>input_sequence_86512
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---------------------------------------------------ATGAGTGGAGGTAACAATGGTTCCGGAAA
GGTGGAGTGGCCGGAGCTGTTGGGCGCCCCGGCGACGCCGGCGGTGAGCAAGATCCGCCGGGACAGGCCGGACGTCAACG
TGGTGGTGCTCCCGGACCAAACTCCGGTGCCCATTGGGTTCAACAGCAAGCGCGTCCGCGTCTTCTACGACTCGCAACAG
CCCGGTGCACTTGTCGCCAACATCCCCATGGTCGGCTAG-----------------------------------------
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>chr6D_1_TraesCS6D01G073000
AATTCAAAATAATTAAAATAATTAACCAAATAATTTTCATTTTGTAATGTTCTATACAATTCATAAATTTATTTAAACAT
TAAAGTTTATTTTAATGTTTTGAAATATTTACAATTTCAATG-TCAAACAAATACTTCAAAATATTTCC-GTATCTACTG
AATTTACTTTGAGCTATAAATATCAAAAATTTAAA---CGGACTATAATGTTGCTATAGCGTTTGGAGCGGCACAACGCT
AAAGTTGTGTGGGTTTACA-TAAATGAATTTTGTCGCTAATAGCGGACAATAGCGTGATT-TAGCGCTAAACTTGGGCCT
CAAATTAGGGTCACACTAAAGCTATGTCAAGCTCTTCTTTGTTATGGCTAGATGCTTTGCTGGTATGCCTTTGTTATGGT
TGCATGCTGCTATGCTTGATTGTATG---TTTTCTATATAGTTTAAGCGAAAACGCTAAATGGGGCTTAACTTTTGTATA
TGTTTTCGTAACTTTTGGATGAGCCACCAGTAAATGGGATAGCCTGCTATTTAAAATTTTGATAGATATACAATTGAAAT
GACTGAAATATTTTGACCAAAAGGTAGTACTTTGGTATCTACAAAAATTATTGAAATTCAGCTAATTTCAACAGCATCTC
ACTGAAAGTGAAAACCAATGCAACCACTAGACTGAAATCCAATGTGGCAGTATATTATGACGGACAATACCAAGATAATA
GGTGTGAATACACGAAAACAGAAAAAA-CAAAACAAAAGAAGCCATACCTTTACTCAAGTCTTATTGAGAGCATCTTAGC
GAAAAGGTTAAAATCTAGCTACGCATGCATCAAGGAAACAAGCAAAAGTTCAACTGACCAAACAAGGCAAAGGGCGTCCG
GCAAAGCCAACGCTCTAGTAATGGCGGCATTCGTTGCCTGCAATCCATAAATACAAGTATGTATAAAGAGTCATTGTGAG
TGTATACATCTGGCAGACGTGCACACATCAGTAATAATTAAACAGATCGAGATGAGTGGAGGTAACAATGGTTCCGGAAA
GGTGGAGTGGCCGGAGCTGTTGGGCGCCCCGGCGACGCCGGCGGTGAGCAAGATCCGCCGGGACAGGCCGGACGTCAACG
TGGTGGTGCTCCCGGACCAAACTCCGGTGCCCATTGGGTTCAACAGCAAGCGCGTCCGCGTCTTCTACGACTCGCAACAG
CCCGGTGCACTTGTCGCCAACATCCCCATGGTCGGCTAGCCAGCCGGCCGGACGGCGGGCACGCATATGCGTGCATTCCA
GTCGATCGACAGCTGAATAATAATGCCATAGCGCTGTCGCCCTCATGTATTGGATACGTTCCCTGTACTCGATTGCGCTG
GCTCGGTTTTTGCTTATTTCAATCAATAGAAGGTGATTGTTCTGTAAATCCTATGATGAGAAATAATCATTTATAAGTTT
ATCAAATTGTAAGTAAGGAATCTTATCTTCTATATCTAAATAGCTAACCCCCAGTAACTATTTCTCTCAACATGCAAGCA
TGACACATCATCACACAACATGCATGAGAAAAG-GCCCACCCCAACTATCATATGTCTCTCGACATGCAAGCATATACCA
CTTCATTATGACATGCATGAAAAAAAGATCCATCTCAACATGTAAATATACATGAGAATTTCCATTCTATTATGCTACAT
ATATTTAATTAAAAA-GTTACCTCCCACTAACTATTACTCTCAACATGCAAGCATACAACATCATTGCACAACATGCATG
AGAAAAGGCCCACCCTCACTATCATATGTCTCTCAACATGCAAGCATGCCACTTCATCATGACATGCATGGAAAGAAGAC
ACATCTCAACAAGCAAATGTACATGAGAATTATCATTCTATTATTATTATTATTGTTATATATATATATATATATATAAA
TTAGAAATATAGTAATCAAACATAATAAATTCTATGTATTTTTAGTTTTAGCTTTTTATAAAACATTCATGTTTCATACA
ACGGATGGCATTGAAATATGTTGCAAAATATTCCCGCAACAACGTAAGGGGCATAACCTAGTATATATACCTAAGTAATT
TATCCCCATTATCCCAATTCTCTCAACATGCACACATGCCACATCATCATTCTCTCTCAACATGCATAGATCTGAATTCT
CCACACATGCCACCTCATCAAAAACACTAATTTTTTTCTTTCAACACGCATGGGAAATACTACTTATATTCTGCATATAT
T
>chr6A_1
AATTCAAAAAATAATAAT---TTAACCAAACATTTTCCATTTA-TAATGTTCTATGTAATTCATAAATTTATTTGGACAT
TAAAGTTTATTTTAATGTTTTGAAATATTTAAAAGTTCAATGTTCAAACAAATACTTCAAAATATTTTCGGTATCTACTG
AACTTACTTTGAACTATAAATATCAAAATTTTAAATAGCATACTATAATGTTGCTATAGCGTTTGGAGTGGCATAACGCT
AAAGTTGTGTGTGTTTATGCTAAATGAATTTTGTCGCTAATAGCAGACAATAGCGTGATTTTAGCGCTAAACTTGGGCCT
CACTTTAGCGTCACACCAAAGCTATGCCAAGCGTTTCTTTGTTATAGCTAGATGCTTTGCTGGTATGCCTTTGTTATGGT
TGCATGCTGCTATGCTTGATTGTACAGTTTTTT-TTTATAGTTC-------AACGCTAAATGTGGCTTAACTTC------
----------------------------------TGGCATAGCCTGCTATATAATTTTTTGATAACTATACAACTGTAAT
GACTGAAATATTTTGATCAAAAGGTAATACTTTGGTATCAACAAAAATTATTGAAATTCAGCGAATTTCAACAGCATCTC
ACTGAAAGTGAAAACCAATGCAACCACTAGACTGAAATCCAATGTGGCAGTATATTATGACGGACAGTACCAAGATAATA
GGTGTGA-TACACGAAAACGGAAAAAAACAAAACAATAAAAGCCATACCTTTACTCAAGTCTTATTGACCAAACAGGC--
--AAAAGTTCAAATCTAGCTACGAATGCATCAAGGAAACAAGCAAAAGTTCAACTGACCAAACAAGGC-AAGGGCGTCCG
GCAAAGCCAACGCTCTAGTAATGACGGCATTCGTTGCTTGCAATCCATAAATACAGGTATGAGTAAAGAGTCAATGTGAG
TGTATACATCTGGCAGACGTGCACACATCAGTAATAATTAAACAGATCGAGATGAGCGGAGGTAACAATGGTCCCGAAAA
GGTGGAGTGGCCGGAGCTGTTGGGCGTCCCGGCGACGCCGGCGGTGAGCAAGATCCGCCGGGACAGGCCGGACGTCACCG
TGGTGGTGCTTCCGGACCAAACTCCGGTGCCCATTGGGTTCAACAGCAAGCGCGTCCGCGTCTTCTACGACTCGCAACAG
CCCGAAGCACTTGTCGCCAACATCCCCATGGTCGGCTAGCCTGCCGGCCGGACGGCGGCCACGCATATGCGTGCATTCCG
GTCGATCGGCAGCTGAATAATAATGCCATAGCGCTGTGGCCCTCATGCA-TGGATACGTTACCTGCACTCGATTGCACTG
GCTCGGTTTATGCTTATTTCAATCAATAGAAGGTGATTGTTCTGTAAATTCTATGAAGAGAAATAATCATTTACAAGTTT
ATCAAATTGTAAGTAAGGAATCTTATCTTCTGTATCTAAATAACTAACTCCCACTAACTATTTATCTCAACATGCAAGCA
TGCCATATCATCACACGACATGCATGAGAAAAATGCCCACCCCAATTATCATATGTCTCTCAACATGCAAGCAT--ACCA
CTTCATTATGGCTTGCATGA-AAAAAGATCCATCTCAACATGCAAATATACATAAGAATTTTTATTCTATTATGCTACAT
ATATTTGATTAAAAAAGTTACCTCCTACTAACTAGTACTCTCAACATGCAAGCATACAACATCATCTCATAACATGCATG
AGAAAAGCCCACCCCT-ACTATCATATGTCTCTTAACAAGCAAGCATGCCACTTCATC----------------------
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>chr6B_15
AA----------AACAAT---TTAGCCAAATAATTTTCATTTTCTAATGTTCTATACAATTCATAAATTTATTTAAAAAT
AAACTTTA--TTTAATGTTTTGAAATATTTAAAATTTAAATG-TCAAACAAATACTTCAAAATATTTCC-GTATCTACTG
AATTTACTTTGAGCTATAAATATCAAATTTTTAAATAGCGGACTATAATGTTGCTATAGCGTTTG-AGCGGCACAACGCT
AAAGTTGTCTGGGTTTACGCTAAACGAATTTTGTCGCTAATAGCAGACAATAGCATGATTT-AGCGCTAAACTTGGGCCT
CAATTTAGGGTCACACTAAAGCTATGTCAAGCTTTTCTTTGTTATGGTTAGATGCTTGG-TGGTATGCCTTTGTTATGGT
TGCATGCTGTTATGCTTCATTGTATG---TTTT-TATATAGTTTAAGCAAAAACCCTAAATGTGTCTTAACTTTTGTATA
TGTTTTCATAACTTTTGTATGAGCCACCAGTAAATGGCATAGCCTGCTACTTAAAGTTTTGATAGATATACAACTGAAAT
GACTGAAATATTTTGAACAAAAGGTAGTACTTTGGTATCTACAAAAATTATTGAAATTCAGCT-----------------
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>chr6B_603
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----------------------------------------------------GAAATTCAGCTAATTTCAACAGCATCTC
ACTGAAAGTGAA-ACCAATGCAACCACTAGACTGAAATCCAATGTGGCAGTATATTATGACGGACAGTACCAAGATAATT
GGTGTGAATACATGAAAACGGAAAAAA-CGAAACAAAAGAAGCCATACCTTTACTCAAGTCTTATTGAGAGCATCTTAGC
GAAAAGGTTAAAATCTAGCTACGCATGCATCAAGGAAACAAGCAAAAGTTCAACTGACCAAACAAGGCAAAGGGCGTCCG
GCAAAGCCAACGCTCTAGTAATGGCGGCATTCGTTGCCTGCAATCCATAAATACTGGTATGTGTAAAGAGTCATTGTGAG
TGTATACATCTGGCAGACGTGCACACATCAGTAATAATTAAACAGATCGAGATGAGCGGAGGTAACAATGGTTCCGAAAA
GGTGGAGTGGCCGGAGCTGTTGGGCGTCCCGGCGACGCCGGCGGTGAGCAAGATCCGCCGGGACAGGCCGGACGTCAACG
TGGTGGTGCTCCCGGACCAAACCCCGGTGCCCATTGGGTTCAACAGCAAGCGCGTACGCGTCTTCTACGATTCGCAACAG
CCGGGTGCACTTGTCGCCAACATCCCCATGGTCGGCTAGCCAGCCGGCCGGACGGCGGCCACGCATATGCGTGCATTCCG
GTCGATCGACAGCTGAATAATAACGCCATAGCGCTGTGGCCCTCATGCA-TGGATACGTTCCCTGTACTCTATTGCACTG
GCTCGGTTTATGCTTATTTCAATCAGTAGAAGGTGATTGCT---TAAGTCCTATGGTAAGAAATAA--------------
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>SNPs
---------S-SSSS--SSSS----------------------S------------------------------------
-------------------------------S------------------------------------------------
----------------------------S---------------------------------------------------
------------------S-------------------------S-----------------------------------
---S-----------------------------S----------------------------------------------
---------------------------------S--------------S-------------S-----------------
-------S---------S-------------------S-----------------S-----------------S------
----------------S---------------------------------------------------------------
------------------------------------------------------------------S-------------
-------------------S------------------------------------------------------------
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-------------------------------------------------------S------S-----------------
--------------------------------------------------------S-------------------S---
--------------------------S-----------------------------------------------------
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----------------------------------------------------------S--------------------S
-------------------------------------S---------S-S--------------------------S---
---------S---------------------------------------------------------------S------
-------------------------------S----------S-----S----S---------S----------------
--S--S----------S---------------S------------S---------------S------------SS----
----------S-S-------S---------------------S----------S-------SS-----------------
------S------------------S--------S------------------------------SS--S----------
-------S--SS----S----------------S----S-------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_324
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----------------------------------------------------------------CGCTAAACTTGGGCCT
CAAA----------------------------------------------------------------------------
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>reverse_2159
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------------------------------------------------------------------------------CT
CCACACATGCCACCTCAT--------------------------------------------------------------
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