>input_sequence_74830
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-----------ATGGCCGTGGCCTCCATGCTTCATGCGCCGTCTCTCCTGGCAGTCCAACCCTTCGGCGGACAGAGGAAT
GCTGCCAGCGCTAACCGCTCACCGAGAGCGGCGGCTTTCAGGGTTCAGGCAGCCAAGCTTCCTGCCGGAGTAAGTTCCTG
CATG--------------------GCTTCCTTCGTTTCATTAGATTATTATAAGAGACGGTTCTCCGAGATCTTAACATC
TTTTG----TGCTTGATTGGTGTGTAGAGTTCAGACACAAGTTAGT-----------------TTACTGAAACTTTAGTG
TTCATGAC----AGGTCCAGGTGCCAAAGGCGCAACCCAAGCTGAGTGAGCCGTTCCTGGGGTTCACCAAGACCGCGGAG
GTGTGGAACTCCAGGGCCTGCATGATGGGCCTCATCGGGACCTTCATCGTGGAGCTGGTAAGAAAATCTAC--CAATCGT
TCAATCGCGAAAGCACTGTCATAATTCG-ATTTGCTTCATTGTATATATGCATTTGTGATTATTGATGCGTTTTGGGGCT
CTGCTTTTTTTTTCTTCCTTCCAGATATTGAACAAAGGTGTTCTTGAGATAATCGGTTTCGAAGTGGGGAAAGGCCTCGA
TATTCCTTTGTAG-------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G454500
AATTATCAAGCACGCTTGCTACACTGGCATGAACATCTAAAAAAAACTCAGGATTTTTGAAATTTAGTTACTATTTTTAA
AAAAATTTATTGTTTATTAGGGAGCATATGCTCCCAAGAGCCCAAACGGCCATCCAAAGTCCATAACAGAAAAGAGGTCT
AGAGGAGTACTTTTTATATGGGAGGCAGAGTGCTTATGACGTGTGCAATGATGCTACTGTAGAATGACT----ATGTAGA
ATAAATGCTAAGGTGAGAAGAGAGAAACTAAAGAAAAAACATTGTTGTCCTTCCGTTAAGTAAAATATGATCCCTTGGCA
ACAATATCTCTCACCATGTATTAAGTAAAGTTGAGTTACTAAAGGTATAACTAACACATAACCATCACACTTTTATTATC
ATCTCTAAATTATGTTTTAGGCTTATAAAATAAAATATACGCAAACCAGCTCTATTAGACCCTGTTTTGGTTGTTCAAAT
TTAAAATTTTAAAATTTCAGACGGTGTCAAATTTTCTCGGGTATCACTGAAGTTTTCGGTATGCTGTCGGTTATCGAAAA
TTCCGACCCCAAAAAAACCCTACTTGAAACGGCACCGTCCGGTGGCTAGAAAGGATT-----------------------
--------AGATCACCTGCAGCGTCATGGGAGGGTCGTCTGATCCAAAAGTTCGACGCCTGCCCGCCGGAGCGCGTTGAT
GCTTTTCGTCTCTTGAGATGCTGAGA------------CCTCACGCGTAACATTTGAGCCACGCAGCTGCCCAGTGGCAG
TGCACACATGCTCCCGGCCCACCACCGTACGTGTACGTGAGCACGTCCACTTATTGCCGGACACCGCGCCGGATAAGGTT
GTGCTCCGCAACCAAGCCAGCCAGCCAGCCAGCCTCTCGACCGCTCGTTCGCCAGTCCACTCTCGTGTCCTTTCTCTACC
TC--AGCCGTTGCATCGCAGCCCCAGCCTGCTCTTCTTC--CTCCCCCTTACCAAACTCTCCGTAGTGCCGTGGTTAATC
AGTGTGCAGCAATGGCCGTGGCCTCCATGCTTCATGCGCCGTCTCTCCTGGCAGTCCAACCCTTCGGCGGACAGAGGAAT
GCTGCCAGCGCTAACCGCTCACCGAGAGCGGCGGCTTTCAGGGTTCAGGCAGCCAAGCTTCCTGCCGGAGTAAGTTCCTG
CATG--------------------GCTTCCTTCGTTTCATTAGATTATTATAAGAGACGGTTCTCCGAGATCTTAACATC
TTTTG----TGCTTGATTGGTGTGTAGAGTTCAGACACAAGTTAGT-----------------TTACTGAAACTTTAGTG
TTCATGAC----AGGTCCAGGTGCCAAAGGCGCAACCCAAGCTGAGTGAGCCGTTCCTGGGGTTCACCAAGACCGCGGAG
GTGTGGAACTCCAGGGCCTGCATGATGGGCCTCATCGGGACCTTCATCGTGGAGCTGGTAAGAAAATCTAC--CAATCGT
TCAATCGCGAAAGCACTGTCATAATTCG-ATTTGCTTCATTGTATATATGCATTTGTGATTATTGATGCGTTTTGGGGCT
CTGCTTTTTTTTTCTTCCTTCCAGATATTGAACAAAGGTGTTCTTGAGATAATCGGTTTCGAAGTGGGGAAAGGCCTCGA
TATTCCTTTGTAGTCTGCTCT--CCCTCCTTGCCTATGGGATATTGATAC--------TAAGAGCCACATGAAAAGGT--
-TTGTAGCC---------------------ACCAATGGCAATGCTATGCATCATAGTAAATATATAAACGAGCTCTAAGC
ATTTCATTATACTTGCTATTTTTCATTTT-ACACTCGTGTCACCGCTATGATAGGGAGAGTGATGTTCAACCCTCGACAA
TATTCTGCTGAGACGGGTGATACTCCCTCCGTTCCAAAATAGATGACCCAACTTTATACTAACCTTAGTACAAAGTTGGG
TCATCTATTTTGAAACGGAGGGAGTAGTTCATATGGTTAATATGGAAGGTTGTTCATTGTTTTGAAAAGAAAAACGGAAG
TTGTCCATGTTTTGAAAAGTATGTGTGACTTATAAATCGTAATGATGTGGTTCTGGTGCCATGATATTCTGAACTAGTAT
TTCTTCATATGAGTATAATGTTTGCCCCTCTC-TTTTCGGCTCGGGC--TTTTGGTTGAACTAGTTTTCTTTAATTTGGA
TGGCTAAGTCAGCTGCTAAGGGTAGGCGTGGATTGACGAGCTACTCAGCTCATTAAGGCTTGGCCCGTTAAGTTTGTACT
C---ATTAAGGCTCGGTCCATTAAGCTCTTTAAGCTTAACTAGCAAAAAACTATGTTCGGTTTTGTTTAAGCCCAAGCTC
ATTAAACTCA--------TGAGTGCTCGTTAACAGACTACAATGATTTACGGCCTACCAGATAAGAGTGCGGGTGTGATT
TTTGTGAACG----AAGATGGTGACTACAGGAG-AGATGTGCTACATTGTTCCCTTCTACGAGCTAGGTTGGATCCATAA
GATTAAATAGATGAGTTGAGGTGCGATGAAAAGGATGTCACGTAAGATAAGAATATGTGTTATGCTTTACTAGCGCGCTT
AACAAGCTACTTGGCAAACTCATTATCTCATTCGTTAAGCACATTAAGTTTAACAAGCTAACATTTGTGATTGGCTTTGT
TTATTAAGAGACGAGCGACGAGCTTAA
>chr6D_68
-------------------------------------------------------------------TTACTATTTTTTT
--AAATTTACTGTTCATTAGGGAGCATATGCTCCCAAGAGCCCAAACGGCCATCCAAAGTCCATAACAGAAAAGAGGTCC
AGAGGAGTACTTTTTATATGGGAGGCAGAGTGCTTGTGGCGTGTACAATGATGCTACTGTAGAATGACCATGCATGTAGA
ATAAATGCTAAGGTGAGAAGAGAGAAAC-AAAAAAAAAACATTGTTTGCCTTCCGTTAAGTAAAATATGATCCCTTGGCA
ACAATATTTCTCACCATATATTAAGTAAAGTTGAGTTACTAAAGATAAAACTAACACATAACCATCACATTTTTATTATC
ATCTCTAAATTATGCTTTAGGCTTATAAGATAAAATATATGCAAACCAGCTCGATTAGACCCTGT-TTGGTTGTTCAAAT
TTAAAATTTTAAAATTTCAGACGGTGCCAAATTTTCTCGGATATCACTGAAGTTTTCGGTATGCTGTCGGTTACCGAAAA
TTCCGACCCCAAAAAA-CCCTACTTGGAACGGCACCGTTAGGTGGCTAGAAAGGATTTTGGAGGGCACAATCACAATTCA
TGGGGTCCAGATCACCTGCAGCGTCATGGGAGAGTCGTCTGATCCAAAAGTTCGACGCCTGCCCGCCGGAGCGCGTTGAT
GCTTTTCGTCTCTTGAGATGCAGCTGCCCGTTAGGTGGCCTCACGCATAACATTTGAGCCACGCAGCTGCCCAGTGCACA
CAC------GCTCCCGGCCCACCAGCGTACGTGTACGTGAGCACGTCCAC-------------CCGCGCCGGATAAGGTT
GTGGTCCGCAACAAA----CCCAGGCAGCCAGCTTCTCGATCGCTCGTTCGCTAGCCCCATCTCGTGTCCTTTCTCTACC
TCTGAGCCATCGCATTGCAGCCCCGGCCTGCTCATCTTC--CTCCCC--TACCAAACTCTCTGTGGTGCCGAGGTTAATC
AGTGTACAGCAATGGCTGTGGCCTCCATGGTTCATGCACCGTCTCTCCTGGCAGTGCAGACCTTCCGCGGACAGAAGAAT
GCTGC---CGCTAACCGCTCACCGAGAGCGGCGGCTTTCAGAGTCCGGGCGGCGAAGCTTCCTGCCGGAGTAAGTTCCTG
CATGCATCCAAGGCTACCTCCCTCGCTTCCTTCGTTCCCCGTGCCTCTGCG--TCA-------------ATCTTAAAATC
TTCTCTACTTGATTGATTCGTGTGTAGAGTTCAGAAAGAAGCAAGTGATTTATTTAACTTTAGTTGCTGAAACTTTGGTG
TTTCTTTCTGCTAGGTCCGGGTGCCAAGGGCGCAGCCCAAGCTGAGTGAGCCGTTCCTGGGGTTCACCAAGACCGCGGAG
GTCTGGAACTCCAGGGCCTGCATGATGGGCCTCATTGGGACCTTCATCGTGGAGCTGGTAAGAACATCTGTGTCATCCGT
TCAATCGCGAAAGCACTGTCATAATTAGAATTTCCTCCATTGTATACATGCATTTGTGATTATTGATGCGTTTTGGGGCT
CTGCTTTTT-----TTCCTTCCAGATATTGCACAAAGGTGTTCTTGAGATAATCGGTTTCGAAGTGGGGAAAGGCCTCGA
TATTCCACTGTAGTCTGCTCT--CCCTCCTTGCCTATAAGATGTTGATGCTCGGGAGATAAGAGCCACAAGAAAGCGT--
-TACCAATTATGCGCAAAAAAAAAACCGTTACCAATGGCTATGCTATGCATCATAGCAAATATATAATGGAGCTCTGAGC
ATTTCATTGTGCTTGCTATTTTTCATTTTTACACTCGTCTTACCAAAGTGATCGACAGAGTGATCTTCAACACTTGACAA
TATTCTGCTGAGATGGGTGATAGTTTGTACC-------------------------------------------------
-----------------------------------GTTAATATGAAAACTTGTTCGTTGTTTTGAAAAGAAAAACTGAAG
TTGTCCATGTTTTGAAAAGTATGC-TGACTTGTAAATCACAATGATGTGGTTCCGATGCCATGATATTCTGAACTAGTGT
TTCTACATATGAGTACAATGTTTCACTCTCTTTTTTTCGGCTCGAGCTTTTTTGGTTGAACTGGTGCTCTTAAGTTTGGA
TGGCTAAGTCAGCTGCTAAGGGTAGGGGTGGATTGACGAGCTGCTCGGCTCATTAAGACTTGGCTCGTTAAGTTCATACT
CCTCATTAAGGCTTGGCTTA---------TTAAGCTTAACTAGCACAAAACTATGTTTGCCTCTATTCGTCTA-AAGCTC
GTTAAGCTCGTGACTTTGTGAGCGCTCGTTAATAGACTACGATGATTTACTACCTATGGGTTGAGAGTGTGGGTGTGATT
TTTGCGAACAAATTAAGATGGTGACTACAGGAGGAGATGCGCTAGATTATTGCCTCTTATGAGCTAGGTTGGGTCGATTA
TATTGAATAGATGAGTTGAGGTGTGATGAAAACATTTTCACGTAAGATAAGAATATGTGTT-------------------
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>chr6A_798
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--------------------------------------------GTCCACTTGTTGCATGACACCACGACGGATAAGGTT
GTGGTACGCAACCAA----GCCAGGCAGCCAGCCTCTCGGCCGCTCGTTCGCTAGCCCCATCTCGTGTCCTCTCTCTACC
TCTGAGCCGTTGCGTCGCAGCCCCAGCCTGCTCCTCTTCCTCTCCCC--TGCCAAACTCCCCGTGGTGCCGTGGTTAATT
CGAGTATAGCAATGGCTGTGGCCTCCATGCTTCATGCACCGTCTCTCCTAGCAGTCCAGACCTTCCGCGGACAGAGGAAT
GCTGC---CGCTAACCGCTCACCGAGAGCGGCGGCTTTCAGAGTCCGGGCAGCGAAGCTTCCGGCCGGAGTAAGTTCCTG
CGTCCAC----GGCTGCCTCCCTCGCTTCCTTCATTCCCCGTGCCTCTGCGTCTCA-------------AGCTTAAAATC
TTCTCTACTTGATTGATCCGTGTGTAGAGTTCAGAAAGAAGCAAGTGATTTATTTAACTTTAGTTGCTGAAACTTTGGCG
CTTCTTTCTGCTAGGTCCAGGTGCCAAGGGCGCAGCCCAAGCTGAGTGAGCCGTTCCTGGGGTTCACCAAGACCGCGGAG
GTGTGGAACTCCAGGGCCTGCATGATGGGCCTCATCGGGACCTTCATCGTGGAGCTGGTAAGAACATCTATGTCAACCGT
TCAATCGTGAAAGCACTGTCATAATTGAAATTTGCTTCTTTGTATATATGCATGCGTGATGACAGATGTGTTTTGGGGCT
CTGTTTTTTATTT--------CAGATATTGAACAAAGGCGTTCTTGAGATAATCGGTTTTGAAGTGGGAAAAGGCCTCGA
TATTCCATTGTAGTCTGATCTCCCCTCCCTGCCCTATGAGATGCTGATGCTCGGGACATAAGAGCCACATGAAAATTAAG
GTTGTAGCC---------------------ACCAATAGCTATGCTCTGCATCATAGTAAATATATAAACAAGCTCTAAGC
ATTCCGTTGCACTTGCTATTTTTCA-TTTTACACTCGTCTTACCAAAGTCATCGACAGAGTGATCTTCAACACTCGACAA
TATTCTGCTGAGCTGGGTGATA----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SS
SS-------S----S----------------------------------------------------------------S
-----------------------------------S--S-----S-----------------------S-----------
----------------------------S---S-------------SS--------------------------------
-------S---------S--------------------------S--S---------------------S----------
--------------S-------------S----------S------------S------------S--------------
--------------------------S-------------S--------------------------------S------
----------------S---------S-----------SS----------------------------------------
--------------------------------S-----------------------------------------------
---------------------S-SSS--------------------S-----------------------------SSSS
SS-SSSSSS---------------S---------------------------S----SS---------------------
---S-----------SSSS-----S---------------------------S--S--SS--------------------
---------------------------------S-------------SS---------------S---------------
-----S----------S--------------------S--------------------SS-----S--------------
-----SSS---------------------------------S--S-S------S--------------------------
------------------------------------S-SSSS-SS-S-SSSSSSSSSSSSSSSSSSSSS-------S---
--S-S------S------S----------------S-S---SS----------------------S----------S---
--SS-SS--------------------S------S---------------------------------------------
----------------------------------------------------------------S-----S-----S---
--------------------------S-----------------------------------------------------
---------S---S------------------------------------------------------------------
------S-------------------------------S---S-----S--------------------------S----
---------------------------------------S----------------------------------------
--------S-----------------------------S-S---SSSS----S-SS--------S------S--------
-------------S--------S-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--SS------S-------------------S----
-----------------------SS------S------SS-------------S-S----------------------S-
----S----------S-------SS-S----S------------S-----------------S--SS----S-S------
--------------------------S---------------S---S----------S------S---------SS----
-------------S--SSS-SSSSSSSSS----------------S-----------S-SS-S-S--SSSSSSS------
S----S---S------------S---------S-------S---------SS----SSS-S-S------S----------
----S----S-----------------------------S----S---S--S---SS--S------------S--S--S-
S---S------------------S--------SSS-S------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1009
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-----------------------------CTGCTCTTCTTCCTCCCCCT-------------------------------
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>reverse_2724
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---TTAAGAGACGAGCGACGAGC----
