Multiple sequence alignment - TraesCS6D01G073000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G073000 | chr6D | 100.000 | 2228 | 0 | 0 | 1 | 2228 | 37414236 | 37416463 | 0.000000e+00 | 4115.0 |
1 | TraesCS6D01G073000 | chr6D | 81.704 | 399 | 45 | 19 | 1672 | 2056 | 255024557 | 255024941 | 7.730000e-80 | 307.0 |
2 | TraesCS6D01G073000 | chr6A | 92.945 | 1304 | 78 | 13 | 505 | 1805 | 48651586 | 48652878 | 0.000000e+00 | 1886.0 |
3 | TraesCS6D01G073000 | chr6A | 88.161 | 473 | 34 | 14 | 1 | 463 | 48651124 | 48651584 | 5.410000e-151 | 544.0 |
4 | TraesCS6D01G073000 | chr6A | 89.100 | 211 | 18 | 4 | 1672 | 1878 | 330045764 | 330045555 | 7.890000e-65 | 257.0 |
5 | TraesCS6D01G073000 | chr6A | 96.129 | 155 | 5 | 1 | 2075 | 2228 | 48657069 | 48657223 | 3.670000e-63 | 252.0 |
6 | TraesCS6D01G073000 | chr6A | 85.227 | 88 | 12 | 1 | 1156 | 1242 | 35946508 | 35946421 | 3.050000e-14 | 89.8 |
7 | TraesCS6D01G073000 | chr6B | 96.064 | 813 | 27 | 4 | 603 | 1415 | 87507286 | 87508093 | 0.000000e+00 | 1319.0 |
8 | TraesCS6D01G073000 | chr6B | 93.212 | 604 | 31 | 8 | 15 | 613 | 87501201 | 87501799 | 0.000000e+00 | 880.0 |
9 | TraesCS6D01G073000 | chr6B | 82.902 | 386 | 41 | 14 | 1683 | 2056 | 352066398 | 352066026 | 7.670000e-85 | 324.0 |
10 | TraesCS6D01G073000 | chr6B | 81.663 | 409 | 41 | 24 | 1664 | 2056 | 460499210 | 460498820 | 2.150000e-80 | 309.0 |
11 | TraesCS6D01G073000 | chr3D | 83.467 | 375 | 35 | 17 | 1676 | 2032 | 132924799 | 132925164 | 7.670000e-85 | 324.0 |
12 | TraesCS6D01G073000 | chr7D | 91.525 | 236 | 16 | 3 | 1453 | 1688 | 578708531 | 578708300 | 2.760000e-84 | 322.0 |
13 | TraesCS6D01G073000 | chr7D | 90.708 | 226 | 18 | 2 | 1452 | 1677 | 617060779 | 617060557 | 4.650000e-77 | 298.0 |
14 | TraesCS6D01G073000 | chr7D | 90.769 | 195 | 15 | 3 | 1678 | 1871 | 578708518 | 578708326 | 7.890000e-65 | 257.0 |
15 | TraesCS6D01G073000 | chr7D | 83.916 | 143 | 17 | 6 | 1914 | 2052 | 581455186 | 581455046 | 4.990000e-27 | 132.0 |
16 | TraesCS6D01G073000 | chr2A | 82.507 | 383 | 42 | 14 | 1678 | 2049 | 100885209 | 100884841 | 1.660000e-81 | 313.0 |
17 | TraesCS6D01G073000 | chr3A | 82.216 | 388 | 43 | 16 | 1678 | 2054 | 419475542 | 419475170 | 5.970000e-81 | 311.0 |
18 | TraesCS6D01G073000 | chr3A | 81.436 | 404 | 42 | 21 | 1666 | 2053 | 582938290 | 582938676 | 1.290000e-77 | 300.0 |
19 | TraesCS6D01G073000 | chr3A | 89.956 | 229 | 19 | 3 | 1453 | 1681 | 582938292 | 582938516 | 2.160000e-75 | 292.0 |
20 | TraesCS6D01G073000 | chr3A | 84.244 | 311 | 27 | 17 | 1664 | 1968 | 632636740 | 632636446 | 1.300000e-72 | 283.0 |
21 | TraesCS6D01G073000 | chr7A | 82.216 | 388 | 42 | 16 | 1678 | 2052 | 131127499 | 131127126 | 2.150000e-80 | 309.0 |
22 | TraesCS6D01G073000 | chr7A | 90.870 | 230 | 17 | 3 | 1452 | 1681 | 700429551 | 700429326 | 2.780000e-79 | 305.0 |
23 | TraesCS6D01G073000 | chr7A | 82.514 | 366 | 37 | 18 | 1678 | 2030 | 240737358 | 240737007 | 1.670000e-76 | 296.0 |
24 | TraesCS6D01G073000 | chr7A | 90.000 | 230 | 19 | 3 | 1452 | 1681 | 498486813 | 498487038 | 6.020000e-76 | 294.0 |
25 | TraesCS6D01G073000 | chr7A | 90.000 | 230 | 19 | 3 | 1452 | 1681 | 581364713 | 581364488 | 6.020000e-76 | 294.0 |
26 | TraesCS6D01G073000 | chr5A | 81.265 | 411 | 43 | 20 | 1664 | 2055 | 688864915 | 688864520 | 3.600000e-78 | 302.0 |
27 | TraesCS6D01G073000 | chr5A | 90.435 | 230 | 18 | 3 | 1452 | 1681 | 626074034 | 626074259 | 1.290000e-77 | 300.0 |
28 | TraesCS6D01G073000 | chr5A | 82.857 | 350 | 35 | 16 | 1695 | 2034 | 602475037 | 602474703 | 7.780000e-75 | 291.0 |
29 | TraesCS6D01G073000 | chr5A | 80.829 | 386 | 47 | 18 | 1678 | 2051 | 485928849 | 485929219 | 6.060000e-71 | 278.0 |
30 | TraesCS6D01G073000 | chr1A | 90.351 | 228 | 18 | 3 | 1454 | 1681 | 481273985 | 481274208 | 1.670000e-76 | 296.0 |
31 | TraesCS6D01G073000 | chr5D | 81.443 | 388 | 43 | 19 | 1678 | 2049 | 550581735 | 550581361 | 7.780000e-75 | 291.0 |
32 | TraesCS6D01G073000 | chr2D | 81.793 | 357 | 39 | 19 | 1691 | 2032 | 569320253 | 569319908 | 2.180000e-70 | 276.0 |
33 | TraesCS6D01G073000 | chr2D | 89.394 | 66 | 7 | 0 | 2051 | 2116 | 530392149 | 530392084 | 1.420000e-12 | 84.2 |
34 | TraesCS6D01G073000 | chr2B | 81.117 | 376 | 39 | 20 | 1691 | 2051 | 653261060 | 653261418 | 2.820000e-69 | 272.0 |
35 | TraesCS6D01G073000 | chr4A | 80.909 | 220 | 29 | 8 | 1905 | 2113 | 473289799 | 473290016 | 6.370000e-36 | 161.0 |
36 | TraesCS6D01G073000 | chr4A | 81.250 | 112 | 18 | 3 | 539 | 648 | 597735364 | 597735474 | 1.100000e-13 | 87.9 |
37 | TraesCS6D01G073000 | chr4A | 89.394 | 66 | 7 | 0 | 2051 | 2116 | 45839487 | 45839422 | 1.420000e-12 | 84.2 |
38 | TraesCS6D01G073000 | chrUn | 78.673 | 211 | 44 | 1 | 1033 | 1242 | 100515613 | 100515823 | 2.980000e-29 | 139.0 |
39 | TraesCS6D01G073000 | chr3B | 87.719 | 114 | 11 | 2 | 2116 | 2228 | 822185511 | 822185622 | 1.800000e-26 | 130.0 |
40 | TraesCS6D01G073000 | chr3B | 91.304 | 69 | 6 | 0 | 2051 | 2119 | 175746407 | 175746339 | 6.550000e-16 | 95.3 |
41 | TraesCS6D01G073000 | chr4B | 82.051 | 117 | 20 | 1 | 539 | 654 | 10493903 | 10493787 | 5.060000e-17 | 99.0 |
42 | TraesCS6D01G073000 | chr4B | 89.394 | 66 | 6 | 1 | 2051 | 2116 | 142915600 | 142915536 | 5.100000e-12 | 82.4 |
43 | TraesCS6D01G073000 | chr4D | 90.476 | 63 | 6 | 0 | 2051 | 2113 | 474686451 | 474686513 | 1.420000e-12 | 84.2 |
44 | TraesCS6D01G073000 | chr4D | 89.231 | 65 | 7 | 0 | 2052 | 2116 | 100563942 | 100563878 | 5.100000e-12 | 82.4 |
45 | TraesCS6D01G073000 | chr7B | 88.235 | 68 | 8 | 0 | 2049 | 2116 | 505470257 | 505470190 | 5.100000e-12 | 82.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G073000 | chr6D | 37414236 | 37416463 | 2227 | False | 4115 | 4115 | 100.000 | 1 | 2228 | 1 | chr6D.!!$F1 | 2227 |
1 | TraesCS6D01G073000 | chr6A | 48651124 | 48652878 | 1754 | False | 1215 | 1886 | 90.553 | 1 | 1805 | 2 | chr6A.!!$F2 | 1804 |
2 | TraesCS6D01G073000 | chr6B | 87507286 | 87508093 | 807 | False | 1319 | 1319 | 96.064 | 603 | 1415 | 1 | chr6B.!!$F2 | 812 |
3 | TraesCS6D01G073000 | chr6B | 87501201 | 87501799 | 598 | False | 880 | 880 | 93.212 | 15 | 613 | 1 | chr6B.!!$F1 | 598 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
316 | 324 | 1.243902 | CGCTAAACTTGGGCCTCAAA | 58.756 | 50.0 | 4.53 | 0.0 | 34.56 | 2.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2145 | 2159 | 0.034767 | ATGAGGTGGCATGTGTGGAG | 60.035 | 55.0 | 0.0 | 0.0 | 0.0 | 3.86 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
253 | 259 | 3.312973 | CGCTAAAGTTGTGTGGGTTTACA | 59.687 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
316 | 324 | 1.243902 | CGCTAAACTTGGGCCTCAAA | 58.756 | 50.000 | 4.53 | 0.00 | 34.56 | 2.69 |
423 | 434 | 6.197842 | GCTGCTATGCTTGATTGTATGTTTTC | 59.802 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
452 | 463 | 5.151389 | AGTTTAAGCGAAAACGCTAAATGG | 58.849 | 37.500 | 16.90 | 0.00 | 45.26 | 3.16 |
477 | 488 | 7.486870 | GGGGCTTAACTTTTGTATATGTTTTCG | 59.513 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
507 | 518 | 5.532425 | TGGATGAGCCACCAGTAAATGGG | 62.532 | 52.174 | 0.00 | 0.00 | 43.38 | 4.00 |
525 | 536 | 7.912778 | AAATGGGATAGCCTGCTATTTAAAA | 57.087 | 32.000 | 12.62 | 0.00 | 39.15 | 1.52 |
696 | 707 | 5.163395 | TGTGGCAGTATATTATGACGGACAA | 60.163 | 40.000 | 0.00 | 0.00 | 30.26 | 3.18 |
924 | 936 | 5.659463 | GTTGCCTGCAATCCATAAATACAA | 58.341 | 37.500 | 7.94 | 0.00 | 38.28 | 2.41 |
931 | 943 | 9.283768 | CCTGCAATCCATAAATACAAGTATGTA | 57.716 | 33.333 | 0.00 | 0.00 | 45.67 | 2.29 |
1025 | 1037 | 1.003812 | TGGAGGTAACAATGGTTCCGG | 59.996 | 52.381 | 0.00 | 0.00 | 38.45 | 5.14 |
1306 | 1318 | 5.122239 | TGAATAATAATGCCATAGCGCTGTC | 59.878 | 40.000 | 22.90 | 2.55 | 44.31 | 3.51 |
1318 | 1330 | 1.068083 | CGCTGTCGCCCTCATGTAT | 59.932 | 57.895 | 0.00 | 0.00 | 0.00 | 2.29 |
1345 | 1357 | 1.278238 | GTTCCCTGTACTCGATTGCG | 58.722 | 55.000 | 0.00 | 0.00 | 39.35 | 4.85 |
1358 | 1370 | 2.200170 | GATTGCGCTGGCTCGGTTTT | 62.200 | 55.000 | 9.73 | 0.00 | 40.82 | 2.43 |
1482 | 1494 | 8.840200 | TCTATATCTAAATAGCTAACCCCCAG | 57.160 | 38.462 | 0.00 | 0.00 | 30.79 | 4.45 |
1492 | 1504 | 5.369409 | AGCTAACCCCCAGTAACTATTTC | 57.631 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
1525 | 1537 | 3.062122 | AGCATGACACATCATCACACA | 57.938 | 42.857 | 0.00 | 0.00 | 44.13 | 3.72 |
1541 | 1553 | 4.862350 | TCACACAACATGCATGAGAAAAG | 58.138 | 39.130 | 32.75 | 17.73 | 0.00 | 2.27 |
1553 | 1566 | 1.152333 | AGAAAAGGCCCACCCCAAC | 60.152 | 57.895 | 0.00 | 0.00 | 36.11 | 3.77 |
1569 | 1582 | 4.524714 | ACCCCAACTATCATATGTCTCTCG | 59.475 | 45.833 | 1.90 | 0.00 | 0.00 | 4.04 |
1582 | 1595 | 2.166254 | TGTCTCTCGACATGCAAGCATA | 59.834 | 45.455 | 7.29 | 0.00 | 44.85 | 3.14 |
1583 | 1596 | 3.181472 | TGTCTCTCGACATGCAAGCATAT | 60.181 | 43.478 | 7.29 | 0.00 | 44.85 | 1.78 |
1598 | 1611 | 6.997476 | TGCAAGCATATACCACTTCATTATGA | 59.003 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
1600 | 1613 | 7.041167 | GCAAGCATATACCACTTCATTATGACA | 60.041 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
1608 | 1621 | 5.653330 | ACCACTTCATTATGACATGCATGAA | 59.347 | 36.000 | 32.75 | 19.89 | 37.87 | 2.57 |
1732 | 1746 | 5.333299 | ACATGCAAGCATACAACATCATT | 57.667 | 34.783 | 7.29 | 0.00 | 34.91 | 2.57 |
1733 | 1747 | 5.106442 | ACATGCAAGCATACAACATCATTG | 58.894 | 37.500 | 7.29 | 0.00 | 34.91 | 2.82 |
1736 | 1750 | 3.305094 | GCAAGCATACAACATCATTGCAC | 59.695 | 43.478 | 0.00 | 0.00 | 40.83 | 4.57 |
1757 | 1771 | 1.188863 | ACATGCATGAGAAAAGGCCC | 58.811 | 50.000 | 32.75 | 0.00 | 0.00 | 5.80 |
1758 | 1772 | 1.187974 | CATGCATGAGAAAAGGCCCA | 58.812 | 50.000 | 22.59 | 0.00 | 0.00 | 5.36 |
1763 | 1777 | 0.332972 | ATGAGAAAAGGCCCACCCTC | 59.667 | 55.000 | 0.00 | 2.19 | 45.62 | 4.30 |
1780 | 1794 | 5.184864 | CCACCCTCACTATCATATGTCTCTC | 59.815 | 48.000 | 1.90 | 0.00 | 0.00 | 3.20 |
1785 | 1799 | 7.039152 | CCCTCACTATCATATGTCTCTCAACAT | 60.039 | 40.741 | 1.90 | 0.00 | 42.41 | 2.71 |
1807 | 1821 | 2.809446 | CAAGCATGCCACTTCATCATG | 58.191 | 47.619 | 15.66 | 0.00 | 40.23 | 3.07 |
1808 | 1822 | 2.425668 | CAAGCATGCCACTTCATCATGA | 59.574 | 45.455 | 15.66 | 0.00 | 39.80 | 3.07 |
1809 | 1823 | 2.022195 | AGCATGCCACTTCATCATGAC | 58.978 | 47.619 | 15.66 | 0.00 | 39.80 | 3.06 |
1810 | 1824 | 1.746787 | GCATGCCACTTCATCATGACA | 59.253 | 47.619 | 6.36 | 0.00 | 39.80 | 3.58 |
1811 | 1825 | 2.361119 | GCATGCCACTTCATCATGACAT | 59.639 | 45.455 | 6.36 | 0.00 | 39.80 | 3.06 |
1812 | 1826 | 3.795488 | GCATGCCACTTCATCATGACATG | 60.795 | 47.826 | 6.36 | 9.28 | 39.80 | 3.21 |
1813 | 1827 | 1.746787 | TGCCACTTCATCATGACATGC | 59.253 | 47.619 | 10.76 | 0.00 | 0.00 | 4.06 |
1814 | 1828 | 1.746787 | GCCACTTCATCATGACATGCA | 59.253 | 47.619 | 10.76 | 0.00 | 0.00 | 3.96 |
1815 | 1829 | 2.361119 | GCCACTTCATCATGACATGCAT | 59.639 | 45.455 | 10.76 | 0.00 | 37.85 | 3.96 |
1826 | 1840 | 4.978083 | ATGACATGCATGGAAAGAAGAC | 57.022 | 40.909 | 29.41 | 9.95 | 35.42 | 3.01 |
1827 | 1841 | 3.753815 | TGACATGCATGGAAAGAAGACA | 58.246 | 40.909 | 29.41 | 12.07 | 0.00 | 3.41 |
1828 | 1842 | 3.503363 | TGACATGCATGGAAAGAAGACAC | 59.497 | 43.478 | 29.41 | 7.26 | 0.00 | 3.67 |
1829 | 1843 | 3.489355 | ACATGCATGGAAAGAAGACACA | 58.511 | 40.909 | 29.41 | 0.00 | 0.00 | 3.72 |
1830 | 1844 | 4.084287 | ACATGCATGGAAAGAAGACACAT | 58.916 | 39.130 | 29.41 | 1.17 | 0.00 | 3.21 |
1831 | 1845 | 4.157289 | ACATGCATGGAAAGAAGACACATC | 59.843 | 41.667 | 29.41 | 0.00 | 0.00 | 3.06 |
1832 | 1846 | 4.025040 | TGCATGGAAAGAAGACACATCT | 57.975 | 40.909 | 0.00 | 0.00 | 36.42 | 2.90 |
1833 | 1847 | 4.005650 | TGCATGGAAAGAAGACACATCTC | 58.994 | 43.478 | 0.00 | 0.00 | 32.34 | 2.75 |
1834 | 1848 | 4.005650 | GCATGGAAAGAAGACACATCTCA | 58.994 | 43.478 | 0.00 | 0.00 | 32.34 | 3.27 |
1835 | 1849 | 4.456911 | GCATGGAAAGAAGACACATCTCAA | 59.543 | 41.667 | 0.00 | 0.00 | 32.34 | 3.02 |
1836 | 1850 | 5.618640 | GCATGGAAAGAAGACACATCTCAAC | 60.619 | 44.000 | 0.00 | 0.00 | 32.34 | 3.18 |
1837 | 1851 | 5.034852 | TGGAAAGAAGACACATCTCAACA | 57.965 | 39.130 | 0.00 | 0.00 | 32.34 | 3.33 |
1838 | 1852 | 5.436175 | TGGAAAGAAGACACATCTCAACAA | 58.564 | 37.500 | 0.00 | 0.00 | 32.34 | 2.83 |
1839 | 1853 | 5.528690 | TGGAAAGAAGACACATCTCAACAAG | 59.471 | 40.000 | 0.00 | 0.00 | 32.34 | 3.16 |
1840 | 1854 | 5.429957 | AAAGAAGACACATCTCAACAAGC | 57.570 | 39.130 | 0.00 | 0.00 | 32.34 | 4.01 |
1841 | 1855 | 4.077300 | AGAAGACACATCTCAACAAGCA | 57.923 | 40.909 | 0.00 | 0.00 | 32.34 | 3.91 |
1842 | 1856 | 4.454678 | AGAAGACACATCTCAACAAGCAA | 58.545 | 39.130 | 0.00 | 0.00 | 32.34 | 3.91 |
1843 | 1857 | 4.883585 | AGAAGACACATCTCAACAAGCAAA | 59.116 | 37.500 | 0.00 | 0.00 | 32.34 | 3.68 |
1844 | 1858 | 5.533903 | AGAAGACACATCTCAACAAGCAAAT | 59.466 | 36.000 | 0.00 | 0.00 | 32.34 | 2.32 |
1845 | 1859 | 5.117355 | AGACACATCTCAACAAGCAAATG | 57.883 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
1846 | 1860 | 4.581824 | AGACACATCTCAACAAGCAAATGT | 59.418 | 37.500 | 0.00 | 0.00 | 34.24 | 2.71 |
1847 | 1861 | 5.764686 | AGACACATCTCAACAAGCAAATGTA | 59.235 | 36.000 | 0.00 | 0.00 | 32.02 | 2.29 |
1848 | 1862 | 5.762045 | ACACATCTCAACAAGCAAATGTAC | 58.238 | 37.500 | 0.00 | 0.00 | 32.02 | 2.90 |
1849 | 1863 | 5.299028 | ACACATCTCAACAAGCAAATGTACA | 59.701 | 36.000 | 0.00 | 0.00 | 32.02 | 2.90 |
1850 | 1864 | 6.016024 | ACACATCTCAACAAGCAAATGTACAT | 60.016 | 34.615 | 1.41 | 1.41 | 32.02 | 2.29 |
1851 | 1865 | 6.307077 | CACATCTCAACAAGCAAATGTACATG | 59.693 | 38.462 | 9.63 | 0.00 | 32.02 | 3.21 |
1852 | 1866 | 6.207221 | ACATCTCAACAAGCAAATGTACATGA | 59.793 | 34.615 | 9.63 | 0.00 | 32.02 | 3.07 |
1853 | 1867 | 6.245115 | TCTCAACAAGCAAATGTACATGAG | 57.755 | 37.500 | 9.63 | 9.79 | 37.18 | 2.90 |
1854 | 1868 | 5.997129 | TCTCAACAAGCAAATGTACATGAGA | 59.003 | 36.000 | 9.63 | 11.97 | 40.08 | 3.27 |
1855 | 1869 | 6.486320 | TCTCAACAAGCAAATGTACATGAGAA | 59.514 | 34.615 | 9.63 | 0.00 | 39.73 | 2.87 |
1856 | 1870 | 7.175467 | TCTCAACAAGCAAATGTACATGAGAAT | 59.825 | 33.333 | 9.63 | 0.00 | 39.73 | 2.40 |
1857 | 1871 | 7.660112 | TCAACAAGCAAATGTACATGAGAATT | 58.340 | 30.769 | 9.63 | 0.00 | 32.02 | 2.17 |
1858 | 1872 | 8.791675 | TCAACAAGCAAATGTACATGAGAATTA | 58.208 | 29.630 | 9.63 | 0.00 | 32.02 | 1.40 |
1859 | 1873 | 9.577110 | CAACAAGCAAATGTACATGAGAATTAT | 57.423 | 29.630 | 9.63 | 0.00 | 32.02 | 1.28 |
1860 | 1874 | 9.793252 | AACAAGCAAATGTACATGAGAATTATC | 57.207 | 29.630 | 9.63 | 0.00 | 32.02 | 1.75 |
1861 | 1875 | 8.959548 | ACAAGCAAATGTACATGAGAATTATCA | 58.040 | 29.630 | 9.63 | 5.04 | 0.00 | 2.15 |
1862 | 1876 | 9.961265 | CAAGCAAATGTACATGAGAATTATCAT | 57.039 | 29.630 | 9.63 | 9.77 | 40.59 | 2.45 |
1992 | 2006 | 6.757897 | ACATTCATGTTTCATACAACGGAT | 57.242 | 33.333 | 0.00 | 0.00 | 40.89 | 4.18 |
1993 | 2007 | 6.554419 | ACATTCATGTTTCATACAACGGATG | 58.446 | 36.000 | 0.00 | 0.00 | 40.89 | 3.51 |
1994 | 2008 | 5.559427 | TTCATGTTTCATACAACGGATGG | 57.441 | 39.130 | 0.00 | 0.00 | 40.89 | 3.51 |
1995 | 2009 | 3.376859 | TCATGTTTCATACAACGGATGGC | 59.623 | 43.478 | 0.00 | 0.00 | 40.89 | 4.40 |
1996 | 2010 | 2.784347 | TGTTTCATACAACGGATGGCA | 58.216 | 42.857 | 0.00 | 0.00 | 32.64 | 4.92 |
1997 | 2011 | 3.351740 | TGTTTCATACAACGGATGGCAT | 58.648 | 40.909 | 0.00 | 0.00 | 32.64 | 4.40 |
1998 | 2012 | 3.761218 | TGTTTCATACAACGGATGGCATT | 59.239 | 39.130 | 0.00 | 0.00 | 32.64 | 3.56 |
1999 | 2013 | 4.104776 | GTTTCATACAACGGATGGCATTG | 58.895 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
2000 | 2014 | 3.274095 | TCATACAACGGATGGCATTGA | 57.726 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2001 | 2015 | 3.615155 | TCATACAACGGATGGCATTGAA | 58.385 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2002 | 2016 | 4.013050 | TCATACAACGGATGGCATTGAAA | 58.987 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
2003 | 2017 | 4.644234 | TCATACAACGGATGGCATTGAAAT | 59.356 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2004 | 2018 | 5.825151 | TCATACAACGGATGGCATTGAAATA | 59.175 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2005 | 2019 | 6.489700 | TCATACAACGGATGGCATTGAAATAT | 59.510 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
2006 | 2020 | 4.935702 | ACAACGGATGGCATTGAAATATG | 58.064 | 39.130 | 0.00 | 0.00 | 0.00 | 1.78 |
2007 | 2021 | 4.402155 | ACAACGGATGGCATTGAAATATGT | 59.598 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2008 | 2022 | 5.105392 | ACAACGGATGGCATTGAAATATGTT | 60.105 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2009 | 2023 | 4.935702 | ACGGATGGCATTGAAATATGTTG | 58.064 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
2010 | 2024 | 3.737266 | CGGATGGCATTGAAATATGTTGC | 59.263 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
2011 | 2025 | 4.695396 | GGATGGCATTGAAATATGTTGCA | 58.305 | 39.130 | 0.00 | 0.00 | 35.04 | 4.08 |
2012 | 2026 | 5.117584 | GGATGGCATTGAAATATGTTGCAA | 58.882 | 37.500 | 0.00 | 0.00 | 37.28 | 4.08 |
2013 | 2027 | 5.585445 | GGATGGCATTGAAATATGTTGCAAA | 59.415 | 36.000 | 0.00 | 0.00 | 36.47 | 3.68 |
2014 | 2028 | 6.093771 | GGATGGCATTGAAATATGTTGCAAAA | 59.906 | 34.615 | 0.00 | 0.00 | 36.47 | 2.44 |
2015 | 2029 | 7.201750 | GGATGGCATTGAAATATGTTGCAAAAT | 60.202 | 33.333 | 7.40 | 7.40 | 36.47 | 1.82 |
2016 | 2030 | 8.734218 | ATGGCATTGAAATATGTTGCAAAATA | 57.266 | 26.923 | 11.74 | 11.74 | 36.47 | 1.40 |
2017 | 2031 | 8.734218 | TGGCATTGAAATATGTTGCAAAATAT | 57.266 | 26.923 | 15.24 | 15.24 | 36.47 | 1.28 |
2018 | 2032 | 9.175312 | TGGCATTGAAATATGTTGCAAAATATT | 57.825 | 25.926 | 23.65 | 23.65 | 36.47 | 1.28 |
2019 | 2033 | 9.654417 | GGCATTGAAATATGTTGCAAAATATTC | 57.346 | 29.630 | 27.48 | 21.42 | 36.47 | 1.75 |
2020 | 2034 | 9.654417 | GCATTGAAATATGTTGCAAAATATTCC | 57.346 | 29.630 | 27.48 | 19.68 | 36.47 | 3.01 |
2022 | 2036 | 8.417780 | TTGAAATATGTTGCAAAATATTCCCG | 57.582 | 30.769 | 27.48 | 0.00 | 29.75 | 5.14 |
2023 | 2037 | 6.478344 | TGAAATATGTTGCAAAATATTCCCGC | 59.522 | 34.615 | 27.48 | 19.15 | 30.44 | 6.13 |
2024 | 2038 | 3.883830 | ATGTTGCAAAATATTCCCGCA | 57.116 | 38.095 | 0.00 | 3.09 | 0.00 | 5.69 |
2025 | 2039 | 3.667497 | TGTTGCAAAATATTCCCGCAA | 57.333 | 38.095 | 0.00 | 12.54 | 40.08 | 4.85 |
2027 | 2041 | 3.667497 | TTGCAAAATATTCCCGCAACA | 57.333 | 38.095 | 12.54 | 0.00 | 37.64 | 3.33 |
2028 | 2042 | 3.667497 | TGCAAAATATTCCCGCAACAA | 57.333 | 38.095 | 4.44 | 0.00 | 0.00 | 2.83 |
2029 | 2043 | 3.321497 | TGCAAAATATTCCCGCAACAAC | 58.679 | 40.909 | 4.44 | 0.00 | 0.00 | 3.32 |
2030 | 2044 | 2.344142 | GCAAAATATTCCCGCAACAACG | 59.656 | 45.455 | 0.00 | 0.00 | 0.00 | 4.10 |
2031 | 2045 | 3.570559 | CAAAATATTCCCGCAACAACGT | 58.429 | 40.909 | 0.00 | 0.00 | 0.00 | 3.99 |
2032 | 2046 | 4.724303 | CAAAATATTCCCGCAACAACGTA | 58.276 | 39.130 | 0.00 | 0.00 | 0.00 | 3.57 |
2033 | 2047 | 5.154932 | CAAAATATTCCCGCAACAACGTAA | 58.845 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2035 | 2049 | 1.161843 | ATTCCCGCAACAACGTAAGG | 58.838 | 50.000 | 0.00 | 0.00 | 46.39 | 2.69 |
2036 | 2050 | 0.885596 | TTCCCGCAACAACGTAAGGG | 60.886 | 55.000 | 0.00 | 0.00 | 46.39 | 3.95 |
2037 | 2051 | 2.329614 | CCCGCAACAACGTAAGGGG | 61.330 | 63.158 | 0.00 | 0.00 | 46.39 | 4.79 |
2038 | 2052 | 2.559330 | CGCAACAACGTAAGGGGC | 59.441 | 61.111 | 0.00 | 0.00 | 46.39 | 5.80 |
2039 | 2053 | 2.255172 | CGCAACAACGTAAGGGGCA | 61.255 | 57.895 | 0.00 | 0.00 | 46.39 | 5.36 |
2040 | 2054 | 1.582610 | CGCAACAACGTAAGGGGCAT | 61.583 | 55.000 | 0.00 | 0.00 | 46.39 | 4.40 |
2041 | 2055 | 1.455248 | GCAACAACGTAAGGGGCATA | 58.545 | 50.000 | 0.00 | 0.00 | 46.39 | 3.14 |
2042 | 2056 | 1.813786 | GCAACAACGTAAGGGGCATAA | 59.186 | 47.619 | 0.00 | 0.00 | 46.39 | 1.90 |
2043 | 2057 | 2.414957 | GCAACAACGTAAGGGGCATAAC | 60.415 | 50.000 | 0.00 | 0.00 | 46.39 | 1.89 |
2044 | 2058 | 2.118313 | ACAACGTAAGGGGCATAACC | 57.882 | 50.000 | 0.00 | 0.00 | 46.39 | 2.85 |
2045 | 2059 | 1.631898 | ACAACGTAAGGGGCATAACCT | 59.368 | 47.619 | 0.00 | 0.00 | 46.39 | 3.50 |
2046 | 2060 | 2.839425 | ACAACGTAAGGGGCATAACCTA | 59.161 | 45.455 | 0.00 | 0.00 | 46.39 | 3.08 |
2047 | 2061 | 3.118519 | ACAACGTAAGGGGCATAACCTAG | 60.119 | 47.826 | 0.00 | 0.00 | 46.39 | 3.02 |
2048 | 2062 | 2.755686 | ACGTAAGGGGCATAACCTAGT | 58.244 | 47.619 | 0.00 | 0.00 | 46.39 | 2.57 |
2049 | 2063 | 3.914771 | ACGTAAGGGGCATAACCTAGTA | 58.085 | 45.455 | 0.00 | 0.00 | 46.39 | 1.82 |
2050 | 2064 | 4.486839 | ACGTAAGGGGCATAACCTAGTAT | 58.513 | 43.478 | 0.00 | 0.00 | 46.39 | 2.12 |
2051 | 2065 | 5.644188 | ACGTAAGGGGCATAACCTAGTATA | 58.356 | 41.667 | 0.00 | 0.00 | 46.39 | 1.47 |
2052 | 2066 | 6.259123 | ACGTAAGGGGCATAACCTAGTATAT | 58.741 | 40.000 | 0.00 | 0.00 | 46.39 | 0.86 |
2053 | 2067 | 7.413446 | ACGTAAGGGGCATAACCTAGTATATA | 58.587 | 38.462 | 0.00 | 0.00 | 46.39 | 0.86 |
2054 | 2068 | 8.063770 | ACGTAAGGGGCATAACCTAGTATATAT | 58.936 | 37.037 | 0.00 | 0.00 | 46.39 | 0.86 |
2055 | 2069 | 9.578576 | CGTAAGGGGCATAACCTAGTATATATA | 57.421 | 37.037 | 0.00 | 0.00 | 37.35 | 0.86 |
2057 | 2071 | 8.794364 | AAGGGGCATAACCTAGTATATATACC | 57.206 | 38.462 | 17.52 | 2.50 | 37.35 | 2.73 |
2058 | 2072 | 8.139519 | AGGGGCATAACCTAGTATATATACCT | 57.860 | 38.462 | 17.52 | 8.99 | 36.32 | 3.08 |
2059 | 2073 | 9.258424 | AGGGGCATAACCTAGTATATATACCTA | 57.742 | 37.037 | 17.52 | 9.54 | 36.32 | 3.08 |
2060 | 2074 | 9.887862 | GGGGCATAACCTAGTATATATACCTAA | 57.112 | 37.037 | 17.52 | 5.00 | 39.10 | 2.69 |
2081 | 2095 | 8.621073 | ACCTAAGTAATTTATCCCCATTATCCC | 58.379 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
2082 | 2096 | 8.620177 | CCTAAGTAATTTATCCCCATTATCCCA | 58.380 | 37.037 | 0.00 | 0.00 | 0.00 | 4.37 |
2085 | 2099 | 9.912461 | AAGTAATTTATCCCCATTATCCCAATT | 57.088 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
2086 | 2100 | 9.547279 | AGTAATTTATCCCCATTATCCCAATTC | 57.453 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2087 | 2101 | 9.547279 | GTAATTTATCCCCATTATCCCAATTCT | 57.453 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2088 | 2102 | 8.670521 | AATTTATCCCCATTATCCCAATTCTC | 57.329 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
2089 | 2103 | 7.420624 | TTTATCCCCATTATCCCAATTCTCT | 57.579 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2090 | 2104 | 5.527026 | ATCCCCATTATCCCAATTCTCTC | 57.473 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
2091 | 2105 | 4.315115 | TCCCCATTATCCCAATTCTCTCA | 58.685 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2092 | 2106 | 4.731416 | TCCCCATTATCCCAATTCTCTCAA | 59.269 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2093 | 2107 | 4.829492 | CCCCATTATCCCAATTCTCTCAAC | 59.171 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2094 | 2108 | 5.448654 | CCCATTATCCCAATTCTCTCAACA | 58.551 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2095 | 2109 | 6.073314 | CCCATTATCCCAATTCTCTCAACAT | 58.927 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2096 | 2110 | 6.015688 | CCCATTATCCCAATTCTCTCAACATG | 60.016 | 42.308 | 0.00 | 0.00 | 0.00 | 3.21 |
2097 | 2111 | 6.444633 | CATTATCCCAATTCTCTCAACATGC | 58.555 | 40.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2098 | 2112 | 3.438216 | TCCCAATTCTCTCAACATGCA | 57.562 | 42.857 | 0.00 | 0.00 | 0.00 | 3.96 |
2099 | 2113 | 3.084039 | TCCCAATTCTCTCAACATGCAC | 58.916 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
2100 | 2114 | 2.821378 | CCCAATTCTCTCAACATGCACA | 59.179 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
2101 | 2115 | 3.366679 | CCCAATTCTCTCAACATGCACAC | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
2102 | 2116 | 3.253921 | CCAATTCTCTCAACATGCACACA | 59.746 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
2103 | 2117 | 4.082408 | CCAATTCTCTCAACATGCACACAT | 60.082 | 41.667 | 0.00 | 0.00 | 36.79 | 3.21 |
2114 | 2128 | 3.635433 | GCACACATGCCACATCATC | 57.365 | 52.632 | 0.00 | 0.00 | 46.97 | 2.92 |
2115 | 2129 | 0.812549 | GCACACATGCCACATCATCA | 59.187 | 50.000 | 0.00 | 0.00 | 46.97 | 3.07 |
2116 | 2130 | 1.407618 | GCACACATGCCACATCATCAT | 59.592 | 47.619 | 0.00 | 0.00 | 46.97 | 2.45 |
2117 | 2131 | 2.159156 | GCACACATGCCACATCATCATT | 60.159 | 45.455 | 0.00 | 0.00 | 46.97 | 2.57 |
2118 | 2132 | 3.702330 | CACACATGCCACATCATCATTC | 58.298 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
2119 | 2133 | 3.380320 | CACACATGCCACATCATCATTCT | 59.620 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2120 | 2134 | 3.630769 | ACACATGCCACATCATCATTCTC | 59.369 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
2121 | 2135 | 3.883489 | CACATGCCACATCATCATTCTCT | 59.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.10 |
2122 | 2136 | 4.023963 | CACATGCCACATCATCATTCTCTC | 60.024 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
2123 | 2137 | 4.141459 | ACATGCCACATCATCATTCTCTCT | 60.141 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
2124 | 2138 | 4.069300 | TGCCACATCATCATTCTCTCTC | 57.931 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
2125 | 2139 | 3.453353 | TGCCACATCATCATTCTCTCTCA | 59.547 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2126 | 2140 | 4.080751 | TGCCACATCATCATTCTCTCTCAA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2127 | 2141 | 4.272991 | GCCACATCATCATTCTCTCTCAAC | 59.727 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2128 | 2142 | 5.425630 | CCACATCATCATTCTCTCTCAACA | 58.574 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2129 | 2143 | 6.056236 | CCACATCATCATTCTCTCTCAACAT | 58.944 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2130 | 2144 | 6.017852 | CCACATCATCATTCTCTCTCAACATG | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 3.21 |
2131 | 2145 | 5.527951 | ACATCATCATTCTCTCTCAACATGC | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2132 | 2146 | 5.093849 | TCATCATTCTCTCTCAACATGCA | 57.906 | 39.130 | 0.00 | 0.00 | 0.00 | 3.96 |
2133 | 2147 | 5.681639 | TCATCATTCTCTCTCAACATGCAT | 58.318 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
2134 | 2148 | 6.823497 | TCATCATTCTCTCTCAACATGCATA | 58.177 | 36.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2135 | 2149 | 6.929606 | TCATCATTCTCTCTCAACATGCATAG | 59.070 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
2136 | 2150 | 6.475596 | TCATTCTCTCTCAACATGCATAGA | 57.524 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
2137 | 2151 | 7.063934 | TCATTCTCTCTCAACATGCATAGAT | 57.936 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2138 | 2152 | 7.153315 | TCATTCTCTCTCAACATGCATAGATC | 58.847 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
2139 | 2153 | 6.728089 | TTCTCTCTCAACATGCATAGATCT | 57.272 | 37.500 | 0.00 | 0.00 | 0.00 | 2.75 |
2140 | 2154 | 6.086785 | TCTCTCTCAACATGCATAGATCTG | 57.913 | 41.667 | 5.18 | 0.00 | 0.00 | 2.90 |
2141 | 2155 | 5.832060 | TCTCTCTCAACATGCATAGATCTGA | 59.168 | 40.000 | 5.18 | 0.00 | 0.00 | 3.27 |
2142 | 2156 | 6.323225 | TCTCTCTCAACATGCATAGATCTGAA | 59.677 | 38.462 | 5.18 | 0.00 | 0.00 | 3.02 |
2143 | 2157 | 7.015389 | TCTCTCTCAACATGCATAGATCTGAAT | 59.985 | 37.037 | 5.18 | 0.00 | 0.00 | 2.57 |
2144 | 2158 | 7.506971 | TCTCTCAACATGCATAGATCTGAATT | 58.493 | 34.615 | 5.18 | 0.00 | 0.00 | 2.17 |
2145 | 2159 | 7.656542 | TCTCTCAACATGCATAGATCTGAATTC | 59.343 | 37.037 | 5.18 | 0.00 | 0.00 | 2.17 |
2146 | 2160 | 7.506971 | TCTCAACATGCATAGATCTGAATTCT | 58.493 | 34.615 | 5.18 | 0.00 | 0.00 | 2.40 |
2147 | 2161 | 7.656542 | TCTCAACATGCATAGATCTGAATTCTC | 59.343 | 37.037 | 5.18 | 0.00 | 0.00 | 2.87 |
2148 | 2162 | 6.709397 | TCAACATGCATAGATCTGAATTCTCC | 59.291 | 38.462 | 5.18 | 0.00 | 0.00 | 3.71 |
2149 | 2163 | 6.183810 | ACATGCATAGATCTGAATTCTCCA | 57.816 | 37.500 | 5.18 | 0.00 | 0.00 | 3.86 |
2150 | 2164 | 5.996513 | ACATGCATAGATCTGAATTCTCCAC | 59.003 | 40.000 | 5.18 | 0.00 | 0.00 | 4.02 |
2151 | 2165 | 5.619132 | TGCATAGATCTGAATTCTCCACA | 57.381 | 39.130 | 5.18 | 0.00 | 0.00 | 4.17 |
2152 | 2166 | 5.363101 | TGCATAGATCTGAATTCTCCACAC | 58.637 | 41.667 | 5.18 | 0.00 | 0.00 | 3.82 |
2153 | 2167 | 5.104817 | TGCATAGATCTGAATTCTCCACACA | 60.105 | 40.000 | 5.18 | 0.00 | 0.00 | 3.72 |
2154 | 2168 | 5.996513 | GCATAGATCTGAATTCTCCACACAT | 59.003 | 40.000 | 5.18 | 0.00 | 0.00 | 3.21 |
2155 | 2169 | 6.073167 | GCATAGATCTGAATTCTCCACACATG | 60.073 | 42.308 | 5.18 | 0.00 | 0.00 | 3.21 |
2156 | 2170 | 4.197750 | AGATCTGAATTCTCCACACATGC | 58.802 | 43.478 | 7.05 | 0.00 | 0.00 | 4.06 |
2157 | 2171 | 2.715046 | TCTGAATTCTCCACACATGCC | 58.285 | 47.619 | 7.05 | 0.00 | 0.00 | 4.40 |
2158 | 2172 | 2.040145 | TCTGAATTCTCCACACATGCCA | 59.960 | 45.455 | 7.05 | 0.00 | 0.00 | 4.92 |
2159 | 2173 | 2.161855 | TGAATTCTCCACACATGCCAC | 58.838 | 47.619 | 7.05 | 0.00 | 0.00 | 5.01 |
2160 | 2174 | 1.474077 | GAATTCTCCACACATGCCACC | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
2161 | 2175 | 0.700564 | ATTCTCCACACATGCCACCT | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2162 | 2176 | 0.036732 | TTCTCCACACATGCCACCTC | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2163 | 2177 | 1.126948 | TCTCCACACATGCCACCTCA | 61.127 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2164 | 2178 | 0.034767 | CTCCACACATGCCACCTCAT | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2165 | 2179 | 0.035152 | TCCACACATGCCACCTCATC | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2166 | 2180 | 0.322726 | CCACACATGCCACCTCATCA | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2167 | 2181 | 1.536940 | CACACATGCCACCTCATCAA | 58.463 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2168 | 2182 | 1.887854 | CACACATGCCACCTCATCAAA | 59.112 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
2169 | 2183 | 2.296752 | CACACATGCCACCTCATCAAAA | 59.703 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
2170 | 2184 | 2.964464 | ACACATGCCACCTCATCAAAAA | 59.036 | 40.909 | 0.00 | 0.00 | 0.00 | 1.94 |
2171 | 2185 | 3.243839 | ACACATGCCACCTCATCAAAAAC | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
2172 | 2186 | 2.964464 | ACATGCCACCTCATCAAAAACA | 59.036 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
2173 | 2187 | 3.243839 | ACATGCCACCTCATCAAAAACAC | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
2174 | 2188 | 2.665165 | TGCCACCTCATCAAAAACACT | 58.335 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
2175 | 2189 | 3.826524 | TGCCACCTCATCAAAAACACTA | 58.173 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
2176 | 2190 | 4.211125 | TGCCACCTCATCAAAAACACTAA | 58.789 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2177 | 2191 | 4.832266 | TGCCACCTCATCAAAAACACTAAT | 59.168 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
2178 | 2192 | 5.304101 | TGCCACCTCATCAAAAACACTAATT | 59.696 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2179 | 2193 | 6.183360 | TGCCACCTCATCAAAAACACTAATTT | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2180 | 2194 | 6.705825 | GCCACCTCATCAAAAACACTAATTTT | 59.294 | 34.615 | 0.00 | 0.00 | 33.13 | 1.82 |
2181 | 2195 | 7.226523 | GCCACCTCATCAAAAACACTAATTTTT | 59.773 | 33.333 | 0.00 | 0.00 | 41.38 | 1.94 |
2200 | 2214 | 2.791383 | TTTCTTTCAACACGCATGGG | 57.209 | 45.000 | 8.44 | 8.44 | 0.00 | 4.00 |
2201 | 2215 | 1.974265 | TTCTTTCAACACGCATGGGA | 58.026 | 45.000 | 17.76 | 0.00 | 0.00 | 4.37 |
2202 | 2216 | 1.974265 | TCTTTCAACACGCATGGGAA | 58.026 | 45.000 | 17.76 | 0.00 | 0.00 | 3.97 |
2203 | 2217 | 2.302260 | TCTTTCAACACGCATGGGAAA | 58.698 | 42.857 | 17.76 | 5.17 | 34.24 | 3.13 |
2204 | 2218 | 2.890311 | TCTTTCAACACGCATGGGAAAT | 59.110 | 40.909 | 17.76 | 0.00 | 34.63 | 2.17 |
2205 | 2219 | 4.075682 | TCTTTCAACACGCATGGGAAATA | 58.924 | 39.130 | 17.76 | 0.00 | 34.63 | 1.40 |
2206 | 2220 | 3.840890 | TTCAACACGCATGGGAAATAC | 57.159 | 42.857 | 17.76 | 0.00 | 0.00 | 1.89 |
2207 | 2221 | 3.066291 | TCAACACGCATGGGAAATACT | 57.934 | 42.857 | 17.76 | 0.00 | 0.00 | 2.12 |
2208 | 2222 | 4.209307 | TCAACACGCATGGGAAATACTA | 57.791 | 40.909 | 17.76 | 0.00 | 0.00 | 1.82 |
2209 | 2223 | 3.936453 | TCAACACGCATGGGAAATACTAC | 59.064 | 43.478 | 17.76 | 0.00 | 0.00 | 2.73 |
2210 | 2224 | 3.906720 | ACACGCATGGGAAATACTACT | 57.093 | 42.857 | 17.76 | 0.00 | 0.00 | 2.57 |
2211 | 2225 | 4.216411 | ACACGCATGGGAAATACTACTT | 57.784 | 40.909 | 17.76 | 0.00 | 0.00 | 2.24 |
2212 | 2226 | 5.347620 | ACACGCATGGGAAATACTACTTA | 57.652 | 39.130 | 17.76 | 0.00 | 0.00 | 2.24 |
2213 | 2227 | 5.925509 | ACACGCATGGGAAATACTACTTAT | 58.074 | 37.500 | 17.76 | 0.00 | 0.00 | 1.73 |
2214 | 2228 | 7.058023 | ACACGCATGGGAAATACTACTTATA | 57.942 | 36.000 | 17.76 | 0.00 | 0.00 | 0.98 |
2215 | 2229 | 7.676947 | ACACGCATGGGAAATACTACTTATAT | 58.323 | 34.615 | 17.76 | 0.00 | 0.00 | 0.86 |
2216 | 2230 | 8.154856 | ACACGCATGGGAAATACTACTTATATT | 58.845 | 33.333 | 17.76 | 0.00 | 0.00 | 1.28 |
2217 | 2231 | 8.656849 | CACGCATGGGAAATACTACTTATATTC | 58.343 | 37.037 | 17.76 | 0.00 | 0.00 | 1.75 |
2218 | 2232 | 8.594550 | ACGCATGGGAAATACTACTTATATTCT | 58.405 | 33.333 | 17.76 | 0.00 | 0.00 | 2.40 |
2219 | 2233 | 8.873830 | CGCATGGGAAATACTACTTATATTCTG | 58.126 | 37.037 | 3.11 | 0.00 | 0.00 | 3.02 |
2220 | 2234 | 8.669243 | GCATGGGAAATACTACTTATATTCTGC | 58.331 | 37.037 | 0.00 | 0.00 | 0.00 | 4.26 |
2221 | 2235 | 9.725019 | CATGGGAAATACTACTTATATTCTGCA | 57.275 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
278 | 285 | 3.505449 | CGCTAAATCACGCTATTGTCC | 57.495 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
316 | 324 | 6.156256 | TGACATAGCTTTAGTGTGACCCTAAT | 59.844 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
438 | 449 | 4.082408 | AGTTAAGCCCCATTTAGCGTTTTC | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
452 | 463 | 8.024865 | ACGAAAACATATACAAAAGTTAAGCCC | 58.975 | 33.333 | 0.00 | 0.00 | 0.00 | 5.19 |
487 | 498 | 2.092429 | TCCCATTTACTGGTGGCTCATC | 60.092 | 50.000 | 0.00 | 0.00 | 44.30 | 2.92 |
924 | 936 | 9.809096 | CACTCACAATGACTCTTTATACATACT | 57.191 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
1005 | 1017 | 1.003812 | CCGGAACCATTGTTACCTCCA | 59.996 | 52.381 | 0.00 | 0.00 | 33.97 | 3.86 |
1025 | 1037 | 2.359975 | CCGGCCACTCCACCTTTC | 60.360 | 66.667 | 2.24 | 0.00 | 34.01 | 2.62 |
1268 | 1280 | 4.576216 | ATTATTCAGCTGTCGATCGACT | 57.424 | 40.909 | 39.10 | 24.38 | 44.80 | 4.18 |
1306 | 1318 | 2.288825 | ACGTATCCAATACATGAGGGCG | 60.289 | 50.000 | 0.00 | 4.89 | 35.48 | 6.13 |
1345 | 1357 | 0.596082 | TAAGCAAAAACCGAGCCAGC | 59.404 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1358 | 1370 | 9.241919 | TCACCTTCTATTGATTGAAATAAGCAA | 57.758 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
1460 | 1472 | 8.823794 | GTTACTGGGGGTTAGCTATTTAGATAT | 58.176 | 37.037 | 0.00 | 0.00 | 0.00 | 1.63 |
1471 | 1483 | 5.130643 | AGAGAAATAGTTACTGGGGGTTAGC | 59.869 | 44.000 | 0.00 | 0.00 | 0.00 | 3.09 |
1477 | 1489 | 6.049955 | TGTTGAGAGAAATAGTTACTGGGG | 57.950 | 41.667 | 0.00 | 0.00 | 0.00 | 4.96 |
1482 | 1494 | 6.963805 | GCTTGCATGTTGAGAGAAATAGTTAC | 59.036 | 38.462 | 1.14 | 0.00 | 0.00 | 2.50 |
1492 | 1504 | 2.486592 | TGTCATGCTTGCATGTTGAGAG | 59.513 | 45.455 | 27.80 | 7.73 | 34.39 | 3.20 |
1511 | 1523 | 2.885894 | TGCATGTTGTGTGATGATGTGT | 59.114 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
1514 | 1526 | 4.095782 | TCTCATGCATGTTGTGTGATGATG | 59.904 | 41.667 | 25.43 | 0.00 | 32.15 | 3.07 |
1525 | 1537 | 1.551883 | GGGCCTTTTCTCATGCATGTT | 59.448 | 47.619 | 25.43 | 0.00 | 0.00 | 2.71 |
1541 | 1553 | 1.145571 | TATGATAGTTGGGGTGGGCC | 58.854 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
1569 | 1582 | 4.576053 | TGAAGTGGTATATGCTTGCATGTC | 59.424 | 41.667 | 17.26 | 7.82 | 0.00 | 3.06 |
1582 | 1595 | 6.999871 | TCATGCATGTCATAATGAAGTGGTAT | 59.000 | 34.615 | 25.43 | 0.00 | 33.19 | 2.73 |
1583 | 1596 | 6.355747 | TCATGCATGTCATAATGAAGTGGTA | 58.644 | 36.000 | 25.43 | 0.00 | 33.19 | 3.25 |
1692 | 1706 | 8.479313 | TTGCATGTTGAGAGTAATAGTTAGTG | 57.521 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1701 | 1715 | 5.244755 | TGTATGCTTGCATGTTGAGAGTAA | 58.755 | 37.500 | 17.26 | 0.00 | 0.00 | 2.24 |
1736 | 1750 | 2.613691 | GGCCTTTTCTCATGCATGTTG | 58.386 | 47.619 | 25.43 | 18.71 | 0.00 | 3.33 |
1754 | 1768 | 2.639839 | ACATATGATAGTGAGGGTGGGC | 59.360 | 50.000 | 10.38 | 0.00 | 0.00 | 5.36 |
1757 | 1771 | 5.772169 | TGAGAGACATATGATAGTGAGGGTG | 59.228 | 44.000 | 10.38 | 0.00 | 0.00 | 4.61 |
1758 | 1772 | 5.958321 | TGAGAGACATATGATAGTGAGGGT | 58.042 | 41.667 | 10.38 | 0.00 | 0.00 | 4.34 |
1763 | 1777 | 6.927381 | TGCATGTTGAGAGACATATGATAGTG | 59.073 | 38.462 | 10.38 | 0.00 | 38.15 | 2.74 |
1805 | 1819 | 4.157289 | GTGTCTTCTTTCCATGCATGTCAT | 59.843 | 41.667 | 24.58 | 0.00 | 35.31 | 3.06 |
1806 | 1820 | 3.503363 | GTGTCTTCTTTCCATGCATGTCA | 59.497 | 43.478 | 24.58 | 8.66 | 0.00 | 3.58 |
1807 | 1821 | 3.503363 | TGTGTCTTCTTTCCATGCATGTC | 59.497 | 43.478 | 24.58 | 4.95 | 0.00 | 3.06 |
1808 | 1822 | 3.489355 | TGTGTCTTCTTTCCATGCATGT | 58.511 | 40.909 | 24.58 | 0.00 | 0.00 | 3.21 |
1809 | 1823 | 4.398358 | AGATGTGTCTTCTTTCCATGCATG | 59.602 | 41.667 | 20.19 | 20.19 | 0.00 | 4.06 |
1810 | 1824 | 4.597004 | AGATGTGTCTTCTTTCCATGCAT | 58.403 | 39.130 | 0.00 | 0.00 | 0.00 | 3.96 |
1811 | 1825 | 4.005650 | GAGATGTGTCTTCTTTCCATGCA | 58.994 | 43.478 | 0.00 | 0.00 | 33.97 | 3.96 |
1812 | 1826 | 4.005650 | TGAGATGTGTCTTCTTTCCATGC | 58.994 | 43.478 | 0.00 | 0.00 | 33.97 | 4.06 |
1813 | 1827 | 5.471116 | TGTTGAGATGTGTCTTCTTTCCATG | 59.529 | 40.000 | 0.00 | 0.00 | 33.97 | 3.66 |
1814 | 1828 | 5.624159 | TGTTGAGATGTGTCTTCTTTCCAT | 58.376 | 37.500 | 0.00 | 0.00 | 33.97 | 3.41 |
1815 | 1829 | 5.034852 | TGTTGAGATGTGTCTTCTTTCCA | 57.965 | 39.130 | 0.00 | 0.00 | 33.97 | 3.53 |
1816 | 1830 | 5.561725 | GCTTGTTGAGATGTGTCTTCTTTCC | 60.562 | 44.000 | 0.00 | 0.00 | 33.97 | 3.13 |
1817 | 1831 | 5.008019 | TGCTTGTTGAGATGTGTCTTCTTTC | 59.992 | 40.000 | 0.00 | 0.00 | 33.97 | 2.62 |
1818 | 1832 | 4.883585 | TGCTTGTTGAGATGTGTCTTCTTT | 59.116 | 37.500 | 0.00 | 0.00 | 33.97 | 2.52 |
1819 | 1833 | 4.454678 | TGCTTGTTGAGATGTGTCTTCTT | 58.545 | 39.130 | 0.00 | 0.00 | 33.97 | 2.52 |
1820 | 1834 | 4.077300 | TGCTTGTTGAGATGTGTCTTCT | 57.923 | 40.909 | 0.00 | 0.00 | 33.97 | 2.85 |
1821 | 1835 | 4.818534 | TTGCTTGTTGAGATGTGTCTTC | 57.181 | 40.909 | 0.00 | 0.00 | 33.97 | 2.87 |
1822 | 1836 | 5.068198 | ACATTTGCTTGTTGAGATGTGTCTT | 59.932 | 36.000 | 0.00 | 0.00 | 33.97 | 3.01 |
1823 | 1837 | 4.581824 | ACATTTGCTTGTTGAGATGTGTCT | 59.418 | 37.500 | 0.00 | 0.00 | 37.42 | 3.41 |
1824 | 1838 | 4.863491 | ACATTTGCTTGTTGAGATGTGTC | 58.137 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
1825 | 1839 | 4.924305 | ACATTTGCTTGTTGAGATGTGT | 57.076 | 36.364 | 0.00 | 0.00 | 0.00 | 3.72 |
1826 | 1840 | 5.761003 | TGTACATTTGCTTGTTGAGATGTG | 58.239 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
1827 | 1841 | 6.207221 | TCATGTACATTTGCTTGTTGAGATGT | 59.793 | 34.615 | 5.37 | 0.00 | 0.00 | 3.06 |
1828 | 1842 | 6.614160 | TCATGTACATTTGCTTGTTGAGATG | 58.386 | 36.000 | 5.37 | 0.00 | 0.00 | 2.90 |
1829 | 1843 | 6.656270 | TCTCATGTACATTTGCTTGTTGAGAT | 59.344 | 34.615 | 5.37 | 0.00 | 36.66 | 2.75 |
1830 | 1844 | 5.997129 | TCTCATGTACATTTGCTTGTTGAGA | 59.003 | 36.000 | 5.37 | 10.45 | 38.08 | 3.27 |
1831 | 1845 | 6.245115 | TCTCATGTACATTTGCTTGTTGAG | 57.755 | 37.500 | 5.37 | 8.20 | 35.07 | 3.02 |
1832 | 1846 | 6.631971 | TTCTCATGTACATTTGCTTGTTGA | 57.368 | 33.333 | 5.37 | 0.00 | 0.00 | 3.18 |
1833 | 1847 | 7.878477 | AATTCTCATGTACATTTGCTTGTTG | 57.122 | 32.000 | 5.37 | 0.00 | 0.00 | 3.33 |
1834 | 1848 | 9.793252 | GATAATTCTCATGTACATTTGCTTGTT | 57.207 | 29.630 | 5.37 | 0.00 | 0.00 | 2.83 |
1835 | 1849 | 8.959548 | TGATAATTCTCATGTACATTTGCTTGT | 58.040 | 29.630 | 5.37 | 0.00 | 0.00 | 3.16 |
1836 | 1850 | 9.961265 | ATGATAATTCTCATGTACATTTGCTTG | 57.039 | 29.630 | 5.37 | 0.00 | 34.59 | 4.01 |
1969 | 1983 | 6.404623 | CCATCCGTTGTATGAAACATGAATGT | 60.405 | 38.462 | 0.00 | 0.00 | 44.20 | 2.71 |
1970 | 1984 | 5.972973 | CCATCCGTTGTATGAAACATGAATG | 59.027 | 40.000 | 0.00 | 0.00 | 38.10 | 2.67 |
1971 | 1985 | 5.450412 | GCCATCCGTTGTATGAAACATGAAT | 60.450 | 40.000 | 0.00 | 0.00 | 38.10 | 2.57 |
1972 | 1986 | 4.142491 | GCCATCCGTTGTATGAAACATGAA | 60.142 | 41.667 | 0.00 | 0.00 | 38.10 | 2.57 |
1973 | 1987 | 3.376859 | GCCATCCGTTGTATGAAACATGA | 59.623 | 43.478 | 0.00 | 0.00 | 38.10 | 3.07 |
1974 | 1988 | 3.128415 | TGCCATCCGTTGTATGAAACATG | 59.872 | 43.478 | 0.00 | 0.00 | 38.10 | 3.21 |
1975 | 1989 | 3.351740 | TGCCATCCGTTGTATGAAACAT | 58.648 | 40.909 | 0.00 | 0.00 | 38.10 | 2.71 |
1976 | 1990 | 2.784347 | TGCCATCCGTTGTATGAAACA | 58.216 | 42.857 | 0.00 | 0.00 | 35.88 | 2.83 |
1977 | 1991 | 4.104776 | CAATGCCATCCGTTGTATGAAAC | 58.895 | 43.478 | 0.00 | 0.00 | 36.03 | 2.78 |
1978 | 1992 | 4.013050 | TCAATGCCATCCGTTGTATGAAA | 58.987 | 39.130 | 0.00 | 0.00 | 40.56 | 2.69 |
1979 | 1993 | 3.615155 | TCAATGCCATCCGTTGTATGAA | 58.385 | 40.909 | 0.00 | 0.00 | 40.56 | 2.57 |
1980 | 1994 | 3.274095 | TCAATGCCATCCGTTGTATGA | 57.726 | 42.857 | 0.00 | 0.00 | 40.56 | 2.15 |
1981 | 1995 | 4.368874 | TTTCAATGCCATCCGTTGTATG | 57.631 | 40.909 | 0.00 | 0.00 | 40.56 | 2.39 |
1982 | 1996 | 6.265196 | ACATATTTCAATGCCATCCGTTGTAT | 59.735 | 34.615 | 0.00 | 0.00 | 40.56 | 2.29 |
1983 | 1997 | 5.592282 | ACATATTTCAATGCCATCCGTTGTA | 59.408 | 36.000 | 0.00 | 0.00 | 40.56 | 2.41 |
1984 | 1998 | 4.402155 | ACATATTTCAATGCCATCCGTTGT | 59.598 | 37.500 | 0.00 | 0.00 | 40.56 | 3.32 |
1985 | 1999 | 4.935702 | ACATATTTCAATGCCATCCGTTG | 58.064 | 39.130 | 0.00 | 0.00 | 40.97 | 4.10 |
1986 | 2000 | 5.350633 | CAACATATTTCAATGCCATCCGTT | 58.649 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
1987 | 2001 | 4.737352 | GCAACATATTTCAATGCCATCCGT | 60.737 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
1988 | 2002 | 3.737266 | GCAACATATTTCAATGCCATCCG | 59.263 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
1989 | 2003 | 4.695396 | TGCAACATATTTCAATGCCATCC | 58.305 | 39.130 | 0.00 | 0.00 | 36.20 | 3.51 |
1990 | 2004 | 6.665474 | TTTGCAACATATTTCAATGCCATC | 57.335 | 33.333 | 0.00 | 0.00 | 36.20 | 3.51 |
1991 | 2005 | 7.633193 | ATTTTGCAACATATTTCAATGCCAT | 57.367 | 28.000 | 0.00 | 0.00 | 36.20 | 4.40 |
1992 | 2006 | 8.734218 | ATATTTTGCAACATATTTCAATGCCA | 57.266 | 26.923 | 11.50 | 0.00 | 36.20 | 4.92 |
1993 | 2007 | 9.654417 | GAATATTTTGCAACATATTTCAATGCC | 57.346 | 29.630 | 24.51 | 11.53 | 36.20 | 4.40 |
1994 | 2008 | 9.654417 | GGAATATTTTGCAACATATTTCAATGC | 57.346 | 29.630 | 24.51 | 14.32 | 37.52 | 3.56 |
1996 | 2010 | 9.044150 | CGGGAATATTTTGCAACATATTTCAAT | 57.956 | 29.630 | 26.76 | 13.75 | 0.00 | 2.57 |
1997 | 2011 | 7.010923 | GCGGGAATATTTTGCAACATATTTCAA | 59.989 | 33.333 | 26.76 | 8.27 | 0.00 | 2.69 |
1998 | 2012 | 6.478344 | GCGGGAATATTTTGCAACATATTTCA | 59.522 | 34.615 | 26.76 | 3.82 | 0.00 | 2.69 |
1999 | 2013 | 6.478344 | TGCGGGAATATTTTGCAACATATTTC | 59.522 | 34.615 | 24.51 | 22.86 | 31.69 | 2.17 |
2000 | 2014 | 6.344500 | TGCGGGAATATTTTGCAACATATTT | 58.656 | 32.000 | 24.51 | 13.16 | 31.69 | 1.40 |
2001 | 2015 | 5.911752 | TGCGGGAATATTTTGCAACATATT | 58.088 | 33.333 | 24.14 | 24.14 | 31.69 | 1.28 |
2002 | 2016 | 5.528043 | TGCGGGAATATTTTGCAACATAT | 57.472 | 34.783 | 11.50 | 11.50 | 31.69 | 1.78 |
2003 | 2017 | 4.991153 | TGCGGGAATATTTTGCAACATA | 57.009 | 36.364 | 7.71 | 7.71 | 31.69 | 2.29 |
2004 | 2018 | 3.883830 | TGCGGGAATATTTTGCAACAT | 57.116 | 38.095 | 0.00 | 0.00 | 31.69 | 2.71 |
2005 | 2019 | 3.667497 | TTGCGGGAATATTTTGCAACA | 57.333 | 38.095 | 14.93 | 0.00 | 40.31 | 3.33 |
2007 | 2021 | 3.667497 | TGTTGCGGGAATATTTTGCAA | 57.333 | 38.095 | 14.93 | 14.93 | 42.68 | 4.08 |
2008 | 2022 | 3.321497 | GTTGTTGCGGGAATATTTTGCA | 58.679 | 40.909 | 6.21 | 6.21 | 0.00 | 4.08 |
2009 | 2023 | 2.344142 | CGTTGTTGCGGGAATATTTTGC | 59.656 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
2010 | 2024 | 3.570559 | ACGTTGTTGCGGGAATATTTTG | 58.429 | 40.909 | 0.00 | 0.00 | 35.98 | 2.44 |
2011 | 2025 | 3.926821 | ACGTTGTTGCGGGAATATTTT | 57.073 | 38.095 | 0.00 | 0.00 | 35.98 | 1.82 |
2012 | 2026 | 4.142556 | CCTTACGTTGTTGCGGGAATATTT | 60.143 | 41.667 | 0.00 | 0.00 | 35.98 | 1.40 |
2013 | 2027 | 3.375922 | CCTTACGTTGTTGCGGGAATATT | 59.624 | 43.478 | 0.00 | 0.00 | 35.98 | 1.28 |
2014 | 2028 | 2.940410 | CCTTACGTTGTTGCGGGAATAT | 59.060 | 45.455 | 0.00 | 0.00 | 35.98 | 1.28 |
2015 | 2029 | 2.348660 | CCTTACGTTGTTGCGGGAATA | 58.651 | 47.619 | 0.00 | 0.00 | 35.98 | 1.75 |
2016 | 2030 | 1.161843 | CCTTACGTTGTTGCGGGAAT | 58.838 | 50.000 | 0.00 | 0.00 | 35.98 | 3.01 |
2017 | 2031 | 0.885596 | CCCTTACGTTGTTGCGGGAA | 60.886 | 55.000 | 0.00 | 0.00 | 33.46 | 3.97 |
2018 | 2032 | 1.301874 | CCCTTACGTTGTTGCGGGA | 60.302 | 57.895 | 0.00 | 0.00 | 33.46 | 5.14 |
2019 | 2033 | 2.329614 | CCCCTTACGTTGTTGCGGG | 61.330 | 63.158 | 0.00 | 0.00 | 35.98 | 6.13 |
2020 | 2034 | 2.973316 | GCCCCTTACGTTGTTGCGG | 61.973 | 63.158 | 0.00 | 0.00 | 35.98 | 5.69 |
2021 | 2035 | 1.582610 | ATGCCCCTTACGTTGTTGCG | 61.583 | 55.000 | 0.00 | 0.00 | 37.94 | 4.85 |
2022 | 2036 | 1.455248 | TATGCCCCTTACGTTGTTGC | 58.545 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2023 | 2037 | 2.162809 | GGTTATGCCCCTTACGTTGTTG | 59.837 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2024 | 2038 | 2.040679 | AGGTTATGCCCCTTACGTTGTT | 59.959 | 45.455 | 0.00 | 0.00 | 38.26 | 2.83 |
2025 | 2039 | 1.631898 | AGGTTATGCCCCTTACGTTGT | 59.368 | 47.619 | 0.00 | 0.00 | 38.26 | 3.32 |
2026 | 2040 | 2.413310 | AGGTTATGCCCCTTACGTTG | 57.587 | 50.000 | 0.00 | 0.00 | 38.26 | 4.10 |
2027 | 2041 | 3.109928 | ACTAGGTTATGCCCCTTACGTT | 58.890 | 45.455 | 0.00 | 0.00 | 38.26 | 3.99 |
2028 | 2042 | 2.755686 | ACTAGGTTATGCCCCTTACGT | 58.244 | 47.619 | 0.00 | 0.00 | 38.26 | 3.57 |
2029 | 2043 | 6.786967 | ATATACTAGGTTATGCCCCTTACG | 57.213 | 41.667 | 0.00 | 0.00 | 38.26 | 3.18 |
2031 | 2045 | 9.887862 | GGTATATATACTAGGTTATGCCCCTTA | 57.112 | 37.037 | 19.78 | 0.00 | 34.04 | 2.69 |
2032 | 2046 | 8.584574 | AGGTATATATACTAGGTTATGCCCCTT | 58.415 | 37.037 | 19.78 | 0.00 | 34.04 | 3.95 |
2033 | 2047 | 8.139519 | AGGTATATATACTAGGTTATGCCCCT | 57.860 | 38.462 | 19.78 | 3.92 | 34.04 | 4.79 |
2034 | 2048 | 9.887862 | TTAGGTATATATACTAGGTTATGCCCC | 57.112 | 37.037 | 19.78 | 1.86 | 34.04 | 5.80 |
2055 | 2069 | 8.621073 | GGGATAATGGGGATAAATTACTTAGGT | 58.379 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
2056 | 2070 | 8.620177 | TGGGATAATGGGGATAAATTACTTAGG | 58.380 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
2059 | 2073 | 9.912461 | AATTGGGATAATGGGGATAAATTACTT | 57.088 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2060 | 2074 | 9.547279 | GAATTGGGATAATGGGGATAAATTACT | 57.453 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2061 | 2075 | 9.547279 | AGAATTGGGATAATGGGGATAAATTAC | 57.453 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2062 | 2076 | 9.768215 | GAGAATTGGGATAATGGGGATAAATTA | 57.232 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2063 | 2077 | 8.467624 | AGAGAATTGGGATAATGGGGATAAATT | 58.532 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2064 | 2078 | 8.016095 | AGAGAATTGGGATAATGGGGATAAAT | 57.984 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2065 | 2079 | 7.074880 | TGAGAGAATTGGGATAATGGGGATAAA | 59.925 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
2066 | 2080 | 6.566091 | TGAGAGAATTGGGATAATGGGGATAA | 59.434 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
2067 | 2081 | 6.097753 | TGAGAGAATTGGGATAATGGGGATA | 58.902 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2068 | 2082 | 4.921991 | TGAGAGAATTGGGATAATGGGGAT | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2069 | 2083 | 4.315115 | TGAGAGAATTGGGATAATGGGGA | 58.685 | 43.478 | 0.00 | 0.00 | 0.00 | 4.81 |
2070 | 2084 | 4.729552 | TGAGAGAATTGGGATAATGGGG | 57.270 | 45.455 | 0.00 | 0.00 | 0.00 | 4.96 |
2071 | 2085 | 5.448654 | TGTTGAGAGAATTGGGATAATGGG | 58.551 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
2072 | 2086 | 6.516194 | GCATGTTGAGAGAATTGGGATAATGG | 60.516 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
2073 | 2087 | 6.040054 | TGCATGTTGAGAGAATTGGGATAATG | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
2074 | 2088 | 6.040166 | GTGCATGTTGAGAGAATTGGGATAAT | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
2075 | 2089 | 5.357878 | GTGCATGTTGAGAGAATTGGGATAA | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2076 | 2090 | 4.883585 | GTGCATGTTGAGAGAATTGGGATA | 59.116 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2077 | 2091 | 3.698040 | GTGCATGTTGAGAGAATTGGGAT | 59.302 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2078 | 2092 | 3.084039 | GTGCATGTTGAGAGAATTGGGA | 58.916 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
2079 | 2093 | 2.821378 | TGTGCATGTTGAGAGAATTGGG | 59.179 | 45.455 | 0.00 | 0.00 | 0.00 | 4.12 |
2080 | 2094 | 3.253921 | TGTGTGCATGTTGAGAGAATTGG | 59.746 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2081 | 2095 | 4.492791 | TGTGTGCATGTTGAGAGAATTG | 57.507 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
2082 | 2096 | 5.055642 | CATGTGTGCATGTTGAGAGAATT | 57.944 | 39.130 | 0.00 | 0.00 | 45.48 | 2.17 |
2083 | 2097 | 4.696899 | CATGTGTGCATGTTGAGAGAAT | 57.303 | 40.909 | 0.00 | 0.00 | 45.48 | 2.40 |
2097 | 2111 | 3.380320 | AGAATGATGATGTGGCATGTGTG | 59.620 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
2098 | 2112 | 3.628008 | AGAATGATGATGTGGCATGTGT | 58.372 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
2099 | 2113 | 3.883489 | AGAGAATGATGATGTGGCATGTG | 59.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
2100 | 2114 | 4.135306 | GAGAGAATGATGATGTGGCATGT | 58.865 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
2101 | 2115 | 4.390264 | AGAGAGAATGATGATGTGGCATG | 58.610 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
2102 | 2116 | 4.102681 | TGAGAGAGAATGATGATGTGGCAT | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
2103 | 2117 | 3.453353 | TGAGAGAGAATGATGATGTGGCA | 59.547 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
2104 | 2118 | 4.069300 | TGAGAGAGAATGATGATGTGGC | 57.931 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
2105 | 2119 | 5.425630 | TGTTGAGAGAGAATGATGATGTGG | 58.574 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
2106 | 2120 | 6.511929 | GCATGTTGAGAGAGAATGATGATGTG | 60.512 | 42.308 | 0.00 | 0.00 | 0.00 | 3.21 |
2107 | 2121 | 5.527951 | GCATGTTGAGAGAGAATGATGATGT | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2108 | 2122 | 5.527582 | TGCATGTTGAGAGAGAATGATGATG | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2109 | 2123 | 5.681639 | TGCATGTTGAGAGAGAATGATGAT | 58.318 | 37.500 | 0.00 | 0.00 | 0.00 | 2.45 |
2110 | 2124 | 5.093849 | TGCATGTTGAGAGAGAATGATGA | 57.906 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
2111 | 2125 | 6.929606 | TCTATGCATGTTGAGAGAGAATGATG | 59.070 | 38.462 | 10.16 | 0.00 | 0.00 | 3.07 |
2112 | 2126 | 7.063934 | TCTATGCATGTTGAGAGAGAATGAT | 57.936 | 36.000 | 10.16 | 0.00 | 0.00 | 2.45 |
2113 | 2127 | 6.475596 | TCTATGCATGTTGAGAGAGAATGA | 57.524 | 37.500 | 10.16 | 0.00 | 0.00 | 2.57 |
2114 | 2128 | 7.117092 | CAGATCTATGCATGTTGAGAGAGAATG | 59.883 | 40.741 | 10.16 | 1.84 | 0.00 | 2.67 |
2115 | 2129 | 7.015389 | TCAGATCTATGCATGTTGAGAGAGAAT | 59.985 | 37.037 | 10.16 | 0.00 | 0.00 | 2.40 |
2116 | 2130 | 6.323225 | TCAGATCTATGCATGTTGAGAGAGAA | 59.677 | 38.462 | 10.16 | 0.00 | 0.00 | 2.87 |
2117 | 2131 | 5.832060 | TCAGATCTATGCATGTTGAGAGAGA | 59.168 | 40.000 | 10.16 | 1.31 | 0.00 | 3.10 |
2118 | 2132 | 6.086785 | TCAGATCTATGCATGTTGAGAGAG | 57.913 | 41.667 | 10.16 | 0.00 | 0.00 | 3.20 |
2119 | 2133 | 6.475596 | TTCAGATCTATGCATGTTGAGAGA | 57.524 | 37.500 | 10.16 | 2.95 | 0.00 | 3.10 |
2120 | 2134 | 7.658167 | AGAATTCAGATCTATGCATGTTGAGAG | 59.342 | 37.037 | 10.16 | 0.00 | 0.00 | 3.20 |
2121 | 2135 | 7.506971 | AGAATTCAGATCTATGCATGTTGAGA | 58.493 | 34.615 | 10.16 | 4.19 | 0.00 | 3.27 |
2122 | 2136 | 7.095144 | GGAGAATTCAGATCTATGCATGTTGAG | 60.095 | 40.741 | 10.16 | 0.00 | 0.00 | 3.02 |
2123 | 2137 | 6.709397 | GGAGAATTCAGATCTATGCATGTTGA | 59.291 | 38.462 | 10.16 | 5.40 | 0.00 | 3.18 |
2124 | 2138 | 6.485648 | TGGAGAATTCAGATCTATGCATGTTG | 59.514 | 38.462 | 10.16 | 0.00 | 0.00 | 3.33 |
2125 | 2139 | 6.485984 | GTGGAGAATTCAGATCTATGCATGTT | 59.514 | 38.462 | 10.16 | 0.00 | 0.00 | 2.71 |
2126 | 2140 | 5.996513 | GTGGAGAATTCAGATCTATGCATGT | 59.003 | 40.000 | 10.16 | 0.00 | 0.00 | 3.21 |
2127 | 2141 | 5.995897 | TGTGGAGAATTCAGATCTATGCATG | 59.004 | 40.000 | 10.16 | 0.00 | 0.00 | 4.06 |
2128 | 2142 | 5.996513 | GTGTGGAGAATTCAGATCTATGCAT | 59.003 | 40.000 | 8.44 | 3.79 | 0.00 | 3.96 |
2129 | 2143 | 5.104817 | TGTGTGGAGAATTCAGATCTATGCA | 60.105 | 40.000 | 8.44 | 0.00 | 0.00 | 3.96 |
2130 | 2144 | 5.363101 | TGTGTGGAGAATTCAGATCTATGC | 58.637 | 41.667 | 8.44 | 0.00 | 0.00 | 3.14 |
2131 | 2145 | 6.073167 | GCATGTGTGGAGAATTCAGATCTATG | 60.073 | 42.308 | 8.44 | 5.40 | 0.00 | 2.23 |
2132 | 2146 | 5.996513 | GCATGTGTGGAGAATTCAGATCTAT | 59.003 | 40.000 | 8.44 | 0.00 | 0.00 | 1.98 |
2133 | 2147 | 5.363101 | GCATGTGTGGAGAATTCAGATCTA | 58.637 | 41.667 | 8.44 | 0.00 | 0.00 | 1.98 |
2134 | 2148 | 4.197750 | GCATGTGTGGAGAATTCAGATCT | 58.802 | 43.478 | 8.44 | 0.00 | 0.00 | 2.75 |
2135 | 2149 | 3.314635 | GGCATGTGTGGAGAATTCAGATC | 59.685 | 47.826 | 8.44 | 0.00 | 0.00 | 2.75 |
2136 | 2150 | 3.285484 | GGCATGTGTGGAGAATTCAGAT | 58.715 | 45.455 | 8.44 | 0.00 | 0.00 | 2.90 |
2137 | 2151 | 2.040145 | TGGCATGTGTGGAGAATTCAGA | 59.960 | 45.455 | 8.44 | 0.00 | 0.00 | 3.27 |
2138 | 2152 | 2.163010 | GTGGCATGTGTGGAGAATTCAG | 59.837 | 50.000 | 8.44 | 0.00 | 0.00 | 3.02 |
2139 | 2153 | 2.161855 | GTGGCATGTGTGGAGAATTCA | 58.838 | 47.619 | 8.44 | 0.00 | 0.00 | 2.57 |
2140 | 2154 | 1.474077 | GGTGGCATGTGTGGAGAATTC | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
2141 | 2155 | 1.076024 | AGGTGGCATGTGTGGAGAATT | 59.924 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
2142 | 2156 | 0.700564 | AGGTGGCATGTGTGGAGAAT | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2143 | 2157 | 0.036732 | GAGGTGGCATGTGTGGAGAA | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2144 | 2158 | 1.126948 | TGAGGTGGCATGTGTGGAGA | 61.127 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2145 | 2159 | 0.034767 | ATGAGGTGGCATGTGTGGAG | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2146 | 2160 | 0.035152 | GATGAGGTGGCATGTGTGGA | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2147 | 2161 | 0.322726 | TGATGAGGTGGCATGTGTGG | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2148 | 2162 | 1.536940 | TTGATGAGGTGGCATGTGTG | 58.463 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2149 | 2163 | 2.291209 | TTTGATGAGGTGGCATGTGT | 57.709 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2150 | 2164 | 3.243805 | TGTTTTTGATGAGGTGGCATGTG | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
2151 | 2165 | 2.964464 | TGTTTTTGATGAGGTGGCATGT | 59.036 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
2152 | 2166 | 3.006110 | AGTGTTTTTGATGAGGTGGCATG | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
2153 | 2167 | 3.233507 | AGTGTTTTTGATGAGGTGGCAT | 58.766 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
2154 | 2168 | 2.665165 | AGTGTTTTTGATGAGGTGGCA | 58.335 | 42.857 | 0.00 | 0.00 | 0.00 | 4.92 |
2155 | 2169 | 4.846779 | TTAGTGTTTTTGATGAGGTGGC | 57.153 | 40.909 | 0.00 | 0.00 | 0.00 | 5.01 |
2156 | 2170 | 8.661352 | AAAAATTAGTGTTTTTGATGAGGTGG | 57.339 | 30.769 | 0.00 | 0.00 | 39.20 | 4.61 |
2179 | 2193 | 3.131223 | TCCCATGCGTGTTGAAAGAAAAA | 59.869 | 39.130 | 4.96 | 0.00 | 0.00 | 1.94 |
2180 | 2194 | 2.690497 | TCCCATGCGTGTTGAAAGAAAA | 59.310 | 40.909 | 4.96 | 0.00 | 0.00 | 2.29 |
2181 | 2195 | 2.302260 | TCCCATGCGTGTTGAAAGAAA | 58.698 | 42.857 | 4.96 | 0.00 | 0.00 | 2.52 |
2182 | 2196 | 1.974265 | TCCCATGCGTGTTGAAAGAA | 58.026 | 45.000 | 4.96 | 0.00 | 0.00 | 2.52 |
2183 | 2197 | 1.974265 | TTCCCATGCGTGTTGAAAGA | 58.026 | 45.000 | 4.96 | 0.00 | 0.00 | 2.52 |
2184 | 2198 | 2.791383 | TTTCCCATGCGTGTTGAAAG | 57.209 | 45.000 | 13.79 | 0.00 | 0.00 | 2.62 |
2185 | 2199 | 3.823873 | AGTATTTCCCATGCGTGTTGAAA | 59.176 | 39.130 | 17.91 | 17.91 | 32.36 | 2.69 |
2186 | 2200 | 3.417101 | AGTATTTCCCATGCGTGTTGAA | 58.583 | 40.909 | 4.96 | 4.69 | 0.00 | 2.69 |
2187 | 2201 | 3.066291 | AGTATTTCCCATGCGTGTTGA | 57.934 | 42.857 | 4.96 | 0.00 | 0.00 | 3.18 |
2188 | 2202 | 3.938963 | AGTAGTATTTCCCATGCGTGTTG | 59.061 | 43.478 | 4.96 | 0.00 | 0.00 | 3.33 |
2189 | 2203 | 4.216411 | AGTAGTATTTCCCATGCGTGTT | 57.784 | 40.909 | 4.96 | 0.00 | 0.00 | 3.32 |
2190 | 2204 | 3.906720 | AGTAGTATTTCCCATGCGTGT | 57.093 | 42.857 | 4.96 | 0.00 | 0.00 | 4.49 |
2191 | 2205 | 8.547967 | AATATAAGTAGTATTTCCCATGCGTG | 57.452 | 34.615 | 0.00 | 0.00 | 0.00 | 5.34 |
2192 | 2206 | 8.594550 | AGAATATAAGTAGTATTTCCCATGCGT | 58.405 | 33.333 | 0.00 | 0.00 | 0.00 | 5.24 |
2193 | 2207 | 8.873830 | CAGAATATAAGTAGTATTTCCCATGCG | 58.126 | 37.037 | 0.00 | 0.00 | 0.00 | 4.73 |
2194 | 2208 | 8.669243 | GCAGAATATAAGTAGTATTTCCCATGC | 58.331 | 37.037 | 0.00 | 0.00 | 0.00 | 4.06 |
2195 | 2209 | 9.725019 | TGCAGAATATAAGTAGTATTTCCCATG | 57.275 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.