGTGAA 59.757 36.000 2.24 0.00 0.00 3.18
1864 3777 5.659440 ATGTCACGGCCAAATTTAGAAAT 57.341 34.783 2.24 0.00 0.00 2.17
1880 3793 9.515020 TTCATGAACACTTTTAGAAAATGTCAC 57.485 29.630 3.38 0.00 0.00 3.67
1997 3912 7.755373 TGAACATTGTTTCAATGTCGTAAAACA 59.245 29.630 22.48 3.68 39.73 2.83
2004 3919 5.459768 TCCATGAACATTGTTTCAATGTCG 58.540 37.500 22.48 13.86 39.73 4.35
2006 3921 7.673180 AGATTCCATGAACATTGTTTCAATGT 58.327 30.769 18.44 18.44 42.19 2.71
2112 4028 7.789273 AGATGTTGAACAATTGCAAATTTCA 57.211 28.000 1.71 9.78 0.00 2.69
2126 4042 9.620660 ACATTTTTAACCGAATAGATGTTGAAC 57.379 29.630 0.00 0.00 0.00 3.18
2135 4051 7.408921 GCACGTTGAACATTTTTAACCGAATAG 60.409 37.037 0.00 0.00 29.36 1.73
2157 4073 4.148696 GGTTGAACATTTTGAAGATGCACG 59.851 41.667 0.00 0.00 0.00 5.34
2160 4076 5.291971 ACAGGTTGAACATTTTGAAGATGC 58.708 37.500 0.00 0.00 0.00 3.91
2167 4083 8.417780 TTTTCACATACAGGTTGAACATTTTG 57.582 30.769 0.00 0.00 0.00 2.44
2177 4093 5.288804 GTTGTGCATTTTCACATACAGGTT 58.711 37.500 0.00 0.00 45.26 3.50
2184 4100 3.988379 ACTCGTTGTGCATTTTCACAT 57.012 38.095 0.00 0.00 45.26 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.