Multiple sequence alignment - TraesCS6B01G454500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G454500 chr6B 100.000 2594 0 0 1 2594 712123700 712126293 0.000000e+00 4791.0
1 TraesCS6B01G454500 chr6B 95.745 94 4 0 1802 1895 642728822 642728729 4.470000e-33 152.0
2 TraesCS6B01G454500 chr6A 82.720 1059 118 27 798 1808 613244829 613245870 0.000000e+00 881.0
3 TraesCS6B01G454500 chr6D 93.636 550 26 6 68 613 466942892 466943436 0.000000e+00 813.0
4 TraesCS6B01G454500 chr6D 86.101 554 35 13 614 1153 466943468 466943993 2.250000e-155 558.0
5 TraesCS6B01G454500 chr6D 83.806 599 54 17 1247 1808 466944114 466944706 1.770000e-146 529.0
6 TraesCS6B01G454500 chr6D 82.423 586 73 16 1902 2468 466944716 466945290 3.880000e-133 484.0
7 TraesCS6B01G454500 chr2B 98.851 87 1 0 1806 1892 644847628 644847714 3.460000e-34 156.0
8 TraesCS6B01G454500 chr2B 95.699 93 4 0 1807 1899 160691316 160691408 1.610000e-32 150.0
9 TraesCS6B01G454500 chr7B 95.789 95 4 0 1806 1900 171202725 171202631 1.240000e-33 154.0
10 TraesCS6B01G454500 chr4A 97.753 89 2 0 1806 1894 38740444 38740532 1.240000e-33 154.0
11 TraesCS6B01G454500 chr4A 78.358 134 24 4 1 131 651802185 651802316 5.950000e-12 82.4
12 TraesCS6B01G454500 chr2A 97.753 89 2 0 1807 1895 24958862 24958950 1.240000e-33 154.0
13 TraesCS6B01G454500 chr2A 81.890 127 22 1 1 127 757788518 757788643 3.530000e-19 106.0
14 TraesCS6B01G454500 chr2D 96.739 92 2 1 1807 1898 612499287 612499197 4.470000e-33 152.0
15 TraesCS6B01G454500 chr7D 95.699 93 4 0 1807 1899 163634727 163634819 1.610000e-32 150.0
16 TraesCS6B01G454500 chr5D 94.737 95 5 0 1801 1895 253048867 253048773 5.780000e-32 148.0
17 TraesCS6B01G454500 chr1B 83.846 130 18 3 7 135 550923169 550923042 1.260000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G454500 chr6B 712123700 712126293 2593 False 4791 4791 100.0000 1 2594 1 chr6B.!!$F1 2593
1 TraesCS6B01G454500 chr6A 613244829 613245870 1041 False 881 881 82.7200 798 1808 1 chr6A.!!$F1 1010
2 TraesCS6B01G454500 chr6D 466942892 466945290 2398 False 596 813 86.4915 68 2468 4 chr6D.!!$F1 2400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1009 0.620121 CTGCTCTTCTTCCTCCCCCT 60.62 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 2724 0.096628 GCTCGTCGCTCGTCTCTTAA 59.903 55.0 0.0 0.0 40.8 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.863153 GCACGCTTGCTACACTGG 59.137 61.111 8.12 0.00 46.17 4.00
27 28 2.863153 CACGCTTGCTACACTGGC 59.137 61.111 0.00 0.00 0.00 4.85
28 29 1.960763 CACGCTTGCTACACTGGCA 60.961 57.895 0.00 0.00 37.97 4.92
29 30 1.003355 ACGCTTGCTACACTGGCAT 60.003 52.632 0.00 0.00 39.54 4.40
30 31 1.300971 ACGCTTGCTACACTGGCATG 61.301 55.000 0.00 0.00 39.54 4.06
31 32 1.020861 CGCTTGCTACACTGGCATGA 61.021 55.000 0.00 0.00 39.54 3.07
32 33 1.167851 GCTTGCTACACTGGCATGAA 58.832 50.000 0.00 0.00 39.54 2.57
33 34 1.135575 GCTTGCTACACTGGCATGAAC 60.136 52.381 0.00 0.00 39.54 3.18
34 35 2.153645 CTTGCTACACTGGCATGAACA 58.846 47.619 0.00 0.00 39.54 3.18
35 36 2.495155 TGCTACACTGGCATGAACAT 57.505 45.000 0.00 0.00 34.56 2.71
36 37 2.358957 TGCTACACTGGCATGAACATC 58.641 47.619 0.00 0.00 34.56 3.06
37 38 2.026915 TGCTACACTGGCATGAACATCT 60.027 45.455 0.00 0.00 34.56 2.90
38 39 3.197549 TGCTACACTGGCATGAACATCTA 59.802 43.478 0.00 0.00 34.56 1.98
39 40 4.191544 GCTACACTGGCATGAACATCTAA 58.808 43.478 0.00 0.00 0.00 2.10
40 41 4.635765 GCTACACTGGCATGAACATCTAAA 59.364 41.667 0.00 0.00 0.00 1.85
41 42 5.123820 GCTACACTGGCATGAACATCTAAAA 59.876 40.000 0.00 0.00 0.00 1.52
42 43 6.349280 GCTACACTGGCATGAACATCTAAAAA 60.349 38.462 0.00 0.00 0.00 1.94
159 160 6.441088 AAGTCCATAACAGAAAAGAGGTCT 57.559 37.500 0.00 0.00 0.00 3.85
195 196 2.174685 TATGGGAGGCAGAGTGCTTA 57.825 50.000 0.00 0.00 44.28 3.09
198 199 0.833287 GGGAGGCAGAGTGCTTATGA 59.167 55.000 0.00 0.00 44.28 2.15
204 205 1.391485 GCAGAGTGCTTATGACGTGTG 59.609 52.381 0.00 0.00 40.96 3.82
264 269 4.835615 TGCTAAGGTGAGAAGAGAGAAACT 59.164 41.667 0.00 0.00 0.00 2.66
268 273 7.544217 GCTAAGGTGAGAAGAGAGAAACTAAAG 59.456 40.741 0.00 0.00 0.00 1.85
333 338 4.825546 GGCAACAATATCTCTCACCATG 57.174 45.455 0.00 0.00 0.00 3.66
385 390 8.823818 GGTATAACTAACACATAACCATCACAC 58.176 37.037 0.00 0.00 0.00 3.82
448 453 7.568199 AATAAAATATACGCAAACCAGCTCT 57.432 32.000 0.00 0.00 0.00 4.09
461 466 3.725634 ACCAGCTCTATTAGACCCTGTT 58.274 45.455 12.29 0.86 0.00 3.16
516 521 1.877443 ACGGTGTCAAATTTTCTCGGG 59.123 47.619 0.00 0.00 0.00 5.14
549 554 3.530265 TTTCGGTATGCTGTCGGTTAT 57.470 42.857 0.00 0.00 0.00 1.89
637 673 2.513204 CTGCAGCGTCATGGGAGG 60.513 66.667 0.00 0.00 0.00 4.30
706 742 2.999355 GCTTTTCGTCTCTTGAGATGCT 59.001 45.455 13.40 0.00 0.00 3.79
708 744 3.942130 TTTCGTCTCTTGAGATGCTGA 57.058 42.857 13.40 3.73 0.00 4.26
709 745 3.500558 TTCGTCTCTTGAGATGCTGAG 57.499 47.619 13.40 0.00 0.00 3.35
710 746 2.716217 TCGTCTCTTGAGATGCTGAGA 58.284 47.619 13.40 0.00 33.75 3.27
719 767 1.875813 GATGCTGAGACCTCACGCG 60.876 63.158 3.53 3.53 36.91 6.01
759 807 3.289834 CCCAGTGGCAGTGCACAC 61.290 66.667 21.04 21.97 37.86 3.82
760 808 2.516695 CCAGTGGCAGTGCACACA 60.517 61.111 27.53 12.14 39.99 3.72
761 809 1.900016 CCAGTGGCAGTGCACACAT 60.900 57.895 27.53 15.85 39.99 3.21
810 858 0.727398 GAGCACGTCCACTTATTGCC 59.273 55.000 0.00 0.00 33.48 4.52
811 859 1.019278 AGCACGTCCACTTATTGCCG 61.019 55.000 0.00 0.00 33.48 5.69
836 884 3.098555 CGCCGGATAAGGTTGTGC 58.901 61.111 5.05 0.00 0.00 4.57
848 896 1.008538 GTTGTGCTCCGCAACCAAG 60.009 57.895 9.78 0.00 45.56 3.61
849 897 2.844451 TTGTGCTCCGCAACCAAGC 61.844 57.895 0.00 0.00 41.47 4.01
850 898 4.043200 GTGCTCCGCAACCAAGCC 62.043 66.667 0.00 0.00 41.47 4.35
851 899 4.577677 TGCTCCGCAACCAAGCCA 62.578 61.111 0.00 0.00 34.76 4.75
857 905 4.368543 GCAACCAAGCCAGCCAGC 62.369 66.667 0.00 0.00 0.00 4.85
888 936 4.719369 GACCGCTCGTTCGCCAGT 62.719 66.667 0.00 0.00 0.00 4.00
891 939 4.717629 CGCTCGTTCGCCAGTCCA 62.718 66.667 0.00 0.00 0.00 4.02
892 940 3.112709 GCTCGTTCGCCAGTCCAC 61.113 66.667 0.00 0.00 0.00 4.02
956 1008 1.631071 CCTGCTCTTCTTCCTCCCCC 61.631 65.000 0.00 0.00 0.00 5.40
957 1009 0.620121 CTGCTCTTCTTCCTCCCCCT 60.620 60.000 0.00 0.00 0.00 4.79
973 1025 2.181975 CCCCTTACCAAACTCTCCGTA 58.818 52.381 0.00 0.00 0.00 4.02
994 1046 1.196808 GTGCCGTGGTTAATCAGTGTG 59.803 52.381 0.00 0.00 0.00 3.82
1005 1057 1.601419 ATCAGTGTGCAGCAATGGCC 61.601 55.000 13.88 0.00 42.79 5.36
1026 1078 2.719979 GCCTCCATGCTTCATGCG 59.280 61.111 1.47 0.00 46.63 4.73
1047 1099 1.536073 CGTCTCTCCTGGCAGTCCAA 61.536 60.000 14.43 0.00 42.91 3.53
1048 1100 0.036858 GTCTCTCCTGGCAGTCCAAC 60.037 60.000 14.43 1.34 42.91 3.77
1054 1106 1.672356 CTGGCAGTCCAACCCTTCG 60.672 63.158 6.28 0.00 42.91 3.79
1074 1126 1.817099 CGGACAGAGGAATGCTGCC 60.817 63.158 0.00 0.00 36.86 4.85
1075 1127 1.300963 GGACAGAGGAATGCTGCCA 59.699 57.895 0.00 0.00 36.86 4.92
1076 1128 0.747283 GGACAGAGGAATGCTGCCAG 60.747 60.000 0.00 0.00 36.86 4.85
1115 1167 2.282180 GGCGGCTTTCAGGGTTCA 60.282 61.111 0.00 0.00 0.00 3.18
1122 1174 1.228552 TTTCAGGGTTCAGGCAGCC 60.229 57.895 1.84 1.84 34.19 4.85
1165 1237 0.883833 CTGCATGGCTTCCTTCGTTT 59.116 50.000 0.00 0.00 0.00 3.60
1167 1239 0.881118 GCATGGCTTCCTTCGTTTCA 59.119 50.000 0.00 0.00 0.00 2.69
1168 1240 1.474077 GCATGGCTTCCTTCGTTTCAT 59.526 47.619 0.00 0.00 0.00 2.57
1169 1241 2.094545 GCATGGCTTCCTTCGTTTCATT 60.095 45.455 0.00 0.00 0.00 2.57
1170 1242 3.128589 GCATGGCTTCCTTCGTTTCATTA 59.871 43.478 0.00 0.00 0.00 1.90
1172 1244 4.280436 TGGCTTCCTTCGTTTCATTAGA 57.720 40.909 0.00 0.00 0.00 2.10
1173 1245 4.843728 TGGCTTCCTTCGTTTCATTAGAT 58.156 39.130 0.00 0.00 0.00 1.98
1175 1247 6.411376 TGGCTTCCTTCGTTTCATTAGATTA 58.589 36.000 0.00 0.00 0.00 1.75
1177 1249 7.556275 TGGCTTCCTTCGTTTCATTAGATTATT 59.444 33.333 0.00 0.00 0.00 1.40
1178 1250 9.052759 GGCTTCCTTCGTTTCATTAGATTATTA 57.947 33.333 0.00 0.00 0.00 0.98
1211 1283 6.342111 GGTTCTCCGAGATCTTAACATCTTT 58.658 40.000 0.00 0.00 32.94 2.52
1213 1285 7.201565 GGTTCTCCGAGATCTTAACATCTTTTG 60.202 40.741 0.00 0.00 32.94 2.44
1216 1292 5.351465 TCCGAGATCTTAACATCTTTTGTGC 59.649 40.000 0.00 0.00 38.99 4.57
1223 1299 8.752766 ATCTTAACATCTTTTGTGCTTGATTG 57.247 30.769 0.00 0.00 38.99 2.67
1240 1316 4.883083 TGATTGGTGTGTAGAGTTCAGAC 58.117 43.478 0.00 0.00 0.00 3.51
1242 1318 3.728076 TGGTGTGTAGAGTTCAGACAC 57.272 47.619 9.24 9.24 43.06 3.67
1253 1346 8.689061 TGTAGAGTTCAGACACAAGTTAGTTTA 58.311 33.333 0.00 0.00 0.00 2.01
1291 1388 1.150536 GACAGGTCCAGGTGCCAAA 59.849 57.895 5.76 0.00 0.00 3.28
1408 1505 2.565391 TCATCGTGGAGCTGGTAAGAAA 59.435 45.455 0.00 0.00 0.00 2.52
1414 1511 4.567159 CGTGGAGCTGGTAAGAAAATCTAC 59.433 45.833 0.00 0.00 0.00 2.59
1418 1517 6.122964 GGAGCTGGTAAGAAAATCTACCAAT 58.877 40.000 0.00 0.00 41.47 3.16
1587 1687 1.700186 GGGAAAGGCCTCGATATTCCT 59.300 52.381 25.52 0.00 39.56 3.36
1617 1719 1.055040 CTCTCCCTCCTTGCCTATGG 58.945 60.000 0.00 0.00 0.00 2.74
1621 1723 1.512194 TCCCTCCTTGCCTATGGGATA 59.488 52.381 0.00 0.00 41.57 2.59
1627 1729 5.429762 CCTCCTTGCCTATGGGATATTGATA 59.570 44.000 0.00 0.00 33.58 2.15
1646 1756 7.615582 TTGATACTAAGAGCCACATGAAAAG 57.384 36.000 0.00 0.00 0.00 2.27
1715 1849 6.985188 AAACGAGCTCTAAGCATTTCATTA 57.015 33.333 12.85 0.00 45.56 1.90
1744 1879 8.500837 TTGCTATTTTTCATTTTACACTCGTG 57.499 30.769 0.00 0.00 0.00 4.35
1746 1881 7.801315 TGCTATTTTTCATTTTACACTCGTGTC 59.199 33.333 5.89 0.00 43.74 3.67
1750 1885 3.054166 TCATTTTACACTCGTGTCACCG 58.946 45.455 5.89 0.00 43.74 4.94
1751 1886 1.210870 TTTTACACTCGTGTCACCGC 58.789 50.000 5.89 0.00 43.74 5.68
1752 1887 0.386476 TTTACACTCGTGTCACCGCT 59.614 50.000 5.89 0.00 43.74 5.52
1753 1888 1.237533 TTACACTCGTGTCACCGCTA 58.762 50.000 5.89 0.00 43.74 4.26
1758 1893 2.032924 CACTCGTGTCACCGCTATGATA 59.967 50.000 0.00 0.00 0.00 2.15
1760 1895 1.607148 TCGTGTCACCGCTATGATAGG 59.393 52.381 1.11 0.00 0.00 2.57
1761 1896 1.335964 CGTGTCACCGCTATGATAGGG 60.336 57.143 9.35 9.35 38.36 3.53
1770 1905 3.130164 CCGCTATGATAGGGAGAGTGATG 59.870 52.174 16.99 0.00 40.83 3.07
1777 1912 4.162320 TGATAGGGAGAGTGATGTTCAACC 59.838 45.833 0.00 0.00 0.00 3.77
1799 1934 4.047822 CCTCGACAATATTCTGCTGAGAC 58.952 47.826 0.00 0.00 0.00 3.36
1808 1943 1.103803 TCTGCTGAGACGGGTGATAC 58.896 55.000 0.00 0.00 0.00 2.24
1810 1945 1.066303 CTGCTGAGACGGGTGATACTC 59.934 57.143 0.00 0.00 0.00 2.59
1811 1946 0.386113 GCTGAGACGGGTGATACTCC 59.614 60.000 0.00 0.00 0.00 3.85
1812 1947 1.033574 CTGAGACGGGTGATACTCCC 58.966 60.000 0.00 0.00 41.41 4.30
1814 1949 1.320507 GAGACGGGTGATACTCCCTC 58.679 60.000 0.00 0.00 42.56 4.30
1816 1951 1.453762 GACGGGTGATACTCCCTCCG 61.454 65.000 0.00 0.00 42.56 4.63
1817 1952 1.455217 CGGGTGATACTCCCTCCGT 60.455 63.158 0.00 0.00 42.56 4.69
1818 1953 1.041447 CGGGTGATACTCCCTCCGTT 61.041 60.000 0.00 0.00 42.56 4.44
1819 1954 0.751452 GGGTGATACTCCCTCCGTTC 59.249 60.000 0.00 0.00 41.58 3.95
1820 1955 0.751452 GGTGATACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 0.00 3.62
1821 1956 1.481871 GTGATACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
1822 1957 1.829222 GTGATACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
1823 1958 2.235402 GTGATACTCCCTCCGTTCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
1824 1959 2.907696 TGATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
1825 1960 3.521937 TGATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
1826 1961 4.717778 TGATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
1827 1962 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1828 1963 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1829 1964 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1830 1965 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1831 1966 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1832 1967 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1833 1968 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1834 1969 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1835 1970 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1836 1971 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1837 1972 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1838 1973 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1839 1974 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1840 1975 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1841 1976 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
1842 1977 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
1843 1978 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
1844 1979 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
1845 1980 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
1850 1985 7.750947 AGATGACCCAACTTTATACTAACCT 57.249 36.000 0.00 0.00 0.00 3.50
1851 1986 8.159229 AGATGACCCAACTTTATACTAACCTT 57.841 34.615 0.00 0.00 0.00 3.50
1852 1987 9.275572 AGATGACCCAACTTTATACTAACCTTA 57.724 33.333 0.00 0.00 0.00 2.69
1853 1988 9.543783 GATGACCCAACTTTATACTAACCTTAG 57.456 37.037 0.00 0.00 36.82 2.18
1854 1989 8.439964 TGACCCAACTTTATACTAACCTTAGT 57.560 34.615 3.29 3.29 45.39 2.24
1855 1990 9.545928 TGACCCAACTTTATACTAACCTTAGTA 57.454 33.333 7.27 7.27 46.74 1.82
1856 1991 9.809096 GACCCAACTTTATACTAACCTTAGTAC 57.191 37.037 7.01 0.00 45.86 2.73
1857 1992 9.325248 ACCCAACTTTATACTAACCTTAGTACA 57.675 33.333 7.01 0.00 45.86 2.90
1866 2001 6.505048 ACTAACCTTAGTACAAAGTTGGGT 57.495 37.500 0.00 0.00 41.92 4.51
1867 2002 6.528321 ACTAACCTTAGTACAAAGTTGGGTC 58.472 40.000 0.00 0.00 41.92 4.46
1868 2003 5.376756 AACCTTAGTACAAAGTTGGGTCA 57.623 39.130 0.00 0.00 0.00 4.02
1869 2004 5.578157 ACCTTAGTACAAAGTTGGGTCAT 57.422 39.130 0.00 0.00 0.00 3.06
1870 2005 5.557866 ACCTTAGTACAAAGTTGGGTCATC 58.442 41.667 0.00 0.00 0.00 2.92
1871 2006 5.309806 ACCTTAGTACAAAGTTGGGTCATCT 59.690 40.000 0.00 0.00 0.00 2.90
1872 2007 6.499350 ACCTTAGTACAAAGTTGGGTCATCTA 59.501 38.462 0.00 0.00 0.00 1.98
1873 2008 7.182206 ACCTTAGTACAAAGTTGGGTCATCTAT 59.818 37.037 0.00 0.00 0.00 1.98
1874 2009 8.047310 CCTTAGTACAAAGTTGGGTCATCTATT 58.953 37.037 0.00 0.00 0.00 1.73
1875 2010 9.449719 CTTAGTACAAAGTTGGGTCATCTATTT 57.550 33.333 0.00 0.00 0.00 1.40
1876 2011 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1877 2012 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1878 2013 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
1879 2014 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
1880 2015 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
1881 2016 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
1882 2017 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
1883 2018 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
1884 2019 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
1885 2020 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
1886 2021 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
1887 2022 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
1888 2023 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
1889 2024 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
1890 2025 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
1891 2026 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
1892 2027 5.974108 TCTATTTTGAAACGGAGGGAGTAG 58.026 41.667 0.00 0.00 0.00 2.57
1893 2028 4.635699 ATTTTGAAACGGAGGGAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
1894 2029 4.426736 TTTTGAAACGGAGGGAGTAGTT 57.573 40.909 0.00 0.00 0.00 2.24
1895 2030 3.672767 TTGAAACGGAGGGAGTAGTTC 57.327 47.619 0.00 0.00 0.00 3.01
1896 2031 2.600790 TGAAACGGAGGGAGTAGTTCA 58.399 47.619 0.00 0.00 0.00 3.18
1897 2032 3.170717 TGAAACGGAGGGAGTAGTTCAT 58.829 45.455 0.00 0.00 0.00 2.57
1898 2033 4.346730 TGAAACGGAGGGAGTAGTTCATA 58.653 43.478 0.00 0.00 0.00 2.15
1899 2034 4.960469 TGAAACGGAGGGAGTAGTTCATAT 59.040 41.667 0.00 0.00 0.00 1.78
1900 2035 4.939052 AACGGAGGGAGTAGTTCATATG 57.061 45.455 0.00 0.00 0.00 1.78
1910 2045 8.826765 AGGGAGTAGTTCATATGGTTAATATGG 58.173 37.037 2.13 0.00 45.71 2.74
1921 2056 9.130661 CATATGGTTAATATGGAAGGTTGTTCA 57.869 33.333 0.00 0.00 43.09 3.18
1941 2076 8.925788 TGTTCATTGTTTTGAAAAGAAAAACG 57.074 26.923 16.64 4.93 46.01 3.60
1969 2104 7.781056 AGTTGTCCATGTTTTGAAAAGTATGT 58.219 30.769 11.48 0.00 0.00 2.29
1970 2105 7.706179 AGTTGTCCATGTTTTGAAAAGTATGTG 59.294 33.333 11.48 5.94 0.00 3.21
1977 2112 9.729023 CATGTTTTGAAAAGTATGTGTGACTTA 57.271 29.630 0.00 0.00 36.10 2.24
1999 2134 9.832445 ACTTATAAATCGTAATGATGTGGTTCT 57.168 29.630 0.00 0.00 37.39 3.01
2001 2136 5.818136 AAATCGTAATGATGTGGTTCTGG 57.182 39.130 0.00 0.00 37.39 3.86
2024 2159 6.326323 TGGTGCCATGATATTCTGAACTAGTA 59.674 38.462 0.00 0.00 0.00 1.82
2052 2187 8.621532 TCTTCATATGAGTATAATGTTTGCCC 57.378 34.615 5.39 0.00 0.00 5.36
2057 2192 5.036117 TGAGTATAATGTTTGCCCCTCTC 57.964 43.478 0.00 0.00 0.00 3.20
2069 2205 1.153549 CCCTCTCTTTTCGGCTCGG 60.154 63.158 0.00 0.00 0.00 4.63
2085 2223 2.500229 CTCGGGCTTTTGGTTGAACTA 58.500 47.619 0.00 0.00 0.00 2.24
2088 2226 2.621526 CGGGCTTTTGGTTGAACTAGTT 59.378 45.455 8.13 8.13 0.00 2.24
2089 2227 3.067601 CGGGCTTTTGGTTGAACTAGTTT 59.932 43.478 10.02 0.00 0.00 2.66
2094 2232 6.816640 GGCTTTTGGTTGAACTAGTTTTCTTT 59.183 34.615 10.02 0.00 0.00 2.52
2096 2234 9.361315 GCTTTTGGTTGAACTAGTTTTCTTTAA 57.639 29.630 10.02 0.00 0.00 1.52
2129 2267 0.179070 GTCAGCTGCTAAGGGTAGGC 60.179 60.000 9.47 0.00 0.00 3.93
2145 2283 1.141019 GGCGTGGATTGACGAGCTA 59.859 57.895 0.00 0.00 42.10 3.32
2149 2287 1.132453 CGTGGATTGACGAGCTACTCA 59.868 52.381 0.00 0.00 42.10 3.41
2177 2315 2.347630 GGCTTGGCCCGTTAAGTTT 58.652 52.632 0.00 0.00 44.06 2.66
2178 2316 0.038618 GGCTTGGCCCGTTAAGTTTG 60.039 55.000 0.00 0.00 44.06 2.93
2193 2334 7.412672 CCGTTAAGTTTGTACTCATTAAGGCTC 60.413 40.741 0.00 0.00 31.99 4.70
2196 2337 4.020485 AGTTTGTACTCATTAAGGCTCGGT 60.020 41.667 0.00 0.00 0.00 4.69
2197 2338 3.795623 TGTACTCATTAAGGCTCGGTC 57.204 47.619 0.00 0.00 0.00 4.79
2198 2339 2.429610 TGTACTCATTAAGGCTCGGTCC 59.570 50.000 0.00 0.00 0.00 4.46
2200 2341 2.119495 ACTCATTAAGGCTCGGTCCAT 58.881 47.619 0.00 0.00 0.00 3.41
2201 2342 2.505819 ACTCATTAAGGCTCGGTCCATT 59.494 45.455 0.00 0.00 0.00 3.16
2202 2343 3.709653 ACTCATTAAGGCTCGGTCCATTA 59.290 43.478 0.00 0.00 0.00 1.90
2203 2344 4.163458 ACTCATTAAGGCTCGGTCCATTAA 59.837 41.667 0.00 0.00 0.00 1.40
2204 2345 4.703897 TCATTAAGGCTCGGTCCATTAAG 58.296 43.478 0.00 0.00 0.00 1.85
2205 2346 2.614829 TAAGGCTCGGTCCATTAAGC 57.385 50.000 0.00 0.00 0.00 3.09
2206 2347 0.912486 AAGGCTCGGTCCATTAAGCT 59.088 50.000 0.00 0.00 35.12 3.74
2207 2348 0.466124 AGGCTCGGTCCATTAAGCTC 59.534 55.000 0.00 0.00 35.12 4.09
2208 2349 0.466124 GGCTCGGTCCATTAAGCTCT 59.534 55.000 0.00 0.00 35.12 4.09
2251 2392 7.688478 AAACTATGTTCGGTTTTGTTTAAGC 57.312 32.000 0.00 0.00 32.60 3.09
2252 2393 5.765176 ACTATGTTCGGTTTTGTTTAAGCC 58.235 37.500 0.00 0.00 34.02 4.35
2253 2394 3.439895 TGTTCGGTTTTGTTTAAGCCC 57.560 42.857 0.00 0.00 33.82 5.19
2274 2423 4.946157 CCCAAGCTCATTAAACTCATGAGT 59.054 41.667 22.89 22.89 46.54 3.41
2284 2433 4.992381 AAACTCATGAGTGCTCGTTAAC 57.008 40.909 28.52 0.00 41.58 2.01
2292 2441 3.566742 TGAGTGCTCGTTAACAGACTACA 59.433 43.478 6.39 0.00 0.00 2.74
2302 2451 8.165212 TCGTTAACAGACTACAATGATTTACG 57.835 34.615 6.39 0.00 0.00 3.18
2303 2452 7.274033 TCGTTAACAGACTACAATGATTTACGG 59.726 37.037 6.39 0.00 0.00 4.02
2308 2457 5.462398 CAGACTACAATGATTTACGGCCTAC 59.538 44.000 0.00 0.00 0.00 3.18
2309 2458 4.700700 ACTACAATGATTTACGGCCTACC 58.299 43.478 0.00 0.00 0.00 3.18
2310 2459 3.637911 ACAATGATTTACGGCCTACCA 57.362 42.857 0.00 0.00 34.57 3.25
2312 2461 3.199071 ACAATGATTTACGGCCTACCAGA 59.801 43.478 0.00 0.00 34.57 3.86
2314 2463 5.071250 ACAATGATTTACGGCCTACCAGATA 59.929 40.000 0.00 0.00 34.57 1.98
2321 2470 1.269831 CGGCCTACCAGATAAGAGTGC 60.270 57.143 0.00 0.00 34.57 4.40
2336 2485 1.336755 GAGTGCGGGTGTGATTTTTGT 59.663 47.619 0.00 0.00 0.00 2.83
2341 2490 2.380660 CGGGTGTGATTTTTGTGAACG 58.619 47.619 0.00 0.00 0.00 3.95
2366 2520 3.458044 TGGTGACTACAGGAGAGATGT 57.542 47.619 0.00 0.00 34.62 3.06
2371 2525 3.948473 TGACTACAGGAGAGATGTGCTAC 59.052 47.826 0.00 0.00 32.02 3.58
2375 2529 4.134379 ACAGGAGAGATGTGCTACATTG 57.866 45.455 3.76 0.95 39.27 2.82
2378 2532 4.569966 CAGGAGAGATGTGCTACATTGTTC 59.430 45.833 0.00 3.61 39.27 3.18
2382 2536 4.018960 AGAGATGTGCTACATTGTTCCCTT 60.019 41.667 0.00 0.00 39.27 3.95
2383 2537 4.265073 AGATGTGCTACATTGTTCCCTTC 58.735 43.478 0.00 0.00 39.27 3.46
2386 2540 4.575885 TGTGCTACATTGTTCCCTTCTAC 58.424 43.478 0.00 0.00 0.00 2.59
2399 2553 2.376109 CCTTCTACGAGCTAGGTTGGA 58.624 52.381 13.68 3.90 0.00 3.53
2402 2556 2.584236 TCTACGAGCTAGGTTGGATCC 58.416 52.381 13.68 4.20 0.00 3.36
2405 2559 2.958818 ACGAGCTAGGTTGGATCCATA 58.041 47.619 17.06 4.17 0.00 2.74
2407 2561 3.322254 ACGAGCTAGGTTGGATCCATAAG 59.678 47.826 17.06 11.51 0.00 1.73
2411 2565 6.071334 CGAGCTAGGTTGGATCCATAAGATTA 60.071 42.308 17.06 0.00 34.42 1.75
2430 2584 8.443953 AAGATTAAATAGATGAGTTGAGGTGC 57.556 34.615 0.00 0.00 0.00 5.01
2439 2593 2.807967 TGAGTTGAGGTGCGATGAAAAG 59.192 45.455 0.00 0.00 0.00 2.27
2440 2594 2.154462 AGTTGAGGTGCGATGAAAAGG 58.846 47.619 0.00 0.00 0.00 3.11
2441 2595 2.151202 GTTGAGGTGCGATGAAAAGGA 58.849 47.619 0.00 0.00 0.00 3.36
2443 2597 2.358957 TGAGGTGCGATGAAAAGGATG 58.641 47.619 0.00 0.00 0.00 3.51
2472 2626 9.982651 ACGTAAGATAAGAATATGTGTTATGCT 57.017 29.630 0.00 0.00 43.62 3.79
2489 2643 2.348578 GCTTTACTAGCGCGCTTAAC 57.651 50.000 41.04 16.98 40.71 2.01
2490 2644 1.657094 GCTTTACTAGCGCGCTTAACA 59.343 47.619 41.04 20.87 40.71 2.41
2491 2645 2.093152 GCTTTACTAGCGCGCTTAACAA 59.907 45.455 41.04 24.27 40.71 2.83
2492 2646 3.781280 GCTTTACTAGCGCGCTTAACAAG 60.781 47.826 41.04 31.54 40.71 3.16
2506 2660 5.438761 CTTAACAAGCTACTTGGCAAACT 57.561 39.130 11.69 0.00 44.81 2.66
2507 2661 3.990318 AACAAGCTACTTGGCAAACTC 57.010 42.857 11.69 0.00 44.81 3.01
2508 2662 2.930950 ACAAGCTACTTGGCAAACTCA 58.069 42.857 11.69 0.00 44.81 3.41
2509 2663 3.490348 ACAAGCTACTTGGCAAACTCAT 58.510 40.909 11.69 0.00 44.81 2.90
2510 2664 3.891366 ACAAGCTACTTGGCAAACTCATT 59.109 39.130 11.69 0.00 44.81 2.57
2511 2665 5.070001 ACAAGCTACTTGGCAAACTCATTA 58.930 37.500 11.69 0.00 44.81 1.90
2512 2666 5.711976 ACAAGCTACTTGGCAAACTCATTAT 59.288 36.000 11.69 0.00 44.81 1.28
2513 2667 6.127897 ACAAGCTACTTGGCAAACTCATTATC 60.128 38.462 11.69 0.00 44.81 1.75
2514 2668 5.749462 AGCTACTTGGCAAACTCATTATCT 58.251 37.500 0.00 0.00 34.17 1.98
2515 2669 5.819901 AGCTACTTGGCAAACTCATTATCTC 59.180 40.000 0.00 0.00 34.17 2.75
2516 2670 5.586243 GCTACTTGGCAAACTCATTATCTCA 59.414 40.000 0.00 0.00 0.00 3.27
2517 2671 6.261826 GCTACTTGGCAAACTCATTATCTCAT 59.738 38.462 0.00 0.00 0.00 2.90
2518 2672 7.201767 GCTACTTGGCAAACTCATTATCTCATT 60.202 37.037 0.00 0.00 0.00 2.57
2519 2673 7.093322 ACTTGGCAAACTCATTATCTCATTC 57.907 36.000 0.00 0.00 0.00 2.67
2520 2674 5.739752 TGGCAAACTCATTATCTCATTCG 57.260 39.130 0.00 0.00 0.00 3.34
2521 2675 5.185454 TGGCAAACTCATTATCTCATTCGT 58.815 37.500 0.00 0.00 0.00 3.85
2522 2676 5.647658 TGGCAAACTCATTATCTCATTCGTT 59.352 36.000 0.00 0.00 0.00 3.85
2523 2677 6.821160 TGGCAAACTCATTATCTCATTCGTTA 59.179 34.615 0.00 0.00 0.00 3.18
2524 2678 7.335673 TGGCAAACTCATTATCTCATTCGTTAA 59.664 33.333 0.00 0.00 0.00 2.01
2525 2679 7.852945 GGCAAACTCATTATCTCATTCGTTAAG 59.147 37.037 0.00 0.00 0.00 1.85
2526 2680 7.374491 GCAAACTCATTATCTCATTCGTTAAGC 59.626 37.037 0.00 0.00 0.00 3.09
2527 2681 8.390354 CAAACTCATTATCTCATTCGTTAAGCA 58.610 33.333 0.00 0.00 0.00 3.91
2528 2682 7.470289 ACTCATTATCTCATTCGTTAAGCAC 57.530 36.000 0.00 0.00 0.00 4.40
2529 2683 7.041721 ACTCATTATCTCATTCGTTAAGCACA 58.958 34.615 0.00 0.00 0.00 4.57
2530 2684 7.712639 ACTCATTATCTCATTCGTTAAGCACAT 59.287 33.333 0.00 0.00 0.00 3.21
2531 2685 8.437360 TCATTATCTCATTCGTTAAGCACATT 57.563 30.769 0.00 0.00 0.00 2.71
2532 2686 9.541143 TCATTATCTCATTCGTTAAGCACATTA 57.459 29.630 0.00 0.00 0.00 1.90
2535 2689 7.849804 ATCTCATTCGTTAAGCACATTAAGT 57.150 32.000 0.00 0.00 34.01 2.24
2536 2690 7.667043 TCTCATTCGTTAAGCACATTAAGTT 57.333 32.000 0.00 0.00 34.01 2.66
2537 2691 8.094798 TCTCATTCGTTAAGCACATTAAGTTT 57.905 30.769 0.00 0.00 34.01 2.66
2538 2692 9.210329 TCTCATTCGTTAAGCACATTAAGTTTA 57.790 29.630 0.00 0.00 34.01 2.01
2539 2693 9.820229 CTCATTCGTTAAGCACATTAAGTTTAA 57.180 29.630 0.00 0.00 34.01 1.52
2540 2694 9.601971 TCATTCGTTAAGCACATTAAGTTTAAC 57.398 29.630 0.00 0.00 38.49 2.01
2541 2695 9.388346 CATTCGTTAAGCACATTAAGTTTAACA 57.612 29.630 11.32 0.00 40.46 2.41
2542 2696 9.953697 ATTCGTTAAGCACATTAAGTTTAACAA 57.046 25.926 11.32 6.69 40.46 2.83
2543 2697 8.996988 TCGTTAAGCACATTAAGTTTAACAAG 57.003 30.769 11.32 0.11 40.46 3.16
2544 2698 7.588488 TCGTTAAGCACATTAAGTTTAACAAGC 59.412 33.333 11.32 0.00 40.46 4.01
2545 2699 7.589954 CGTTAAGCACATTAAGTTTAACAAGCT 59.410 33.333 11.32 0.00 40.46 3.74
2546 2700 9.887406 GTTAAGCACATTAAGTTTAACAAGCTA 57.113 29.630 0.00 0.00 40.29 3.32
2548 2702 8.797266 AAGCACATTAAGTTTAACAAGCTAAC 57.203 30.769 0.00 0.00 30.80 2.34
2549 2703 7.936584 AGCACATTAAGTTTAACAAGCTAACA 58.063 30.769 0.00 0.00 29.88 2.41
2550 2704 8.576442 AGCACATTAAGTTTAACAAGCTAACAT 58.424 29.630 0.00 0.00 29.88 2.71
2551 2705 9.191995 GCACATTAAGTTTAACAAGCTAACATT 57.808 29.630 0.00 0.00 0.00 2.71
2558 2712 9.816354 AAGTTTAACAAGCTAACATTTGTGATT 57.184 25.926 0.00 0.00 37.57 2.57
2559 2713 9.248291 AGTTTAACAAGCTAACATTTGTGATTG 57.752 29.630 0.00 0.00 37.57 2.67
2560 2714 8.487176 GTTTAACAAGCTAACATTTGTGATTGG 58.513 33.333 0.00 0.00 37.57 3.16
2561 2715 4.559153 ACAAGCTAACATTTGTGATTGGC 58.441 39.130 0.00 0.00 36.26 4.52
2562 2716 4.281688 ACAAGCTAACATTTGTGATTGGCT 59.718 37.500 0.00 0.00 36.26 4.75
2563 2717 5.221501 ACAAGCTAACATTTGTGATTGGCTT 60.222 36.000 1.51 1.51 36.26 4.35
2564 2718 5.473066 AGCTAACATTTGTGATTGGCTTT 57.527 34.783 0.00 0.00 0.00 3.51
2565 2719 5.232463 AGCTAACATTTGTGATTGGCTTTG 58.768 37.500 0.00 0.00 0.00 2.77
2566 2720 4.990426 GCTAACATTTGTGATTGGCTTTGT 59.010 37.500 0.00 0.00 0.00 2.83
2567 2721 5.466393 GCTAACATTTGTGATTGGCTTTGTT 59.534 36.000 0.00 0.00 0.00 2.83
2568 2722 6.018016 GCTAACATTTGTGATTGGCTTTGTTT 60.018 34.615 0.00 0.00 0.00 2.83
2569 2723 7.170658 GCTAACATTTGTGATTGGCTTTGTTTA 59.829 33.333 0.00 0.00 0.00 2.01
2570 2724 9.206870 CTAACATTTGTGATTGGCTTTGTTTAT 57.793 29.630 0.00 0.00 0.00 1.40
2571 2725 8.449251 AACATTTGTGATTGGCTTTGTTTATT 57.551 26.923 0.00 0.00 0.00 1.40
2572 2726 9.553064 AACATTTGTGATTGGCTTTGTTTATTA 57.447 25.926 0.00 0.00 0.00 0.98
2573 2727 9.553064 ACATTTGTGATTGGCTTTGTTTATTAA 57.447 25.926 0.00 0.00 0.00 1.40
2575 2729 9.995003 ATTTGTGATTGGCTTTGTTTATTAAGA 57.005 25.926 0.00 0.00 0.00 2.10
2576 2730 9.474920 TTTGTGATTGGCTTTGTTTATTAAGAG 57.525 29.630 0.00 0.00 0.00 2.85
2577 2731 8.402798 TGTGATTGGCTTTGTTTATTAAGAGA 57.597 30.769 0.00 0.00 0.00 3.10
2578 2732 8.296713 TGTGATTGGCTTTGTTTATTAAGAGAC 58.703 33.333 0.00 0.00 0.00 3.36
2579 2733 7.481798 GTGATTGGCTTTGTTTATTAAGAGACG 59.518 37.037 0.00 0.00 0.00 4.18
2580 2734 7.389330 TGATTGGCTTTGTTTATTAAGAGACGA 59.611 33.333 0.00 0.00 0.00 4.20
2581 2735 6.721571 TGGCTTTGTTTATTAAGAGACGAG 57.278 37.500 0.00 0.00 0.00 4.18
2582 2736 5.121768 TGGCTTTGTTTATTAAGAGACGAGC 59.878 40.000 9.19 9.19 0.00 5.03
2583 2737 5.248834 GCTTTGTTTATTAAGAGACGAGCG 58.751 41.667 0.00 0.00 0.00 5.03
2584 2738 5.061808 GCTTTGTTTATTAAGAGACGAGCGA 59.938 40.000 0.00 0.00 0.00 4.93
2585 2739 6.385537 TTTGTTTATTAAGAGACGAGCGAC 57.614 37.500 0.00 0.00 0.00 5.19
2587 2741 4.142838 TGTTTATTAAGAGACGAGCGACGA 60.143 41.667 12.62 0.00 45.77 4.20
2588 2742 2.741122 ATTAAGAGACGAGCGACGAG 57.259 50.000 12.62 0.00 45.77 4.18
2589 2743 0.096628 TTAAGAGACGAGCGACGAGC 59.903 55.000 12.62 0.00 45.77 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.300971 ATGCCAGTGTAGCAAGCGTG 61.301 55.000 0.00 0.00 44.83 5.34
11 12 1.003355 ATGCCAGTGTAGCAAGCGT 60.003 52.632 0.00 0.00 44.83 5.07
12 13 1.020861 TCATGCCAGTGTAGCAAGCG 61.021 55.000 0.00 0.00 44.83 4.68
13 14 1.135575 GTTCATGCCAGTGTAGCAAGC 60.136 52.381 0.00 0.00 44.83 4.01
14 15 2.153645 TGTTCATGCCAGTGTAGCAAG 58.846 47.619 0.00 0.00 44.83 4.01
15 16 2.268762 TGTTCATGCCAGTGTAGCAA 57.731 45.000 0.00 0.00 44.83 3.91
16 17 2.026915 AGATGTTCATGCCAGTGTAGCA 60.027 45.455 0.00 0.00 45.94 3.49
17 18 2.636830 AGATGTTCATGCCAGTGTAGC 58.363 47.619 0.00 0.00 0.00 3.58
18 19 6.741992 TTTTAGATGTTCATGCCAGTGTAG 57.258 37.500 0.00 0.00 0.00 2.74
159 160 7.234988 GCCTCCCATATAAAAAGTACTCCTCTA 59.765 40.741 0.00 0.00 0.00 2.43
282 287 8.771766 GGATCATATTTTACTTAACGGAAGGAC 58.228 37.037 0.00 0.00 39.74 3.85
283 288 7.935210 GGGATCATATTTTACTTAACGGAAGGA 59.065 37.037 0.00 0.00 39.74 3.36
323 328 9.653287 TCAACTTTACTTAATACATGGTGAGAG 57.347 33.333 0.00 0.00 0.00 3.20
360 365 9.595823 AGTGTGATGGTTATGTGTTAGTTATAC 57.404 33.333 0.00 0.00 0.00 1.47
363 368 8.911918 AAAGTGTGATGGTTATGTGTTAGTTA 57.088 30.769 0.00 0.00 0.00 2.24
424 429 7.568199 AGAGCTGGTTTGCGTATATTTTATT 57.432 32.000 0.00 0.00 38.13 1.40
435 440 2.866762 GGTCTAATAGAGCTGGTTTGCG 59.133 50.000 11.83 0.00 39.50 4.85
448 453 6.366340 TGAACAACCAAAACAGGGTCTAATA 58.634 36.000 0.00 0.00 37.77 0.98
502 507 5.800296 TCAGTGATACCCGAGAAAATTTGA 58.200 37.500 0.00 0.00 0.00 2.69
516 521 5.581085 AGCATACCGAAAACTTCAGTGATAC 59.419 40.000 0.00 0.00 0.00 2.24
549 554 2.273538 TTTGGGGTCGGAATTTTCGA 57.726 45.000 0.00 0.00 0.00 3.71
572 577 0.250597 GGTGCCGTTTCAAGTAGGGT 60.251 55.000 0.00 0.00 0.00 4.34
594 599 2.698797 TCTAATCCTTTCTAGCCACCGG 59.301 50.000 0.00 0.00 0.00 5.28
595 600 4.039245 TGATCTAATCCTTTCTAGCCACCG 59.961 45.833 0.00 0.00 0.00 4.94
637 673 2.412089 CGAACTTTTGGATCAGACGACC 59.588 50.000 0.00 0.00 0.00 4.79
706 742 0.885879 ATGTTACGCGTGAGGTCTCA 59.114 50.000 24.59 7.95 37.24 3.27
708 744 2.066262 CAAATGTTACGCGTGAGGTCT 58.934 47.619 24.59 0.00 0.00 3.85
709 745 2.063266 TCAAATGTTACGCGTGAGGTC 58.937 47.619 24.59 2.11 0.00 3.85
710 746 2.066262 CTCAAATGTTACGCGTGAGGT 58.934 47.619 24.59 1.58 33.57 3.85
719 767 1.729149 GCTGCGTGGCTCAAATGTTAC 60.729 52.381 0.00 0.00 0.00 2.50
836 884 3.741476 GCTGGCTTGGTTGCGGAG 61.741 66.667 0.00 0.00 0.00 4.63
857 905 4.154347 GGTCGAGAGGCTGGCTGG 62.154 72.222 9.06 0.00 34.89 4.85
892 940 3.349022 AGGTAGAGAAAGGACACGAGAG 58.651 50.000 0.00 0.00 0.00 3.20
944 994 2.377531 GTTTGGTAAGGGGGAGGAAGAA 59.622 50.000 0.00 0.00 0.00 2.52
956 1008 3.251571 GCACTACGGAGAGTTTGGTAAG 58.748 50.000 0.00 0.00 0.00 2.34
957 1009 2.028748 GGCACTACGGAGAGTTTGGTAA 60.029 50.000 0.00 0.00 0.00 2.85
973 1025 1.071699 ACACTGATTAACCACGGCACT 59.928 47.619 0.00 0.00 0.00 4.40
1005 1057 1.452651 ATGAAGCATGGAGGCCACG 60.453 57.895 5.01 0.00 35.80 4.94
1026 1078 3.363844 GACTGCCAGGAGAGACGGC 62.364 68.421 0.00 0.00 46.43 5.68
1054 1106 1.817099 CAGCATTCCTCTGTCCGCC 60.817 63.158 0.00 0.00 0.00 6.13
1110 1162 1.871126 GAAGCTTGGCTGCCTGAACC 61.871 60.000 21.03 3.92 39.62 3.62
1122 1174 4.567716 ACTTACTCCGGCAGGAAGCTTG 62.568 54.545 19.82 0.00 46.35 4.01
1187 1259 5.523438 AGATGTTAAGATCTCGGAGAACC 57.477 43.478 12.40 7.19 34.09 3.62
1188 1260 7.332182 ACAAAAGATGTTAAGATCTCGGAGAAC 59.668 37.037 14.94 9.58 40.06 3.01
1189 1261 7.331934 CACAAAAGATGTTAAGATCTCGGAGAA 59.668 37.037 14.94 0.00 41.46 2.87
1190 1262 6.813649 CACAAAAGATGTTAAGATCTCGGAGA 59.186 38.462 14.94 10.62 41.46 3.71
1191 1263 6.456181 GCACAAAAGATGTTAAGATCTCGGAG 60.456 42.308 14.94 8.59 41.46 4.63
1192 1264 5.351465 GCACAAAAGATGTTAAGATCTCGGA 59.649 40.000 14.94 0.00 41.46 4.55
1193 1265 5.352569 AGCACAAAAGATGTTAAGATCTCGG 59.647 40.000 14.94 10.10 41.46 4.63
1194 1266 6.414408 AGCACAAAAGATGTTAAGATCTCG 57.586 37.500 14.94 9.56 41.46 4.04
1195 1267 7.810658 TCAAGCACAAAAGATGTTAAGATCTC 58.189 34.615 14.94 2.66 41.46 2.75
1196 1268 7.750229 TCAAGCACAAAAGATGTTAAGATCT 57.250 32.000 9.25 9.25 41.46 2.75
1197 1269 8.857216 CAATCAAGCACAAAAGATGTTAAGATC 58.143 33.333 4.44 4.44 41.46 2.75
1205 1277 4.446385 CACACCAATCAAGCACAAAAGATG 59.554 41.667 0.00 0.00 0.00 2.90
1211 1283 3.814625 TCTACACACCAATCAAGCACAA 58.185 40.909 0.00 0.00 0.00 3.33
1213 1285 3.403038 ACTCTACACACCAATCAAGCAC 58.597 45.455 0.00 0.00 0.00 4.40
1216 1292 5.406780 GTCTGAACTCTACACACCAATCAAG 59.593 44.000 0.00 0.00 0.00 3.02
1223 1299 3.728076 TGTGTCTGAACTCTACACACC 57.272 47.619 11.94 0.00 46.25 4.16
1253 1346 6.260936 CCTGTCATGAACACTAAAGTTTCAGT 59.739 38.462 0.00 0.00 32.75 3.41
1264 1357 1.349026 CCTGGACCTGTCATGAACACT 59.651 52.381 0.00 0.00 33.24 3.55
1270 1363 1.377725 GGCACCTGGACCTGTCATG 60.378 63.158 0.00 0.00 0.00 3.07
1271 1364 1.426251 TTGGCACCTGGACCTGTCAT 61.426 55.000 0.00 0.00 0.00 3.06
1273 1366 0.890996 CTTTGGCACCTGGACCTGTC 60.891 60.000 0.00 0.00 0.00 3.51
1274 1367 1.151450 CTTTGGCACCTGGACCTGT 59.849 57.895 0.00 0.00 0.00 4.00
1291 1388 4.269523 TCAGCTTGGGTTGCGCCT 62.270 61.111 4.18 0.00 37.43 5.52
1408 1505 3.245284 CGCGATTGAACGATTGGTAGATT 59.755 43.478 0.00 0.00 35.09 2.40
1414 1511 2.430956 CTTTCGCGATTGAACGATTGG 58.569 47.619 10.88 0.00 38.25 3.16
1418 1517 0.162933 GTGCTTTCGCGATTGAACGA 59.837 50.000 10.88 0.00 39.65 3.85
1448 1547 9.563898 AATGCATATATACAATGAAGCAAATCG 57.436 29.630 0.00 0.00 34.15 3.34
1510 1610 8.704849 TTGTTCAATATCTGGAAGGAAGAAAA 57.295 30.769 0.00 0.00 0.00 2.29
1514 1614 6.660949 ACCTTTGTTCAATATCTGGAAGGAAG 59.339 38.462 5.87 0.00 36.71 3.46
1587 1687 2.180276 GGAGGGAGAGCAGACTACAAA 58.820 52.381 0.00 0.00 0.00 2.83
1617 1719 7.615403 TCATGTGGCTCTTAGTATCAATATCC 58.385 38.462 0.00 0.00 0.00 2.59
1621 1723 7.284034 CCTTTTCATGTGGCTCTTAGTATCAAT 59.716 37.037 0.00 0.00 0.00 2.57
1627 1729 4.373156 ACCTTTTCATGTGGCTCTTAGT 57.627 40.909 0.00 0.00 0.00 2.24
1744 1879 2.490115 CTCTCCCTATCATAGCGGTGAC 59.510 54.545 0.00 0.00 0.00 3.67
1746 1881 2.230025 CACTCTCCCTATCATAGCGGTG 59.770 54.545 0.00 0.00 0.00 4.94
1750 1885 5.244851 TGAACATCACTCTCCCTATCATAGC 59.755 44.000 0.00 0.00 0.00 2.97
1751 1886 6.907853 TGAACATCACTCTCCCTATCATAG 57.092 41.667 0.00 0.00 0.00 2.23
1752 1887 6.042093 GGTTGAACATCACTCTCCCTATCATA 59.958 42.308 0.00 0.00 0.00 2.15
1753 1888 5.163258 GGTTGAACATCACTCTCCCTATCAT 60.163 44.000 0.00 0.00 0.00 2.45
1758 1893 1.630878 GGGTTGAACATCACTCTCCCT 59.369 52.381 0.00 0.00 0.00 4.20
1760 1895 2.675317 CGAGGGTTGAACATCACTCTCC 60.675 54.545 11.62 0.00 28.05 3.71
1761 1896 2.231478 TCGAGGGTTGAACATCACTCTC 59.769 50.000 11.62 5.40 0.00 3.20
1770 1905 4.201822 GCAGAATATTGTCGAGGGTTGAAC 60.202 45.833 0.00 0.00 0.00 3.18
1777 1912 4.047822 GTCTCAGCAGAATATTGTCGAGG 58.952 47.826 0.00 0.00 0.00 4.63
1808 1943 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1810 1945 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1811 1946 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1812 1947 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1814 1949 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1816 1951 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1817 1952 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
1818 1953 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
1819 1954 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
1824 1959 9.448587 AGGTTAGTATAAAGTTGGGTCATCTAT 57.551 33.333 0.00 0.00 0.00 1.98
1825 1960 8.849543 AGGTTAGTATAAAGTTGGGTCATCTA 57.150 34.615 0.00 0.00 0.00 1.98
1826 1961 7.750947 AGGTTAGTATAAAGTTGGGTCATCT 57.249 36.000 0.00 0.00 0.00 2.90
1827 1962 9.543783 CTAAGGTTAGTATAAAGTTGGGTCATC 57.456 37.037 0.00 0.00 0.00 2.92
1828 1963 9.054580 ACTAAGGTTAGTATAAAGTTGGGTCAT 57.945 33.333 0.32 0.00 41.92 3.06
1829 1964 8.439964 ACTAAGGTTAGTATAAAGTTGGGTCA 57.560 34.615 0.32 0.00 41.92 4.02
1830 1965 9.809096 GTACTAAGGTTAGTATAAAGTTGGGTC 57.191 37.037 11.78 0.00 45.11 4.46
1831 1966 9.325248 TGTACTAAGGTTAGTATAAAGTTGGGT 57.675 33.333 11.78 0.00 45.11 4.51
1840 1975 9.325248 ACCCAACTTTGTACTAAGGTTAGTATA 57.675 33.333 19.08 7.40 45.11 1.47
1841 1976 8.211030 ACCCAACTTTGTACTAAGGTTAGTAT 57.789 34.615 19.08 0.00 45.11 2.12
1842 1977 7.289782 TGACCCAACTTTGTACTAAGGTTAGTA 59.710 37.037 19.08 5.64 43.36 1.82
1843 1978 6.100134 TGACCCAACTTTGTACTAAGGTTAGT 59.900 38.462 19.08 12.61 45.39 2.24
1844 1979 6.527423 TGACCCAACTTTGTACTAAGGTTAG 58.473 40.000 19.08 9.91 36.82 2.34
1845 1980 6.497624 TGACCCAACTTTGTACTAAGGTTA 57.502 37.500 19.08 4.72 0.00 2.85
1846 1981 5.376756 TGACCCAACTTTGTACTAAGGTT 57.623 39.130 19.08 9.89 0.00 3.50
1847 1982 5.309806 AGATGACCCAACTTTGTACTAAGGT 59.690 40.000 19.08 11.48 0.00 3.50
1848 1983 5.805728 AGATGACCCAACTTTGTACTAAGG 58.194 41.667 19.08 6.74 0.00 2.69
1849 1984 9.449719 AAATAGATGACCCAACTTTGTACTAAG 57.550 33.333 14.42 14.42 0.00 2.18
1850 1985 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1851 1986 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1852 1987 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
1853 1988 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
1854 1989 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
1855 1990 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
1856 1991 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
1857 1992 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
1858 1993 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
1859 1994 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
1860 1995 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
1861 1996 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
1862 1997 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
1863 1998 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
1864 1999 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
1865 2000 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
1866 2001 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
1867 2002 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
1868 2003 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
1869 2004 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
1870 2005 5.731591 ACTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
1871 2006 5.750352 ACTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
1872 2007 4.635699 ACTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
1873 2008 4.141665 TGAACTACTCCCTCCGTTTCAAAA 60.142 41.667 0.00 0.00 0.00 2.44
1874 2009 3.388676 TGAACTACTCCCTCCGTTTCAAA 59.611 43.478 0.00 0.00 0.00 2.69
1875 2010 2.967201 TGAACTACTCCCTCCGTTTCAA 59.033 45.455 0.00 0.00 0.00 2.69
1876 2011 2.600790 TGAACTACTCCCTCCGTTTCA 58.399 47.619 0.00 0.00 0.00 2.69
1877 2012 3.889520 ATGAACTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
1878 2013 4.101119 CCATATGAACTACTCCCTCCGTTT 59.899 45.833 3.65 0.00 0.00 3.60
1879 2014 3.641906 CCATATGAACTACTCCCTCCGTT 59.358 47.826 3.65 0.00 0.00 4.44
1880 2015 3.231818 CCATATGAACTACTCCCTCCGT 58.768 50.000 3.65 0.00 0.00 4.69
1881 2016 3.231818 ACCATATGAACTACTCCCTCCG 58.768 50.000 3.65 0.00 0.00 4.63
1882 2017 6.742559 TTAACCATATGAACTACTCCCTCC 57.257 41.667 3.65 0.00 0.00 4.30
1883 2018 9.877178 CATATTAACCATATGAACTACTCCCTC 57.123 37.037 3.65 0.00 45.64 4.30
1884 2019 8.826765 CCATATTAACCATATGAACTACTCCCT 58.173 37.037 3.65 0.00 45.64 4.20
1885 2020 8.822805 TCCATATTAACCATATGAACTACTCCC 58.177 37.037 3.65 0.00 45.64 4.30
1891 2026 9.354673 CAACCTTCCATATTAACCATATGAACT 57.645 33.333 3.65 0.00 45.64 3.01
1892 2027 9.131791 ACAACCTTCCATATTAACCATATGAAC 57.868 33.333 3.65 0.00 45.64 3.18
1893 2028 9.707957 AACAACCTTCCATATTAACCATATGAA 57.292 29.630 3.65 0.00 45.64 2.57
1894 2029 9.349713 GAACAACCTTCCATATTAACCATATGA 57.650 33.333 3.65 0.00 45.64 2.15
1895 2030 9.130661 TGAACAACCTTCCATATTAACCATATG 57.869 33.333 0.00 0.00 43.29 1.78
1896 2031 9.881773 ATGAACAACCTTCCATATTAACCATAT 57.118 29.630 0.00 0.00 0.00 1.78
1897 2032 9.707957 AATGAACAACCTTCCATATTAACCATA 57.292 29.630 0.00 0.00 0.00 2.74
1898 2033 8.477256 CAATGAACAACCTTCCATATTAACCAT 58.523 33.333 0.00 0.00 0.00 3.55
1899 2034 7.453126 ACAATGAACAACCTTCCATATTAACCA 59.547 33.333 0.00 0.00 0.00 3.67
1900 2035 7.836842 ACAATGAACAACCTTCCATATTAACC 58.163 34.615 0.00 0.00 0.00 2.85
1910 2045 8.250538 TCTTTTCAAAACAATGAACAACCTTC 57.749 30.769 0.00 0.00 38.95 3.46
1913 2048 9.670719 TTTTTCTTTTCAAAACAATGAACAACC 57.329 25.926 0.00 0.00 38.95 3.77
1921 2056 8.317891 ACTTCCGTTTTTCTTTTCAAAACAAT 57.682 26.923 8.54 0.00 42.07 2.71
1941 2076 6.106003 ACTTTTCAAAACATGGACAACTTCC 58.894 36.000 0.00 0.00 46.13 3.46
1969 2104 9.040939 CCACATCATTACGATTTATAAGTCACA 57.959 33.333 8.51 0.00 29.21 3.58
1970 2105 9.042008 ACCACATCATTACGATTTATAAGTCAC 57.958 33.333 8.51 0.00 29.21 3.67
1977 2112 7.012327 CACCAGAACCACATCATTACGATTTAT 59.988 37.037 0.00 0.00 29.21 1.40
1984 2119 2.423538 GGCACCAGAACCACATCATTAC 59.576 50.000 0.00 0.00 0.00 1.89
1985 2120 2.040947 TGGCACCAGAACCACATCATTA 59.959 45.455 0.00 0.00 0.00 1.90
1999 2134 4.508551 AGTTCAGAATATCATGGCACCA 57.491 40.909 0.00 0.00 0.00 4.17
2001 2136 8.839310 AATACTAGTTCAGAATATCATGGCAC 57.161 34.615 0.00 0.00 0.00 5.01
2030 2165 7.017551 AGAGGGGCAAACATTATACTCATATGA 59.982 37.037 5.07 5.07 0.00 2.15
2041 2176 3.756434 CGAAAAGAGAGGGGCAAACATTA 59.244 43.478 0.00 0.00 0.00 1.90
2049 2184 1.450491 GAGCCGAAAAGAGAGGGGC 60.450 63.158 0.00 0.00 44.07 5.80
2050 2185 1.153549 CGAGCCGAAAAGAGAGGGG 60.154 63.158 0.00 0.00 0.00 4.79
2052 2187 1.153549 CCCGAGCCGAAAAGAGAGG 60.154 63.158 0.00 0.00 0.00 3.69
2057 2192 0.387239 CAAAAGCCCGAGCCGAAAAG 60.387 55.000 0.00 0.00 41.25 2.27
2069 2205 5.902681 AGAAAACTAGTTCAACCAAAAGCC 58.097 37.500 8.95 0.00 0.00 4.35
2085 2223 8.870116 ACTTAGCCATCCAAATTAAAGAAAACT 58.130 29.630 0.00 0.00 0.00 2.66
2088 2226 8.415950 TGACTTAGCCATCCAAATTAAAGAAA 57.584 30.769 0.00 0.00 0.00 2.52
2089 2227 8.055279 CTGACTTAGCCATCCAAATTAAAGAA 57.945 34.615 0.00 0.00 0.00 2.52
2129 2267 1.132453 TGAGTAGCTCGTCAATCCACG 59.868 52.381 0.00 0.00 41.36 4.94
2145 2283 2.943199 GCCAAGCCTTAATGAGCTGAGT 60.943 50.000 0.00 0.00 39.87 3.41
2149 2287 3.197664 GGCCAAGCCTTAATGAGCT 57.802 52.632 0.00 0.00 46.69 4.09
2160 2298 0.671796 ACAAACTTAACGGGCCAAGC 59.328 50.000 4.39 0.00 0.00 4.01
2167 2305 6.370718 AGCCTTAATGAGTACAAACTTAACGG 59.629 38.462 0.00 0.37 35.56 4.44
2177 2315 2.429610 GGACCGAGCCTTAATGAGTACA 59.570 50.000 0.00 0.00 0.00 2.90
2178 2316 2.429610 TGGACCGAGCCTTAATGAGTAC 59.570 50.000 0.00 0.00 0.00 2.73
2225 2366 8.597227 GCTTAAACAAAACCGAACATAGTTTTT 58.403 29.630 0.00 0.00 42.06 1.94
2237 2378 2.131972 GCTTGGGCTTAAACAAAACCG 58.868 47.619 0.00 0.00 35.22 4.44
2250 2391 3.696051 TCATGAGTTTAATGAGCTTGGGC 59.304 43.478 0.00 0.00 39.06 5.36
2251 2392 5.496133 CTCATGAGTTTAATGAGCTTGGG 57.504 43.478 14.95 0.00 43.26 4.12
2260 2401 6.649141 TGTTAACGAGCACTCATGAGTTTAAT 59.351 34.615 25.84 11.64 40.20 1.40
2265 2406 3.255888 TCTGTTAACGAGCACTCATGAGT 59.744 43.478 22.89 22.89 43.61 3.41
2269 2410 3.944055 AGTCTGTTAACGAGCACTCAT 57.056 42.857 0.26 0.00 0.00 2.90
2274 2423 5.128992 TCATTGTAGTCTGTTAACGAGCA 57.871 39.130 0.26 0.00 0.00 4.26
2284 2433 4.442706 AGGCCGTAAATCATTGTAGTCTG 58.557 43.478 0.00 0.00 0.00 3.51
2292 2441 4.706842 ATCTGGTAGGCCGTAAATCATT 57.293 40.909 0.00 0.00 37.67 2.57
2302 2451 1.269831 CGCACTCTTATCTGGTAGGCC 60.270 57.143 0.00 0.00 0.00 5.19
2303 2452 1.269831 CCGCACTCTTATCTGGTAGGC 60.270 57.143 0.00 0.00 0.00 3.93
2308 2457 0.537188 ACACCCGCACTCTTATCTGG 59.463 55.000 0.00 0.00 0.00 3.86
2309 2458 1.204704 TCACACCCGCACTCTTATCTG 59.795 52.381 0.00 0.00 0.00 2.90
2310 2459 1.557099 TCACACCCGCACTCTTATCT 58.443 50.000 0.00 0.00 0.00 1.98
2312 2461 3.350219 AAATCACACCCGCACTCTTAT 57.650 42.857 0.00 0.00 0.00 1.73
2314 2463 1.981256 AAAATCACACCCGCACTCTT 58.019 45.000 0.00 0.00 0.00 2.85
2321 2470 2.032302 TCGTTCACAAAAATCACACCCG 59.968 45.455 0.00 0.00 0.00 5.28
2336 2485 3.056821 CCTGTAGTCACCATCTTCGTTCA 60.057 47.826 0.00 0.00 0.00 3.18
2341 2490 4.274147 TCTCTCCTGTAGTCACCATCTTC 58.726 47.826 0.00 0.00 0.00 2.87
2366 2520 3.512329 TCGTAGAAGGGAACAATGTAGCA 59.488 43.478 0.00 0.00 0.00 3.49
2371 2525 3.252974 AGCTCGTAGAAGGGAACAATG 57.747 47.619 0.00 0.00 34.09 2.82
2375 2529 2.377073 ACCTAGCTCGTAGAAGGGAAC 58.623 52.381 3.09 0.00 34.09 3.62
2378 2532 1.409427 CCAACCTAGCTCGTAGAAGGG 59.591 57.143 3.09 0.00 34.09 3.95
2382 2536 2.092049 TGGATCCAACCTAGCTCGTAGA 60.092 50.000 13.46 0.00 0.00 2.59
2383 2537 2.307768 TGGATCCAACCTAGCTCGTAG 58.692 52.381 13.46 0.00 0.00 3.51
2386 2540 3.574396 TCTTATGGATCCAACCTAGCTCG 59.426 47.826 20.67 0.32 0.00 5.03
2405 2559 7.225538 CGCACCTCAACTCATCTATTTAATCTT 59.774 37.037 0.00 0.00 0.00 2.40
2407 2561 6.701841 TCGCACCTCAACTCATCTATTTAATC 59.298 38.462 0.00 0.00 0.00 1.75
2411 2565 4.471904 TCGCACCTCAACTCATCTATTT 57.528 40.909 0.00 0.00 0.00 1.40
2430 2584 4.862574 TCTTACGTGACATCCTTTTCATCG 59.137 41.667 0.00 0.00 0.00 3.84
2439 2593 8.916654 CACATATTCTTATCTTACGTGACATCC 58.083 37.037 0.00 0.00 0.00 3.51
2440 2594 9.464714 ACACATATTCTTATCTTACGTGACATC 57.535 33.333 0.00 0.00 0.00 3.06
2441 2595 9.817809 AACACATATTCTTATCTTACGTGACAT 57.182 29.630 0.00 0.00 0.00 3.06
2471 2625 3.781280 GCTTGTTAAGCGCGCTAGTAAAG 60.781 47.826 36.73 31.19 45.74 1.85
2472 2626 2.093152 GCTTGTTAAGCGCGCTAGTAAA 59.907 45.455 36.73 23.85 45.74 2.01
2473 2627 1.657094 GCTTGTTAAGCGCGCTAGTAA 59.343 47.619 36.73 26.45 45.74 2.24
2474 2628 1.274596 GCTTGTTAAGCGCGCTAGTA 58.725 50.000 36.73 21.82 45.74 1.82
2475 2629 2.079049 GCTTGTTAAGCGCGCTAGT 58.921 52.632 36.73 23.06 45.74 2.57
2476 2630 4.955238 GCTTGTTAAGCGCGCTAG 57.045 55.556 36.73 27.62 45.74 3.42
2484 2638 5.008613 TGAGTTTGCCAAGTAGCTTGTTAAG 59.991 40.000 0.00 0.00 39.58 1.85
2485 2639 4.884744 TGAGTTTGCCAAGTAGCTTGTTAA 59.115 37.500 0.00 0.99 39.58 2.01
2486 2640 4.456535 TGAGTTTGCCAAGTAGCTTGTTA 58.543 39.130 0.00 0.00 39.58 2.41
2487 2641 3.287222 TGAGTTTGCCAAGTAGCTTGTT 58.713 40.909 0.00 0.00 39.58 2.83
2488 2642 2.930950 TGAGTTTGCCAAGTAGCTTGT 58.069 42.857 0.00 0.00 39.58 3.16
2489 2643 4.510038 AATGAGTTTGCCAAGTAGCTTG 57.490 40.909 0.00 2.16 40.75 4.01
2490 2644 6.183347 AGATAATGAGTTTGCCAAGTAGCTT 58.817 36.000 0.00 0.00 0.00 3.74
2491 2645 5.749462 AGATAATGAGTTTGCCAAGTAGCT 58.251 37.500 0.00 0.00 0.00 3.32
2492 2646 5.586243 TGAGATAATGAGTTTGCCAAGTAGC 59.414 40.000 0.00 0.00 0.00 3.58
2493 2647 7.798596 ATGAGATAATGAGTTTGCCAAGTAG 57.201 36.000 0.00 0.00 0.00 2.57
2494 2648 7.011389 CGAATGAGATAATGAGTTTGCCAAGTA 59.989 37.037 0.00 0.00 0.00 2.24
2495 2649 6.183360 CGAATGAGATAATGAGTTTGCCAAGT 60.183 38.462 0.00 0.00 0.00 3.16
2496 2650 6.183360 ACGAATGAGATAATGAGTTTGCCAAG 60.183 38.462 0.00 0.00 0.00 3.61
2497 2651 5.647658 ACGAATGAGATAATGAGTTTGCCAA 59.352 36.000 0.00 0.00 0.00 4.52
2498 2652 5.185454 ACGAATGAGATAATGAGTTTGCCA 58.815 37.500 0.00 0.00 0.00 4.92
2499 2653 5.741388 ACGAATGAGATAATGAGTTTGCC 57.259 39.130 0.00 0.00 0.00 4.52
2500 2654 7.374491 GCTTAACGAATGAGATAATGAGTTTGC 59.626 37.037 0.00 0.00 0.00 3.68
2501 2655 8.390354 TGCTTAACGAATGAGATAATGAGTTTG 58.610 33.333 0.00 0.00 0.00 2.93
2502 2656 8.391106 GTGCTTAACGAATGAGATAATGAGTTT 58.609 33.333 0.00 0.00 0.00 2.66
2503 2657 7.549134 TGTGCTTAACGAATGAGATAATGAGTT 59.451 33.333 0.00 0.00 0.00 3.01
2504 2658 7.041721 TGTGCTTAACGAATGAGATAATGAGT 58.958 34.615 0.00 0.00 0.00 3.41
2505 2659 7.468922 TGTGCTTAACGAATGAGATAATGAG 57.531 36.000 0.00 0.00 0.00 2.90
2506 2660 8.437360 AATGTGCTTAACGAATGAGATAATGA 57.563 30.769 0.00 0.00 0.00 2.57
2509 2663 9.378551 ACTTAATGTGCTTAACGAATGAGATAA 57.621 29.630 0.00 0.00 0.00 1.75
2510 2664 8.942338 ACTTAATGTGCTTAACGAATGAGATA 57.058 30.769 0.00 0.00 0.00 1.98
2511 2665 7.849804 ACTTAATGTGCTTAACGAATGAGAT 57.150 32.000 0.00 0.00 0.00 2.75
2512 2666 7.667043 AACTTAATGTGCTTAACGAATGAGA 57.333 32.000 0.00 0.00 0.00 3.27
2513 2667 9.820229 TTAAACTTAATGTGCTTAACGAATGAG 57.180 29.630 0.00 0.00 0.00 2.90
2514 2668 9.601971 GTTAAACTTAATGTGCTTAACGAATGA 57.398 29.630 0.00 0.00 28.48 2.57
2515 2669 9.388346 TGTTAAACTTAATGTGCTTAACGAATG 57.612 29.630 0.00 0.00 35.89 2.67
2516 2670 9.953697 TTGTTAAACTTAATGTGCTTAACGAAT 57.046 25.926 0.00 0.00 35.89 3.34
2517 2671 9.440784 CTTGTTAAACTTAATGTGCTTAACGAA 57.559 29.630 0.00 0.00 35.89 3.85
2518 2672 7.588488 GCTTGTTAAACTTAATGTGCTTAACGA 59.412 33.333 0.00 0.00 35.89 3.85
2519 2673 7.589954 AGCTTGTTAAACTTAATGTGCTTAACG 59.410 33.333 0.00 0.00 35.89 3.18
2520 2674 8.797266 AGCTTGTTAAACTTAATGTGCTTAAC 57.203 30.769 0.00 0.00 34.71 2.01
2522 2676 9.887406 GTTAGCTTGTTAAACTTAATGTGCTTA 57.113 29.630 0.00 0.00 31.68 3.09
2523 2677 8.410141 TGTTAGCTTGTTAAACTTAATGTGCTT 58.590 29.630 0.00 0.00 31.68 3.91
2524 2678 7.936584 TGTTAGCTTGTTAAACTTAATGTGCT 58.063 30.769 0.00 0.00 32.87 4.40
2525 2679 8.742554 ATGTTAGCTTGTTAAACTTAATGTGC 57.257 30.769 0.00 0.00 0.00 4.57
2532 2686 9.816354 AATCACAAATGTTAGCTTGTTAAACTT 57.184 25.926 0.00 0.00 33.51 2.66
2533 2687 9.248291 CAATCACAAATGTTAGCTTGTTAAACT 57.752 29.630 0.00 0.00 33.51 2.66
2534 2688 8.487176 CCAATCACAAATGTTAGCTTGTTAAAC 58.513 33.333 0.00 0.00 33.51 2.01
2535 2689 7.170658 GCCAATCACAAATGTTAGCTTGTTAAA 59.829 33.333 0.00 0.00 33.51 1.52
2536 2690 6.644592 GCCAATCACAAATGTTAGCTTGTTAA 59.355 34.615 0.00 0.00 33.51 2.01
2537 2691 6.015519 AGCCAATCACAAATGTTAGCTTGTTA 60.016 34.615 0.00 0.00 33.51 2.41
2538 2692 4.990426 GCCAATCACAAATGTTAGCTTGTT 59.010 37.500 0.00 0.00 33.51 2.83
2539 2693 4.281688 AGCCAATCACAAATGTTAGCTTGT 59.718 37.500 0.00 0.00 36.19 3.16
2540 2694 4.813027 AGCCAATCACAAATGTTAGCTTG 58.187 39.130 0.00 0.00 0.00 4.01
2541 2695 5.473066 AAGCCAATCACAAATGTTAGCTT 57.527 34.783 0.00 0.00 33.45 3.74
2542 2696 5.221501 ACAAAGCCAATCACAAATGTTAGCT 60.222 36.000 0.00 0.00 0.00 3.32
2543 2697 4.990426 ACAAAGCCAATCACAAATGTTAGC 59.010 37.500 0.00 0.00 0.00 3.09
2544 2698 7.481275 AAACAAAGCCAATCACAAATGTTAG 57.519 32.000 0.00 0.00 0.00 2.34
2545 2699 9.553064 AATAAACAAAGCCAATCACAAATGTTA 57.447 25.926 0.00 0.00 0.00 2.41
2546 2700 8.449251 AATAAACAAAGCCAATCACAAATGTT 57.551 26.923 0.00 0.00 0.00 2.71
2547 2701 9.553064 TTAATAAACAAAGCCAATCACAAATGT 57.447 25.926 0.00 0.00 0.00 2.71
2549 2703 9.995003 TCTTAATAAACAAAGCCAATCACAAAT 57.005 25.926 0.00 0.00 0.00 2.32
2550 2704 9.474920 CTCTTAATAAACAAAGCCAATCACAAA 57.525 29.630 0.00 0.00 0.00 2.83
2551 2705 8.855110 TCTCTTAATAAACAAAGCCAATCACAA 58.145 29.630 0.00 0.00 0.00 3.33
2552 2706 8.296713 GTCTCTTAATAAACAAAGCCAATCACA 58.703 33.333 0.00 0.00 0.00 3.58
2553 2707 7.481798 CGTCTCTTAATAAACAAAGCCAATCAC 59.518 37.037 0.00 0.00 0.00 3.06
2554 2708 7.389330 TCGTCTCTTAATAAACAAAGCCAATCA 59.611 33.333 0.00 0.00 0.00 2.57
2555 2709 7.748847 TCGTCTCTTAATAAACAAAGCCAATC 58.251 34.615 0.00 0.00 0.00 2.67
2556 2710 7.626452 GCTCGTCTCTTAATAAACAAAGCCAAT 60.626 37.037 0.00 0.00 0.00 3.16
2557 2711 6.348213 GCTCGTCTCTTAATAAACAAAGCCAA 60.348 38.462 0.00 0.00 0.00 4.52
2558 2712 5.121768 GCTCGTCTCTTAATAAACAAAGCCA 59.878 40.000 0.00 0.00 0.00 4.75
2559 2713 5.561070 GCTCGTCTCTTAATAAACAAAGCC 58.439 41.667 0.00 0.00 0.00 4.35
2560 2714 5.061808 TCGCTCGTCTCTTAATAAACAAAGC 59.938 40.000 0.00 0.00 0.00 3.51
2561 2715 6.459330 GTCGCTCGTCTCTTAATAAACAAAG 58.541 40.000 0.00 0.00 0.00 2.77
2562 2716 5.060077 CGTCGCTCGTCTCTTAATAAACAAA 59.940 40.000 0.00 0.00 34.52 2.83
2563 2717 4.556135 CGTCGCTCGTCTCTTAATAAACAA 59.444 41.667 0.00 0.00 34.52 2.83
2564 2718 4.093514 CGTCGCTCGTCTCTTAATAAACA 58.906 43.478 0.00 0.00 34.52 2.83
2565 2719 4.337763 TCGTCGCTCGTCTCTTAATAAAC 58.662 43.478 0.00 0.00 40.80 2.01
2566 2720 4.585364 CTCGTCGCTCGTCTCTTAATAAA 58.415 43.478 0.00 0.00 40.80 1.40
2567 2721 3.545624 GCTCGTCGCTCGTCTCTTAATAA 60.546 47.826 0.00 0.00 40.80 1.40
2568 2722 2.033065 GCTCGTCGCTCGTCTCTTAATA 60.033 50.000 0.00 0.00 40.80 0.98
2569 2723 1.268133 GCTCGTCGCTCGTCTCTTAAT 60.268 52.381 0.00 0.00 40.80 1.40
2570 2724 0.096628 GCTCGTCGCTCGTCTCTTAA 59.903 55.000 0.00 0.00 40.80 1.85
2571 2725 1.714414 GCTCGTCGCTCGTCTCTTA 59.286 57.895 0.00 0.00 40.80 2.10
2572 2726 2.481464 GCTCGTCGCTCGTCTCTT 59.519 61.111 0.00 0.00 40.80 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.